Query 031200
Match_columns 164
No_of_seqs 105 out of 171
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4050 Glutamate transporter 100.0 1.9E-30 4.2E-35 208.7 10.1 119 4-155 49-167 (188)
2 PF03208 PRA1: PRA1 family pro 99.9 3.1E-21 6.7E-26 149.7 11.6 118 4-154 35-152 (153)
3 KOG3142 Prenylated rab accepto 99.8 2.4E-20 5.2E-25 152.8 11.1 101 4-141 64-166 (187)
4 COG5130 YIP3 Prenylated rab ac 98.3 8E-07 1.7E-11 71.2 5.4 103 3-143 55-160 (169)
5 PF11239 DUF3040: Protein of u 63.7 28 0.0006 24.6 5.6 16 59-74 16-31 (82)
6 TIGR00261 traB pheromone shutd 61.3 56 0.0012 29.8 8.4 35 125-160 312-348 (380)
7 PF11368 DUF3169: Protein of u 53.2 22 0.00047 29.8 4.1 44 7-50 195-241 (248)
8 PRK13823 conjugal transfer pro 48.8 50 0.0011 24.5 5.0 61 90-161 16-77 (94)
9 PF01484 Col_cuticle_N: Nemato 43.9 49 0.0011 20.8 3.8 22 135-156 23-44 (53)
10 TIGR03750 conj_TIGR03750 conju 43.6 48 0.001 25.4 4.3 78 76-158 11-93 (111)
11 PRK12324 phosphoribose diphosp 41.0 2.5E+02 0.0053 24.6 9.0 15 149-163 194-208 (295)
12 PF11674 DUF3270: Protein of u 40.5 68 0.0015 23.8 4.6 35 100-134 48-83 (90)
13 COG4389 Site-specific recombin 36.5 83 0.0018 30.4 5.5 38 117-161 617-654 (677)
14 KOG3067 Translin family protei 36.0 9.6 0.00021 32.4 -0.6 27 130-158 172-198 (226)
15 PF07444 Ycf66_N: Ycf66 protei 35.0 1.8E+02 0.0039 21.2 6.5 44 98-141 38-84 (84)
16 PF01618 MotA_ExbB: MotA/TolQ/ 34.6 84 0.0018 23.8 4.5 38 115-154 100-137 (139)
17 TIGR01239 galT_2 galactose-1-p 33.5 25 0.00054 33.3 1.6 27 137-163 306-333 (489)
18 PRK10655 potE putrescine trans 33.1 45 0.00097 29.4 3.1 26 121-146 410-436 (438)
19 PF13748 ABC_membrane_3: ABC t 30.6 1.4E+02 0.0031 25.7 5.7 30 124-153 146-175 (237)
20 PF10112 Halogen_Hydrol: 5-bro 29.0 1.2E+02 0.0027 24.3 4.8 38 109-146 21-58 (199)
21 PF00979 Reovirus_cap: Reoviru 28.4 40 0.00086 30.9 2.0 21 142-162 285-305 (367)
22 TIGR02797 exbB tonB-system ene 28.3 88 0.0019 25.8 3.9 40 117-156 166-207 (211)
23 smart00015 IQ Short calmodulin 28.2 36 0.00078 18.8 1.1 15 147-161 2-16 (26)
24 PF14012 DUF4229: Protein of u 27.6 2.1E+02 0.0046 19.8 5.6 33 123-155 34-66 (69)
25 PF06305 DUF1049: Protein of u 27.0 1.2E+02 0.0025 19.9 3.7 11 142-152 52-62 (68)
26 PRK10113 cell division modulat 26.9 23 0.00051 25.4 0.2 10 150-159 29-38 (80)
27 PRK05270 galactose-1-phosphate 26.3 38 0.00083 32.1 1.6 27 137-163 309-336 (493)
28 KOG3088 Secretory carrier memb 25.5 2.1E+02 0.0046 25.8 5.9 47 111-159 243-290 (313)
29 COG3105 Uncharacterized protei 24.9 2.1E+02 0.0046 22.8 5.3 41 121-161 11-53 (138)
30 PF09964 DUF2198: Uncharacteri 24.8 1.4E+02 0.0031 21.5 3.9 8 155-162 37-44 (74)
31 PRK10381 LPS O-antigen length 24.3 1.2E+02 0.0025 27.4 4.2 22 121-142 346-367 (377)
32 PF10066 DUF2304: Uncharacteri 23.8 1.2E+02 0.0025 22.6 3.5 32 124-155 72-103 (115)
33 PF12732 YtxH: YtxH-like prote 23.4 1.5E+02 0.0033 20.1 3.8 40 121-160 5-44 (74)
34 PF04854 DUF624: Protein of un 23.3 2E+02 0.0044 19.3 4.4 35 125-162 19-53 (77)
35 COG3452 Predicted periplasmic 23.1 1E+02 0.0022 27.5 3.5 26 131-156 30-64 (297)
36 PF07557 Shugoshin_C: Shugoshi 22.3 39 0.00084 19.7 0.5 11 65-75 16-26 (26)
37 PRK09885 putative toxin YafO; 21.7 59 0.0013 25.8 1.6 24 133-156 107-130 (132)
38 TIGR02796 tolQ TolQ protein. T 21.0 1.5E+02 0.0032 24.6 3.9 38 117-154 170-209 (215)
39 PF04156 IncA: IncA protein; 20.1 4.2E+02 0.0092 20.7 6.3 14 144-157 87-100 (191)
No 1
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-30 Score=208.67 Aligned_cols=119 Identities=25% Similarity=0.376 Sum_probs=100.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccCC
Q 031200 4 ACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGR 83 (164)
Q Consensus 4 ~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~~ 83 (164)
-||+||||||++.++..+.+.++.+|..+++++++.+.. +...+|+. .+++ .+| |||+ ++
T Consensus 49 sNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlv-i~~liwa~-~~~a---~~k--------rmr~-------~h 108 (188)
T KOG4050|consen 49 SNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLV-IGTLIWAA-SADA---NIK--------RMRT-------DH 108 (188)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHHHHHH-hccH---HHH--------HHhh-------cC
Confidence 489999999999999999999999999998887654322 11224885 3443 455 4564 44
Q ss_pred CCcchhheecCCCceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhHH
Q 031200 84 PSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFR 155 (164)
Q Consensus 84 p~~~~~v~i~~~~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~fr 155 (164)
| ++++.++++++|++++..|+++++.|++++|++++++|||+|+||+|||+||++|++-
T Consensus 109 p-------------~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRnikNkleN~iEsig 167 (188)
T KOG4050|consen 109 P-------------LVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRNIKNKLENKIESIG 167 (188)
T ss_pred c-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Confidence 8 7789999999999999999999999999999999999999999999999999999973
No 2
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=99.86 E-value=3.1e-21 Score=149.68 Aligned_cols=118 Identities=29% Similarity=0.488 Sum_probs=94.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccCC
Q 031200 4 ACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGR 83 (164)
Q Consensus 4 ~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~~ 83 (164)
-|+.|||+||++++.+++++++++||..++++++++.+|.+.++... .++ ++. ..|.
T Consensus 35 ~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~--~~~----~~~-----------------~~~~ 91 (153)
T PF03208_consen 35 RNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK--END----PIV-----------------IGGR 91 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCc----chh-----------------ccCc
Confidence 38999999999999999999999999999999888888877731111 011 121 1222
Q ss_pred CCcchhheecCCCceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhH
Q 031200 84 PSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEF 154 (164)
Q Consensus 84 p~~~~~v~i~~~~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~f 154 (164)
.. ++.....++.++++++++.++++.+++++++++++++++||+||.||+|+|.||+.|+|
T Consensus 92 ~~----------~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~~~ 152 (153)
T PF03208_consen 92 KI----------SPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIESF 152 (153)
T ss_pred cc----------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHhcc
Confidence 22 22335678888888999999999999999999999999999999999999999999987
No 3
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-20 Score=152.76 Aligned_cols=101 Identities=25% Similarity=0.569 Sum_probs=90.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccCC
Q 031200 4 ACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGR 83 (164)
Q Consensus 4 ~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~~ 83 (164)
.|+-|||+||.++++.+.++++++||++|++++..+++|.++ |+ + ||+
T Consensus 64 ~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~L---Y~-------------~----------------rd~ 111 (187)
T KOG3142|consen 64 RNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFL---YF-------------L----------------RDE 111 (187)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhe---ee-------------e----------------cCC
Confidence 589999999999999999999999999999999999999998 55 1 333
Q ss_pred CCcchhheecCC--CceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCc
Q 031200 84 PSAKRAIYICGR--PRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTP 141 (164)
Q Consensus 84 p~~~~~v~i~~~--~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~r 141 (164)
| ++++|+ |++.++++++++++.+++++++..+++|++..+++++++||+||.+
T Consensus 112 p-----Lvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~ 166 (187)
T KOG3142|consen 112 P-----LVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNT 166 (187)
T ss_pred C-----eEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhCh
Confidence 4 555555 5666899999999999999999999999999999999999999964
No 4
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=98.34 E-value=8e-07 Score=71.22 Aligned_cols=103 Identities=23% Similarity=0.462 Sum_probs=80.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhcCCCCCCcccC
Q 031200 3 FACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRG 82 (164)
Q Consensus 3 ~~~LlYYqtNY~li~l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa~~~~~~~~~~lr~f~p~~~~k~r~~~~~~~r~ 82 (164)
++|+=||..||.+++...-++.+++||.-+++..+++.+. |- +|+. ||
T Consensus 55 ~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGv------yg----------i~kl----------------~g 102 (169)
T COG5130 55 FANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGV------YG----------IRKL----------------RG 102 (169)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhhee------ee----------hhhc----------------cc
Confidence 6899999999999999999999999998777766555443 22 4444 33
Q ss_pred CCCcchhheecCC---CceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcch
Q 031200 83 RPSAKRAIYICGR---PRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNL 143 (164)
Q Consensus 83 ~p~~~~~v~i~~~---~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNl 143 (164)
+|. +|.. +|..+.++++.+..++-++.+.+.+++|-++.+...++-||++=.+-+
T Consensus 103 ~~l------v~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~ 160 (169)
T COG5130 103 RPL------VCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPL 160 (169)
T ss_pred Ccc------ccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCcc
Confidence 341 1211 556677788888899999999999999999999999999999976654
No 5
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=63.74 E-value=28 Score=24.55 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=11.9
Q ss_pred ccccccchhhhhhcCC
Q 031200 59 RTVRQFSPHLAAKMRP 74 (164)
Q Consensus 59 ~~lr~f~p~~~~k~r~ 74 (164)
+.++.--|.++++++.
T Consensus 16 r~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 16 RQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHhcCcHHHHHhcc
Confidence 3455567889999996
No 6
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=61.32 E-value=56 Score=29.85 Aligned_cols=35 Identities=29% Similarity=0.583 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhccCcchH--HHhhhhhHhHHHHhhc
Q 031200 125 LAVGLLATILHASFRTPNLK--ARLNTFREEFRAVWRN 160 (164)
Q Consensus 125 l~l~~~lvllHAslR~rNlK--nkl~n~~E~fr~v~~~ 160 (164)
+..|.+.-++-|-.|.|+.+ .++.+. |++|..|++
T Consensus 312 i~~G~~ag~vea~~r~p~v~D~~~l~~~-~s~~~~~~n 348 (380)
T TIGR00261 312 IATGMVAGLVEAYIRKPTVKDFENLQEA-ESIKEYFKN 348 (380)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHhhc-ccHHHHHhc
Confidence 56777888899999999776 466666 899999986
No 7
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=53.15 E-value=22 Score=29.78 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=24.9
Q ss_pred hhhhHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhc
Q 031200 7 CSYRTNYFIMI---TVILGLGFLRRPVAIIAALLTALSIAFLNDSFA 50 (164)
Q Consensus 7 lYYqtNY~li~---l~i~~l~~l~~P~~li~~~~~~~~~~fl~~~fa 50 (164)
.|+++|..++. .++++++..++...++..+++++.|...+-.|.
T Consensus 195 ~~~~ln~~ll~~~~~~l~i~s~~t~~~q~la~lvl~~I~iyi~v~y~ 241 (248)
T PF11368_consen 195 IYFKLNQYLLPILYILLFIYSLLTGENQLLAILVLIIIWIYINVMYY 241 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH
Confidence 57887855433 333455566655556666656666766653333
No 8
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=48.78 E-value=50 Score=24.53 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=32.2
Q ss_pred heecCCCceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHhhccCcchHHHhhhhhHhHHHHhhcc
Q 031200 90 IYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLA-TILHASFRTPNLKARLNTFREEFRAVWRNY 161 (164)
Q Consensus 90 v~i~~~~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~l-vllHAslR~rNlKnkl~n~~E~fr~v~~~~ 161 (164)
.-+-|-||.++++-..++.. +.+-.. ..++..+++.+ ...|..+| .+++.=..|++|++=|
T Consensus 16 ~Ll~Ga~R~l~i~~g~la~~-l~~g~~----~~~a~~~gl~lw~v~h~~l~------~mAK~DP~~~~V~~Rh 77 (94)
T PRK13823 16 NLFMGGDRELVMFSGLLAGI-LIFVAQ----TWRAALFGIALWFGALFALR------LMAKADPKMRHVYLRH 77 (94)
T ss_pred HhhCCcchHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHH------HHHhcChHHHHHHHHH
Confidence 55678888855443333332 222222 22244444444 67788887 3444456677777644
No 9
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=43.91 E-value=49 Score=20.75 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=16.1
Q ss_pred HhhccCcchHHHhhhhhHhHHH
Q 031200 135 HASFRTPNLKARLNTFREEFRA 156 (164)
Q Consensus 135 HAslR~rNlKnkl~n~~E~fr~ 156 (164)
|-.-+..|+++.+++.+|+||.
T Consensus 23 ~i~~~i~~~~~~~~~em~~fk~ 44 (53)
T PF01484_consen 23 SIYNDIQNFQSELDDEMEEFKE 44 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555889999988888875
No 10
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.64 E-value=48 Score=25.40 Aligned_cols=78 Identities=15% Similarity=-0.010 Sum_probs=46.1
Q ss_pred CCCcccCCCCcchhheecCCCceeehHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcchHH-----Hhhhh
Q 031200 76 LTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKA-----RLNTF 150 (164)
Q Consensus 76 ~~~~~r~~p~~~~~v~i~~~~r~~vv~~l~~~s~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNlKn-----kl~n~ 150 (164)
+|.+.||.+.++- .++. .+...+.+.++..+.+.++.+..+..+.+++..+++.=++-+.+-+|. =+..+
T Consensus 11 ePvV~rGlT~~El--~~~~---~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r~ 85 (111)
T TIGR03750 11 EPVVFRGLTADEL--GVAA---GVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLYRK 85 (111)
T ss_pred CCceecccCHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHHHH
Confidence 4778888885421 1110 001122344556666777777777778888888888888877777773 24444
Q ss_pred hHhHHHHh
Q 031200 151 REEFRAVW 158 (164)
Q Consensus 151 ~E~fr~v~ 158 (164)
.|+..+-|
T Consensus 86 l~~~~~~~ 93 (111)
T TIGR03750 86 LEWKLARL 93 (111)
T ss_pred HHHHHHHc
Confidence 45444443
No 11
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=41.02 E-value=2.5e+02 Score=24.57 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=11.0
Q ss_pred hhhHhHHHHhhcccC
Q 031200 149 TFREEFRAVWRNYSE 163 (164)
Q Consensus 149 n~~E~fr~v~~~~~~ 163 (164)
+..+.-|++-|||++
T Consensus 194 ~~~~~~r~~~~~Y~~ 208 (295)
T PRK12324 194 DTGAKHRKVLEEYSP 208 (295)
T ss_pred hcccccccccCCCCH
Confidence 335668999999953
No 12
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=40.46 E-value=68 Score=23.76 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=25.3
Q ss_pred ehHHhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Q 031200 100 FVLIFSCVSFILWYV-SCGLLTVLWALAVGLLATIL 134 (164)
Q Consensus 100 vv~~l~~~s~~ll~l-~~avl~~l~al~l~~~lvll 134 (164)
+.+..++.|++++.+ .+.++.+.+|+++++++..+
T Consensus 48 FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~~~ 83 (90)
T PF11674_consen 48 FCIFTVLFSFVFLSLKLNTFWAFPLAILISLAITQL 83 (90)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344566677777766 78888888899888776653
No 13
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=36.54 E-value=83 Score=30.45 Aligned_cols=38 Identities=18% Similarity=0.568 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhcc
Q 031200 117 GLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNY 161 (164)
Q Consensus 117 avl~~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~~ 161 (164)
++++++.+..+.+. -++|.||. |+++.++-..+|||--
T Consensus 617 GvvNl~VSF~lAl~-----vAlRSr~t--~i~s~r~I~~~VW~~I 654 (677)
T COG4389 617 GLVNLCVSFSLALF-----VALRSRGT--KIGSIRNIIKSVWNQI 654 (677)
T ss_pred HHHHHHHHHHHHHH-----HHHHhccc--cchhHHHHHHHHHHHH
Confidence 34455545444443 45598876 5888889999999854
No 14
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=36.02 E-value=9.6 Score=32.37 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=21.9
Q ss_pred HHHHHHhhccCcchHHHhhhhhHhHHHHh
Q 031200 130 LATILHASFRTPNLKARLNTFREEFRAVW 158 (164)
Q Consensus 130 ~lvllHAslR~rNlKnkl~n~~E~fr~v~ 158 (164)
++-=+|++||+=|||| ...|..|...|
T Consensus 172 fi~dlhs~FrlLnLKn--dsLRK~fDgLk 198 (226)
T KOG3067|consen 172 FINDLHSGFRLLNLKN--DSLRKRFDGLK 198 (226)
T ss_pred HHhhhcccceeeeccc--hhhhccccchh
Confidence 4456899999999999 77777777766
No 15
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=35.05 E-value=1.8e+02 Score=21.23 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=22.6
Q ss_pred eeehHHhHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhhccCc
Q 031200 98 WVFVLIFSCVSFILWY---VSCGLLTVLWALAVGLLATILHASFRTP 141 (164)
Q Consensus 98 ~~vv~~l~~~s~~ll~---l~~avl~~l~al~l~~~lvllHAslR~r 141 (164)
..+-...+..+..+++ -.+..+-+--.+..+..+-+.--++|+|
T Consensus 38 ~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~irLR 84 (84)
T PF07444_consen 38 IFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETIRLR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444442 2344455555556666666655566654
No 16
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=34.59 E-value=84 Score=23.82 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=26.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhH
Q 031200 115 SCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEF 154 (164)
Q Consensus 115 ~~avl~~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~f 154 (164)
..|..+.++|+.+++....+|..++. --+|..+.+|+|
T Consensus 100 ~~Al~tT~~GL~vai~~~~~~~~l~~--~~~~~~~~~e~~ 137 (139)
T PF01618_consen 100 SVALITTAYGLVVAIPALPFYNYLKR--RVERIIHRMEEF 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 44555677788888888899988874 345555566655
No 17
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=33.46 E-value=25 Score=33.31 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=22.9
Q ss_pred hccCc-chHHHhhhhhHhHHHHhhcccC
Q 031200 137 SFRTP-NLKARLNTFREEFRAVWRNYSE 163 (164)
Q Consensus 137 slR~r-NlKnkl~n~~E~fr~v~~~~~~ 163 (164)
.+|++ .=|+++.+.-+.+..-||+|||
T Consensus 306 viRL~~~~~~~l~~~a~~Il~~Wr~YsD 333 (489)
T TIGR01239 306 VLRLQGEDPGELAEAADHIFRTWQTYSD 333 (489)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHhCCCc
Confidence 35888 4567899999999999999986
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=33.11 E-value=45 Score=29.44 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhc-cCcchHHH
Q 031200 121 VLWALAVGLLATILHASF-RTPNLKAR 146 (164)
Q Consensus 121 ~l~al~l~~~lvllHAsl-R~rNlKnk 146 (164)
..+++.+-+....+.+-. |.+|.|||
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 410 MLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 333444433444444443 44599998
No 19
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=30.64 E-value=1.4e+02 Score=25.71 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhccCcchHHHhhhhhHh
Q 031200 124 ALAVGLLATILHASFRTPNLKARLNTFREE 153 (164)
Q Consensus 124 al~l~~~lvllHAslR~rNlKnkl~n~~E~ 153 (164)
+++++.+.+...=.=|.-++-.|+||..|+
T Consensus 146 ~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~ 175 (237)
T PF13748_consen 146 LILALFLLILPRFARRNYRLYRRLNNRLEK 175 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333333333233334777788887774
No 20
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.96 E-value=1.2e+02 Score=24.25 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=22.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCcchHHH
Q 031200 109 FILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKAR 146 (164)
Q Consensus 109 ~~ll~l~~avl~~l~al~l~~~lvllHAslR~rNlKnk 146 (164)
.++....+.-..++++++++++.-........++.|.|
T Consensus 21 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k 58 (199)
T PF10112_consen 21 TFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRK 58 (199)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 33344444445566677777666655555566676666
No 21
>PF00979 Reovirus_cap: Reovirus outer capsid protein, Sigma 3; InterPro: IPR000153 Reoviruses are double-stranded RNA viruses that lack a membrane envelope. Their capsid is organised in two concentric icosahedral layers: an inner core and an outer capsid layer. The outer capsid is made up of the major proteins mu1 and sigma3, and the minor protein sigma1. The inner core structure is composed of the major core proteins lambda1 and sigma2, core spike protein lambda2, and minor core proteins lambda3 and mu2. The inner core encases the 10 segments of double-stranded RNA (dsRNA) which comprise the genome [].; GO: 0005198 structural molecule activity, 0019058 viral infectious cycle; PDB: 1FN9_A 1JMU_I.
Probab=28.39 E-value=40 Score=30.90 Aligned_cols=21 Identities=19% Similarity=0.610 Sum_probs=18.0
Q ss_pred chHHHhhhhhHhHHHHhhccc
Q 031200 142 NLKARLNTFREEFRAVWRNYS 162 (164)
Q Consensus 142 NlKnkl~n~~E~fr~v~~~~~ 162 (164)
.=+.|++..||-|.++|+||+
T Consensus 285 ~s~~Ka~~yRnl~~~~~~Gw~ 305 (367)
T PF00979_consen 285 GSGKKASHYRNLFMEIWRGWH 305 (367)
T ss_dssp -HHHHHGGGHHHHHHHHHHS-
T ss_pred cccHHHHHHHHHHHHHHhhcC
Confidence 457999999999999999994
No 22
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=28.29 E-value=88 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCc--chHHHhhhhhHhHHH
Q 031200 117 GLLTVLWALAVGLLATILHASFRTP--NLKARLNTFREEFRA 156 (164)
Q Consensus 117 avl~~l~al~l~~~lvllHAslR~r--NlKnkl~n~~E~fr~ 156 (164)
|..+...|+.+++-..+.|--|..| ++.+++|+.-+||-.
T Consensus 166 ALitTA~GL~VAIPAli~yn~f~~ri~~~~~~le~~~~e~~~ 207 (211)
T TIGR02797 166 ALLATAIGLVAAIPAVVIYNVFARSIAGYRALLADASAGVER 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888899999876 677777777776643
No 23
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=28.24 E-value=36 Score=18.78 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=10.8
Q ss_pred hhhhhHhHHHHhhcc
Q 031200 147 LNTFREEFRAVWRNY 161 (164)
Q Consensus 147 l~n~~E~fr~v~~~~ 161 (164)
.++..-.+-+.||||
T Consensus 2 ~~~aa~~IQa~~Rg~ 16 (26)
T smart00015 2 LTRAAIIIQAAWRGY 16 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556678899998
No 24
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=27.60 E-value=2.1e+02 Score=19.75 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHhhhhhHhHH
Q 031200 123 WALAVGLLATILHASFRTPNLKARLNTFREEFR 155 (164)
Q Consensus 123 ~al~l~~~lvllHAslR~rNlKnkl~n~~E~fr 155 (164)
++..+++.+...=+-+=.+.++.+++...++..
T Consensus 34 ~~~l~A~vis~~lS~~ll~~~R~~~~~~ia~~~ 66 (69)
T PF14012_consen 34 VAALLALVISMPLSYVLLRRLRDRASADIAARD 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444333333334477778877777654
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.98 E-value=1.2e+02 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=4.8
Q ss_pred chHHHhhhhhH
Q 031200 142 NLKARLNTFRE 152 (164)
Q Consensus 142 NlKnkl~n~~E 152 (164)
.++.++++..+
T Consensus 52 ~~~k~l~~le~ 62 (68)
T PF06305_consen 52 RLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 26
>PRK10113 cell division modulator; Provisional
Probab=26.91 E-value=23 Score=25.43 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=8.2
Q ss_pred hhHhHHHHhh
Q 031200 150 FREEFRAVWR 159 (164)
Q Consensus 150 ~~E~fr~v~~ 159 (164)
++|.||+||-
T Consensus 29 kmd~frDVW~ 38 (80)
T PRK10113 29 KMDSFRDVWM 38 (80)
T ss_pred hhcchhhhhe
Confidence 5889999993
No 27
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=26.25 E-value=38 Score=32.14 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.2
Q ss_pred hccCc-chHHHhhhhhHhHHHHhhcccC
Q 031200 137 SFRTP-NLKARLNTFREEFRAVWRNYSE 163 (164)
Q Consensus 137 slR~r-NlKnkl~n~~E~fr~v~~~~~~ 163 (164)
.+|++ .=|+++.+.-+.+..-||+|||
T Consensus 309 viRL~~~~~~~l~~~a~~Il~~Wr~YsD 336 (493)
T PRK05270 309 VIRLTSKNKDELIDAADKILEAWRGYSD 336 (493)
T ss_pred EEEeecCCHHHHHHHHHHHHHHHhCCCc
Confidence 35888 3389999999999999999987
No 28
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.50 E-value=2.1e+02 Score=25.76 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhHHH-Hhh
Q 031200 111 LWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRA-VWR 159 (164)
Q Consensus 111 ll~l~~avl~~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~fr~-v~~ 159 (164)
++++.++++..+-+++.-.++.=+|+.+|. =..-.+.++|||+. +|+
T Consensus 243 i~m~i~a~~Ft~~av~~i~~i~kVh~~yRg--sG~sf~kaq~e~~~g~~~ 290 (313)
T KOG3088|consen 243 ILMLIGAGLFTLEAVLSIWVLQKVHSYYRG--SGASFQKAQEEFTTGVMS 290 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHhh
Confidence 455566666555566666677889999994 45778888899875 344
No 29
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.89 E-value=2.1e+02 Score=22.84 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhccCcchHH--HhhhhhHhHHHHhhcc
Q 031200 121 VLWALAVGLLATILHASFRTPNLKA--RLNTFREEFRAVWRNY 161 (164)
Q Consensus 121 ~l~al~l~~~lvllHAslR~rNlKn--kl~n~~E~fr~v~~~~ 161 (164)
...|+.+|+.+-.+-+-|=.+.+|+ |+++..|.-++=.-.|
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~ 53 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEY 53 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 3345555555555666666667888 7777777766554444
No 30
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=24.83 E-value=1.4e+02 Score=21.48 Aligned_cols=8 Identities=25% Similarity=0.850 Sum_probs=4.5
Q ss_pred HHHhhccc
Q 031200 155 RAVWRNYS 162 (164)
Q Consensus 155 r~v~~~~~ 162 (164)
..|++||.
T Consensus 37 ASvykGyt 44 (74)
T PF09964_consen 37 ASVYKGYT 44 (74)
T ss_pred HHHHhccc
Confidence 44566664
No 31
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=24.28 E-value=1.2e+02 Score=27.44 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhccCcc
Q 031200 121 VLWALAVGLLATILHASFRTPN 142 (164)
Q Consensus 121 ~l~al~l~~~lvllHAslR~rN 142 (164)
.+.|..+|+++++++-.+|.|.
T Consensus 346 ~llG~~lg~~~vL~r~~~r~~~ 367 (377)
T PRK10381 346 ALIGGMLACGFVLLRHAMRSRK 367 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4558889999999988999873
No 32
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=23.81 E-value=1.2e+02 Score=22.59 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhccCcchHHHhhhhhHhHH
Q 031200 124 ALAVGLLATILHASFRTPNLKARLNTFREEFR 155 (164)
Q Consensus 124 al~l~~~lvllHAslR~rNlKnkl~n~~E~fr 155 (164)
...+-+.....|-+.|.+.+.+|+++..+|..
T Consensus 72 ~~i~~ll~~~~~l~~~is~le~~i~~L~qeiA 103 (115)
T PF10066_consen 72 LGILFLLVIIFSLYVRISRLEEKIKRLAQEIA 103 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567778999999999999999888764
No 33
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.45 E-value=1.5e+02 Score=20.14 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhc
Q 031200 121 VLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRN 160 (164)
Q Consensus 121 ~l~al~l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~ 160 (164)
+++|.++|..+.++=|.=.-+.++.|+.+..++.+.=...
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~ 44 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKD 44 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766668888888888877665443
No 34
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=23.29 E-value=2e+02 Score=19.25 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhccc
Q 031200 125 LAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYS 162 (164)
Q Consensus 125 l~l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~~~ 162 (164)
++++-..+.++...|. .+..= +..+.+|.-||+|+
T Consensus 19 ~tigPA~~Al~~~~~~--~~~~~-~~~~~~~~f~~~fk 53 (77)
T PF04854_consen 19 FTIGPATAALYYVVRK--WVRDE-EDSYLFRDFWRAFK 53 (77)
T ss_pred HHHHHHHHHHHHHHHH--HHcCC-ccChHHHHHHHHHH
Confidence 3444555566666662 11111 14567777788774
No 35
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=23.07 E-value=1e+02 Score=27.50 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHhhccCc---------chHHHhhhhhHhHHH
Q 031200 131 ATILHASFRTP---------NLKARLNTFREEFRA 156 (164)
Q Consensus 131 lvllHAslR~r---------NlKnkl~n~~E~fr~ 156 (164)
++-+|+..++| .+|+++++.+|+...
T Consensus 30 v~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~ 64 (297)
T COG3452 30 VVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLET 64 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999865 478888888877643
No 36
>PF07557 Shugoshin_C: Shugoshin C terminus; InterPro: IPR011515 This entry represents the C-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011516 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=22.31 E-value=39 Score=19.74 Aligned_cols=11 Identities=55% Similarity=0.933 Sum_probs=8.7
Q ss_pred chhhhhhcCCC
Q 031200 65 SPHLAAKMRPP 75 (164)
Q Consensus 65 ~p~~~~k~r~~ 75 (164)
-|.|.+|||++
T Consensus 16 EPsL~~KmRRp 26 (26)
T PF07557_consen 16 EPSLNTKMRRP 26 (26)
T ss_pred ccchhhhccCC
Confidence 48899999963
No 37
>PRK09885 putative toxin YafO; Provisional
Probab=21.66 E-value=59 Score=25.78 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=22.1
Q ss_pred HHHhhccCcchHHHhhhhhHhHHH
Q 031200 133 ILHASFRTPNLKARLNTFREEFRA 156 (164)
Q Consensus 133 llHAslR~rNlKnkl~n~~E~fr~ 156 (164)
=.|...|.+++..+++...|+||.
T Consensus 107 ~aH~~~~~~~~m~~L~~~Ae~Frn 130 (132)
T PRK09885 107 EPHKLARDNNQMHKLGKMAEAFRM 130 (132)
T ss_pred cHHHHhhhHHHHHHHHHHHHHHhh
Confidence 379999999999999999999985
No 38
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=20.98 E-value=1.5e+02 Score=24.56 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCc--chHHHhhhhhHhH
Q 031200 117 GLLTVLWALAVGLLATILHASFRTP--NLKARLNTFREEF 154 (164)
Q Consensus 117 avl~~l~al~l~~~lvllHAslR~r--NlKnkl~n~~E~f 154 (164)
|..+...|+.+++-.++.|.-|+.+ ++.+.+|+..+++
T Consensus 170 ALitTa~GL~vAIPali~yn~f~~~i~~~~~~me~~~~~l 209 (215)
T TIGR02796 170 ALIATAIGLFAAIPAVIAYNKLSTQVNKIEQRYENFADEF 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888889999999865 4444455444443
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.09 E-value=4.2e+02 Score=20.70 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=6.6
Q ss_pred HHHhhhhhHhHHHH
Q 031200 144 KARLNTFREEFRAV 157 (164)
Q Consensus 144 Knkl~n~~E~fr~v 157 (164)
+++++..-+++.+.
T Consensus 87 ~~~l~~l~~el~~l 100 (191)
T PF04156_consen 87 QQQLQQLQEELDQL 100 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444554443
Done!