Query 031200
Match_columns 164
No_of_seqs 105 out of 171
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 16:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031200.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031200hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ku1a_ a.118.3.1 (A:) ARF gua 22.8 20 0.0014 26.8 2.2 33 127-161 153-185 (211)
2 d1r8se_ a.118.3.1 (E:) Exchang 21.5 19 0.0014 26.3 1.8 33 127-161 127-159 (187)
3 d1kf6c_ f.21.2.2 (C:) Fumarate 15.8 1.2E+02 0.0085 21.1 5.0 28 23-50 60-87 (130)
4 d1xsza1 a.118.3.1 (A:1-197) Ra 15.7 41 0.003 24.6 2.6 33 127-161 135-169 (197)
5 d2ftxb1 d.300.1.2 (B:155-213) 14.7 26 0.0019 21.6 1.0 8 8-15 47-54 (59)
6 d1q6oa_ c.1.2.3 (A:) 3-keto-L- 13.5 46 0.0033 22.6 2.2 21 138-158 193-213 (213)
7 d1q50a_ c.80.1.2 (A:) Phosphog 11.9 35 0.0026 28.9 1.3 30 133-162 102-149 (561)
8 d1tv8a_ c.1.28.3 (A:) Molybden 8.0 67 0.0049 23.1 1.5 23 138-160 281-309 (327)
9 d1rkta2 a.121.1.1 (A:83-205) H 6.0 1.2E+02 0.0091 19.6 1.9 24 137-160 35-58 (123)
10 d2bzba1 a.30.7.1 (A:1-54) Hypo 5.9 69 0.005 19.2 0.4 15 140-154 3-17 (54)
No 1
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.76 E-value=20 Score=26.77 Aligned_cols=33 Identities=12% Similarity=0.369 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhcc
Q 031200 127 VGLLATILHASFRTPNLKARLNTFREEFRAVWRNY 161 (164)
Q Consensus 127 l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~~ 161 (164)
+...++++|-.+.+||.|+|++ .|+|..--||.
T Consensus 153 L~ysiimLnTdlHnp~vk~kMt--~~~Fi~n~rgi 185 (211)
T d1ku1a_ 153 LSYSIIMLNTDLHNPQVKEHMS--FEDYSGNLKGC 185 (211)
T ss_dssp HHHHHHHHHHHHTCTTCSSCCC--HHHHHHHTTTC
T ss_pred HHHHHHHHhhhccCCcccCCCC--HHHHHHHHhcC
Confidence 4456778899999999999985 58998888886
No 2
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.52 E-value=19 Score=26.26 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhccCcchHHHhhhhhHhHHHHhhcc
Q 031200 127 VGLLATILHASFRTPNLKARLNTFREEFRAVWRNY 161 (164)
Q Consensus 127 l~~~lvllHAslR~rNlKnkl~n~~E~fr~v~~~~ 161 (164)
+..+++++|..+..+|.|+|++ .|+|..--||.
T Consensus 127 l~~siimLnTdlhn~~~k~kmt--~~~Fi~n~~~~ 159 (187)
T d1r8se_ 127 LSYSVIMLNTDLHNPNVRDKMG--LERFVAMNRGI 159 (187)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCC--HHHHHHHTTTT
T ss_pred HHHHHHHHHhhhcCccccCCCC--HHHHHHHhcCC
Confidence 4556788999999999999986 58888777775
No 3
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=15.82 E-value=1.2e+02 Score=21.14 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=21.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhhc
Q 031200 23 LGFLRRPVAIIAALLTALSIAFLNDSFA 50 (164)
Q Consensus 23 l~~l~~P~~li~~~~~~~~~~fl~~~fa 50 (164)
+.++-||+.++.=++..++.++..-+|+
T Consensus 60 v~flqnP~vv~lniiaLaa~L~Ha~TwF 87 (130)
T d1kf6c_ 60 VDFLQNPVIVIINLITLAAALLHTKTWF 87 (130)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789888887777777777766676
No 4
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=15.72 E-value=41 Score=24.64 Aligned_cols=33 Identities=12% Similarity=0.375 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhccCcch--HHHhhhhhHhHHHHhhcc
Q 031200 127 VGLLATILHASFRTPNL--KARLNTFREEFRAVWRNY 161 (164)
Q Consensus 127 l~~~lvllHAslR~rNl--Knkl~n~~E~fr~v~~~~ 161 (164)
+...++++|-.+..||+ |+|++ .|+|..--||.
T Consensus 135 L~~siimLnTDlHnp~v~~k~kMt--~~~Fi~n~r~~ 169 (197)
T d1xsza1 135 LAFQTIMLNTDLHNPSIPEKNKMT--VDGLKRNLRGG 169 (197)
T ss_dssp HHHHHHHHHHHHHCTTSCGGGSCC--HHHHHHHTTTT
T ss_pred HHHHHHHHhccccCccccccCCCC--HHHHHHHHhcc
Confidence 44567889999999999 55666 67888777876
No 5
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.69 E-value=26 Score=21.62 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=6.7
Q ss_pred hhhHHHHH
Q 031200 8 SYRTNYFI 15 (164)
Q Consensus 8 YYqtNY~l 15 (164)
||.|||+-
T Consensus 47 fF~tnYiW 54 (59)
T d2ftxb1 47 FYKTKYIW 54 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999973
No 6
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}
Probab=13.50 E-value=46 Score=22.57 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=19.5
Q ss_pred ccCcchHHHhhhhhHhHHHHh
Q 031200 138 FRTPNLKARLNTFREEFRAVW 158 (164)
Q Consensus 138 lR~rNlKnkl~n~~E~fr~v~ 158 (164)
++..|-+..+++.+|+++++|
T Consensus 193 ~~a~dp~~a~~~~~~~i~~~~ 213 (213)
T d1q6oa_ 193 RDAASPVEAARQFKRSIAELW 213 (213)
T ss_dssp HTSSCHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHHhC
Confidence 577899999999999999999
No 7
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania mexicana [TaxId: 5665]}
Probab=11.89 E-value=35 Score=28.92 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=22.4
Q ss_pred HHHhhccCcc-----------------hHHHhhhhhHhHHHH-hhccc
Q 031200 133 ILHASFRTPN-----------------LKARLNTFREEFRAV-WRNYS 162 (164)
Q Consensus 133 llHAslR~rN-----------------lKnkl~n~~E~fr~v-~~~~~ 162 (164)
.+|-++|.+. -.+|+.+..|.+|.. |||++
T Consensus 102 vlH~aLR~~~~~~~~~~~~~~~~~v~~~l~km~~f~~~i~~g~~~g~~ 149 (561)
T d1q50a_ 102 VLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQT 149 (561)
T ss_dssp CCHHHHTCTTCCCCEETTEEHHHHHHHHHHHHHHHHHHHHTTCSBCTT
T ss_pred cCcHHHhCCCCCCCcCchhhhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5699999872 246777778888766 88885
No 8
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=8.05 E-value=67 Score=23.12 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=14.7
Q ss_pred ccCcchHHHh------hhhhHhHHHHhhc
Q 031200 138 FRTPNLKARL------NTFREEFRAVWRN 160 (164)
Q Consensus 138 lR~rNlKnkl------~n~~E~fr~v~~~ 160 (164)
...-|+|+.+ ++..|.|+++|+.
T Consensus 281 ~~~~n~~~~l~~~~~~~~l~~~~~~iw~~ 309 (327)
T d1tv8a_ 281 VDGFNVKAFIRSGVTDEELKEQFKALWQI 309 (327)
T ss_dssp SCCCCHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 3334666654 3346889999963
No 9
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=6.00 E-value=1.2e+02 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred hccCcchHHHhhhhhHhHHHHhhc
Q 031200 137 SFRTPNLKARLNTFREEFRAVWRN 160 (164)
Q Consensus 137 slR~rNlKnkl~n~~E~fr~v~~~ 160 (164)
+.|.|.+|..+.+..|.+++.+.+
T Consensus 35 a~Rdpeir~~~~~~~~~~~~~l~~ 58 (123)
T d1rkta2 35 AWRNEERRQYLEKRYDLFVERFSR 58 (123)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHH
No 10
>d2bzba1 a.30.7.1 (A:1-54) Hypothetical protein BAS1536 {Bacillus anthracis [TaxId: 1392]}
Probab=5.92 E-value=69 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=0.0
Q ss_pred CcchHHHhhhhhHhH
Q 031200 140 TPNLKARLNTFREEF 154 (164)
Q Consensus 140 ~rNlKnkl~n~~E~f 154 (164)
+++|.++++++.||.
T Consensus 3 m~kL~~~IE~KK~EL 17 (54)
T d2bzba1 3 MGQLKNKIENKKKEL 17 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Done!