BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031200
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W115|PR1A3_ARATH PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1
Length = 209
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/156 (69%), Positives = 127/156 (81%)
Query: 9 YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
YRTNYFI+ +LGL + RP+AI+ A LTALS+AFLNDSFA TFNEK+ RT+R FSPHL
Sbjct: 54 YRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHL 113
Query: 69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
AAKMRPP PVIRGR + ++ +YICG+PR VFVL+ SF+LW+ SCGLL VL+AL
Sbjct: 114 AAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTA 173
Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
LL +LHAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LLMILLHASLRTPNLKARLNTFREEFRAVWRNYSEL 209
>sp|Q8GWC3|PR1A2_ARATH PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1
Length = 209
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 127/156 (81%)
Query: 9 YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
YRTNYFI++ +LGL + RP+A++ A LTALSIAFLNDSFA +FNEK RT+R FSPH+
Sbjct: 54 YRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHM 113
Query: 69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
AAKMRPP PVIRGR +A++ +Y+CG+PRWVFV+ F S ++W+ SCGLL VL+AL
Sbjct: 114 AAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTS 173
Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
L I+HAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 174 LAVIIVHASIRTPNLKARLNTFREEFRAVWRNYSEL 209
>sp|Q9LZM7|PR1A1_ARATH PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1
Length = 209
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/156 (79%), Positives = 136/156 (87%)
Query: 9 YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHL 68
YRTNYFIMI VILGLG L RP+AI AALLTALS+AFLNDSFAG+F+EK TRTVR+FSP L
Sbjct: 54 YRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQL 113
Query: 69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
AAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL S VSF LWY+S GLL V AL +
Sbjct: 114 AAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIA 173
Query: 129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
LATILHAS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNYSEI 209
>sp|Q5E9M1|PRAF3_BOVIN PRA1 family protein 3 OS=Bos taurus GN=ARL6IP5 PE=2 SV=1
Length = 188
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 100 FVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREE 153
FV++ S+ L + G++ ++ + LL +HAS R NLK +L EE
Sbjct: 101 FVMVVMLASYFLISLFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKMEE 154
>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1
Length = 182
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 9 YRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFL 45
+R NY I+++++LGL + RP+AI+A + L+ FL
Sbjct: 52 FRINYSIILSILLGLTLITRPIAILAFIAVGLAWFFL 88
>sp|A2EI35|SEY11_TRIVA Protein SEY1 homolog 1 OS=Trichomonas vaginalis GN=TVAG_273580 PE=3
SV=1
Length = 804
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 96 PRWV-FVLIFSCVSFILWYVSCGLLTVLWALAVG 128
P W F+ +FSC +ILW++S LL L L G
Sbjct: 640 PPWAWFLFLFSCSDYILWWLSNPLLFSLTVLFGG 673
>sp|Q8R5J9|PRAF3_MOUSE PRA1 family protein 3 OS=Mus musculus GN=Arl6ip5 PE=1 SV=2
Length = 188
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 100 FVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFRE 152
FV++ S+ L + G++ ++ + + LL +HAS R NLK +L E
Sbjct: 101 FVMVVMLASYFLISMFGGVMVFVFGITLPLLLMFIHASLRLRNLKNKLENKME 153
>sp|Q56P28|PRAF3_PIG PRA1 family protein 3 OS=Sus scrofa GN=ARL6IP5 PE=2 SV=1
Length = 188
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 99 VFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNT 149
VFV++ S+ L + G++ ++ + LL +HAS R NLK +L
Sbjct: 100 VFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLEN 150
>sp|Q6PRD1|GP179_HUMAN Probable G-protein coupled receptor 179 OS=Homo sapiens GN=GPR179
PE=1 SV=2
Length = 2367
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 79 VIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILW 112
VIRG + R Y+C RW ++++ + + + W
Sbjct: 523 VIRGHTPSGRHFYLCHHDRWDYIMVVAELLLLCW 556
>sp|Q5F433|PRAF3_CHICK PRA1 family protein 3 OS=Gallus gallus GN=ARL6IP5 PE=2 SV=1
Length = 188
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 100 FVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREE 153
FV++ S+ L ++ ++ + + LL +HAS R N+K +L +EE
Sbjct: 101 FVIVIMLSSYFLISYLGDVMVFMFGITLPLLLMFIHASLRLRNIKNKLENKKEE 154
>sp|Q9HBU9|POPD2_HUMAN Popeye domain-containing protein 2 OS=Homo sapiens GN=POPDC2 PE=2
SV=2
Length = 364
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 112 WYVSCGLLTVLWA--LAVGLLATILHASFRTPNLKARLNTFREEFRAVWRN 160
W+ +CGL VLW+ LAV L + H +R R +T EEF +++
Sbjct: 69 WFSACGLDIVLWSFLLAVVCLLQLAHLVYRL-----REDTLPEEFDLLYKT 114
>sp|Q9ES82|POPD2_MOUSE Popeye domain-containing protein 2 OS=Mus musculus GN=Popdc2 PE=2
SV=1
Length = 367
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 112 WYVSCGLLTVLWA--LAVGLLATILHASFRTPNLKARLNTFREEFRAVWR 159
W+ +CGL VLW L V L + +R R+NT EEF ++R
Sbjct: 69 WFDACGLDIVLWNVLLTVACLLQLAQLVYRV-----RVNTLPEEFNLLYR 113
>sp|Q5R4X8|PRAF3_PONAB PRA1 family protein 3 OS=Pongo abelii GN=ARL6IP5 PE=2 SV=1
Length = 188
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 100 FVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFRE 152
FV++ S+ L + G++ ++ + LL +HAS R NLK +L E
Sbjct: 101 FVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME 153
>sp|O75915|PRAF3_HUMAN PRA1 family protein 3 OS=Homo sapiens GN=ARL6IP5 PE=1 SV=1
Length = 188
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 100 FVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFRE 152
FV++ S+ L + G++ ++ + LL +HAS R NLK +L E
Sbjct: 101 FVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME 153
>sp|Q9ES40|PRAF3_RAT PRA1 family protein 3 OS=Rattus norvegicus GN=Arl6ip5 PE=1 SV=1
Length = 188
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 100 FVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFRE 152
FV++ S+ L + G++ ++ + LL +HAS R NLK +L E
Sbjct: 101 FVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME 153
>sp|Q4R4R4|PRAF3_MACFA PRA1 family protein 3 OS=Macaca fascicularis GN=ARL6IP5 PE=2 SV=1
Length = 188
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 100 FVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFRE 152
FV++ S+ L + G++ ++ + LL +HAS R NLK +L E
Sbjct: 101 FVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.142 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,725,883
Number of Sequences: 539616
Number of extensions: 1996130
Number of successful extensions: 8157
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8135
Number of HSP's gapped (non-prelim): 29
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (26.2 bits)