Query 031200
Match_columns 164
No_of_seqs 105 out of 171
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kfe_A Meucin-24; alpha-helix, 55.0 3.2 0.00011 23.5 0.4 19 141-159 8-26 (26)
2 3ltl_A Brefeldin A-inhibited g 23.0 45 0.0016 26.8 2.5 34 126-161 146-179 (211)
3 1ku1_A ARF guanine-nucleotide 19.0 59 0.002 26.4 2.3 34 126-161 164-197 (230)
4 1dxs_A P53-like transcription 18.2 32 0.0011 24.1 0.5 19 135-163 44-63 (80)
5 2o2c_A GPI, glucose-6-phosphat 17.4 48 0.0016 30.8 1.6 30 133-162 146-193 (613)
6 3lcn_C MRNA transport factor G 17.2 62 0.0021 18.5 1.5 13 143-155 11-23 (29)
7 1t10_A GPI, glucose-6-phosphat 17.1 46 0.0016 30.9 1.4 30 133-162 145-192 (605)
8 2wu8_A Glucose-6-phosphate iso 16.4 52 0.0018 30.1 1.6 30 133-162 92-139 (549)
9 1r8s_E ARNO; protein transport 16.1 71 0.0024 25.4 2.2 33 127-161 139-171 (203)
10 2cxn_A Glucose-6-phosphate iso 15.6 51 0.0017 30.2 1.3 30 133-162 98-145 (557)
No 1
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=54.98 E-value=3.2 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.7
Q ss_pred cchHHHhhhhhHhHHHHhh
Q 031200 141 PNLKARLNTFREEFRAVWR 159 (164)
Q Consensus 141 rNlKnkl~n~~E~fr~v~~ 159 (164)
.|+|.|++...|..++-|.
T Consensus 8 ~kiK~kl~~akdK~k~~w~ 26 (26)
T 2kfe_A 8 SNLKEKLSGVKEKMKNSXX 26 (26)
T ss_dssp HHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHccCC
Confidence 4899999999999999883
No 2
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=23.03 E-value=45 Score=26.79 Aligned_cols=34 Identities=15% Similarity=0.413 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhcc
Q 031200 126 AVGLLATILHASFRTPNLKARLNTFREEFRAVWRNY 161 (164)
Q Consensus 126 ~l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~~ 161 (164)
.+...++++|-.+..+|+|+|++ .|+|-.--||.
T Consensus 146 iLaySiImLNTDlHn~~vk~kMt--~~~Fi~n~rg~ 179 (211)
T 3ltl_A 146 VLAYSIIMLTTDLHSPQVKNKMT--KEQYIKMNRGI 179 (211)
T ss_dssp HHHHHHHHHHHHHTCTTCCSCCC--HHHHHHHTCSS
T ss_pred HHHHHHHHHhhhhcCccccCCCC--HHHHHHHhhcc
Confidence 34567788999999999999986 58888877775
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=18.97 E-value=59 Score=26.40 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhcc
Q 031200 126 AVGLLATILHASFRTPNLKARLNTFREEFRAVWRNY 161 (164)
Q Consensus 126 ~l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~~ 161 (164)
.+...++++|-.+.+||+|+|++ .|+|..--||.
T Consensus 164 vLaySiImLNTDlHnp~vk~kMT--~~~FikN~rg~ 197 (230)
T 1ku1_A 164 ILSYSIIMLNTDLHNPQVKEHMS--FEDYSGNLKGC 197 (230)
T ss_dssp HHHHHHHHHHHHHTCTTCSSCCC--HHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhccccccCCCC--HHHHHHHhhcc
Confidence 34457788999999999999986 68888777775
No 4
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=18.19 E-value=32 Score=24.14 Aligned_cols=19 Identities=26% Similarity=0.919 Sum_probs=13.5
Q ss_pred HhhccCcchHHHhhhhhHhHH-HHhhcccC
Q 031200 135 HASFRTPNLKARLNTFREEFR-AVWRNYSE 163 (164)
Q Consensus 135 HAslR~rNlKnkl~n~~E~fr-~v~~~~~~ 163 (164)
|++++.+ |++| +.|||--|
T Consensus 44 L~~mkIp----------e~~R~kIWk~l~e 63 (80)
T 1dxs_A 44 LGALKIP----------EQYRMTIWRGLQD 63 (80)
T ss_dssp HHHTTCC----------TTTHHHHHHHHHH
T ss_pred HHhCCCC----------HHHHHHHHhhHHH
Confidence 5666665 7888 88998643
No 5
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A
Probab=17.39 E-value=48 Score=30.84 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=22.0
Q ss_pred HHHhhccCc-c----------------hHHHhhhhhHhHHHH-hhccc
Q 031200 133 ILHASFRTP-N----------------LKARLNTFREEFRAV-WRNYS 162 (164)
Q Consensus 133 llHAslR~r-N----------------lKnkl~n~~E~fr~v-~~~~~ 162 (164)
.+|-++|.| | ...|++.+.|+.|.- |+||+
T Consensus 146 vlH~aLR~~~~~~~~vdg~dv~~~v~~~l~~i~~fa~~vrsg~~~g~t 193 (613)
T 2o2c_A 146 VLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHT 193 (613)
T ss_dssp CCHHHHTCTTCCCCEETTEESHHHHHHHHHHHHHHHHHHHHTCSBCTT
T ss_pred cccHhhcCCCCCCcccCCccccHhHHHHHHHHHHHHHHHHhCCcccCC
Confidence 369999966 2 234788888888775 99984
No 6
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=17.20 E-value=62 Score=18.48 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.4
Q ss_pred hHHHhhhhhHhHH
Q 031200 143 LKARLNTFREEFR 155 (164)
Q Consensus 143 lKnkl~n~~E~fr 155 (164)
||.|+++++|-+.
T Consensus 11 LKKKIEEQr~i~~ 23 (29)
T 3lcn_C 11 LKKKIEEQREILQ 23 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888988888764
No 7
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} SCOP: c.80.1.2
Probab=17.12 E-value=46 Score=30.87 Aligned_cols=30 Identities=30% Similarity=0.690 Sum_probs=21.9
Q ss_pred HHHhhccCc-c----------------hHHHhhhhhHhHHHH-hhccc
Q 031200 133 ILHASFRTP-N----------------LKARLNTFREEFRAV-WRNYS 162 (164)
Q Consensus 133 llHAslR~r-N----------------lKnkl~n~~E~fr~v-~~~~~ 162 (164)
.+|-++|.| | ...|++...|+.|.- |+||+
T Consensus 145 vlH~alR~~~~~~~~vdg~~v~~~v~~~l~~i~~fa~~vrsg~~~g~t 192 (605)
T 1t10_A 145 VLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQT 192 (605)
T ss_dssp CCHHHHTCTTCCCCEETTEEHHHHHHHHHHHHHHHHHHHHHSCSBCTT
T ss_pred hhhHhhhCCCCCCcccCCcccchhHHHHHHHHHHHHHHHHhCCcccCC
Confidence 469999966 2 234788888888774 99984
No 8
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis}
Probab=16.44 E-value=52 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.669 Sum_probs=22.3
Q ss_pred HHHhhccCcc-----------------hHHHhhhhhHhHHH-Hhhccc
Q 031200 133 ILHASFRTPN-----------------LKARLNTFREEFRA-VWRNYS 162 (164)
Q Consensus 133 llHAslR~rN-----------------lKnkl~n~~E~fr~-v~~~~~ 162 (164)
.+|-++|.|. ...|+++..|+.|. -|+||+
T Consensus 92 vlH~alR~~~~~~~~v~g~~v~~~v~~~l~~i~~fa~~vr~g~~~g~~ 139 (549)
T 2wu8_A 92 VLHTALRLPRDAELVVDGQDVVTDVHAVLDAMGAFTDRLRSGEWTGAT 139 (549)
T ss_dssp CCGGGGGCCTTCCCEETTEEHHHHHHHHHHHHHHHHHHHHHTCSBCSS
T ss_pred ceeeeeecCCCCccccCCccchhhHHHHHHHHHHHHHHHHhCCcccCC
Confidence 4799999662 23478888888887 599984
No 9
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=16.09 E-value=71 Score=25.40 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhcc
Q 031200 127 VGLLATILHASFRTPNLKARLNTFREEFRAVWRNY 161 (164)
Q Consensus 127 l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~~ 161 (164)
+...++++|-.+..+|+|+|++ .|+|-.--||.
T Consensus 139 LaySiImLNTDlHn~~vk~kMt--~~~Fi~n~rgi 171 (203)
T 1r8s_E 139 LSYSVIMLNTDLHNPNVRDKMG--LERFVAMNRGI 171 (203)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCC--HHHHHHHTTTT
T ss_pred HHHHHHHhcccccCcccccccC--HHHHHHHhhcc
Confidence 4557788999999999999996 57887777775
No 10
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Probab=15.58 E-value=51 Score=30.23 Aligned_cols=30 Identities=27% Similarity=0.752 Sum_probs=21.4
Q ss_pred HHHhhccCc-c----------------hHHHhhhhhHhHHHH-hhccc
Q 031200 133 ILHASFRTP-N----------------LKARLNTFREEFRAV-WRNYS 162 (164)
Q Consensus 133 llHAslR~r-N----------------lKnkl~n~~E~fr~v-~~~~~ 162 (164)
.+|-++|.| + ...|++...|+.|.- |+||+
T Consensus 98 vlH~alR~~~~~~~~vdg~~v~~~v~~~l~~m~~fa~~vr~g~~~g~~ 145 (557)
T 2cxn_A 98 VLHVALRNRSNTPIKVDGKDVMPEVNRVLDKMKSFCQRVRSGDWKGYT 145 (557)
T ss_dssp CCHHHHTCTTCCCCEETTEESHHHHHHHHHHHHHHHHHHHTTCSBCTT
T ss_pred hhHHHHhCCCCCCcccCCcccchhHHHHHHHHHHHHHHHHhCCcccCC
Confidence 369999966 2 234777888888764 99984
Done!