BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031201
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD L KLLLIGDSGVGK+C+L R KIRTIELDGKRIKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164
+++ KR V +G+ LA +YGIKF ET + I
Sbjct: 125 VND-KRQVSKERGEKLALDYGIKFMETSAKANI 156
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
D L KLLLIGDSGVGK+C+L R KIRTIELDGKRIKLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
GQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 133 DESKRAVPTSKGQALADEYGIKFFETVMQRQI 164
++ KR V +G+ LA +YGIKF ET + I
Sbjct: 124 ND-KRQVSKERGEKLALDYGIKFMETSAKANI 154
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 182 bits (463), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 122 DL-TTKKVVDYTTAKEFADSLGIPFLET 148
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 122 DL-TTKKVVDYTTAKEFADSLGIPFLET 148
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 132 DL-TTKKVVDYTTAKEFADSLGIPFLET 158
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 141 DL-TTKKVVDYTTAKEFADSLGIPFLET 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK
Sbjct: 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 149 DL-TTKKVVDYTTAKEFADSLGIPFLET 175
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 180 bits (456), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGK+CLLLR KIRTIELDGK IKLQIWD
Sbjct: 12 EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 132 DL-TTKKVVDYTTAKEFADSLGIPFLET 158
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 179 bits (454), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTI L+ K +KLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD SF+N++ WI+ I+++A +NVNK+LVGNK
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKC 124
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ SKR V + +G+ LAD +GIKF ET
Sbjct: 125 DL-VSKRVVTSDEGRELADSHGIKFIET 151
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 179 bits (454), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 125 DL-TTKKVVDNTTAKEFADSLGIPFLET 151
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 179 bits (453), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 125 DL-TTKKVVDNTTAKEFADSLGIPFLET 151
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVG K
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKC 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ +K+ V + + AD GI F ET
Sbjct: 124 DL-TTKKVVDYTTAKEFADSLGIPFLET 150
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 175 bits (444), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KLLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
FRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTK 119
Query: 137 RAVPTSKGQALADEYGIKFFET 158
+ V + + AD GI F ET
Sbjct: 120 KVVDYTTAKEFADSLGIPFLET 141
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 107/147 (72%), Gaps = 2/147 (1%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD ++K+LLIGDSGVGKSCLL+R KI+T++++GK++KLQ+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D +LVGNK+D
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
M+ R V +G+ALA E GI F E+
Sbjct: 137 ME--TRVVTADQGEALAKELGIPFIES 161
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 172 bits (437), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 106/146 (72%), Gaps = 2/146 (1%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
D ++K+LLIGDSGVGKSCLL+R KI+T++++GK++KLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
GQERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D +LVGNK+DM
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
+ R V +G+ALA E GI F E+
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIES 144
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 105/145 (72%), Gaps = 2/145 (1%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
++K+LLIGDSGVGKSCLL+R KI+T++++GK++KLQ+WDTAG
Sbjct: 6 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D +LVGNK+DM+
Sbjct: 66 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 125
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
R V +G+ALA E GI F E+
Sbjct: 126 --TRVVTADQGEALAKELGIPFIES 148
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 166 bits (421), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
D + K+LLIGDSGVGKSCLL+R KI+T++++GK++KLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
GQERFRTITTAYYRGA GI+LVYD+TDE +F NI+ W + + +HA+D +LVGNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
+ R V +G+ALA E GI F E+
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIES 144
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 166 bits (420), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
D + K+LLIGDSGVGKSCLL+R KI+T++++GK++KLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
GQERFRTITTAYYRGA GI+LVYDVTDE +F NI+ W + + +HA+D +LVGNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
+ R V +G+ALA E GI F E+
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIES 144
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIG+SGVGKSCLLLR KI+T+ELDGK +KLQIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+ V K+LVGNK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ + KR V + AD + F ET
Sbjct: 124 DLKD-KRVVEYDVAKEFADANKMPFLET 150
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIG+SGVGKSCLLLR KI+T+ELDGK +KLQIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+ V K+LVGNK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ + KR V + AD + F ET
Sbjct: 124 DLKD-KRVVEYDVAKEFADANKMPFLET 150
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L KLLLIG+SGVGKSCLLLR KI+T+ELDGK +KLQIWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+ V K+LVGNK
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ + KR V + AD + F ET
Sbjct: 137 DLKD-KRVVEYDVAKEFADANKMPFLET 163
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 91/115 (79%)
Query: 18 LLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERF 77
LLLIGDSGVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
RTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
++D + KLL+IG+S VGK+ L R K++T+ KR+KLQIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164
DM+E +R VPT KGQ LA++ G FFE + I
Sbjct: 139 DMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENI 171
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
DYD L KLL+IGDSGVGKS LLLR KIRT+E++G+++KLQIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFRTIT+ YYRG G+++VYDVT SF N++ W+ I Q+ D+V ++LVGNK
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKN 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164
D D ++ V T A + GI+ FET + +
Sbjct: 124 D-DPERKVVETEDAYKFAGQMGIQLFETSAKENV 156
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
++D + K+L+IG+S VGK+ L R K++TI + KRIKLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164
DM E +R V + +G+ LAD G +FFE + I
Sbjct: 121 DM-EDERVVSSERGRQLADHLGFEFFEASAKDNI 153
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
D + KLLLIG+S VGK+ L R K++T+ KRIKLQIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
GQER+RTITTAYYRGAMG LL+YD+ ++ SF +++W I+ ++ DN +LVGNK D+
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFETVMQRQI 164
E +R VP G+ LAD+ G +FFE + I
Sbjct: 140 -EDERVVPAEDGRRLADDLGFEFFEASAKENI 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 145 bits (367), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
DYD L K++LIGDSGVGKS LL R RT+E++GKRIK QIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQER+R IT+AYYRGA+G L+VYD++ SS+ N +W+ + ++A DNV L+GNK+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ RAVPT + + A E + F ET
Sbjct: 129 DLAH-LRAVPTEESKTFAQENQLLFTET 155
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 145 bits (366), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L K++LIGDSGVGKS LL R R+I++DGK IK QIWD
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQER+R IT+AYYRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+
Sbjct: 85 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ RAVPT + +A A++ G+ F ET
Sbjct: 145 DL-RHLRAVPTDEARAFAEKNGLSFIET 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
Y L K ++IGD+GVGKSCLLL+ R I +DGK+IKLQIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQE FR+IT +YYRGA G LLVYD+T +FN++ W+ + QH++ N+ +L+GNK+D
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+ ES+R V +G+A A E+G+ F ET
Sbjct: 127 L-ESRREVKKEEGEAFAREHGLIFMET 152
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD L K++LIGDSGVGKS LL R R+I++DGK IK QIWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQER+R IT+AYYRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+D
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+ RAVPT + +A A++ G+ F ET
Sbjct: 137 L-RHLRAVPTDEARAFAEKNGLSFIET 162
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L K ++IGD+GVGKSCLLL+ R + +DGK+IKLQIWDTAGQ
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
E FR+IT +YYRGA G LLVYD+T +FN++ +W+ + QH+S N+ +L+GNK+D+ E
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-E 139
Query: 135 SKRAVPTSKGQALADEYGIKFFET 158
S+R V +G+A A E+G+ F ET
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMET 163
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 142 bits (358), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L K++LIGDSGVGKS LL R R+I++DGK IK QIWD
Sbjct: 4 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAG ER+R IT+AYYRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+
Sbjct: 64 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ RAVPT + +A A++ G+ F ET
Sbjct: 124 DL-RHLRAVPTDEARAFAEKNGLSFIET 150
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L K++LIGDSGVGKS LL R R+I++DGK IK QIWD
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAG ER+R IT+AYYRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+
Sbjct: 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ RAVPT + +A A++ G+ F ET
Sbjct: 145 DL-RHLRAVPTDEARAFAEKNGLSFIET 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD L K++LIGDSGVGKS LL R R+I++DGK IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQER+R IT+AYYRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+ RAVPT + +A A++ + F ET
Sbjct: 122 L-RHLRAVPTDEARAFAEKNNLSFIET 147
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L K++LIGDSGVGKS LL R R+I++DGK IK QIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAG ER+R IT+AYYRGA+G LLVYD+ ++ N+ W++ + HA N+ LVGNK+
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ RAVPT + +A A++ G+ F ET
Sbjct: 121 DL-RHLRAVPTDEARAFAEKNGLSFIET 147
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+YD L K++LIGDSGVGKS LL R R+I++DGK IK QIWD
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAG ER+R IT+AYYRGA+G LLVYD+ ++ N+ W++ + HA N+ LVGNK+
Sbjct: 67 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 126
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ RAVPT + +A A++ G+ F ET
Sbjct: 127 DL-RHLRAVPTDEARAFAEKNGLSFIET 153
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
+D K+L+IG+S VGK+ L R K++TI + KRIKLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AG ER+RTITTAYYRGA G +L YD+T+E SFN +++W I+ ++ DN +LVGNK D
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164
E +R V + +G+ LAD G +FFE + I
Sbjct: 125 X-EDERVVSSERGRQLADHLGFEFFEASAKDNI 156
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD L KL+L+GD+ VGK+C++ R ++T+E+ GKR+KLQIWDT
Sbjct: 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQERFRTIT +YYR A G +L YD+T SSF ++ +WI ++ ++A N+ ++L+GNK+D
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 132 MDESKRAVPTSKGQALADEYGI 153
+ E R V ++ Q+LA+ Y I
Sbjct: 146 LSE-LREVSLAEAQSLAEHYDI 166
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
DYD L K++LIGDSGVGKS LL R RTIE++ K+IK QIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAG ER+R IT+AYYRGA+G L+VYD++ SS+ N +W+ + ++A DNV L+GNK+
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ RAVPT + + A E + F ET
Sbjct: 126 DL-AHLRAVPTDEAKNFAMENQMLFTET 152
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
DYD L K++LIG++GVGK+CL+ R I+T+E++G+++KLQIWD
Sbjct: 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFR+IT +YYR A ++L YD+T E SF + W+R IEQ+AS+ V VLVGNK
Sbjct: 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ E +R V + + ++ + + ET
Sbjct: 142 DLAE-RREVSQQRAEEFSEAQDMYYLET 168
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 136 bits (342), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXX-XKIRTIELDGKRIKLQIWD 70
YD K++L+GDSGVGK+CLL+R + + +++DG ++KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFR++T AYYR A +LL+YDVT+++SF+NI+ W+ I ++A +V +L+GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D +R V G+ LA EYG+ F ET
Sbjct: 127 D-SAHERVVKREDGEKLAKEYGLPFMET 153
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 12/159 (7%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------D 60
DYD LIK L +GDSGVGK+ +L + + + +
Sbjct: 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNWI ++ HA S+
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
N + VL GNK+D+ E +RAV + + LA++YGI +FET
Sbjct: 127 NPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFET 164
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+Y + K ++IGD GVGKSCLL + R IE+ G++IKLQIWD
Sbjct: 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQERFR +T +YYRGA G L+VYD+T S++N++ +W+ + + N +L+GNKA
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFE 157
D+ E++R V + + A+E G+ F E
Sbjct: 131 DL-EAQRDVTYEEAKQFAEENGLLFLE 156
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 12/159 (7%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK-------- 62
DYD LIKLL +GDSGVGK+ L R + + + + +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 63 --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+ ++ +A +
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
N + VL+GNKAD+ + +R V + + LAD+YGI +FET
Sbjct: 141 NPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFET 178
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
+Y + K ++IGD GVGKSCLL + R IE+ G++IKLQIWD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQ RFR +T +YYRGA G L+VYD+T S++N++ +W+ + + N +L+GNKA
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFE 157
D+ E++R V + + A+E G+ F E
Sbjct: 146 DL-EAQRDVTYEEAKQFAEENGLLFLE 171
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K++L GD+ VGKS L+R +++T+ +DG+R LQ+WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM---- 132
FR+I +Y+R A G+LL+YDVT E SF NIR W+ IE A + V +LVGNKAD+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 133 -DESKRAVPTSKGQALADEYGIKFFET 158
E ++ VP G+ LA YG F ET
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCET 176
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 12/159 (7%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
DYD LIKLL +GDSGVGK+ L R + + + D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63 --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+ ++ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
N + VL+GNKAD+ + +R V + + LA++YGI +FET
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFET 164
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
DY+ + K++LIG+SGVGK+ LL R RT+ L +K QIWD
Sbjct: 6 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 65
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAG ER+R IT+AYYRGA+G LLV+D+T ++ + W++ + HA + +LVGNK+
Sbjct: 66 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 125
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ ++ R VPT + + A+ G+ F ET
Sbjct: 126 DLSQA-REVPTEEARMFAENNGLLFLET 152
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
DY+ + K++LIG+SGVGK+ LL R RT+ L +K QIWD
Sbjct: 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAG ER+R IT+AYYRGA+G LLV+D+T ++ + W++ + HA + +LVGNK+
Sbjct: 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 140
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ ++ R VPT + + A+ G+ F ET
Sbjct: 141 DLSQA-REVPTEEARMFAENNGLLFLET 167
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 12/159 (7%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
DYD LIKLL +GDSGVGK+ L R + + + D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63 --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+ ++ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
N + VL+GNKAD+ + +R V + + LA++YGI +FET
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFET 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 4 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+ +F +NW++ +++ AS N+ L GNKAD+
Sbjct: 64 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL- 122
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
SKRAV + QA AD+ + F ET
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMET 147
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL-DGKRIKLQIWD 70
YD L K++LIGDSGVGKS LL R ++I+L + K IK QIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
TAGQER+R IT+AYYRGA+G LLVYD+T ++SF NI W++ + +A N+ +LVGNK+
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D+ + R + + A + + F ET
Sbjct: 124 DL-KHLRVINDNDATQYAKKEKLAFIET 150
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
D +++++IG GVGK+ L+ R KI+T+EL GK+I+LQIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
GQERF +IT+AYYR A GI+LVYD+T + +F+++ W++ I+++AS++ +LVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 133 DESKRAVPTSKGQALADEY-GIKFFE 157
E+ R + +G+ A + G++F E
Sbjct: 144 -ETDREITRQQGEKFAQQITGMRFCE 168
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 2 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 61
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+ +F +NW++ +++ AS N+ L GNKAD+
Sbjct: 62 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL- 120
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
SKRAV + QA AD+ + F ET
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMET 145
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD L K L+IG++G GKSCLL + + I + GK +KLQIWDT
Sbjct: 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 66
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQERFR++T +YYRGA G LLVYD+T ++N + NW+ + AS N+ +L GNK D
Sbjct: 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+D + R V + A E + F ET
Sbjct: 127 LD-ADREVTFLEASRFAQENELMFLET 152
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 6 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 66 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 124
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMET 149
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMET 148
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD L K L+IG++G GKSCLL + + I + GK +KLQIWDT
Sbjct: 8 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AGQERFR++T +YYRGA G LLVYD+T ++N + NW+ + AS N+ +L GNK D
Sbjct: 68 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+D + R V + A E + F ET
Sbjct: 128 LD-ADREVTFLEASRFAQENELMFLET 153
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 6 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 66 QERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 124
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXET 149
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 5 CQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMET 148
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 5 CQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMET 148
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 5 CQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMET 148
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 5 CQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMET 148
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 5 CQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMET 148
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 11 DYDCL--IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQI 68
D D L +K+L+IG+SGVGKS LLLR K++TI +DG + KL I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVG 127
WDTAGQERFRT+T +YYRGA G++LVYDVT +F + NW+ +E + + N + LVG
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFE 157
NK +D+ R V ++G A ++ F E
Sbjct: 129 NK--IDKENREVDRNEGLKFARKHSXLFIE 156
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 119 bits (298), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 12/159 (7%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
DYD LIKLL +GDSGVGK+ L R + + + D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63 --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW ++ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
N + VL+GNKAD+ + +R V + + LA++YGI +FET
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFET 164
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Query: 12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
YD L K L+IG++G GKSCLL + + I + GK +KLQIWDT
Sbjct: 5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
AG ERFR++T +YYRGA G LLVYD+T ++N + NW+ + AS N+ +L GNK D
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+D + R V + A E + F ET
Sbjct: 125 LD-ADREVTFLEASRFAQENELMFLET 150
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 4 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
ER+ ++ YYRGA ++VYD+T+ +F +NW++ +++ AS N+ L GNKAD+
Sbjct: 64 LERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL- 122
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
SKRAV + QA AD+ + F ET
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMET 147
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 12/159 (7%)
Query: 11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
DYD LIKLL +GDSGVGK+ L R + + + D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63 --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW ++ +A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
N + VL+GNKAD+ + +R V + + LA++YGI +FET
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFET 164
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +T+ LD +K +IWDTAG
Sbjct: 4 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
ER+ ++ YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+
Sbjct: 64 LERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 122
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KRAV + Q+ AD+ + F ET
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMET 147
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
D L K L+IG +G GKSCLL + R + + GK +KLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
GQERFR++T +YYRGA G LLVYD+T ++N++ W+ + AS N+ +L GNK D+
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
D +R V + A E + F ET
Sbjct: 143 D-PEREVTFLEASRFAQENELMFLET 167
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
+ K+++IGDS VGK+CL R + R +++DG+RIK+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 75 ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM 132
ERFR ++ YYR ++ VYD+T+ +SF+++ WI +QH ++++ ++LVGNK D+
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
S VPT Q AD + + FET
Sbjct: 140 -RSAIQVPTDLAQKFADTHSMPLFET 164
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
+ K+++IGDS VGK+CL R + R +++DG+RIK+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 75 ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM 132
ERFR ++ YYR ++ VYD T+ +SF+++ WI +QH ++++ ++LVGNK D+
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
S VPT Q AD + FET
Sbjct: 149 -RSAIQVPTDLAQKFADTHSXPLFET 173
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
C KL+L+G+S VGKS L+LR +++ LD +K +IWDTAG
Sbjct: 7 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAG 66
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
QER+ ++ YYRGA ++VYD+T++ +F + W++ +++ AS ++ L GNKAD+
Sbjct: 67 QERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL- 125
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+KR V + QA AD+ + F ET
Sbjct: 126 ANKRMVEYEEAQAYADDNSLLFMET 150
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IKL+L+G++ VGKS ++LR + + ++ +K +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--MD 133
RF ++ YYR A L+VYDVT SF R+W++ + + AS ++ LVGNK D +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
+R V +G+ LA+E G+ FFET
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFET 148
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 10/158 (6%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIK-LQIWDTAG 73
++K++++GDSGVGK+ L+ R + + +DG ++ +Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK------VLVG 127
QERF+++ A+YRGA +LVYDVT+ SSF NI++W HA NVN V++G
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILG 125
Query: 128 NKADMDESKRAVPTSKGQALADEYG-IKFFETVMQRQI 164
NK D +ESK+ V Q LA G I F T + I
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
K++L+G+ VGK+ L+LR + + + GKR+ L IWDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RF + YYR + G +LVYD+TDE SF ++NW++ + + + + +VGNK D+ E
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 125
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
+R V + ++ A+ G K + T
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHT 148
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
K++L+G+ VGK+ L+LR + + + GKR+ L IWDTAGQE
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RF + YYR + G +LVYD+TDE SF ++NW++ + + + + +VGNK D+ E
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 139
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
+R V + ++ A+ G K + T
Sbjct: 140 ERHVSIQEAESYAESVGAKHYHT 162
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+L+GD G GKS L+LR +T+ ++ +K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
+ ++ YYRGA ++V+DVT+++SF + W++ ++ + N+ L GNK+D+ +++
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 137 RAVPTSKGQALADEYGIKFFET 158
+ V Q A E G+ F ET
Sbjct: 134 K-VTAEDAQTYAQENGLFFMET 154
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
K++L+G+ VGK+ L+LR + + + GKR+ L IWDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RF + YYR + G +LVYD+TDE SF ++NW++ + + + + +VGNK D+ E
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 125
Query: 136 KRAVPTSKGQALADEYGIKFFETVMQR 162
+R V + ++ A+ G K + T ++
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQ 152
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+K+ L+GD+GVGKS ++ R +T++ + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR + YYRG+ ++VYD+T E +F+ ++NW+R + QH ++ + GNK D+ +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 KRAVPTSKGQALADEYGIKFFETVMQRQI 164
R V + AD F ET + I
Sbjct: 126 -REVMERDAKDYADSIHAIFVETSAKNAI 153
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+K+ L+GD+GVGKS ++ R +T+ + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RF ++ YYRG+ ++VYD+T + SF ++ W++ +++H +N+ + GNK D+ +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 136 KRAVPTSKGQALADEYGIKFFETVMQRQI 164
R VP + A+ G ET + I
Sbjct: 144 -REVPLKDAKEYAESIGAIVVETSAKNAI 171
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L K++L+GD GVGKS L+ R + +E+DG + +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
ERFR++ T +YRG+ LL + V D SF N+ NW + +A ++ V++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFET 158
D+ E R V T + QA + G +FET
Sbjct: 131 DIKE--RQVSTEEAQAWCKDNGDYPYFET 157
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L K++L+GD GVGKS L+ R + +E+DG + +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
ERFR++ T +YRG+ LL + V D SF N+ NW + +A ++ V++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFET 158
D+ S+R V T + QA + G +FET
Sbjct: 127 DI--SERQVSTEEAQAWCRDNGDYPYFET 153
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 1/149 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+K+ L+GD+GVGKS ++ R +T++ + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR + YYRG+ ++VYD+T E +F+ ++NW+R + QH ++ + GNK D+ +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 136 KRAVPTSKGQALADEYGIKFFETVMQRQI 164
R V + AD F ET + I
Sbjct: 127 -REVMERDAKDYADSIHAIFVETSAKNAI 154
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L K++L+GD GVGKS L+ R + +E+DG + +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
ERFR++ T +YRG+ LL + V D SF N+ NW + +A ++ V++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFET 158
D+ S+R V T + QA + G +FET
Sbjct: 129 DI--SERQVSTEEAQAWCRDNGDYPYFET 155
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L+K++L+GD GVGKS L+ R R +E+DG+ + LQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
ERF+++ T +YRGA LL + V D SF N+ NW + +A ++ V++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 131 DMDESKRAVPTSKGQALADEYG 152
D ++ R V T + Q E G
Sbjct: 127 DKED--RQVTTEEAQTWCMENG 146
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+ +G+ VGK+ L+ R +T+ L+ + ++LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR++ +Y R + ++VYD+T+ +SF+ WI ++ +V +LVGNK D+ +
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD- 133
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
KR V T +G+ A E + F ET
Sbjct: 134 KRQVSTEEGERKAKELNVMFIET 156
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+ +G+ VGK+ ++ R +T+ LD ++LQ+WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
FR++ +Y R + ++VYD+T+ SF N WI++I +V LVGNK D+ +
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL- 121
Query: 137 RAVPTSKGQALADEYGIKFFET 158
R V +G A EY F ET
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHET 143
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+ +G+ VGK+ L+ R +T+ L+ + I+LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ +
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
KR V +G+ A E + F ET
Sbjct: 126 KRQVSIEEGERKAKELNVMFIET 148
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+ +G+ VGK+ L+ R +T+ L+ + ++LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ +
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 120
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
KR V +G+ A E + F ET
Sbjct: 121 KRQVSIEEGERKAKELNVMFIET 143
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+ +G+ VGK+ L+ R +T+ L+ + ++LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ +
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD- 121
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
KR + +G+ A E + F ET
Sbjct: 122 KRQITIEEGEQRAKELSVMFIET 144
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L+K++++GDSGVGK+ L+ + + + +D + + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
ERF+++ A+YRGA +LV+DVT ++F + +W AS +N V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETVMQRQI 164
D++ R V T + QA + I +FET + I
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAI 160
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L+K++++GDSGVGK+ L+ + + + +D + + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
ERF+++ A+YRGA +LV+DVT ++F + +W AS +N V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETVMQRQI 164
D++ R V T + QA + I +FET + I
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAI 160
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L+K++++GDSGVGK+ L+ + + + +D + + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
ERF+++ A+YRGA +LV+DVT ++F + +W AS +N V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETVMQRQI 164
D + R V T + QA + I +FET + I
Sbjct: 128 DFE--NRQVATKRAQAWCYSKNNIPYFETSAKEAI 160
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+ +G+ VGK+ L+ R +T+ L+ + I+LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ +
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 132
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
KR V +G+ A E + F ET
Sbjct: 133 KRQVSIEEGERKAKELNVMFIET 155
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+ +G+ VGK+ L+ R +T+ L+ + ++LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ +
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
KR V +G+ A E + F ET
Sbjct: 126 KRQVSIEEGERKAKELNVMFIET 148
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+ +G+ VGK+ L+ R +T+ L+ + ++LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
RFR++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 135
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
KR V +G+ A E + F ET
Sbjct: 136 KRQVSIEEGERKAKELNVMFIET 158
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L+K++++GDSGVGK+ L+ + + + +D + + +QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
ERF+++ A+YRGA +LV+DVT ++F + +W AS +N V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETVMQRQI 164
D++ R V T + QA + I +FET + I
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAI 160
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK++++G+ VGKS ++ R R I+++ + ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD-MDE 134
F IT AYYRGA +LV+ TD SF I +W + D + LV NK D +D+
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDD 124
Query: 135 SKRAVPTSKGQALADEYGIKFFETVMQRQI 164
S + + + LA ++F+ T ++ +
Sbjct: 125 S--CIKNEEAEGLAKRLKLRFYRTSVKEDL 152
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
L K++++G GVGKS L L+ + + + LDG+ +++ I DTAG
Sbjct: 6 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 64
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKA 130
E + I Y+R G LLV+ +T+ SF R I ++ D + ++VGNK+
Sbjct: 65 LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKS 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D++E +R VP + ++ A+E+G+++ ET
Sbjct: 124 DLEE-RRQVPVEEARSKAEEWGVQYVET 150
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
L K++++G GVGKS L L+ + + + LDG+ +++ I DTAG
Sbjct: 2 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 60
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKA 130
E + I Y+R G LLV+ +T+ SF R I ++ D + ++VGNK+
Sbjct: 61 LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKS 119
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFET 158
D++E +R VP + ++ A+E+G+++ ET
Sbjct: 120 DLEE-RRQVPVEEARSKAEEWGVQYVET 146
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + + +DG+ L I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
+ + Y R G L V+ + + SF +I ++ I++ S++V VLVGNK+D+
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--P 122
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
R V T + Q LA YGI F ET
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIET 145
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + + +DG+ L I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
+ + Y R G L V+ + + SF +I ++ I++ S++V VLVGNK D+
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--P 122
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
R V T + Q LA YGI F ET
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIET 145
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + + +DG+ L I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
+ + Y R G L V+ + + SF +I + I++ SD+V VLVGNK D+ +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
R V + + Q LA YGI + ET
Sbjct: 122 ARTVESRQAQDLARSYGIPYIET 144
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
L K++++G GVGKS L L+ + + + LDG+ +++ I DTAG
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 61
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
QE + I Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
E KR V + + AD++ + + ET
Sbjct: 122 -EDKRQVSVEEAKNRADQWNVNYVET 146
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + + +DG+ L I DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
+ + Y R G L V+ + + SF +I + I++ SD+V VLVGNK D+ +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
R V + + Q LA YGI + ET
Sbjct: 122 ARTVESRQAQDLARSYGIPYIET 144
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + + +DG+ L I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
+ + Y R G L V+ + + SF +I + I++ SD+V VLVGNK D+ +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
R V + + Q LA YGI + ET
Sbjct: 122 GRTVESRQAQDLARSYGIPYIET 144
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + + +DG+ L I DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
+ + Y R G L V+ + + SF +I + I++ SD+V VLVGNK D+ +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFET 158
R V + + Q LA YGI + ET
Sbjct: 122 ARTVESRQAQDLARSYGIPYIET 144
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
L K++++G GVGKS L L+ + + + LDG+ +++ I DTAG
Sbjct: 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 75
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
QE + I Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
E KR V + + A+++ + + ET
Sbjct: 136 -EDKRQVSVEEAKNRAEQWNVNYVET 160
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
L K++++G GVGKS L L+ + + + LDG+ +++ I DTAG
Sbjct: 5 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 63
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
QE + I Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+
Sbjct: 64 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
E KR V + + A+++ + + ET
Sbjct: 124 -EDKRQVSVEEAKNRAEQWNVNYVET 148
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
L K++++G GVGKS L L+ + + + LDG+ +++ I DTAG
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 71
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
QE + I Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
E KR V + + A+++ + + ET
Sbjct: 132 -EDKRQVSVEEAKNRAEQWNVNYVET 156
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+KL + G +GVGKS L++R + + +D + + ++I DTAGQE
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE 87
Query: 76 RFRTIT-TAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADM 132
TI + R G +LVYD+TD SF + ++NI E NV +LVGNKAD+
Sbjct: 88 D--TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADL 144
Query: 133 DESKRAVPTSKGQALADEYGIKFFE 157
D S R V T +G+ LA E F+E
Sbjct: 145 DHS-RQVSTEEGEKLATELACAFYE 168
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + +E+D ++ L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
F + Y + G LVY +T +S+FN++++ I + +D+V +LVGNK D+ E
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETVMQRQI 164
+R V +GQ LA ++ F E+ + +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKI 152
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + +E+D ++ L+I DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 65
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
F + Y + G LVY +T +S+FN++++ I + +D+V +LVGNK D+ E
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 124
Query: 136 KRAVPTSKGQALADEY-GIKFFETVMQRQI 164
+R V +GQ LA ++ F E+ + +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKI 154
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 14 CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
L K++++G GVGKS L L+ + + + LDG+ +++ I DTAG
Sbjct: 5 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 63
Query: 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
E + I Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+
Sbjct: 64 LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 DESKRAVPTSKGQALADEYGIKFFET 158
E KR V + + A+++ + + ET
Sbjct: 124 -EDKRQVSVEEAKNRAEQWNVNYVET 148
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 136 K 136
K
Sbjct: 135 K 135
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 117
+DG +L I DTAGQE F + Y R G LLV+ + D SFN + I +
Sbjct: 52 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 118 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
D+ VLVGNKAD+ ES+R VP S+ A + + +FE
Sbjct: 112 RDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEA 151
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 136 K 136
K
Sbjct: 135 K 135
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 136 K 136
K
Sbjct: 123 K 123
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + +E+D ++ L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
F + Y + G LVY +T +S+FN++++ I + +++V +LVGNK D+ E
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETVMQRQI 164
+R V +GQ LA ++ F E+ + +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKI 152
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++G GVGKS L ++ + + +E+D ++ L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
F + Y + G LVY +T +S+FN++++ I + +++V +LVGNK D+ E
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETVMQRQI 164
+R V +GQ LA ++ F E+ + +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKI 152
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++ +DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I ++ I+
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ S++V VLVGNK+D+ R V T + Q LA YGI F ET
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIET 145
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I ++ I+
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ S++V VLVGNK+D+ R V T + Q LA YGI F ET
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIET 145
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 125 EHTRRELAKMKQEPVKPEEG 144
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 123 EHTRRELAKMKQEPVKPEEG 142
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 123 EHTRRELAKMKQEPVKPEEG 142
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
++ + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ I IE+DGK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 144
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 145 EHTRRELAKMKQEPVRSEEG 164
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ I IE+DGK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 65
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 124
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 125 EHTRRELAKMKQEPVRSEEG 144
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 126 EHTRRELAKMKQEPVKPEEG 145
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 126 EHTRRELAKMKQEPVKPEEG 145
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 127 EHTRRELAKMKQEPVKPEEG 146
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 68
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 128 EHTRRELAKMKQEPVKPEEG 147
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 125 EHTRRELAKMKQEPVKPEEG 144
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 127 EHTRRELAKMKQEPVKPEEG 146
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 69
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 128
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 129 EHTRRELAKMKQEPVKPEEG 148
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ I IE+DGK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQD 144
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 145 EHTRRELAKMKQEPVRSEEG 164
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 125 EHTRRELAKMKQEPVKPEEG 144
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK+D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 125 EHTRRELAKMKQEPVKPEEG 144
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 136 K 136
K
Sbjct: 132 K 132
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 127 EHTRRELAKMKQEPVKPEEG 146
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK+D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 48 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 108 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 150
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + + IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 136 K 136
K
Sbjct: 124 K 124
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + + IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 136 K 136
K
Sbjct: 125 K 125
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+K++L+GD G GK+ LL+ + +++ GK + L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
+ + +Y A +LL +DVT +SF+NI N W + H V ++VG K D+ +
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152
Query: 135 SKRAV 139
K V
Sbjct: 153 DKSLV 157
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 149
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 149
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 49 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 109 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 151
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + +E+DG+R++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLI-VNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQED 70
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y + +L+ + + S N++ WI + H V +LVG K D+
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 133 --------DESKRAVPTSKGQALADEYG 152
E ++ V + +GQ++AD+ G
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIG 157
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
IK + +GD VGK+C+L+ + +DG + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
E + + YRGA LL + + ++S+ NI + W+ + +H + + VLVG K D+
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 134 ESKRAVPTSKGQA 146
+ K+ + G A
Sbjct: 124 DDKQFLKDHPGAA 136
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLI-VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
+ + Y IL+ + V S NI W+ + +H NV +LV NK D+ D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSD 144
Query: 134 ESKR---------AVPTSKGQALA 148
E R V T G+A+A
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMA 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I ++ I+
Sbjct: 60 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ S++V VLVGNK D+ R V T + Q LA YGI F ET
Sbjct: 120 RVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIET 162
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ R V T + LA YGI F ET
Sbjct: 120 RVKDSDDVPMVLVGNKCDL--PTRTVDTKQAHELAKSYGIPFIET 162
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 K 136
K
Sbjct: 130 K 130
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
IK + +GD VGK+C+L+ + +DG + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
E + + YRGA +L + + ++S+ N+ + WI + +H + V +LVG K D+
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 134 ESKR-------AVPTSKGQA 146
+ K+ AVP + Q
Sbjct: 124 DDKQFFIDHPGAVPITTNQG 143
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 136 K 136
K
Sbjct: 126 K 126
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD G GK+ + R + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+F + YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ +
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 136 K 136
K
Sbjct: 132 K 132
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 117
+D + +L I DTAGQE F + Y R G LLV+ VTD SF I + R I +
Sbjct: 48 IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 118 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
D +L+GNKAD+D +R V +GQ LA + + + E
Sbjct: 108 RDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEA 147
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGN+ D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNRCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DT GQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DT GQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG+E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
IK + +GD VGK+CLL+ + ++G + L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
E + + YRGA +L + + ++S+ N+ + WI + +H + V VLVG K D+
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 134 ESKR-------AVP--TSKGQAL 147
+ K+ AVP T +G+ L
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEEL 148
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAGQE + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLI-VFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM 132
+ Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
KL+++GD GK+CLL+ + IE+DGK+++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 68
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
+ + Y IL+ + + S NI W + +H NV +LVGNK D+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 133 DESKRAVPTSKGQALADEYG 152
+ ++R + K + + E G
Sbjct: 128 EHTRRELAKMKQEPVKPEEG 147
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTA QE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFE 157
K + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTA QE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 140
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 175
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 47 KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 149
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 131
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFE 157
K + +G A+A E G +K+ E
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 166
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFE 157
K + +G A+A E G +K+ E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ET
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIET 144
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 128
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 163
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 125
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 160
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK-RIKLQIWDTAGQ 74
+K++++GD GK+ L +R I L G + LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD 131
+ Y GA G+LLVYD+T+ SF N+ +W ++ + + + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 132 MDESKRAVP 140
++ + P
Sbjct: 127 LEHMRTIKP 135
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
IK + +GD VGK+C+L+ + +DG+ + L +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
E + + YRGA +L + + ++S+ N+ + W+ + + A NV VLVG K D+
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126
Query: 134 ESK 136
+ K
Sbjct: 127 DDK 129
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM-- 132
+ + Y L+ + + +SF N+R W + H + +LVG K D+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 121
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFE 157
D+ + +G A+A E G +K+ E
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLE 156
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM-- 132
+ + Y L+ + + +SF N+R W + H + +LVG K D+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFE 157
D+ + +G A+A E G +K+ E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLE 157
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM-- 132
+ + Y L+ + + +SF N+R W + H + +LVG K D+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFE 157
D+ + +G A+A E G +K+ E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLE 157
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 124
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFE 157
K + +G A+A E G +K+ E
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 159
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFE 157
K+ P + +G A+A E G +K+ E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD-GKRIKLQIWDTAGQE 75
K+ LIGD GVGK+ + R T D G IK +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
+ + YY GA G +L +DVT + N+ W++ + + V+ NK D+
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132
Query: 136 KR 137
++
Sbjct: 133 QK 134
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFE 157
K + +G A+A E G +K+ E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
LIK +++GD VGK+CLL+ + +DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMD 133
E + + Y L+ + + +SF+++R W + H N +LVG K D+
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFE 157
+ K+ P + +G A+A E G +K+ E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 308
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
LIK +++GD VGK+CLL+ + +DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMD 133
E + + Y L+ + + +SF+++R W + H N +LVG K D+
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFE 157
+ K+ P + +G A+A E G +K+ E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 308
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
LIK +++GD VGK+CLL+ + +DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMD 133
E + + Y L+ + + +SF+++R W + H N +LVG K D+
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFE 157
+ K+ P + +G A+A E G +K+ E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 308
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
++K +++GD VGK+CLL+ + ++ + GK+ L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM- 132
E + + Y L+ + V + +SF N++ W+ ++++A NV +L+G + D+
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 133 ----------DESKRAVPTSKGQALADEYG 152
D ++ + +GQ LA E G
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIG 165
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI- 113
+ + L L + DTAGQ+ + + ++ G G +LVY VT SF I + + +
Sbjct: 63 KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 114 EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
E H V VLVGNKAD+ +R V +G+ LA+ +G F E+
Sbjct: 123 EGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMES 166
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
IK IWDTAGQER+ +I YYRGA ++V+D+++ ++ + + W+ ++ S N
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYI 149
Query: 123 KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+LV NK +D++K V + Q A + + F +T
Sbjct: 150 IILVANK--IDKNKFQVDILEVQKYAQDNNLLFIQT 183
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIR 111
+ IE+D L+I DTAG E+F ++ Y + G +LVY + ++ SF +I R+ I
Sbjct: 42 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101
Query: 112 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
++++ + V +LVGNK D++ + +S+G+ALA+E+G F ET
Sbjct: 102 RVKRY--EKVPVILVGNKVDLESEREVS-SSEGRALAEEWGCPFMET 145
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+K +L+GD VGK+ L++ + +DG+ ++LQ+ DTAGQ+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQD 79
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDE 134
F + Y LL + V SSF N+ W+ I H +LVG ++D+ E
Sbjct: 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRE 138
Query: 135 -----------SKRAVPTSKGQALADE 150
++ VP + LA+E
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEE 165
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +D K + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +S+ N+R W + H + +LVG K D+ +
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 121
Query: 135 SKRAVPTSKGQALA 148
K + K + LA
Sbjct: 122 DKDTIEKLKEKKLA 135
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 34/174 (19%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +DGK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76 RFRTITTAYYRGAMG-------------------ILLVYDVTDESSFNNIR-NWIRNIEQ 115
+ + Y +G L+ + + +SF N+R W +
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 116 HASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFE 157
H N +LVG K D+ + K + +G A+A E G +K+ E
Sbjct: 125 HCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 177
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +D K + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +S+ N+R W + H + +LVG K D+ +
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 127
Query: 135 SKRAVPTSKGQALA 148
K + K + LA
Sbjct: 128 DKDTIEKLKEKKLA 141
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + +D K + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + + +S+ N+R W + H + +LVG K D+ +
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 128
Query: 135 SKRAVPTSKGQALA 148
K + K + LA
Sbjct: 129 DKDTIEKLKEKKLA 142
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
++ E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I
Sbjct: 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ ++ +LV NK D+ R V +G+ +A +Y I + ET
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIET 160
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
++ E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I
Sbjct: 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ ++ +LV NK D+ R V +G+ +A +Y I + ET
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIET 160
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
++ E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I
Sbjct: 51 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 110
Query: 114 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
+ ++ +LV NK D+ R V +G+ +A +Y I + ET
Sbjct: 111 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIET 155
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+K++++GD VGK+CLLL ++ + L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y + +LL + V + +SF+NI W I +H D VLVG K D+
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDL 139
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-H 116
E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I +
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 117 ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
++ +LV NK D+ R V +G+ +A +Y I + ET
Sbjct: 120 DRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIET 160
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+K++++GD VGK+CLLL ++ + L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y + +LL + V + +SF+NI W I +H D VLVG K D+
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDL 138
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 129
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 121
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
+ + Y L+ + V SSF N++ W+ I H +LVG + D+ +
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 135 SKRAV 139
+
Sbjct: 126 DPSTI 130
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 121
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 122
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 120
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 122
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 126
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 126
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K+LL+G GVGKS L R+I +DG+ L ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
R + ++VY VTD+ SF + +R +R Q +D+V +LVGNK+D+
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLV 119
Query: 134 ESKRAVPTSKGQALADEYGIKFFET 158
S R V +G+A A + KF ET
Sbjct: 120 RS-REVSVDEGRACAVVFDCKFIET 143
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
+ + K+LL+G GVGKS L R+I +DG+ L ++D
Sbjct: 5 ESVYKVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
Q+ R + ++VY VTD+ SF + +R +R Q +D+V +LVGNK
Sbjct: 63 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNK 120
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFET 158
+D+ S R V +G+A A + KF ET
Sbjct: 121 SDLVRS-REVSVDEGRACAVVFDCKFIET 148
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
+ + K+LL+G GVGKS L R+I +DG+ L ++D
Sbjct: 5 ESVYKVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
Q+ R + ++VY VTD+ SF + +R +R Q +D+V +LVGNK
Sbjct: 63 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNK 120
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFET 158
+D+ S R V +G+A A + KF ET
Sbjct: 121 SDLVRS-REVSVDEGRACAVVFDCKFIET 148
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 119
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
IK +++GD VGK+CLL+ + T+ + G+ L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132
+ + Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDL 123
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K+ ++G VGKS L ++ + I ++G+ LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
+ Y G +LVY VT SF I+ I D V KV LVGNK D
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+ +R + +G+ALA+ + F E+
Sbjct: 121 L-HMERVISYEEGKALAESWNAAFLES 146
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K+ ++G VGKS L ++ + I ++G+ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
+ Y G +LVY VT SF I+ I D V KV LVGNK D
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 117
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+ +R + +G+ALA+ + F E+
Sbjct: 118 L-HMERVISYEEGKALAESWNAAFLES 143
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K+ ++G VGKS L ++ + I ++G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
+ Y G +LVY VT SF I+ I D V KV LVGNK D
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+ +R + +G+ALA+ + F E+
Sbjct: 123 L-HMERVISYEEGKALAESWNAAFLES 148
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K+ ++G VGKS L ++ + I ++G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
+ Y G +LVY VT SF I+ I D V KV LVGNK D
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFET 158
+ +R + +G+ALA+ + F E+
Sbjct: 123 L-HMERVISYEEGKALAESWNAAFLES 148
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
++ + G GVGKS L+LR + + I D LQI DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQ 63
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDE 134
F + +LVY +T S ++ I + D ++ +LVGNK D
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 135 SKRAVPTSKGQALADEYGIKFFET 158
S R V +S+ +ALA + F ET
Sbjct: 124 S-REVQSSEAEALARTWKCAFMET 146
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
L +++L+GD GVGK+ L + RT+ +DG+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE-RTLTVDGEDTTLVVVDTWEA 62
Query: 75 ERFRTITT--AYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLVGNK 129
E+ + + +G ++VY + D SF + +R +R H +D+V +LVGNK
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT--HQADHVPIILVGNK 120
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFET 158
AD+ R V +G+A A + KF ET
Sbjct: 121 ADLARC-REVSVEEGRACAVVFDCKFIET 148
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K++++GDS GK+ LL + E+D +RI+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM 132
+ + Y + +L+ +D++ + +++ + W I++ N +LVG K+D+
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDL 123
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K++++GDS GK+ LL + E+D +RI+L +WDT+G
Sbjct: 30 KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM 132
+ + Y + +L+ +D++ + +++ + W I++ N +LVG K+D+
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDL 144
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
K++++GDS GK+ LL + E+D +RI+L +WDT+G
Sbjct: 25 KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 77 FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM 132
+ + Y + +L+ +D++ + +++ + W I++ N +LVG K+D+
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDL 139
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
+ I D LQI DT G +F + +LV+ VT + S + + I
Sbjct: 47 QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 115 Q--HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
Q + +++ +LVGNK D E++R V T + QA+A E+ F ET
Sbjct: 107 QIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVAQEWKCAFMET 150
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G G GK+ +L + + T++ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
R R++ YYR G++ V D D S R + R + + N ++ NK D+ E
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
+ A ++ L
Sbjct: 133 AMSAAEITEKLGL 145
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G G GK+ +L + + T++ K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 55
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
R R++ YYR G++ V D D S R + R + + N ++ NK D+ E
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 135 SKRAVPTSKGQAL 147
+ A ++ L
Sbjct: 116 AMSAAEITEKLGL 128
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR----TIELDGKRIKLQIWDTA 72
K+ ++G++ VGKS L+ ++ TI ++L + DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---NVNKVLVGNK 129
G + ++ + Y+ G +LV+DV+ SF + + W ++ D + VLV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFE 157
D+ + V Q A + FF+
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFD 169
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 17 KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
+++LIG+ GVGKS L + RT+ +DG+ I L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
G+ + + + L+VY +TD +SF + +R +R Q ++++ +LVGNK
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFET 158
+D+ R V S+G+A A + KF ET
Sbjct: 124 SDLVRC-REVSVSEGRACAVVFDCKFIET 151
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G G GK+ +L + + T++ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
R R++ YYR G++ V D D S R + R + + N ++ NK D+ E
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
+ A ++ L
Sbjct: 133 AMSAAEITEKLGL 145
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 17 KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
+++LIG+ GVGKS L + RT+ +DG+ I L +W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
G+ + + + L+VY +TD +SF + +R +R Q ++++ +LVGNK
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 154
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFET 158
+D+ R V S+G+A A + KF ET
Sbjct: 155 SDLVRC-REVSVSEGRACAVVFDCKFIET 182
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 12/149 (8%)
Query: 17 KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
+++LIG+ GVGKS L + RT+ +DG+ I L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
G+ + + + L+VY +TD +SF + +R +R Q ++++ +LVGNK
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFET 158
+D+ R V S+G+A A + KF ET
Sbjct: 124 SDL-VRXREVSVSEGRAXAVVFDCKFIET 151
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 12/149 (8%)
Query: 17 KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
+++LIG+ GVGKS L + RT+ +DG+ I L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
G+ + + + L+VY +TD +SF + +R +R Q ++++ +LVGNK
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFET 158
+D+ R V S+G+A A + KF ET
Sbjct: 124 SDL-VRXREVSVSEGRAXAVVFDXKFIET 151
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW 69
D + K++L+G+SGVGKS L R I +D + + L IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 70 ---DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVL 125
D G R + T L+V+ VTD SF+ + +R ++ +L
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
VGNK+D+ S R V +G+ LA K ET
Sbjct: 136 VGNKSDLARS-REVSLEEGRHLAGTLSCKHIET 167
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
+ ++IWD GQ RFR++ Y RG I+ + D D RN + N +++ +
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 123 KVLVGNKADMDES 135
+++GNK D+ +
Sbjct: 127 VLVLGNKRDLPNA 139
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD GK+ +L+ +E + +R++L +WDT+G
Sbjct: 12 CKLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 70
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMD- 133
+ + Y + +LL +D++ + ++ ++ W I + + +L+G K D+
Sbjct: 71 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRT 129
Query: 134 --------ESKRAVPTS--KGQALADEYGIKFF 156
++ P S +G A+A + G + +
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 162
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD GK+ +L+ +E + +R++L +WDT+G
Sbjct: 11 CKLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 69
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMD- 133
+ + Y + +LL +D++ + ++ ++ W I + + +L+G K D+
Sbjct: 70 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRT 128
Query: 134 --------ESKRAVPTS--KGQALADEYGIKFF 156
++ P S +G A+A + G + +
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 161
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
KL+L+GD GK+ +L+ +E + +R++L +WDT+G
Sbjct: 28 CKLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMD- 133
+ + Y + +LL +D++ + ++ ++ W I + + +L+G K D+
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRT 145
Query: 134 --------ESKRAVPTS--KGQALADEYGIKFF 156
++ P S +G A+A + G + +
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
+ +++WD GQ RFR++ Y RG I+ + D D+ +N + N +++ +
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 123 KVLVGNKADM 132
+++GNK D+
Sbjct: 127 VLVLGNKRDL 136
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKRIK---LQIWDT 71
KL ++G++G GK+ LL + ++ I++ KR + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
AG+E F + + L VYD++ ++ + + W+ NI+ AS + +LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 131 DM-DESKRAVPTSK 143
D+ DE +R SK
Sbjct: 121 DVSDEKQRKACXSK 134
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKRIK---LQIWDT 71
KL ++G++G GK+ LL + ++ I++ KR + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
AG+E F + + L VYD++ ++ + + W+ NI+ AS + +LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP-VILVGTHL 122
Query: 131 DM-DESKRAVPTSK 143
D+ DE +R SK
Sbjct: 123 DVSDEKQRKACXSK 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
+ +++WD GQ RFR++ Y RG I+ + D D+ +N + N +++ +
Sbjct: 76 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 123 KVLVGNKADM 132
+++GNK D+
Sbjct: 136 VLVLGNKRDL 145
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 13 DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW 69
D + K++L+G+SGVGKS L R I +D + + L IW
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 70 ---DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVL 125
D G + + T L+V+ VTD SF+ + +R ++ +L
Sbjct: 70 EQGDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 124
Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
VGNK+D+ S R V +G+ LA K ET
Sbjct: 125 VGNKSDLARS-REVSLEEGRHLAGTLSCKHIET 156
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+ L ++G G GKS L ++ +D + + L++ DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLD 80
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---NVNKVLVGNKADM 132
R Y A L+VY V SF++ +++ + HA + ++ +L+GNK DM
Sbjct: 81 TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFE 157
+ R V ++G ALA +G FFE
Sbjct: 140 AQ-YRQVTKAEGVALAGRFGCLFFE 163
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW-- 69
+ K++L+G+SGVGKS L R I +D + + L IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 70 -DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVG 127
D G + + T L+V+ VTD SF+ + +R ++ +LVG
Sbjct: 62 GDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFET 158
NK+D+ S R V +G+ LA K ET
Sbjct: 117 NKSDLARS-REVSLEEGRHLAGTLSCKHIET 146
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G G GK+ +L + ++ I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC-----NISFTVWDVGGQD 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
R R++ YY G++ V D D S R + R + + N ++ NK D+ E
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
+ A ++ L
Sbjct: 133 AMSAAEITEKLGL 145
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
K +K +WD GQ++ R + YY G G++ V D D + R + I
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 415
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 120
K +K +WD GQ++ R + YY G G++ V D D + R + R I +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 121 VNKVLVGNKADMDESKRA 138
++ NK D+ ++ +
Sbjct: 102 AIILIFANKQDLPDAXKP 119
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 120 NVNKVLVGNKADMDESKRA 138
+ ++ NK D+ ++ +
Sbjct: 114 AI-ILIFANKQDLPDAMKP 131
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 120
K +K +WD GQ++ R + YY G G++ V D D + R + R I +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 121 VNKVLVGNKADMDESKRA 138
++ NK D+ ++ +
Sbjct: 102 AIILIFANKQDLPDAMKP 119
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 120 NVNKVLVGNKADMDESKRA 138
+ ++ NK D+ ++ +
Sbjct: 115 AI-ILIFANKQDLPDAMKP 132
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 120 NVNKVLVGNKADMDESKRA 138
+ ++ NK D+ ++ +
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E + I +WD GQ+
Sbjct: 18 VRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGF---NVETVEF--RNISFTVWDVGGQD 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
+ R + YY G++ V D D ++ R + R I + + ++ NK D+
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN 132
Query: 135 SKRAVPTSK 143
+ A ++
Sbjct: 133 AMSAAEVTE 141
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 71
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ R + Y++ G++ V D D N R +R + + + ++ NK D+
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 135 SKRAV 139
+ A
Sbjct: 132 AMNAA 136
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ R + Y++ G++ V D D N R +R + + + ++ NK D+
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 135 SKRAVPTS 142
+ A +
Sbjct: 133 AMNAAEIT 140
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 55
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ R + Y++ G++ V D D N R +R + + + ++ NK D+
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 135 SKRA 138
+ A
Sbjct: 116 AMNA 119
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 220
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ R + Y++ G++ V D D N R +R + + + ++ NK D+
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 135 SKRAV 139
+ A
Sbjct: 281 AMNAA 285
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNICFTVWDVGGQD 84
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
+ R + Y++ G++ V D D + ++ + Q +LV NK DM
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM-- 142
Query: 135 SKRAVPTSKGQALADEYGIKFFET 158
A+P S+ L D+ G++ +
Sbjct: 143 -PNAMPVSE---LTDKLGLQHLRS 162
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
K +K +WD G ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 44 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 103
Query: 120 NVNKVLVGNKADMDESKRA 138
+ ++ NK D+ ++ +
Sbjct: 104 AI-ILIFANKQDLPDAMKP 121
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 120
K +K +WD G ++ R + YY G G++ V D D + R + R I +
Sbjct: 55 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 121 VNKVLVGNKADMDESKRA 138
++ NK D+ ++ +
Sbjct: 115 AIILIFANKQDLPDAMKP 132
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
K +K +WD G ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 45 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 104
Query: 120 NVNKVLVGNKADMDESKRA 138
+ ++ NK D+ ++ +
Sbjct: 105 AI-ILIFANKQDLPDAMKP 122
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ R + YY+ I+ V D D R ++ + + N ++ NK D+ +
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 135 S 135
+
Sbjct: 133 A 133
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G G GK+ +L R + T+ K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF---NVETVTY--KNLKFQVWDLGGQT 57
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
R YY ++ V D D ++ + +E+ V+ NK DM++
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
Query: 135 SKRAVPTSKGQALA 148
+ P+ AL
Sbjct: 118 A--MTPSEMANALG 129
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G G GK+ +L R + T L K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGF---NVET--LSYKNLKLNVWDLGGQT 73
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
R YY ++ V D TD+ + + + Q +LV NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133
Query: 135 SKRAVPTSK 143
+ A SK
Sbjct: 134 ALSASEVSK 142
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNICFTVWDVGGQD 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
R R + Y++ G++ V D D R Q +D + K+L+ +DE
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSND-----------RERIQEVADELQKMLL-----VDEL 116
Query: 136 KRAV 139
+ AV
Sbjct: 117 RDAV 120
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 75
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADMD 133
+ R + Y++ G++ V D D R+ + + E D V ++ NK D+
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLP 134
Query: 134 ESKRAV 139
+ A
Sbjct: 135 NAMNAA 140
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G GK+ +L + + T+E K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGLD 57
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
+ R + Y++ G++ V D D N R +R + + + ++ NK D+
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
Query: 135 SKRA 138
+ A
Sbjct: 118 AMNA 121
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA 117
E+ K +WD GQE R+ YY I+LV D D + + + H
Sbjct: 54 EIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHE 113
Query: 118 SDNVNKVLV-GNKADMDESKRAVPTSKGQALAD 149
VL+ NK DM A SK L+
Sbjct: 114 DLRKAAVLIFANKQDMKGCMTAAEISKYLTLSS 146
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 54 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 54 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 52 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 95
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 54 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++L++G G GK+ +L R + T+ K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF---NVETVTY--KNLKFQVWDLGGLT 59
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
R YY ++ V D D ++ + +E+ V+ NK DM++
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 119
Query: 135 S 135
+
Sbjct: 120 A 120
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++LL+G GK+ LL I++++ G KL +WD GQ
Sbjct: 18 VRILLLGLDNAGKTTLL---KQLASEDISHITPTQGFNIKSVQSQG--FKLNVWDIGGQR 72
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSF 103
+ R +Y+ ++ V D D F
Sbjct: 73 KIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++LL+G GK+ LL I++++ G KL +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLL---KQLASEDISHITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSF 103
+ R +Y+ ++ V D D F
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 125
Query: 125 LV-GNKADMDESKRAVPTSK 143
L+ NK D+ E S+
Sbjct: 126 LIFANKQDVKECMTVAEISQ 145
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 125 LV-GNKADMDESKRAVPTSK 143
L+ NK D+ E S+
Sbjct: 121 LIFANKQDVKECMTVAEISQ 140
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 125 LV-GNKADMDESKRAVPTSK 143
L+ NK D+ E S+
Sbjct: 121 LIFANKQDVKECMTVAEISQ 140
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 67 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 126
Query: 125 LV-GNKADMDESKRAVPTSK 143
L+ NK D+ E S+
Sbjct: 127 LIFANKQDVKECMTVAEISQ 146
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++LL+G GK+ LL + I++++ G KL +WD GQ
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGF---NIKSVQSQG--FKLNVWDIGGQR 59
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSF 103
+ R +Y+ ++ V D D F
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 16 IKLLLIGDSGVGKSCLLLRX------XXXXXXXXXXXXXXXXXKIRTIELDG--KRIKLQ 67
IK+ LIGD GK+ LL + I+ +E D K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 68 IWDTAGQERFRTITTAYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV 126
WD GQE + R ++ +LL+ TD +N W+R+IE++ + ++V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----SNKHYWLRHIEKYGGKS-PVIVV 156
Query: 127 GNKADMDES 135
NK D + S
Sbjct: 157 MNKIDENPS 165
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
+ ++D +GQ R+R + YY+ I+ V D +D
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD 102
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH------ 116
R+ ++D G ++FR + YY ++ V D +D +++ I+ + +H
Sbjct: 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE 121
Query: 117 --ASDNVNKVLVGNKADMDESKRAV 139
V + NK D +K A
Sbjct: 122 LPGGGRVPFLFFANKMDAAGAKTAA 146
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 17 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
++L++G G GK+ +L R + T+ K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGF---NVETVTY--KNLKFQVWDLGGLTS 63
Query: 77 FRTITTAYYRGAMGILLVYDVTD 99
R YY ++ V D D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCD 86
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIE 114
E+ G + + ++ GQ + RG GI+ V D ++ ++RN N+
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 115 QHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 152
++ D+V V+ NK D+ + A+P +A+ D G
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEG 164
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 6/130 (4%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
+++LL+G GK+ LL I++++ G KL +WD G
Sbjct: 5 VRILLLGLDNAGKTTLL---KQLASEDISHITPTQGFNIKSVQSQG--FKLNVWDIGGLR 59
Query: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
+ R +Y+ ++ V D D F + + + + VL+ NK D+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 119
Query: 135 SKRAVPTSKG 144
+ A ++G
Sbjct: 120 AAPASEIAEG 129
>pdb|4AXG|C Chain C, Structure Of Eif4e-Cup Complex
pdb|4AXG|D Chain D, Structure Of Eif4e-Cup Complex
Length = 130
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 57 IELDGKRIKLQIWDTAGQERFRTITT 82
IEL+G+ ++ IW T+ RFRT +T
Sbjct: 67 IELEGRLRRMNIWRTSDGTRFRTRST 92
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIE 114
E+ G + + ++ GQ + RG GI+ V D ++ + RN N+
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLA 127
Query: 115 QHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 152
++ D+V V+ NK D+ + A+P +A+ D G
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD---ALPVEXVRAVVDPEG 164
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 16 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
I++L++G GK+ +L R + T++ K I ++WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGV---NLETLQY--KNISFEVWDLGGQT 77
Query: 76 RFRTITTAYYRGAMGILLVYDVTD 99
R Y+ ++ V D TD
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTD 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,748,705
Number of Sequences: 62578
Number of extensions: 120730
Number of successful extensions: 1187
Number of sequences better than 100.0: 344
Number of HSP's better than 100.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 346
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)