Query 031201
Match_columns 164
No_of_seqs 115 out of 1568
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.4E-41 2.9E-46 227.5 17.1 156 8-164 2-158 (205)
2 KOG0078 GTP-binding protein SE 100.0 1.1E-38 2.5E-43 216.1 18.6 154 10-164 7-160 (207)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.5E-38 5.5E-43 211.1 16.5 151 13-164 3-153 (200)
4 KOG0098 GTPase Rab2, small G p 100.0 5.6E-38 1.2E-42 208.2 15.6 152 12-164 3-154 (216)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.1E-37 2.3E-42 208.4 16.4 153 11-164 18-171 (221)
6 cd04121 Rab40 Rab40 subfamily. 100.0 1.6E-36 3.4E-41 209.7 20.2 151 12-164 3-153 (189)
7 cd04120 Rab12 Rab12 subfamily. 100.0 3E-36 6.5E-41 210.1 19.5 148 16-164 1-149 (202)
8 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.8E-36 8.2E-41 206.8 19.1 151 12-164 2-165 (182)
9 KOG0394 Ras-related GTPase [Ge 100.0 1.3E-36 2.8E-41 201.3 14.1 153 11-163 5-163 (210)
10 KOG0080 GTPase Rab18, small G 100.0 2.6E-36 5.5E-41 195.9 15.1 154 10-164 6-160 (209)
11 cd04131 Rnd Rnd subfamily. Th 100.0 1.3E-35 2.9E-40 203.6 18.7 148 15-164 1-161 (178)
12 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.7E-35 5.8E-40 208.7 20.4 156 7-164 5-173 (232)
13 cd04122 Rab14 Rab14 subfamily. 100.0 3.8E-35 8.2E-40 199.2 19.8 149 15-164 2-150 (166)
14 KOG0079 GTP-binding protein H- 100.0 1.4E-36 3.1E-41 194.6 11.8 153 10-164 3-155 (198)
15 cd04133 Rop_like Rop subfamily 100.0 7.1E-35 1.5E-39 199.4 18.8 147 16-164 2-159 (176)
16 cd04117 Rab15 Rab15 subfamily. 100.0 1.4E-34 3.1E-39 195.6 19.6 148 16-164 1-148 (161)
17 cd01867 Rab8_Rab10_Rab13_like 100.0 1.6E-34 3.4E-39 196.4 19.5 151 13-164 1-151 (167)
18 PF00071 Ras: Ras family; Int 100.0 1.2E-34 2.6E-39 195.8 18.5 147 17-164 1-147 (162)
19 KOG0093 GTPase Rab3, small G p 100.0 4.9E-35 1.1E-39 187.4 14.6 154 10-164 16-169 (193)
20 cd01865 Rab3 Rab3 subfamily. 100.0 4.8E-34 1E-38 193.7 20.0 148 16-164 2-149 (165)
21 cd01875 RhoG RhoG subfamily. 100.0 3.2E-34 6.9E-39 198.9 19.4 148 15-164 3-163 (191)
22 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6E-34 1.3E-38 193.2 19.6 149 15-164 2-150 (166)
23 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.5E-34 3.2E-39 195.6 16.2 155 8-163 7-161 (222)
24 KOG0086 GTPase Rab4, small G p 100.0 7.1E-35 1.5E-39 188.0 13.0 156 8-164 2-157 (214)
25 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.8E-34 1.3E-38 196.1 18.5 148 16-164 1-152 (182)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.2E-34 1.8E-38 193.8 18.8 148 15-164 2-150 (172)
27 cd01874 Cdc42 Cdc42 subfamily. 100.0 1E-33 2.2E-38 193.8 18.9 148 15-164 1-161 (175)
28 cd01868 Rab11_like Rab11-like. 100.0 1.9E-33 4.1E-38 190.5 19.7 150 14-164 2-151 (165)
29 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.3E-33 2.9E-38 197.2 19.6 148 16-164 1-154 (201)
30 cd04127 Rab27A Rab27a subfamil 100.0 1.6E-33 3.6E-38 193.4 19.1 151 13-164 2-163 (180)
31 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.3E-33 2.7E-38 199.2 18.7 148 15-164 1-161 (222)
32 cd04119 RJL RJL (RabJ-Like) su 100.0 2.3E-33 5E-38 190.2 19.1 148 16-164 1-153 (168)
33 cd01864 Rab19 Rab19 subfamily. 100.0 3.7E-33 8E-38 189.2 19.8 150 14-164 2-152 (165)
34 PLN03071 GTP-binding nuclear p 100.0 3.3E-33 7.2E-38 197.5 19.7 152 9-164 7-158 (219)
35 cd04136 Rap_like Rap-like subf 100.0 2.8E-33 6E-38 189.2 18.2 147 16-164 2-149 (163)
36 cd01866 Rab2 Rab2 subfamily. 100.0 6.3E-33 1.4E-37 188.7 20.0 151 13-164 2-152 (168)
37 cd04109 Rab28 Rab28 subfamily. 100.0 3.7E-33 8E-38 196.9 19.5 148 16-164 1-152 (215)
38 cd01871 Rac1_like Rac1-like su 100.0 5.3E-33 1.1E-37 190.2 19.1 147 16-164 2-161 (174)
39 PLN03110 Rab GTPase; Provision 100.0 9E-33 2E-37 195.0 20.8 153 11-164 8-160 (216)
40 cd04125 RabA_like RabA-like su 100.0 7.1E-33 1.5E-37 191.7 19.9 148 16-164 1-148 (188)
41 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 7E-33 1.5E-37 188.9 19.3 148 17-164 2-151 (170)
42 cd04113 Rab4 Rab4 subfamily. 100.0 7.9E-33 1.7E-37 186.8 19.2 148 16-164 1-148 (161)
43 cd04110 Rab35 Rab35 subfamily. 100.0 1E-32 2.3E-37 192.5 20.3 150 13-164 4-153 (199)
44 cd04116 Rab9 Rab9 subfamily. 100.0 1.4E-32 2.9E-37 187.2 20.3 151 12-164 2-157 (170)
45 cd04106 Rab23_lke Rab23-like s 100.0 8.1E-33 1.8E-37 186.8 18.8 147 16-164 1-149 (162)
46 cd04112 Rab26 Rab26 subfamily. 100.0 9.4E-33 2E-37 191.5 18.9 148 16-164 1-149 (191)
47 PTZ00369 Ras-like protein; Pro 100.0 1.3E-32 2.8E-37 190.6 19.0 149 14-164 4-153 (189)
48 cd04175 Rap1 Rap1 subgroup. T 100.0 1.6E-32 3.4E-37 185.9 18.4 148 15-164 1-149 (164)
49 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.6E-32 5.6E-37 186.0 19.3 148 15-163 2-151 (170)
50 smart00175 RAB Rab subfamily o 100.0 2.9E-32 6.4E-37 184.2 19.4 148 16-164 1-148 (164)
51 cd04111 Rab39 Rab39 subfamily. 100.0 2.3E-32 4.9E-37 192.3 19.5 149 15-164 2-152 (211)
52 PLN03108 Rab family protein; P 100.0 3.4E-32 7.4E-37 191.3 20.1 151 13-164 4-154 (210)
53 cd04176 Rap2 Rap2 subgroup. T 100.0 2.2E-32 4.8E-37 184.9 18.4 148 15-164 1-149 (163)
54 KOG0091 GTPase Rab39, small G 100.0 9.5E-34 2.1E-38 184.5 10.7 152 12-164 5-159 (213)
55 cd04144 Ras2 Ras2 subfamily. 100.0 1.8E-32 3.9E-37 190.0 17.4 146 17-164 1-149 (190)
56 cd04126 Rab20 Rab20 subfamily. 100.0 3.1E-32 6.7E-37 192.0 18.8 144 16-164 1-176 (220)
57 cd00877 Ran Ran (Ras-related n 100.0 5.4E-32 1.2E-36 183.8 19.2 145 16-164 1-145 (166)
58 cd01861 Rab6 Rab6 subfamily. 100.0 7E-32 1.5E-36 182.0 19.4 148 16-164 1-148 (161)
59 cd04124 RabL2 RabL2 subfamily. 100.0 5.8E-32 1.3E-36 182.8 19.0 144 16-164 1-144 (161)
60 cd04140 ARHI_like ARHI subfami 100.0 5.6E-32 1.2E-36 183.5 18.9 147 16-164 2-151 (165)
61 smart00173 RAS Ras subfamily o 100.0 4.3E-32 9.3E-37 183.7 18.1 147 16-164 1-148 (164)
62 cd04134 Rho3 Rho3 subfamily. 100.0 5.1E-32 1.1E-36 187.6 18.1 147 16-164 1-160 (189)
63 cd01860 Rab5_related Rab5-rela 100.0 1.3E-31 2.8E-36 181.1 19.5 149 15-164 1-149 (163)
64 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.5E-31 3.3E-36 180.2 18.8 147 15-164 1-148 (162)
65 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.4E-31 3E-36 182.9 18.8 147 16-164 1-160 (173)
66 cd04142 RRP22 RRP22 subfamily. 100.0 9.6E-32 2.1E-36 187.3 18.1 148 16-164 1-160 (198)
67 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.9E-31 4.1E-36 180.3 19.1 148 15-164 2-150 (164)
68 cd01873 RhoBTB RhoBTB subfamil 100.0 1.4E-31 2.9E-36 186.0 18.4 147 15-164 2-182 (195)
69 KOG0095 GTPase Rab30, small G 100.0 1.6E-32 3.4E-37 176.6 12.5 152 11-163 3-154 (213)
70 cd04132 Rho4_like Rho4-like su 100.0 2E-31 4.3E-36 184.2 18.4 147 16-164 1-153 (187)
71 cd04118 Rab24 Rab24 subfamily. 100.0 3.7E-31 8.1E-36 183.7 19.7 148 16-164 1-152 (193)
72 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.4E-31 7.5E-36 179.2 18.9 147 16-164 1-150 (164)
73 smart00176 RAN Ran (Ras-relate 100.0 2.9E-31 6.3E-36 184.8 18.1 140 21-164 1-140 (200)
74 cd01863 Rab18 Rab18 subfamily. 100.0 6.6E-31 1.4E-35 177.3 19.3 147 16-164 1-148 (161)
75 smart00174 RHO Rho (Ras homolo 100.0 3.2E-31 7E-36 181.0 17.8 145 18-164 1-158 (174)
76 cd04103 Centaurin_gamma Centau 100.0 3.2E-31 6.9E-36 178.7 17.6 142 16-164 1-145 (158)
77 cd04123 Rab21 Rab21 subfamily. 100.0 8.2E-31 1.8E-35 176.6 19.3 148 16-164 1-148 (162)
78 cd04146 RERG_RasL11_like RERG/ 100.0 3.7E-31 8E-36 179.4 16.2 145 17-163 1-148 (165)
79 cd04143 Rhes_like Rhes_like su 100.0 6.4E-31 1.4E-35 188.5 18.2 147 16-164 1-157 (247)
80 cd04114 Rab30 Rab30 subfamily. 100.0 3.5E-30 7.5E-35 175.1 20.5 151 13-164 5-155 (169)
81 PLN03118 Rab family protein; P 100.0 3.2E-30 6.9E-35 181.4 20.8 154 9-164 8-163 (211)
82 cd04135 Tc10 TC10 subfamily. 100.0 1.7E-30 3.7E-35 177.4 18.4 147 16-164 1-160 (174)
83 cd01862 Rab7 Rab7 subfamily. 100.0 2.7E-30 5.9E-35 175.9 19.3 148 16-164 1-153 (172)
84 KOG0081 GTPase Rab27, small G 100.0 6.1E-33 1.3E-37 180.1 5.5 152 12-164 6-167 (219)
85 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-30 2.5E-35 177.8 16.9 149 13-164 2-152 (169)
86 cd00154 Rab Rab family. Rab G 100.0 3.7E-30 8E-35 172.4 19.1 148 16-164 1-148 (159)
87 cd04177 RSR1 RSR1 subgroup. R 100.0 2.7E-30 5.9E-35 175.7 18.7 147 16-164 2-150 (168)
88 KOG0088 GTPase Rab21, small G 100.0 6.3E-32 1.4E-36 175.2 9.3 154 9-163 7-160 (218)
89 KOG0097 GTPase Rab14, small G 100.0 1.1E-30 2.3E-35 166.9 12.7 153 11-164 7-159 (215)
90 cd04148 RGK RGK subfamily. Th 100.0 7.6E-30 1.7E-34 180.6 18.3 146 16-164 1-149 (221)
91 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.2E-29 2.7E-34 176.6 18.4 146 16-162 1-174 (202)
92 cd01870 RhoA_like RhoA-like su 100.0 3.1E-29 6.6E-34 171.4 18.3 148 15-164 1-161 (175)
93 cd00876 Ras Ras family. The R 100.0 3.4E-29 7.3E-34 168.4 17.8 146 17-164 1-147 (160)
94 KOG0395 Ras-related GTPase [Ge 100.0 1.1E-29 2.4E-34 175.9 15.4 148 14-163 2-150 (196)
95 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.2E-32 1.8E-36 170.2 4.1 144 19-163 1-145 (192)
96 cd04139 RalA_RalB RalA/RalB su 100.0 7.7E-29 1.7E-33 167.4 18.5 147 16-164 1-148 (164)
97 cd00157 Rho Rho (Ras homology) 100.0 1.1E-28 2.4E-33 167.8 18.4 147 16-164 1-159 (171)
98 cd04129 Rho2 Rho2 subfamily. 100.0 1.6E-28 3.5E-33 169.8 18.4 148 15-164 1-159 (187)
99 cd04149 Arf6 Arf6 subfamily. 100.0 4.6E-29 1E-33 169.8 14.8 144 13-164 7-156 (168)
100 PLN00023 GTP-binding protein; 100.0 2.2E-28 4.8E-33 178.6 18.9 145 9-153 15-189 (334)
101 cd04147 Ras_dva Ras-dva subfam 100.0 1.9E-28 4.1E-33 170.9 17.9 147 17-164 1-149 (198)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.9E-29 4.1E-34 171.0 11.9 140 17-162 1-144 (164)
103 PTZ00132 GTP-binding nuclear p 100.0 7.5E-28 1.6E-32 169.8 19.8 151 10-164 4-154 (215)
104 cd04137 RheB Rheb (Ras Homolog 100.0 4.5E-28 9.8E-33 166.4 17.9 147 16-164 2-149 (180)
105 KOG0393 Ras-related small GTPa 100.0 2.6E-29 5.6E-34 171.1 10.8 149 13-163 2-164 (198)
106 PLN00223 ADP-ribosylation fact 100.0 5.5E-28 1.2E-32 166.3 16.3 141 13-164 15-164 (181)
107 smart00177 ARF ARF-like small 100.0 1.3E-28 2.9E-33 168.6 12.7 144 13-164 11-160 (175)
108 cd04154 Arl2 Arl2 subfamily. 100.0 5.7E-28 1.2E-32 165.0 15.9 147 10-164 9-161 (173)
109 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.3E-28 1.1E-32 163.2 14.4 141 16-164 1-147 (159)
110 cd01893 Miro1 Miro1 subfamily. 100.0 1.6E-27 3.4E-32 161.8 16.8 146 16-164 1-150 (166)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 5E-28 1.1E-32 166.8 14.2 147 14-164 2-156 (183)
112 cd04158 ARD1 ARD1 subfamily. 100.0 1.5E-27 3.2E-32 162.4 16.0 140 17-164 1-147 (169)
113 PTZ00133 ADP-ribosylation fact 100.0 9.4E-28 2E-32 165.3 13.5 144 13-164 15-164 (182)
114 cd04157 Arl6 Arl6 subfamily. 100.0 1.3E-27 2.7E-32 161.3 13.5 144 17-164 1-150 (162)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.4E-27 5.3E-32 161.1 13.6 142 17-163 1-148 (167)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1E-26 2.2E-31 159.0 15.4 143 14-164 14-162 (174)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.3E-27 7.1E-32 159.1 12.8 141 17-164 1-148 (160)
118 KOG0073 GTP-binding ADP-ribosy 99.9 1.7E-26 3.7E-31 150.6 13.1 149 11-164 12-164 (185)
119 cd04151 Arl1 Arl1 subfamily. 99.9 5.9E-27 1.3E-31 157.7 10.7 140 17-164 1-146 (158)
120 cd00879 Sar1 Sar1 subfamily. 99.9 6.8E-26 1.5E-30 156.9 15.8 144 13-164 17-177 (190)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.1E-26 6.8E-31 154.1 13.6 140 17-164 1-146 (158)
122 PTZ00099 rab6; Provisional 99.9 1.3E-25 2.7E-30 153.7 16.2 126 38-164 3-128 (176)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6.7E-26 1.4E-30 153.7 14.7 141 17-164 1-155 (167)
124 PF00025 Arf: ADP-ribosylation 99.9 1.2E-25 2.5E-30 153.9 14.4 146 11-164 10-162 (175)
125 smart00178 SAR Sar1p-like memb 99.9 3.2E-25 7E-30 152.9 13.6 144 13-164 15-171 (184)
126 cd04159 Arl10_like Arl10-like 99.9 3.4E-25 7.4E-30 148.3 12.7 141 17-164 1-147 (159)
127 TIGR00231 small_GTP small GTP- 99.9 3.2E-24 7E-29 143.2 16.9 148 15-164 1-150 (161)
128 KOG4252 GTP-binding protein [S 99.9 4E-27 8.7E-32 155.9 2.4 151 10-162 15-165 (246)
129 cd01890 LepA LepA subfamily. 99.9 2.9E-24 6.4E-29 147.2 14.7 141 17-164 2-163 (179)
130 cd01891 TypA_BipA TypA (tyrosi 99.9 1E-24 2.2E-29 151.6 12.1 145 16-164 3-168 (194)
131 COG1100 GTPase SAR1 and relate 99.9 1.4E-23 3E-28 148.3 17.4 146 16-161 6-166 (219)
132 PF08477 Miro: Miro-like prote 99.9 2.4E-24 5.2E-29 138.5 12.0 114 17-131 1-119 (119)
133 cd04171 SelB SelB subfamily. 99.9 5.6E-24 1.2E-28 143.6 13.9 142 16-164 1-152 (164)
134 cd01897 NOG NOG1 is a nucleola 99.9 9.3E-24 2E-28 143.3 14.3 143 16-164 1-154 (168)
135 cd01898 Obg Obg subfamily. Th 99.9 8.9E-24 1.9E-28 143.6 14.1 145 17-164 2-157 (170)
136 cd04155 Arl3 Arl3 subfamily. 99.9 1.1E-23 2.4E-28 143.6 14.0 142 12-164 11-161 (173)
137 cd01878 HflX HflX subfamily. 99.9 1E-23 2.3E-28 147.5 13.7 145 12-164 38-191 (204)
138 TIGR02528 EutP ethanolamine ut 99.9 7.3E-24 1.6E-28 140.2 10.8 124 17-164 2-131 (142)
139 PRK12299 obgE GTPase CgtA; Rev 99.9 3.6E-23 7.9E-28 153.9 15.3 149 14-164 157-314 (335)
140 cd00882 Ras_like_GTPase Ras-li 99.9 1.5E-22 3.3E-27 133.8 15.9 144 20-164 1-146 (157)
141 KOG0070 GTP-binding ADP-ribosy 99.9 5E-23 1.1E-27 137.4 11.0 150 10-164 12-164 (181)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.3E-22 4.9E-27 136.3 13.8 141 17-164 2-152 (168)
143 cd01879 FeoB Ferrous iron tran 99.9 2.9E-22 6.3E-27 134.4 13.6 135 20-164 1-143 (158)
144 TIGR03156 GTP_HflX GTP-binding 99.9 4.2E-22 9.1E-27 149.2 15.1 143 13-164 187-338 (351)
145 TIGR03598 GTPase_YsxC ribosome 99.9 2.9E-22 6.4E-27 137.6 13.1 148 10-164 13-176 (179)
146 PRK04213 GTP-binding protein; 99.9 1.7E-22 3.6E-27 141.1 11.1 139 12-163 6-178 (201)
147 PF02421 FeoB_N: Ferrous iron 99.9 2.1E-22 4.5E-27 134.0 10.7 139 16-164 1-147 (156)
148 TIGR02729 Obg_CgtA Obg family 99.9 8.3E-22 1.8E-26 146.5 15.0 148 14-164 156-315 (329)
149 TIGR00450 mnmE_trmE_thdF tRNA 99.9 9.4E-22 2E-26 151.2 15.7 136 13-163 201-346 (442)
150 cd01881 Obg_like The Obg-like 99.9 1.6E-21 3.5E-26 133.0 11.9 143 20-164 1-163 (176)
151 TIGR00436 era GTP-binding prot 99.9 2.9E-21 6.4E-26 140.5 13.8 140 17-164 2-150 (270)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 5.4E-21 1.2E-25 127.9 13.8 133 16-164 2-143 (157)
153 TIGR01393 lepA GTP-binding pro 99.9 2.4E-21 5.3E-26 153.6 13.8 144 14-164 2-166 (595)
154 KOG0075 GTP-binding ADP-ribosy 99.9 2.5E-22 5.5E-27 129.0 6.5 146 14-163 19-167 (186)
155 cd01889 SelB_euk SelB subfamil 99.9 2.7E-21 5.9E-26 134.2 12.1 145 16-164 1-172 (192)
156 KOG1673 Ras GTPases [General f 99.9 1.3E-21 2.8E-26 127.0 9.4 152 11-163 16-171 (205)
157 TIGR00487 IF-2 translation ini 99.9 8.6E-21 1.9E-25 150.0 15.8 141 12-164 84-236 (587)
158 cd04105 SR_beta Signal recogni 99.9 4.8E-21 1E-25 134.0 12.8 117 17-134 2-123 (203)
159 cd00881 GTP_translation_factor 99.9 5.1E-21 1.1E-25 131.9 12.8 142 17-164 1-173 (189)
160 TIGR00475 selB selenocysteine- 99.9 1.1E-20 2.3E-25 149.8 15.1 140 16-164 1-152 (581)
161 PRK03003 GTP-binding protein D 99.9 5.9E-21 1.3E-25 148.6 13.2 146 13-164 209-368 (472)
162 PRK15494 era GTPase Era; Provi 99.9 1.1E-20 2.4E-25 141.3 14.1 140 12-164 49-202 (339)
163 PRK12297 obgE GTPase CgtA; Rev 99.9 3.4E-20 7.3E-25 141.4 16.7 144 15-164 158-313 (424)
164 PRK05291 trmE tRNA modificatio 99.9 8.2E-21 1.8E-25 146.6 13.3 134 14-164 214-356 (449)
165 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 3.9E-21 8.5E-26 128.5 9.6 147 13-163 8-154 (216)
166 PRK11058 GTPase HflX; Provisio 99.9 2E-20 4.2E-25 143.3 13.7 144 14-164 196-348 (426)
167 PRK05306 infB translation init 99.9 2.4E-20 5.2E-25 150.9 14.7 144 12-164 287-438 (787)
168 CHL00189 infB translation init 99.8 1.7E-20 3.8E-25 150.5 13.4 146 12-164 241-396 (742)
169 KOG3883 Ras family small GTPas 99.8 1.1E-19 2.4E-24 117.7 14.4 148 13-162 7-159 (198)
170 PRK03003 GTP-binding protein D 99.8 5.3E-20 1.2E-24 143.2 15.1 139 14-164 37-185 (472)
171 PRK15467 ethanolamine utilizat 99.8 1.8E-20 3.9E-25 126.3 10.8 125 17-164 3-133 (158)
172 cd01895 EngA2 EngA2 subfamily. 99.8 1.1E-19 2.4E-24 123.3 14.2 143 15-164 2-161 (174)
173 PRK00454 engB GTP-binding prot 99.8 5.3E-20 1.1E-24 127.9 12.9 148 10-164 19-180 (196)
174 KOG0071 GTP-binding ADP-ribosy 99.8 3.5E-20 7.6E-25 118.4 10.8 144 13-164 15-164 (180)
175 PRK12296 obgE GTPase CgtA; Rev 99.8 8.1E-20 1.7E-24 141.1 14.6 148 13-164 157-326 (500)
176 cd01888 eIF2_gamma eIF2-gamma 99.8 5E-20 1.1E-24 128.9 11.5 143 16-164 1-185 (203)
177 KOG0076 GTP-binding ADP-ribosy 99.8 8.4E-21 1.8E-25 125.2 6.7 149 12-164 14-173 (197)
178 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-19 2.3E-24 121.7 12.2 134 19-164 1-144 (157)
179 KOG0074 GTP-binding ADP-ribosy 99.8 7.2E-20 1.6E-24 117.1 10.5 150 11-164 13-165 (185)
180 TIGR00483 EF-1_alpha translati 99.8 1E-19 2.2E-24 140.2 13.5 149 12-164 4-193 (426)
181 PRK12317 elongation factor 1-a 99.8 1.1E-19 2.3E-24 140.0 12.8 149 12-164 3-191 (425)
182 TIGR03594 GTPase_EngA ribosome 99.8 6.3E-19 1.4E-23 136.0 16.9 145 12-164 169-330 (429)
183 PRK10218 GTP-binding protein; 99.8 3.9E-19 8.4E-24 140.9 15.7 147 14-164 4-171 (607)
184 cd04163 Era Era subfamily. Er 99.8 5.3E-19 1.1E-23 119.0 14.3 144 15-164 3-155 (168)
185 TIGR00437 feoB ferrous iron tr 99.8 1.9E-19 4.1E-24 142.9 13.9 133 22-164 1-141 (591)
186 PRK00089 era GTPase Era; Revie 99.8 3.4E-19 7.3E-24 131.2 13.8 145 14-164 4-157 (292)
187 PRK05433 GTP-binding protein L 99.8 2E-19 4.4E-24 142.9 13.1 145 13-164 5-170 (600)
188 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.2E-19 9.1E-24 124.7 13.2 143 17-164 1-180 (208)
189 PRK12298 obgE GTPase CgtA; Rev 99.8 6.5E-19 1.4E-23 133.6 15.0 147 15-164 159-319 (390)
190 PRK09554 feoB ferrous iron tra 99.8 1E-18 2.3E-23 141.8 16.8 140 15-164 3-154 (772)
191 PRK00093 GTP-binding protein D 99.8 8.1E-19 1.8E-23 135.6 14.9 135 16-164 2-148 (435)
192 TIGR01394 TypA_BipA GTP-bindin 99.8 3.4E-19 7.3E-24 141.3 12.2 144 16-163 2-166 (594)
193 KOG4423 GTP-binding protein-li 99.8 3.2E-22 6.9E-27 133.3 -4.6 152 12-163 22-179 (229)
194 PF00009 GTP_EFTU: Elongation 99.8 2.4E-19 5.1E-24 124.1 9.2 148 13-164 1-173 (188)
195 cd00880 Era_like Era (E. coli 99.8 8.2E-19 1.8E-23 117.0 10.9 140 20-164 1-150 (163)
196 COG2229 Predicted GTPase [Gene 99.8 2.9E-18 6.2E-23 114.6 13.2 144 11-163 6-163 (187)
197 cd01883 EF1_alpha Eukaryotic e 99.8 8E-19 1.7E-23 124.2 11.2 144 17-164 1-191 (219)
198 TIGR00491 aIF-2 translation in 99.8 3.1E-18 6.7E-23 135.4 14.0 112 15-133 4-134 (590)
199 PRK00093 GTP-binding protein D 99.8 3.8E-18 8.2E-23 131.9 13.9 146 13-164 171-330 (435)
200 TIGR03594 GTPase_EngA ribosome 99.8 6.3E-18 1.4E-22 130.5 15.1 134 17-164 1-146 (429)
201 COG1159 Era GTPase [General fu 99.8 2.8E-18 6E-23 123.0 11.4 145 14-164 5-158 (298)
202 PRK09518 bifunctional cytidyla 99.8 3.1E-18 6.7E-23 139.0 12.8 142 14-164 449-607 (712)
203 cd01884 EF_Tu EF-Tu subfamily. 99.8 9.4E-18 2E-22 116.5 13.1 144 15-164 2-169 (195)
204 PRK10512 selenocysteinyl-tRNA- 99.8 9.1E-18 2E-22 133.8 14.6 140 17-164 2-152 (614)
205 cd01876 YihA_EngB The YihA (En 99.8 8.5E-18 1.8E-22 113.4 12.5 139 17-164 1-157 (170)
206 cd01896 DRG The developmentall 99.8 3.4E-17 7.4E-22 116.7 16.0 83 17-101 2-91 (233)
207 cd04168 TetM_like Tet(M)-like 99.8 3.3E-18 7.1E-23 122.2 10.6 117 17-137 1-133 (237)
208 cd01850 CDC_Septin CDC/Septin. 99.8 6.9E-18 1.5E-22 123.0 12.1 142 13-159 2-183 (276)
209 PRK09518 bifunctional cytidyla 99.8 4.6E-17 1E-21 132.2 17.2 141 11-164 271-422 (712)
210 PRK04004 translation initiatio 99.8 1.3E-17 2.8E-22 132.2 13.6 114 13-133 4-136 (586)
211 cd01885 EF2 EF2 (for archaea a 99.8 1.4E-17 3.1E-22 117.5 12.1 120 17-140 2-145 (222)
212 TIGR03680 eif2g_arch translati 99.8 1E-17 2.2E-22 128.3 11.3 150 13-164 2-182 (406)
213 PRK04000 translation initiatio 99.8 1.6E-17 3.6E-22 127.1 12.1 150 9-164 3-187 (411)
214 cd04167 Snu114p Snu114p subfam 99.8 3.9E-17 8.4E-22 115.1 13.0 113 17-133 2-136 (213)
215 cd04169 RF3 RF3 subfamily. Pe 99.8 2.9E-17 6.2E-22 119.2 12.6 117 15-135 2-138 (267)
216 TIGR00485 EF-Tu translation el 99.7 2.6E-17 5.7E-22 125.6 12.9 147 11-163 8-178 (394)
217 PRK12735 elongation factor Tu; 99.7 3.7E-17 8.1E-22 124.8 13.7 148 10-163 7-178 (396)
218 PRK12736 elongation factor Tu; 99.7 5.4E-17 1.2E-21 123.8 13.7 147 11-163 8-178 (394)
219 cd01886 EF-G Elongation factor 99.7 5E-17 1.1E-21 118.0 12.7 140 17-162 1-159 (270)
220 PF10662 PduV-EutP: Ethanolami 99.7 3.4E-17 7.5E-22 106.9 9.9 125 17-164 3-132 (143)
221 KOG0072 GTP-binding ADP-ribosy 99.7 3.3E-18 7.1E-23 109.8 4.8 149 11-164 14-165 (182)
222 PLN00043 elongation factor 1-a 99.7 8.8E-17 1.9E-21 124.1 13.0 147 12-164 4-199 (447)
223 COG0370 FeoB Fe2+ transport sy 99.7 1.6E-16 3.5E-21 124.6 14.1 140 15-164 3-150 (653)
224 CHL00071 tufA elongation facto 99.7 1.5E-16 3.2E-21 122.0 13.5 149 10-164 7-179 (409)
225 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.2E-16 2.7E-21 112.9 11.8 140 17-160 1-159 (232)
226 KOG1707 Predicted Ras related/ 99.7 3.3E-17 7.2E-22 125.9 9.4 149 11-162 5-159 (625)
227 KOG1489 Predicted GTP-binding 99.7 1.3E-16 2.8E-21 115.0 11.6 145 14-164 195-353 (366)
228 PLN03126 Elongation factor Tu; 99.7 2.2E-16 4.8E-21 122.5 13.3 147 11-163 77-247 (478)
229 COG0486 ThdF Predicted GTPase 99.7 3.8E-16 8.2E-21 118.0 13.1 139 13-164 215-362 (454)
230 KOG1423 Ras-like GTPase ERA [C 99.7 6.2E-16 1.3E-20 111.1 13.2 121 9-133 66-198 (379)
231 PF09439 SRPRB: Signal recogni 99.7 7.1E-17 1.5E-21 109.8 7.0 117 15-135 3-127 (181)
232 cd04170 EF-G_bact Elongation f 99.7 1.2E-15 2.6E-20 111.1 13.4 132 17-157 1-150 (268)
233 COG2262 HflX GTPases [General 99.7 1.2E-15 2.5E-20 113.7 13.0 148 9-164 186-342 (411)
234 PRK05124 cysN sulfate adenylyl 99.7 7.2E-16 1.6E-20 119.9 12.5 148 12-164 24-211 (474)
235 TIGR02034 CysN sulfate adenyly 99.7 7.5E-16 1.6E-20 118.0 12.1 144 16-164 1-183 (406)
236 TIGR00484 EF-G translation elo 99.7 1.9E-15 4.1E-20 122.6 13.9 144 11-163 6-171 (689)
237 PRK00049 elongation factor Tu; 99.7 2.9E-15 6.2E-20 114.5 14.1 148 10-163 7-178 (396)
238 PF01926 MMR_HSR1: 50S ribosom 99.7 4.2E-15 9E-20 95.1 12.4 105 17-129 1-116 (116)
239 PTZ00141 elongation factor 1- 99.7 3.5E-15 7.6E-20 115.3 14.1 148 12-164 4-199 (446)
240 KOG0077 Vesicle coat complex C 99.7 1.3E-15 2.8E-20 100.1 9.7 118 14-136 19-137 (193)
241 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.2E-15 1.1E-19 104.9 13.4 113 17-133 1-151 (224)
242 COG0532 InfB Translation initi 99.7 4.3E-15 9.3E-20 113.8 13.5 140 14-164 4-156 (509)
243 TIGR00503 prfC peptide chain r 99.7 2.2E-15 4.7E-20 118.4 12.3 120 11-134 7-146 (527)
244 PRK00741 prfC peptide chain re 99.6 3E-15 6.5E-20 117.6 12.4 119 12-134 7-145 (526)
245 PRK05506 bifunctional sulfate 99.6 2.1E-15 4.5E-20 121.4 11.7 149 11-164 20-207 (632)
246 PRK13351 elongation factor G; 99.6 1.2E-15 2.7E-20 123.8 10.5 119 12-136 5-141 (687)
247 COG0218 Predicted GTPase [Gene 99.6 7.5E-15 1.6E-19 100.2 12.6 115 10-133 19-148 (200)
248 KOG0462 Elongation factor-type 99.6 4.8E-15 1E-19 113.6 12.1 150 11-164 56-221 (650)
249 cd04104 p47_IIGP_like p47 (47- 99.6 9.2E-15 2E-19 101.8 12.6 111 15-133 1-120 (197)
250 PLN03127 Elongation factor Tu; 99.6 1.1E-14 2.5E-19 112.4 14.0 146 11-162 57-226 (447)
251 COG1160 Predicted GTPases [Gen 99.6 1E-14 2.2E-19 110.1 12.3 135 16-164 4-151 (444)
252 PRK12739 elongation factor G; 99.6 1.7E-14 3.6E-19 117.1 13.2 118 12-135 5-140 (691)
253 COG1084 Predicted GTPase [Gene 99.6 3.8E-14 8.3E-19 102.9 13.1 121 10-134 163-294 (346)
254 KOG1145 Mitochondrial translat 99.6 1.7E-14 3.6E-19 110.7 11.2 145 11-164 149-302 (683)
255 COG1160 Predicted GTPases [Gen 99.6 1.3E-13 2.9E-18 104.1 15.7 144 14-164 177-337 (444)
256 COG0481 LepA Membrane GTPase L 99.6 2.9E-14 6.3E-19 107.9 11.6 151 10-164 4-172 (603)
257 smart00010 small_GTPase Small 99.6 2.9E-15 6.2E-20 96.5 5.2 110 16-163 1-111 (124)
258 TIGR00490 aEF-2 translation el 99.6 2.8E-14 6E-19 116.2 11.6 128 11-142 15-160 (720)
259 cd01899 Ygr210 Ygr210 subfamil 99.6 1E-13 2.2E-18 102.7 13.4 81 18-98 1-110 (318)
260 PTZ00327 eukaryotic translatio 99.6 2.3E-14 4.9E-19 110.8 10.3 152 11-164 30-219 (460)
261 PRK00007 elongation factor G; 99.6 3.3E-14 7.2E-19 115.4 11.7 144 11-163 6-171 (693)
262 KOG1707 Predicted Ras related/ 99.5 2.6E-13 5.7E-18 104.8 13.4 148 9-161 419-567 (625)
263 COG0536 Obg Predicted GTPase [ 99.5 1.3E-13 2.9E-18 100.6 11.1 146 15-164 159-319 (369)
264 COG5256 TEF1 Translation elong 99.5 2.7E-13 5.8E-18 101.2 12.5 151 12-164 4-197 (428)
265 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 9.4E-13 2E-17 91.6 12.9 140 16-160 1-161 (196)
266 PRK09602 translation-associate 99.5 1.9E-12 4.1E-17 98.7 14.1 83 16-98 2-113 (396)
267 cd01853 Toc34_like Toc34-like 99.5 1.8E-12 3.9E-17 93.1 13.2 122 9-133 25-162 (249)
268 COG1163 DRG Predicted GTPase [ 99.5 3.6E-12 7.8E-17 92.6 14.1 90 11-102 59-155 (365)
269 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.4E-12 9.4E-17 92.9 14.0 122 9-133 32-166 (313)
270 PTZ00258 GTP-binding protein; 99.4 3.5E-12 7.6E-17 96.5 13.4 90 9-98 15-126 (390)
271 PLN00116 translation elongatio 99.4 1.6E-12 3.5E-17 107.5 12.3 120 10-133 14-163 (843)
272 PRK09866 hypothetical protein; 99.4 6.5E-12 1.4E-16 99.1 14.5 97 65-164 231-339 (741)
273 PRK14845 translation initiatio 99.4 2.7E-12 5.8E-17 106.9 13.0 100 27-133 473-591 (1049)
274 PRK12740 elongation factor G; 99.4 1.2E-12 2.7E-17 106.2 10.8 124 21-153 1-142 (668)
275 KOG1191 Mitochondrial GTPase [ 99.4 6.5E-13 1.4E-17 100.9 8.5 120 13-134 266-403 (531)
276 cd00066 G-alpha G protein alph 99.4 2.2E-12 4.8E-17 95.9 11.2 71 63-133 160-241 (317)
277 PF05783 DLIC: Dynein light in 99.4 4E-12 8.7E-17 98.4 12.5 148 13-163 23-249 (472)
278 PTZ00416 elongation factor 2; 99.4 2.9E-12 6.4E-17 105.9 12.3 118 12-133 16-157 (836)
279 COG3596 Predicted GTPase [Gene 99.4 4E-13 8.6E-18 95.6 6.2 118 12-133 36-161 (296)
280 COG1217 TypA Predicted membran 99.4 1.9E-12 4.2E-17 98.0 10.2 144 14-164 4-171 (603)
281 PRK07560 elongation factor EF- 99.4 1.6E-12 3.5E-17 106.2 10.4 122 11-136 16-155 (731)
282 smart00275 G_alpha G protein a 99.4 2.7E-12 5.8E-17 96.3 10.6 70 64-133 184-264 (342)
283 KOG0090 Signal recognition par 99.4 1.8E-12 3.8E-17 89.0 8.8 114 16-134 39-159 (238)
284 PRK09601 GTP-binding protein Y 99.4 1.2E-11 2.7E-16 92.6 14.0 83 16-98 3-107 (364)
285 KOG3905 Dynein light intermedi 99.4 3.9E-12 8.5E-17 92.5 10.5 151 9-162 46-274 (473)
286 cd01882 BMS1 Bms1. Bms1 is an 99.4 7.2E-12 1.6E-16 89.0 11.7 140 12-163 36-181 (225)
287 PF00735 Septin: Septin; Inte 99.4 3.7E-12 8.1E-17 93.0 10.5 115 14-133 3-155 (281)
288 KOG0458 Elongation factor 1 al 99.4 8.3E-12 1.8E-16 96.6 12.0 152 10-164 172-368 (603)
289 TIGR00157 ribosome small subun 99.4 3.4E-12 7.3E-17 91.7 7.9 85 75-164 24-109 (245)
290 COG2895 CysN GTPases - Sulfate 99.3 5.4E-11 1.2E-15 87.5 12.5 150 12-164 3-189 (431)
291 KOG3886 GTP-binding protein [S 99.3 6.3E-12 1.4E-16 87.4 6.2 144 15-160 4-161 (295)
292 PF04548 AIG1: AIG1 family; I 99.3 9E-12 2E-16 87.8 7.1 140 16-159 1-161 (212)
293 KOG1490 GTP-binding protein CR 99.3 1.8E-11 4E-16 93.4 8.4 153 8-163 161-326 (620)
294 COG4917 EutP Ethanolamine util 99.3 1.8E-11 3.9E-16 77.2 6.7 124 17-163 3-131 (148)
295 TIGR02836 spore_IV_A stage IV 99.3 2.3E-10 5E-15 86.4 13.8 142 13-161 15-218 (492)
296 PF05049 IIGP: Interferon-indu 99.3 1.7E-11 3.7E-16 92.0 7.7 112 13-132 33-153 (376)
297 KOG0461 Selenocysteine-specifi 99.3 1.3E-10 2.9E-15 85.4 12.1 147 13-163 5-174 (522)
298 cd01900 YchF YchF subfamily. 99.3 7.5E-11 1.6E-15 85.7 10.5 81 18-98 1-103 (274)
299 COG0480 FusA Translation elong 99.2 1E-10 2.2E-15 94.3 11.3 131 12-147 7-155 (697)
300 PF00350 Dynamin_N: Dynamin fa 99.2 1.4E-10 3.1E-15 78.5 10.4 63 65-130 102-168 (168)
301 KOG1954 Endocytosis/signaling 99.2 9.2E-11 2E-15 86.9 9.3 125 10-137 53-228 (532)
302 PRK13768 GTPase; Provisional 99.2 8.8E-11 1.9E-15 84.8 7.7 67 65-133 98-175 (253)
303 TIGR00101 ureG urease accessor 99.2 4.3E-10 9.3E-15 78.4 10.9 86 65-164 93-182 (199)
304 COG5019 CDC3 Septin family pro 99.2 3.1E-10 6.7E-15 84.0 10.0 141 11-156 19-199 (373)
305 smart00053 DYNc Dynamin, GTPas 99.2 7.2E-10 1.6E-14 79.1 11.1 119 13-134 24-206 (240)
306 TIGR00993 3a0901s04IAP86 chlor 99.2 1.2E-09 2.6E-14 86.8 12.9 122 10-133 113-249 (763)
307 KOG2655 Septin family protein 99.1 8.6E-10 1.9E-14 82.1 11.2 141 11-156 17-195 (366)
308 COG4108 PrfC Peptide chain rel 99.1 8.4E-10 1.8E-14 83.3 10.4 132 13-153 10-163 (528)
309 KOG0082 G-protein alpha subuni 99.1 4.4E-10 9.6E-15 83.5 8.9 78 54-133 187-275 (354)
310 TIGR00073 hypB hydrogenase acc 99.1 1.1E-09 2.4E-14 76.8 9.7 28 11-38 18-45 (207)
311 KOG0468 U5 snRNP-specific prot 99.1 1E-09 2.2E-14 86.6 10.1 118 11-132 124-261 (971)
312 KOG1532 GTPase XAB1, interacts 99.1 1E-09 2.3E-14 78.4 8.7 125 9-135 13-196 (366)
313 PF03029 ATP_bind_1: Conserved 99.1 2.1E-11 4.5E-16 87.2 -0.3 70 65-134 92-170 (238)
314 COG5257 GCD11 Translation init 99.0 6.1E-10 1.3E-14 81.2 6.6 145 13-163 8-187 (415)
315 PRK09435 membrane ATPase/prote 99.0 3.2E-09 6.9E-14 79.2 10.0 90 64-164 149-246 (332)
316 KOG1144 Translation initiation 99.0 1.9E-09 4E-14 86.0 9.0 114 12-132 472-604 (1064)
317 COG0012 Predicted GTPase, prob 99.0 1.3E-08 2.8E-13 75.9 12.5 84 15-98 2-108 (372)
318 KOG0705 GTPase-activating prot 99.0 9.6E-10 2.1E-14 85.0 5.7 145 12-163 27-174 (749)
319 COG0050 TufB GTPases - transla 99.0 4.6E-09 1E-13 75.8 8.6 143 10-161 7-176 (394)
320 KOG1547 Septin CDC10 and relat 98.9 7.9E-09 1.7E-13 72.7 7.9 117 11-132 42-196 (336)
321 PF00503 G-alpha: G-protein al 98.9 9.3E-09 2E-13 78.8 8.9 69 64-132 236-315 (389)
322 TIGR00750 lao LAO/AO transport 98.9 8.4E-09 1.8E-13 76.4 7.9 91 63-164 126-224 (300)
323 KOG3887 Predicted small GTPase 98.9 9.8E-09 2.1E-13 72.3 7.6 115 14-132 26-147 (347)
324 COG3276 SelB Selenocysteine-sp 98.9 1.5E-08 3.2E-13 76.8 8.7 140 17-164 2-148 (447)
325 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5.9E-09 1.3E-13 68.8 5.9 54 17-74 85-138 (141)
326 KOG0410 Predicted GTP binding 98.8 2.7E-09 5.9E-14 77.9 4.0 122 10-133 173-307 (410)
327 KOG1486 GTP-binding protein DR 98.8 2.2E-07 4.7E-12 66.0 13.0 88 13-102 60-154 (364)
328 COG0378 HypB Ni2+-binding GTPa 98.8 1.9E-09 4.1E-14 73.5 1.8 41 123-164 145-187 (202)
329 cd04178 Nucleostemin_like Nucl 98.8 2.2E-08 4.8E-13 68.2 6.7 56 13-73 115-171 (172)
330 KOG2486 Predicted GTPase [Gene 98.8 2.3E-08 4.9E-13 71.7 6.8 143 12-163 133-301 (320)
331 KOG0467 Translation elongation 98.8 4.5E-08 9.8E-13 78.4 8.4 115 9-131 3-135 (887)
332 cd01854 YjeQ_engC YjeQ/EngC. 98.7 4.4E-08 9.6E-13 72.1 7.4 77 82-164 73-150 (287)
333 cd01858 NGP_1 NGP-1. Autoanti 98.7 4.4E-08 9.5E-13 65.8 6.8 56 14-73 101-156 (157)
334 cd01856 YlqF YlqF. Proteins o 98.7 7.1E-08 1.5E-12 65.7 7.3 59 12-74 112-170 (171)
335 cd01859 MJ1464 MJ1464. This f 98.7 7.4E-08 1.6E-12 64.6 6.9 57 13-73 99-155 (156)
336 KOG0460 Mitochondrial translat 98.7 2.2E-07 4.8E-12 68.5 9.6 146 10-161 49-218 (449)
337 PRK12288 GTPase RsgA; Reviewed 98.7 1.1E-07 2.5E-12 71.5 7.7 77 85-164 118-194 (347)
338 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.2E-07 2.6E-12 69.8 7.7 57 13-74 119-176 (287)
339 TIGR03596 GTPase_YlqF ribosome 98.7 9.7E-08 2.1E-12 69.9 7.1 58 13-74 116-173 (276)
340 cd01855 YqeH YqeH. YqeH is an 98.7 1.2E-07 2.5E-12 65.7 7.1 80 77-164 24-111 (190)
341 PRK12289 GTPase RsgA; Reviewed 98.6 1.4E-07 3E-12 71.2 7.8 80 79-164 81-161 (352)
342 COG5192 BMS1 GTP-binding prote 98.6 4.7E-07 1E-11 71.0 10.7 141 9-161 63-209 (1077)
343 KOG1143 Predicted translation 98.6 2.1E-07 4.5E-12 69.6 8.3 118 12-133 164-316 (591)
344 PRK00098 GTPase RsgA; Reviewed 98.6 1.1E-07 2.5E-12 70.3 7.0 76 84-164 77-153 (298)
345 PF09547 Spore_IV_A: Stage IV 98.6 1.2E-06 2.7E-11 66.6 12.2 142 14-161 16-218 (492)
346 TIGR00092 GTP-binding protein 98.6 4.6E-07 1E-11 68.4 9.5 83 16-98 3-108 (368)
347 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.8E-07 3.8E-12 61.8 6.3 76 82-164 6-83 (141)
348 TIGR03348 VI_IcmF type VI secr 98.6 3.2E-07 6.8E-12 79.0 9.4 114 15-133 111-256 (1169)
349 cd01855 YqeH YqeH. YqeH is an 98.6 1.2E-07 2.5E-12 65.7 5.7 54 15-73 127-189 (190)
350 PRK10463 hydrogenase nickel in 98.6 2.1E-07 4.6E-12 68.0 7.0 26 13-38 102-127 (290)
351 cd01859 MJ1464 MJ1464. This f 98.6 1.5E-07 3.3E-12 63.1 5.6 80 78-164 3-82 (156)
352 COG5258 GTPBP1 GTPase [General 98.6 3.7E-07 8.1E-12 68.4 7.8 152 9-164 111-325 (527)
353 KOG0448 Mitofusin 1 GTPase, in 98.5 3.2E-06 7E-11 67.4 12.8 144 13-161 107-309 (749)
354 cd01851 GBP Guanylate-binding 98.5 3.1E-06 6.8E-11 60.2 11.7 120 12-132 4-146 (224)
355 COG1161 Predicted GTPases [Gen 98.5 2.6E-07 5.7E-12 69.0 6.3 57 13-74 130-187 (322)
356 cd01849 YlqF_related_GTPase Yl 98.5 4.2E-07 9.1E-12 60.9 6.3 56 13-73 98-154 (155)
357 KOG0447 Dynamin-like GTP bindi 98.5 5.5E-06 1.2E-10 64.9 12.4 140 8-150 301-508 (980)
358 TIGR03597 GTPase_YqeH ribosome 98.5 5.5E-07 1.2E-11 68.4 6.7 83 74-164 50-139 (360)
359 KOG1491 Predicted GTP-binding 98.5 7.8E-07 1.7E-11 65.6 7.0 86 13-98 18-125 (391)
360 PF03193 DUF258: Protein of un 98.4 4.4E-07 9.6E-12 60.9 3.5 24 16-39 36-59 (161)
361 KOG0099 G protein subunit Galp 98.3 2.5E-06 5.3E-11 61.1 6.8 72 62-133 200-282 (379)
362 PF03308 ArgK: ArgK protein; 98.3 1.6E-07 3.5E-12 67.1 0.8 141 13-164 27-216 (266)
363 COG1703 ArgK Putative periplas 98.3 5.2E-06 1.1E-10 60.5 8.5 143 11-164 47-240 (323)
364 cd03112 CobW_like The function 98.3 5.7E-06 1.2E-10 55.7 8.2 21 18-38 3-23 (158)
365 KOG4273 Uncharacterized conser 98.3 7.6E-06 1.6E-10 58.3 8.9 143 15-161 4-193 (418)
366 PRK10416 signal recognition pa 98.3 9E-06 1.9E-10 60.7 9.8 134 14-159 113-293 (318)
367 PRK12288 GTPase RsgA; Reviewed 98.3 1.9E-06 4.1E-11 65.0 5.8 22 18-39 208-229 (347)
368 COG1618 Predicted nucleotide k 98.3 3.8E-05 8.1E-10 51.3 11.0 113 13-131 3-141 (179)
369 TIGR03597 GTPase_YqeH ribosome 98.2 2.8E-06 6.1E-11 64.5 6.2 55 16-75 155-215 (360)
370 TIGR00064 ftsY signal recognit 98.2 1.6E-05 3.5E-10 58.1 9.7 85 63-159 154-251 (272)
371 PRK13796 GTPase YqeH; Provisio 98.2 2.9E-06 6.2E-11 64.6 5.3 56 16-74 161-220 (365)
372 KOG0464 Elongation factor G [T 98.2 5.2E-07 1.1E-11 68.4 1.2 119 11-133 33-167 (753)
373 TIGR00157 ribosome small subun 98.1 4.6E-06 9.9E-11 60.1 5.3 23 17-39 122-144 (245)
374 PRK12289 GTPase RsgA; Reviewed 98.1 4.4E-06 9.5E-11 63.1 5.3 22 18-39 175-196 (352)
375 TIGR01425 SRP54_euk signal rec 98.1 6.9E-05 1.5E-09 58.0 11.7 85 63-159 182-273 (429)
376 cd01858 NGP_1 NGP-1. Autoanti 98.1 7.6E-06 1.6E-10 54.9 5.8 74 84-163 5-80 (157)
377 KOG1424 Predicted GTP-binding 98.1 5.4E-06 1.2E-10 64.3 5.6 55 15-73 314-368 (562)
378 PRK14722 flhF flagellar biosyn 98.1 7.9E-05 1.7E-09 56.7 11.5 140 15-159 137-315 (374)
379 COG3523 IcmF Type VI protein s 98.1 9.7E-06 2.1E-10 69.1 6.7 113 18-133 128-269 (1188)
380 cd01849 YlqF_related_GTPase Yl 98.1 1.4E-05 3E-10 53.5 6.0 71 89-164 1-71 (155)
381 KOG3859 Septins (P-loop GTPase 98.1 1.1E-05 2.3E-10 58.4 5.6 63 11-73 38-104 (406)
382 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1E-05 2.2E-10 59.7 5.8 59 16-77 162-226 (287)
383 PRK00098 GTPase RsgA; Reviewed 98.0 1.1E-05 2.5E-10 59.7 5.8 24 17-40 166-189 (298)
384 PRK13695 putative NTPase; Prov 98.0 0.0001 2.2E-09 50.2 9.9 22 16-37 1-22 (174)
385 PRK12727 flagellar biosynthesi 98.0 0.00026 5.7E-09 56.0 12.9 135 14-159 349-518 (559)
386 PRK14974 cell division protein 98.0 1.1E-05 2.3E-10 60.7 5.0 84 64-159 223-313 (336)
387 KOG0469 Elongation factor 2 [T 98.0 3.5E-05 7.6E-10 60.0 7.6 136 11-150 15-180 (842)
388 KOG0465 Mitochondrial elongati 98.0 9.9E-06 2.1E-10 64.0 4.7 118 11-132 35-168 (721)
389 cd01856 YlqF YlqF. Proteins o 98.0 1.2E-05 2.6E-10 54.7 4.3 85 71-164 2-87 (171)
390 PRK01889 GTPase RsgA; Reviewed 98.0 3.2E-05 7E-10 58.7 6.9 74 85-164 110-183 (356)
391 TIGR03596 GTPase_YlqF ribosome 97.9 1.8E-05 3.9E-10 58.1 5.2 85 71-164 4-89 (276)
392 cd02038 FleN-like FleN is a me 97.9 6.7E-05 1.5E-09 49.3 7.3 107 19-133 4-110 (139)
393 PF03266 NTPase_1: NTPase; In 97.9 3.9E-05 8.4E-10 52.2 6.2 21 17-37 1-21 (168)
394 cd03115 SRP The signal recogni 97.9 0.0001 2.2E-09 50.1 7.9 82 64-156 83-170 (173)
395 KOG0466 Translation initiation 97.9 7.3E-06 1.6E-10 60.0 2.1 147 10-162 33-225 (466)
396 PRK13796 GTPase YqeH; Provisio 97.9 6.9E-05 1.5E-09 57.1 7.5 81 76-164 58-145 (365)
397 COG1162 Predicted GTPases [Gen 97.9 2.7E-05 5.8E-10 57.1 4.9 21 17-37 166-186 (301)
398 COG0563 Adk Adenylate kinase a 97.8 1.4E-05 3.1E-10 54.7 3.0 23 16-38 1-23 (178)
399 PRK11537 putative GTP-binding 97.8 0.00042 9.1E-09 51.9 10.9 23 16-38 5-27 (318)
400 PF13207 AAA_17: AAA domain; P 97.8 1.7E-05 3.7E-10 50.7 3.0 22 17-38 1-22 (121)
401 PF00448 SRP54: SRP54-type pro 97.8 0.0003 6.5E-09 49.0 9.4 84 64-159 84-174 (196)
402 KOG0085 G protein subunit Galp 97.8 6E-06 1.3E-10 58.2 0.9 71 63-133 198-279 (359)
403 KOG0459 Polypeptide release fa 97.8 3.6E-05 7.8E-10 58.3 4.9 153 11-164 75-272 (501)
404 cd02042 ParA ParA and ParB of 97.8 0.0002 4.2E-09 44.5 7.6 82 18-111 2-84 (104)
405 PRK08118 topology modulation p 97.8 1.8E-05 4E-10 53.7 3.1 23 16-38 2-24 (167)
406 cd00009 AAA The AAA+ (ATPases 97.8 0.00022 4.7E-09 46.4 8.1 26 15-40 19-44 (151)
407 PRK11889 flhF flagellar biosyn 97.8 0.00051 1.1E-08 52.7 10.8 134 15-159 241-411 (436)
408 PRK09563 rbgA GTPase YlqF; Rev 97.8 4.5E-05 9.7E-10 56.3 4.9 84 71-163 7-91 (287)
409 KOG0463 GTP-binding protein GP 97.7 0.00013 2.7E-09 55.2 6.8 117 12-133 130-286 (641)
410 PRK07261 topology modulation p 97.7 2.7E-05 5.9E-10 53.0 3.1 23 16-38 1-23 (171)
411 COG1162 Predicted GTPases [Gen 97.7 0.00019 4.1E-09 52.8 7.5 82 79-164 71-153 (301)
412 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.0006 1.3E-08 41.2 8.5 96 18-128 2-99 (99)
413 PRK14721 flhF flagellar biosyn 97.7 0.00092 2E-08 51.8 10.7 133 15-159 191-360 (420)
414 TIGR00959 ffh signal recogniti 97.7 0.0016 3.5E-08 50.6 12.0 86 64-160 183-274 (428)
415 PF13671 AAA_33: AAA domain; P 97.7 4.1E-05 8.9E-10 50.3 2.9 20 18-37 2-21 (143)
416 cd03111 CpaE_like This protein 97.6 0.00054 1.2E-08 42.9 7.8 99 22-129 7-106 (106)
417 COG1116 TauB ABC-type nitrate/ 97.6 5.8E-05 1.2E-09 53.8 3.6 23 18-40 32-54 (248)
418 PF11111 CENP-M: Centromere pr 97.6 0.0036 7.9E-08 42.4 11.8 126 9-159 9-134 (176)
419 KOG1487 GTP-binding protein DR 97.6 0.00026 5.6E-09 51.0 6.7 95 16-113 60-163 (358)
420 COG0523 Putative GTPases (G3E 97.6 0.0014 3.1E-08 49.1 11.0 88 64-160 85-184 (323)
421 PRK05703 flhF flagellar biosyn 97.6 0.0009 2E-08 52.1 10.1 84 64-159 300-391 (424)
422 PRK12726 flagellar biosynthesi 97.6 0.00042 9.1E-09 52.9 7.9 85 64-159 286-376 (407)
423 KOG2484 GTPase [General functi 97.6 6.3E-05 1.4E-09 56.9 3.3 57 13-73 250-306 (435)
424 PRK14723 flhF flagellar biosyn 97.6 0.00076 1.6E-08 55.7 9.6 135 16-159 186-357 (767)
425 KOG3929 Uncharacterized conser 97.6 0.00011 2.3E-09 52.8 4.1 88 12-102 42-134 (363)
426 PF13555 AAA_29: P-loop contai 97.6 9.5E-05 2E-09 41.5 3.0 21 17-37 25-45 (62)
427 COG1136 SalX ABC-type antimicr 97.5 9.6E-05 2.1E-09 52.3 3.6 25 17-41 33-57 (226)
428 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00057 1.2E-08 37.5 5.8 45 86-131 12-58 (58)
429 cd02019 NK Nucleoside/nucleoti 97.5 9.2E-05 2E-09 42.6 3.0 21 18-38 2-22 (69)
430 PRK00771 signal recognition pa 97.5 0.00026 5.6E-09 55.1 6.3 84 64-159 176-266 (437)
431 PRK12724 flagellar biosynthesi 97.5 0.0011 2.3E-08 51.3 9.3 133 15-159 223-393 (432)
432 PF13521 AAA_28: AAA domain; P 97.5 6E-05 1.3E-09 50.8 2.4 22 17-38 1-22 (163)
433 PF00004 AAA: ATPase family as 97.5 8.5E-05 1.8E-09 47.9 3.0 22 18-39 1-22 (132)
434 PRK10867 signal recognition pa 97.5 0.0018 3.8E-08 50.5 10.6 85 64-160 184-275 (433)
435 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0016 3.5E-08 44.6 9.4 25 16-40 26-50 (177)
436 COG1419 FlhF Flagellar GTP-bin 97.5 0.0016 3.5E-08 49.8 9.9 113 15-133 203-351 (407)
437 PRK06217 hypothetical protein; 97.5 0.0001 2.2E-09 50.7 3.1 23 16-38 2-24 (183)
438 PF00005 ABC_tran: ABC transpo 97.5 0.0001 2.2E-09 48.1 3.0 23 17-39 13-35 (137)
439 COG1126 GlnQ ABC-type polar am 97.5 9.9E-05 2.1E-09 51.7 2.9 24 17-40 30-53 (240)
440 TIGR00235 udk uridine kinase. 97.5 0.00016 3.5E-09 50.7 4.0 26 12-37 3-28 (207)
441 PF05621 TniB: Bacterial TniB 97.4 0.0012 2.5E-08 48.8 8.3 105 11-129 57-189 (302)
442 PRK03839 putative kinase; Prov 97.4 0.00012 2.6E-09 50.1 3.0 22 17-38 2-23 (180)
443 KOG2485 Conserved ATP/GTP bind 97.4 0.00029 6.4E-09 51.8 5.0 62 12-74 140-206 (335)
444 KOG1533 Predicted GTPase [Gene 97.4 9.1E-05 2E-09 52.4 2.2 68 64-133 97-176 (290)
445 PRK06731 flhF flagellar biosyn 97.4 0.0038 8.2E-08 45.7 10.6 132 16-159 76-245 (270)
446 smart00382 AAA ATPases associa 97.4 0.00016 3.5E-09 46.5 3.3 27 16-42 3-29 (148)
447 PRK14530 adenylate kinase; Pro 97.4 0.00014 3.1E-09 51.3 3.1 21 17-37 5-25 (215)
448 COG3839 MalK ABC-type sugar tr 97.4 0.00013 2.9E-09 54.6 3.0 23 18-40 32-54 (338)
449 PRK10078 ribose 1,5-bisphospho 97.4 0.00017 3.6E-09 49.8 3.2 23 17-39 4-26 (186)
450 TIGR02322 phosphon_PhnN phosph 97.4 0.00016 3.4E-09 49.5 3.0 22 17-38 3-24 (179)
451 PF13238 AAA_18: AAA domain; P 97.4 0.00016 3.4E-09 46.4 2.8 21 18-38 1-21 (129)
452 COG1120 FepC ABC-type cobalami 97.4 0.00016 3.5E-09 52.2 3.0 21 18-38 31-51 (258)
453 PRK14532 adenylate kinase; Pro 97.4 0.00018 3.9E-09 49.6 3.0 22 17-38 2-23 (188)
454 TIGR00150 HI0065_YjeE ATPase, 97.3 0.001 2.2E-08 43.3 6.3 23 17-39 24-46 (133)
455 cd00071 GMPK Guanosine monopho 97.3 0.0002 4.3E-09 47.0 3.0 21 18-38 2-22 (137)
456 PRK05480 uridine/cytidine kina 97.3 0.00027 5.8E-09 49.6 3.9 26 13-38 4-29 (209)
457 PRK13949 shikimate kinase; Pro 97.3 0.00021 4.6E-09 48.6 3.1 22 17-38 3-24 (169)
458 PF03205 MobB: Molybdopterin g 97.3 0.00022 4.7E-09 47.0 3.0 22 17-38 2-23 (140)
459 cd02023 UMPK Uridine monophosp 97.3 0.0002 4.2E-09 49.9 3.0 21 18-38 2-22 (198)
460 TIGR03263 guanyl_kin guanylate 97.3 0.00021 4.5E-09 48.9 3.0 22 17-38 3-24 (180)
461 cd03110 Fer4_NifH_child This p 97.3 0.003 6.6E-08 43.1 8.8 86 62-157 91-176 (179)
462 PRK14738 gmk guanylate kinase; 97.3 0.00029 6.3E-09 49.5 3.8 28 11-38 9-36 (206)
463 TIGR01360 aden_kin_iso1 adenyl 97.3 0.0002 4.4E-09 49.1 3.0 22 16-37 4-25 (188)
464 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00022 4.9E-09 44.6 2.8 21 16-36 16-36 (107)
465 PRK14531 adenylate kinase; Pro 97.3 0.00024 5.1E-09 48.9 3.1 23 16-38 3-25 (183)
466 PRK08233 hypothetical protein; 97.3 0.00023 5E-09 48.6 3.0 23 16-38 4-26 (182)
467 PTZ00088 adenylate kinase 1; P 97.3 0.00024 5.2E-09 50.7 3.1 23 16-38 7-29 (229)
468 PF07728 AAA_5: AAA domain (dy 97.3 0.00025 5.3E-09 46.4 3.0 22 17-38 1-22 (139)
469 cd01428 ADK Adenylate kinase ( 97.3 0.00022 4.7E-09 49.3 2.8 22 17-38 1-22 (194)
470 COG1117 PstB ABC-type phosphat 97.3 0.0002 4.3E-09 50.2 2.5 21 17-37 35-55 (253)
471 cd03238 ABC_UvrA The excision 97.3 0.00028 6.1E-09 48.3 3.2 22 16-37 22-43 (176)
472 COG3840 ThiQ ABC-type thiamine 97.3 0.00035 7.5E-09 47.9 3.5 26 16-41 26-51 (231)
473 PF04665 Pox_A32: Poxvirus A32 97.3 0.00027 5.9E-09 50.6 3.2 28 11-38 9-36 (241)
474 PRK02496 adk adenylate kinase; 97.3 0.0003 6.4E-09 48.4 3.3 22 16-37 2-23 (184)
475 COG0194 Gmk Guanylate kinase [ 97.3 0.00023 5.1E-09 48.6 2.6 24 16-39 5-28 (191)
476 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00025 5.5E-09 48.6 2.9 21 18-38 2-22 (183)
477 cd02025 PanK Pantothenate kina 97.3 0.00024 5.2E-09 50.4 2.8 20 18-37 2-21 (220)
478 cd02036 MinD Bacterial cell di 97.3 0.011 2.5E-07 40.0 11.1 64 65-133 64-127 (179)
479 TIGR01351 adk adenylate kinase 97.3 0.00024 5.3E-09 49.9 2.8 21 17-37 1-21 (210)
480 PLN02200 adenylate kinase fami 97.2 0.00046 9.9E-09 49.5 4.2 25 13-37 41-65 (234)
481 cd01131 PilT Pilus retraction 97.2 0.0023 5E-08 44.6 7.6 22 18-39 4-25 (198)
482 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.0003 6.5E-09 49.6 3.2 23 17-39 32-54 (218)
483 COG3640 CooC CO dehydrogenase 97.2 0.0024 5.2E-08 45.4 7.5 49 81-132 149-197 (255)
484 COG3842 PotA ABC-type spermidi 97.2 0.00027 5.8E-09 53.3 3.0 23 18-40 34-56 (352)
485 TIGR00960 3a0501s02 Type II (G 97.2 0.00032 6.9E-09 49.5 3.2 23 17-39 31-53 (216)
486 PRK01889 GTPase RsgA; Reviewed 97.2 0.00048 1E-08 52.4 4.3 25 16-40 196-220 (356)
487 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00034 7.5E-09 49.1 3.2 23 17-39 29-51 (211)
488 cd01130 VirB11-like_ATPase Typ 97.2 0.00036 7.7E-09 48.2 3.2 25 15-39 25-49 (186)
489 PRK12723 flagellar biosynthesi 97.2 0.0095 2E-07 45.9 11.1 86 63-159 254-346 (388)
490 PRK06547 hypothetical protein; 97.2 0.00043 9.4E-09 47.2 3.5 26 13-38 13-38 (172)
491 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00035 7.6E-09 48.9 3.2 23 17-39 28-50 (205)
492 cd03261 ABC_Org_Solvent_Resist 97.2 0.00035 7.6E-09 49.9 3.2 23 17-39 28-50 (235)
493 cd03292 ABC_FtsE_transporter F 97.2 0.00037 7.9E-09 49.0 3.2 23 17-39 29-51 (214)
494 cd03264 ABC_drug_resistance_li 97.2 0.00033 7.1E-09 49.2 3.0 23 17-39 27-49 (211)
495 COG4525 TauB ABC-type taurine 97.2 0.00076 1.6E-08 46.8 4.6 25 17-41 33-57 (259)
496 TIGR01166 cbiO cobalt transpor 97.2 0.00035 7.5E-09 48.3 3.0 23 17-39 20-42 (190)
497 PRK00300 gmk guanylate kinase; 97.2 0.00034 7.4E-09 48.9 3.0 23 16-38 6-28 (205)
498 TIGR02673 FtsE cell division A 97.2 0.00038 8.2E-09 49.0 3.2 23 17-39 30-52 (214)
499 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.00035 7.5E-09 50.4 3.0 22 17-38 32-53 (254)
500 TIGR01313 therm_gnt_kin carboh 97.2 0.00029 6.3E-09 47.4 2.4 21 18-38 1-21 (163)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-41 Score=227.50 Aligned_cols=156 Identities=63% Similarity=1.079 Sum_probs=150.2
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
+....++.+||+|+|.+|+|||+|+.||..+.|++.+..|+++++..+++.++++.+.++||||.|+++|+.+...|+++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCc-EEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~ 164 (164)
+|++|+|||+++.+||..+..|+.+++.+...++|.++||||+|+. +.+.+..+++++|+.+++++ |+++|||.+.
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~-~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT-EKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH-hheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 9999999999999999999999999999999899999999999998 78999999999999999998 9999999863
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-38 Score=216.13 Aligned_cols=154 Identities=77% Similarity=1.240 Sum_probs=149.9
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
++....+||+++|.+++|||+|+.+|..+.|...+..|+++++..+++..++..+.+++||+.|+++|..+...|+++++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++|||++++.||+.+..|++.+..+.++++|.+|||||+|+. ..+++..+.++.+++++|++|+|+|||+|.
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~-~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE-EKRQVSKERGEALAREYGIKFFETSAKTNF 160 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc-ccccccHHHHHHHHHHhCCeEEEccccCCC
Confidence 99999999999999999999999999999999999999999998 689999999999999999999999999984
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-38 Score=211.07 Aligned_cols=151 Identities=44% Similarity=0.777 Sum_probs=145.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|..++|||||+.|+..++|.+...+|++.-+..+.+.+++..+.+.||||.|+++|.++-++|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||+++.+||..++.|+++|.+..++++-+.|||||+||. +.+++..+++..++++.++.|+|+|||||.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~-~~R~V~~~ea~~yAe~~gll~~ETSAKTg~ 153 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL-ERREVEFEEAQAYAESQGLLFFETSAKTGE 153 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh-hcccccHHHHHHHHHhcCCEEEEEeccccc
Confidence 99999999999999999999999988888899999999998 689999999999999999999999999984
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-38 Score=208.22 Aligned_cols=152 Identities=50% Similarity=0.926 Sum_probs=147.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+|++++|..|+|||+|+.+++...|.+..+.|+++++-.+.+.++++.+.+++||+.|++.|++....|++++.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+|||++..+||.++..|+..++.+..++..++|++||+||. ..+.+..+|.+.|++++++.|+++||+|++
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~-~rR~Vs~EEGeaFA~ehgLifmETSakt~~ 154 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE-ARREVSKEEGEAFAREHGLIFMETSAKTAE 154 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh-ccccccHHHHHHHHHHcCceeehhhhhhhh
Confidence 999999999999999999999999987799999999999998 788999999999999999999999999974
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=208.36 Aligned_cols=153 Identities=39% Similarity=0.679 Sum_probs=145.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..-+.+|++++|..++|||||+.+++.+.|...|..|+++++..+++.+.+..+++++|||.|+++|+++.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|||+++.+||++..+|++.+...+.. ++-++|||||.||. +.+++..++...-++++++.|.++||++|.
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~-dkrqvs~eEg~~kAkel~a~f~etsak~g~ 171 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS-DKRQVSIEEGERKAKELNAEFIETSAKAGE 171 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc-chhhhhHHHHHHHHHHhCcEEEEecccCCC
Confidence 99999999999999999999999887775 58899999999999 689999999999999999999999999985
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.6e-36 Score=209.71 Aligned_cols=151 Identities=49% Similarity=0.837 Sum_probs=139.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
.+..+||+++|..|+|||||+.++..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999999888888888888778888899999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+|||+++++||+.+..|++.+....+ +.|++|||||.||. ..+.+..++++++++.++++|++|||++|+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~-~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLA-FKRQVATEQAQAYAERNGMTFFEVSPLCNF 153 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccch-hccCCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 999999999999999999999977654 89999999999997 566788889999999999999999999985
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3e-36 Score=210.15 Aligned_cols=148 Identities=44% Similarity=0.896 Sum_probs=136.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+.|+++|..|+|||||++++..+.|...+.++.+.++..+.+.+++..+.+++||++|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh-CCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~ 164 (164)
|+++++||+.+..|+..+......+.|+++|+||+|+. ..+++..+++.++++++ ++.|++|||++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~-~~~~v~~~~~~~~a~~~~~~~~~etSAktg~ 149 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-TDREISRQQGEKFAQQITGMRFCEASAKDNF 149 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 99999999999999998877766689999999999997 46778888899999886 7899999999985
No 8
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.8e-36 Score=206.80 Aligned_cols=151 Identities=24% Similarity=0.555 Sum_probs=136.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
++..+||+++|.+|+|||||++++..+.|...+.++.+..+ ...+.+++..+.++|||++|++.|..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 46788999999999999999999999999999999987555 46778899999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEE
Q 031201 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFET 158 (164)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~ 158 (164)
|+|||+++++||+.+ ..|+..+....+ +.|++||+||+||.+. .+.+..++++++++++++ +|+||
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999998 689999987765 7999999999999642 346888999999999996 99999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|+
T Consensus 160 SAk~~~ 165 (182)
T cd04172 160 SALQSE 165 (182)
T ss_pred CcCCCC
Confidence 999985
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=201.34 Aligned_cols=153 Identities=40% Similarity=0.742 Sum_probs=142.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.+...+||+++|.+|+|||||++++.+++|...+..+++.++..+.+.+++..+.++||||.|+++|.++...+++++|+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC-CCCccchHHHHHHHHHhC-CcEEEEeccCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEYG-IKFFETVMQRQ 163 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 163 (164)
+++|||++++.||+.+..|.+++..+.. +..|++|+|||+|+.+ .+++++...++.||++.+ +||||+|||.+
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 9999999999999999999999966543 5689999999999976 348999999999999986 69999999975
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=195.94 Aligned_cols=154 Identities=48% Similarity=0.846 Sum_probs=144.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+++|.+|+|||||+.+|..+.|.+....++++++..+.+.+++.++.+.|||+.|+++|+.+.+.|++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++++|..+..|++++..+.. +++-.++|+||+|.. .++.+..++...|++++++-|+||||||.+
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke-s~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE-SERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch-hcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 99999999999999999999999988765 467778999999976 689999999999999999999999999853
No 11
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-35 Score=203.59 Aligned_cols=148 Identities=24% Similarity=0.549 Sum_probs=132.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
++||+++|.+|+|||||++++.++.|+..+.++.+..+ ...+.+++..+.+++||++|++.|..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999999989887655 46778899999999999999999999999999999999999
Q ss_pred EECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEecc
Q 031201 95 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETVMQ 161 (164)
Q Consensus 95 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (164)
||+++++||+.+ ..|+..+....+ +.|++|||||+||.+. .+.+..++++++++++++ +|+||||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789999987765 7999999999999631 345788999999999997 89999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 159 ~~~ 161 (178)
T cd04131 159 TSE 161 (178)
T ss_pred cCC
Confidence 984
No 12
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-35 Score=208.71 Aligned_cols=156 Identities=21% Similarity=0.468 Sum_probs=137.7
Q ss_pred CCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcc
Q 031201 7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (164)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~ 86 (164)
+.+......+||+++|.+|+|||+|+++|..+.|...+.++.+.++ ...+.+++..+.+.|||++|++.|..++..+++
T Consensus 5 ~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~ 83 (232)
T cd04174 5 RIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYS 83 (232)
T ss_pred ccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcC
Confidence 3344445789999999999999999999999999999999987665 456788999999999999999999999999999
Q ss_pred cccEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-
Q 031201 87 GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI- 153 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~- 153 (164)
++|++|+|||+++++||+.+ ..|+..+....+ +.|++||+||+||.+. .+.+..++++++++++++
T Consensus 84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~ 162 (232)
T cd04174 84 DSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence 99999999999999999985 789999987665 7899999999999632 367888999999999999
Q ss_pred cEEEEeccCCC
Q 031201 154 KFFETVMQRQI 164 (164)
Q Consensus 154 ~~~~~Sa~~g~ 164 (164)
+|++|||++|+
T Consensus 163 ~~~EtSAktg~ 173 (232)
T cd04174 163 VYLECSAFTSE 173 (232)
T ss_pred EEEEccCCcCC
Confidence 69999999984
No 13
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.8e-35 Score=199.22 Aligned_cols=149 Identities=45% Similarity=0.850 Sum_probs=136.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888888888777788889899999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++|+.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..+++|++|||++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-AQRDVTYEEAKQFADENGLLFLECSAKTGE 150 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 999999999999999998877766679999999999997 556677888999999999999999999985
No 14
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=194.64 Aligned_cols=153 Identities=58% Similarity=1.004 Sum_probs=145.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
..-.+.++.+|+|.+|+|||+|+.+|..+.|...|..+++.++..+++.++|.++.++|||+.|+++|+.+...|+++.+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++|||+++.+||..+.+|++++.+.++ .+|-++||||.|.+ +.+.+.-++++.|+.+.++.+||+|||..+
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~-~RrvV~t~dAr~~A~~mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDP-ERRVVDTEDARAFALQMGIELFETSAKENE 155 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCc-cceeeehHHHHHHHHhcCchheehhhhhcc
Confidence 99999999999999999999999999888 79999999999998 788888899999999999999999999753
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=7.1e-35 Score=199.41 Aligned_cols=147 Identities=33% Similarity=0.679 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|.+|+|||||+.++..+.|...+.+|.+..+ ...+.+++..+.+.|||++|++.+..++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999999999998655 456778899999999999999999999999999999999999
Q ss_pred ECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------CccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 96 DVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK---------RAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
|+++++||+.+ ..|+..+....+ +.|++|||||+||.+.. +.+..+++.++++..++ +|+||||++|+
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 679999877654 79999999999996322 35778899999999998 69999999985
No 16
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.4e-34 Score=195.59 Aligned_cols=148 Identities=54% Similarity=0.998 Sum_probs=136.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.++.+.+.+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999999888999988888888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++|+++..|++.+......+.|+++|+||.|+. ..+.+..+++..+++..+++|++|||++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE-QKRQVGDEQGNKLAKEYGMDFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999987766679999999999997 566677788999999999999999999984
No 17
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.6e-34 Score=196.41 Aligned_cols=151 Identities=77% Similarity=1.244 Sum_probs=137.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+++||++|++.+..++..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999999999999988887778888888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++|+++..|+..+......+.|+++|+||+|+. ..+.+..+++.+++...+++|+++||++|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 151 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME-EKRVVSKEEGEALADEYGIKFLETSAKANI 151 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999988766689999999999998 456667788889999999999999999984
No 18
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.2e-34 Score=195.83 Aligned_cols=147 Identities=39% Similarity=0.819 Sum_probs=139.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+++|++++|||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+++++||+.+..|+..+....+.+.|++|++||.|+. ..+++..+++++++++++++|++|||++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 147 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS-DEREVSVEEAQEFAKELGVPYFEVSAKNGE 147 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG-GGSSSCHHHHHHHHHHTTSEEEEEBTTTTT
T ss_pred ccccccccccccccccccccccccccceeeecccccc-ccccchhhHHHHHHHHhCCEEEEEECCCCC
Confidence 9999999999999999999888779999999999998 477888899999999999999999999874
No 19
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-35 Score=187.39 Aligned_cols=154 Identities=55% Similarity=1.009 Sum_probs=146.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
+--...+|++|+|...+|||||+.++++..|...+.++.++++..+++..+.+++.+++||+.|+++|+.+...++++++
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 44467889999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|++||++|++||..+..|.-.+..+.-.+.|+++|+||+|+. .++.+.-+..+.+++++|+.|||+|||.++
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd-~eRvis~e~g~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD-SERVISHERGRQLADQLGFEFFETSAKENI 169 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc-cceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence 99999999999999999999999999888899999999999998 789999999999999999999999999764
No 20
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4.8e-34 Score=193.65 Aligned_cols=148 Identities=54% Similarity=0.994 Sum_probs=134.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887787777888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|+..+......+.|+++|+||+|+. ..+....+++.++++..+++++++||++|.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME-DERVVSSERGRQLADQLGFEFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 99999999999999999977766679999999999997 455566778888999999999999999984
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.2e-34 Score=198.89 Aligned_cols=148 Identities=30% Similarity=0.622 Sum_probs=129.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|..|+|||||+.++..+.|...+.++.+..+ ...+.+++..+.++|||++|++.|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 58999999999999999999999999989999987544 45567889999999999999999999999999999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHhC-CcEEEEecc
Q 031201 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETVMQ 161 (164)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (164)
||+++++||+.+. .|...+....+ ++|++||+||.||.+.. +.+..+++++++++++ ++|++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 48887776554 79999999999996432 2356678999999998 499999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 161 ~g~ 163 (191)
T cd01875 161 NQD 163 (191)
T ss_pred CCC
Confidence 985
No 22
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=6e-34 Score=193.24 Aligned_cols=149 Identities=68% Similarity=1.117 Sum_probs=136.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999999888888888888888888888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++|..+..|+..+......+.|+++|+||.|+. ....+..+++.++++..+++|+++||++|+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-DKRVVDYSEAQEFADELGIPFLETSAKNAT 150 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEEEEECCCCc
Confidence 999999999999999999987765579999999999997 455677788999999999999999999984
No 23
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=195.56 Aligned_cols=155 Identities=50% Similarity=0.899 Sum_probs=149.1
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
..+.-++.+||+++|.+++|||-|+.++..+.|.....+|+++++....+.++++.+..+|||+.|+++|+.+...|+++
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
+.++++|||++...+|+.+.+|+.+|+.+...+++++|||||+||. ..+.+.-++++.++...++.|+++||..+
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~-~lraV~te~~k~~Ae~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN-HLRAVPTEDGKAFAEKEGLFFLETSALDA 161 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh-hccccchhhhHhHHHhcCceEEEeccccc
Confidence 9999999999999999999999999999998899999999999998 58899999999999999999999999865
No 24
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-35 Score=187.96 Aligned_cols=156 Identities=46% Similarity=0.795 Sum_probs=149.0
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
|.+.-.+.+|++++|+.|+|||+|+++|..+++......++++++-.+-+.+.++.+.++|||+.|+++|++..+.|+++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+.+.++|||++++++|+.+..|+...+...++++-+++++||.||. +.+++...++.+|+.++.+.+.++||+||+
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~-~~R~VtflEAs~FaqEnel~flETSa~TGe 157 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGE 157 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC-hhhhhhHHHHHhhhcccceeeeeecccccc
Confidence 9999999999999999999999999999998899999999999998 789999999999999999999999999995
No 25
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=5.8e-34 Score=196.13 Aligned_cols=148 Identities=28% Similarity=0.578 Sum_probs=130.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|..|+|||||++++.++.+...+.++.+.++..+.+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC----CCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE----SKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++|+++..|+..+....+...| ++|+||+|+.. .......++++++++..++++++|||++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999876665667 67899999952 122223467888999999999999999985
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.2e-34 Score=193.83 Aligned_cols=148 Identities=34% Similarity=0.561 Sum_probs=131.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+|+|.+|+|||||++++....++..+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888887444 45677889899999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||+++++||+.+..|...+.... ..++|+++|+||+|+. ..+++..+++..+++.++++|++|||++|.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 150 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE-SQRQVTTEEGRNLAREFNCPFFETSAALRH 150 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh-hcCccCHHHHHHHHHHhCCEEEEEecCCCC
Confidence 99999999999999888886643 3579999999999997 456778888999999999999999999984
No 27
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1e-33 Score=193.83 Aligned_cols=148 Identities=28% Similarity=0.590 Sum_probs=130.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|.+|+|||||++++..+.|+..+.++.+..+. ..+..++..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998889998876553 4567788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhC-CcEEEEecc
Q 031201 95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETVMQ 161 (164)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (164)
||++++++|+.+.. |+..+....+ +.|++||+||+|+.+. .+.+..+++++++++.+ ++|++|||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 99999999999974 8888876654 7999999999998642 25677888999999887 699999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 159 tg~ 161 (175)
T cd01874 159 TQK 161 (175)
T ss_pred CCC
Confidence 985
No 28
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.9e-33 Score=190.55 Aligned_cols=150 Identities=51% Similarity=0.905 Sum_probs=136.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+......++|+++|+||.|+. ..+....++...++...+++|++|||++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 151 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTEEAKAFAEKNGLSFIETSALDGT 151 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-ccccCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 9999999999999999999988776679999999999997 456677788899999889999999999984
No 29
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-33 Score=197.22 Aligned_cols=148 Identities=38% Similarity=0.757 Sum_probs=133.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999998899999888877788887 7889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC-CcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 164 (164)
||++++++|+.+..|+..+.... ..++|++||+||+|+. ..+.+..+++.++++..+ .+|++|||++|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK-KRLAKDGEQMDQFCKENGFIGWFETSAKEGI 154 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCceEEEEeCCCCC
Confidence 99999999999999998886542 2478999999999997 356677888999999999 599999999984
No 30
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.6e-33 Score=193.40 Aligned_cols=151 Identities=52% Similarity=0.961 Sum_probs=134.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC----------CEEEEEEEeeCCCccccchhhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT 82 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~d~~g~~~~~~~~~ 82 (164)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+. +..+.+.|||++|++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 367999999999999999999999999999999998888776666554 4568999999999999999999
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEecc
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
.+++++|++|+|||++++++|..+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++.+++++.+++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-DQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-hcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999999999887654 3478999999999997 456677788999999999999999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 161 ~~~ 163 (180)
T cd04127 161 TGT 163 (180)
T ss_pred CCC
Confidence 984
No 31
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.3e-33 Score=199.22 Aligned_cols=148 Identities=25% Similarity=0.538 Sum_probs=129.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+|+|.+|+|||||++++..+.|+..+.++...++. ..+.+++..+.+.|||++|++.|..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999999999876554 5778899999999999999999999999999999999999
Q ss_pred EECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEecc
Q 031201 95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETVMQ 161 (164)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (164)
||++++++|+.+.. |...+.... .+.|++||+||+||.+. ..++..+++..++++.++ +|+||||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999999954 776665554 47999999999999632 124677889999999996 99999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 159 ~~~ 161 (222)
T cd04173 159 SSE 161 (222)
T ss_pred cCC
Confidence 864
No 32
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.3e-33 Score=190.16 Aligned_cols=148 Identities=34% Similarity=0.761 Sum_probs=134.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||+++++++.+...+.++.+.++....+..++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999999999998888888888899999999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|.+++++++.+..|+..+..... .+.|+++|+||+|+. .......++...++.+.+++++++||++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT-KHRAVSEDEGRLWAESKGFKYFETSACTGE 153 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc-cccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 99999999999999999977654 469999999999996 345667777888889899999999999985
No 33
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.7e-33 Score=189.23 Aligned_cols=150 Identities=47% Similarity=0.862 Sum_probs=135.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 57899999999999999999999999888888888877877888888888899999999999999989999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
|||++++++|+.+..|+..+......++|+++|+||+|+. ..+....+++..+++..++ .++++||++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE-EQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 9999999999999999999987766689999999999997 4556677788899998887 78999999984
No 34
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.3e-33 Score=197.46 Aligned_cols=152 Identities=26% Similarity=0.525 Sum_probs=134.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.......+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++
T Consensus 7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence 34448889999999999999999999999999999999999888877887888889999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+++|+|||++++++|+.+..|+..+..... +.|+++|+||+|+.+ +.+..+++ ++++..+++|++|||++|+
T Consensus 87 ~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~ 158 (219)
T PLN03071 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNY 158 (219)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCC
Confidence 999999999999999999999999987654 799999999999962 33334444 7888889999999999985
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.8e-33 Score=189.16 Aligned_cols=147 Identities=39% Similarity=0.689 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++..+.+...+.++.+ +.+...+.+++..+.+.|||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998888777776 445567788888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++|+.+..|++.+..... .+.|+++|+||+|+. ..+.+..+++..+++..+++++++||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE-DERVVSREEGQALARQWGCPFYETSAKSKI 149 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceecHHHHHHHHHHcCCeEEEecCCCCC
Confidence 99999999999999988876543 479999999999997 355566777888888888999999999984
No 36
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=6.3e-33 Score=188.71 Aligned_cols=151 Identities=50% Similarity=0.912 Sum_probs=136.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+..+||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..+...+++++|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999988888888888887777888888899999999999999998999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+......+.|+++|+||.|+. ....+..+++..++...+++|+++||++|+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE-SRREVSYEEGEAFAKEHGLIFMETSAKTAS 152 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999988766689999999999997 455677788899999999999999999874
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.7e-33 Score=196.87 Aligned_cols=148 Identities=33% Similarity=0.577 Sum_probs=134.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-EEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+||+++|.+|+|||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999998888888864 578999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++|+.+..|+..+..... .++|+++|+||.|+. ..+.+..+++..+++.++++++++||++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-~~~~v~~~~~~~~~~~~~~~~~~iSAktg~ 152 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-HNRTVKDDKHARFAQANGMESCLVSAKTGD 152 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 999999999999999999877643 357899999999997 466777888999999999999999999985
No 38
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=5.3e-33 Score=190.15 Aligned_cols=147 Identities=32% Similarity=0.631 Sum_probs=129.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|.+|+|||||+.++..+.+...+.++.. ..+...+..++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999999888888876 344556778888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEeccC
Q 031201 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETVMQR 162 (164)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (164)
|+++++||+.+. .|+..+....+ +.|++||+||+|+.+. .+.+..+++.+++++.+. +|++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 48888776654 7999999999999632 235778889999999995 999999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 160 ~~ 161 (174)
T cd01871 160 QK 161 (174)
T ss_pred cC
Confidence 85
No 39
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=9e-33 Score=194.95 Aligned_cols=153 Identities=49% Similarity=0.907 Sum_probs=140.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++++++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45678999999999999999999999999988888999988888888899999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|||++++++|+.+..|+..+......+.|+++|+||+|+. ..+.+..+++..++...+++|+++||++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN-HLRSVAEEDGQALAEKEGLSFLETSALEAT 160 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988776789999999999997 456677788999999999999999999984
No 40
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.1e-33 Score=191.67 Aligned_cols=148 Identities=51% Similarity=0.880 Sum_probs=134.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998888888888887788888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++|+.+..|+..+......+.|+++|+||.|+. ..+.+..+++..+++..+++|+++||++|.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV-NNKVVDSNIAKSFCDSLNIPFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc-ccccCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999988766678999999999997 456667788888999999999999999874
No 41
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=7e-33 Score=188.90 Aligned_cols=148 Identities=36% Similarity=0.697 Sum_probs=130.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+++|.+|+|||||++++.++.|...+.++.+.++....+.+++..+.+++||++|++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999988887888888989999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCC-ccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++++++.+..|+..+... .+...|+++|+||+|+.+... ....+++..++++.+++|++|||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCC
Confidence 99999999999999987654 344678999999999963322 334566778888889999999999984
No 42
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=7.9e-33 Score=186.80 Aligned_cols=148 Identities=47% Similarity=0.828 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888788888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+++++++..+..|+..+......+.|+++++||.|+. ..+.+..+++..+++..+++|+++||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA-DQREVTFLEASRFAQENGLLFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-hhccCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 99999999999999998877766789999999999997 456677888999999999999999999984
No 43
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1e-32 Score=192.46 Aligned_cols=150 Identities=59% Similarity=1.008 Sum_probs=135.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+..+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..++++++++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999998888898888887788888888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++|+.+..|+..+..... ..|++||+||+|+. ....+..+++.++++..+++|+++||++|.
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDP-ERKVVETEDAYKFAGQMGISLFETSAKENI 153 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECCCCc
Confidence 99999999999999999999877654 78999999999997 455566778889999999999999999984
No 44
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.4e-32 Score=187.25 Aligned_cols=151 Identities=42% Similarity=0.736 Sum_probs=134.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
+...+||+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45779999999999999999999999999888888888877777888899999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
++|||++++++++.+..|...+.... ..+.|+++|+||+|+. .+.+..+++.++++++++ +++++||++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDAT 157 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 99999999999999999998876543 2468999999999996 566677889999999985 89999999984
No 45
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=8.1e-33 Score=186.77 Aligned_cols=147 Identities=37% Similarity=0.709 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC--CEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
+||+++|.+|+|||||+++++++.+...+.++.+.++....+.++ +..+.+++||+||++.+..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888888888877777776 778899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+..... +.|+++|+||+|+. ..+.+..++++.+++..+++++++||++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLL-DQAVITNEEAEALAKRLQLPLFRTSVKDDF 149 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 9999999999999999998876554 79999999999997 455666788999999999999999999874
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.4e-33 Score=191.55 Aligned_cols=148 Identities=53% Similarity=1.002 Sum_probs=132.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+||+++|++|+|||||++++.+..+.. .+.++.+.++....+.+++..+.+.|||+||++.+...+..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988864 5677777777777788888899999999999999999899999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++|+.+..|+..+......++|+++|+||+|+. ..+.+..+++..+++..+++|+++||++|+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~ 149 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS-GERVVKREDGERLAKEYGVPFMETSAKTGL 149 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch-hccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999999988776689999999999997 356667778899999999999999999984
No 47
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=190.58 Aligned_cols=149 Identities=38% Similarity=0.626 Sum_probs=132.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|.+|+|||||++++.++.+...+.++.+.++ .+.+.+++..+.+.+||++|++.+..++..++++++++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999999888888877555 5677888989999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++|+.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..+++..+++|++|||++|+
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~ 153 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-SERQVSTGEGQELAKSFGIPFLETSAKQRV 153 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHhCCEEEEeeCCCCC
Confidence 9999999999999999988876543 478999999999997 456666777888999999999999999985
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.6e-32 Score=185.91 Aligned_cols=148 Identities=36% Similarity=0.665 Sum_probs=129.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 36999999999999999999999888887777776444 45677888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+. ....+..+++..+++..+++|++|||++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWGCAFLETSAKAKI 149 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch-hccEEcHHHHHHHHHHhCCEEEEeeCCCCC
Confidence 99999999999999988887643 3579999999999997 445566677888999999999999999984
No 49
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.6e-32 Score=186.05 Aligned_cols=148 Identities=47% Similarity=0.873 Sum_probs=133.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-hhhhhhcccccEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL 93 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-~~~~~~~~~~~~~i~ 93 (164)
.+||+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999988888888888888888889999999999999998886 578888999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
|||++++++++.+..|+..+.... ..++|+++|+||+|+. ..+++..+++.++++..+++|++|||+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 151 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR-EQIQVPTDLAQRFADAHSMPLFETSAKDP 151 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch-hhcCCCHHHHHHHHHHcCCcEEEEeccCC
Confidence 999999999999999999887754 3579999999999997 56667778889999999999999999983
No 50
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.9e-32 Score=184.24 Aligned_cols=148 Identities=56% Similarity=1.012 Sum_probs=134.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|+..+..+...++|+++++||+|+. ..+....+++.++++..+++++++||++|+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE-DQRQVSREEAEAFAEEHGLPFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-cccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999988775689999999999987 345667788889999999999999999874
No 51
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-32 Score=192.25 Aligned_cols=149 Identities=45% Similarity=0.820 Sum_probs=133.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
.+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+ ++..+.+++||++|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888888888888777776 4667899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++|+.+..|+..+..... ..+|++||+||.|+. ..+.+..+++.++++.++++|+++||++|+
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~ 152 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-SQRQVTREEAEKLAKDLGMKYIETSARTGD 152 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc-cccccCHHHHHHHHHHhCCEEEEEeCCCCC
Confidence 9999999999999999998876543 467889999999997 456677788999999999999999999985
No 52
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.4e-32 Score=191.27 Aligned_cols=151 Identities=50% Similarity=0.886 Sum_probs=137.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
.+.+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888887788888888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++|+.+..|+..+......+.|+++|+||+|+. ..+.+..+++.+++++++++|+++||++|+
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 154 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-HRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999988877666689999999999997 456677888999999999999999999874
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.2e-32 Score=184.94 Aligned_cols=148 Identities=35% Similarity=0.649 Sum_probs=129.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|.+|+|||||++++..+.+...+.++.. +++...+..++..+.++|||++|++++..++..+++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888777765 45567778888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++|+++..|+..+..... .+.|+++|+||+|+. ....+..++...+++..++++++|||++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE-SEREVSSAEGRALAEEWGCPFMETSAKSKT 149 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcCccCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 999999999999999988876543 579999999999996 345556667888888889999999999884
No 54
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.5e-34 Score=184.48 Aligned_cols=152 Identities=46% Similarity=0.810 Sum_probs=140.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
-.+.++++++|.+-+|||+|+++++.+++.+-.+||.+++++.+-+.. +|..+.+++||+.|+++|+++.+.|++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 357899999999999999999999999999999999999998887766 6889999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+++|||++|.+||+++..|+++...+.. ..+-+.+||+|+||. ..+++..+|++.|++.+++.|+|+||++|.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETSAKNGC 159 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEecccCCC
Confidence 9999999999999999999998866544 456678999999998 899999999999999999999999999984
No 55
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.8e-32 Score=190.01 Aligned_cols=146 Identities=32% Similarity=0.587 Sum_probs=128.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.++|||++|++.+..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998887777776443 4556778888899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++++|+.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..++...+++|+++||++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~ 149 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV-YEREVSTEEGAALARRLGCEFIEASAKTNV 149 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 9999999999999988866542 478999999999997 456677778889999999999999999985
No 56
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.1e-32 Score=191.99 Aligned_cols=144 Identities=31% Similarity=0.571 Sum_probs=124.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+|+|.+|+|||||+++|..+.+.. +.++.+.++....+ ..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 46677655554433 4578999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCCccchHHHHHHHHHhC-----
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE------------------SKRAVPTSKGQALADEYG----- 152 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~----- 152 (164)
|++++++|+.+..|+..+......+.|++||+||+|+.+ ..+++..++++.++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888777765556799999999999974 257788899999999987
Q ss_pred ---------CcEEEEeccCCC
Q 031201 153 ---------IKFFETVMQRQI 164 (164)
Q Consensus 153 ---------~~~~~~Sa~~g~ 164 (164)
++|+||||++|+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~ 176 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGY 176 (220)
T ss_pred cccccccccceEEEeeCCCCC
Confidence 689999999985
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=5.4e-32 Score=183.85 Aligned_cols=145 Identities=30% Similarity=0.663 Sum_probs=128.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888898888887777777888899999999999999988889999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|+..+..... +.|+++|+||+|+.+ .... .+..++++..+++++++||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~ 145 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNY 145 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999988766 899999999999962 2222 34567777888899999999985
No 58
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=7e-32 Score=182.03 Aligned_cols=148 Identities=41% Similarity=0.729 Sum_probs=134.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++|+.+..|+..+......+.|+++++||+|+. .......++...+++..+++++++||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS-DKRQVSTEEGEKKAKELNAMFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEEeCCCCC
Confidence 99999999999999998877665579999999999996 456667788889999999999999999884
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5.8e-32 Score=182.81 Aligned_cols=144 Identities=31% Similarity=0.589 Sum_probs=126.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|.+|+|||||++++.+..+.+.+.++.+.++.......++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888787777777777788888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|.+++.+++.+..|+..+....+ +.|+++|+||+|+... ..++...+++..+++++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~ 144 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGT 144 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999976544 7899999999998521 2345667778888999999999984
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=5.6e-32 Score=183.49 Aligned_cols=147 Identities=32% Similarity=0.510 Sum_probs=127.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|.+|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+||++|++.+..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998887777776433 455566777889999999999999998888999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|++.+..... .+.|+++|+||+|+. ..+.+..+++..++...+++|++|||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~ 151 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES-HKREVSSNEGAACATEWNCAFMETSAKTNH 151 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc-ccCeecHHHHHHHHHHhCCcEEEeecCCCC
Confidence 99999999999999887766432 479999999999997 345667777888888899999999999985
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.3e-32 Score=183.65 Aligned_cols=147 Identities=41% Similarity=0.699 Sum_probs=128.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+|+|++|+|||||++++.+..+...+.++.+ +.+...+..++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999988887777765 344566777888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|...+.... ..+.|+++|+||+|+. ..+.+..+++..+++..+++|++|||++|+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE-SERVVSTEEGKELARQWGCPFLETSAKERV 148 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceEcHHHHHHHHHHcCCEEEEeecCCCC
Confidence 9999999999999988876643 3478999999999997 445667778888999999999999999984
No 62
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.1e-32 Score=187.57 Aligned_cols=147 Identities=30% Similarity=0.581 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
.||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999888888887554 355677888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccchHHHHHHHHHhC-CcEEEEeccC
Q 031201 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETVMQR 162 (164)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (164)
|++++++|+.+. .|+..+....+ +.|+++|+||+|+.+... .+..+++.++++..+ ++|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999997 48888876654 799999999999964221 345677888888887 6999999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 159 ~~ 160 (189)
T cd04134 159 NR 160 (189)
T ss_pred CC
Confidence 84
No 63
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.3e-31 Score=181.10 Aligned_cols=149 Identities=47% Similarity=0.822 Sum_probs=134.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|++|+|||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998887788887777778888899899999999999999998899999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++++.+..|+..+........|+++++||+|+. ..+....++...++...+++++++||++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE-SKRQVSTEEAQEYADENGLLFFETSAKTGE 149 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-ccCcCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 999999999999999999988765679999999999987 355667778889999999999999999984
No 64
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.5e-31 Score=180.20 Aligned_cols=147 Identities=35% Similarity=0.599 Sum_probs=128.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|++|+|||||++++.++.+...+.++.+.. +...+.+++..+.+.+||++|++.+..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999999888888877643 356677888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....+++.++++..+++++++||++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQ 148 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCC
Confidence 999999999999999888876543 4789999999999963 4566777888988899999999999984
No 65
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.4e-31 Score=182.93 Aligned_cols=147 Identities=33% Similarity=0.595 Sum_probs=128.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.++.+...+.++.. +.+...+.+++..+.+++||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999888887763 455567788888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEeccC
Q 031201 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETVMQR 162 (164)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (164)
|++++++|+.+. .|+..+..... +.|+++|+||.|+... .+.+..+++..++++.++ +|++|||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999986 58888875443 6899999999999632 456777889999999998 999999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|.
T Consensus 159 ~~ 160 (173)
T cd04130 159 QK 160 (173)
T ss_pred CC
Confidence 84
No 66
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=9.6e-32 Score=187.26 Aligned_cols=148 Identities=22% Similarity=0.378 Sum_probs=122.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch--------hhhhhccc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG 87 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------~~~~~~~~ 87 (164)
+||+|+|.+|+|||||++++.++.+...+.++.+.+++...+.+++..+.++|||+||...+.. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888887677667778889889999999999654321 13345789
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-HhCCcEEEEeccCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETVMQRQ 163 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g 163 (164)
+|++|+|||+++++||+.+..|++.+.... ..++|+++|+||+|+.+ .+.+..++...+++ ..+++|++|||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999999998887654 35799999999999973 45555666666654 56899999999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 160 ~ 160 (198)
T cd04142 160 W 160 (198)
T ss_pred C
Confidence 5
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.9e-31 Score=180.34 Aligned_cols=148 Identities=37% Similarity=0.606 Sum_probs=128.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|++|+|||||++++.+..+...+.++.+.. +.....+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988877777776633 345567788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++.+++.+..|+..+.... ..+.|+++++||+|+. ..+.+..+++.++++..+++++++||++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE-HQRKVSREEGQELARKLKIPYIETSAKDRL 150 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc-ccceecHHHHHHHHHHcCCcEEEeeCCCCC
Confidence 99999999999999998887643 3478999999999997 445566677889999999999999999984
No 68
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.4e-31 Score=186.00 Aligned_cols=147 Identities=28% Similarity=0.494 Sum_probs=119.7
Q ss_pred eeeEEEEcCCCCcHHHHHH-HHhcCC-----CCCcccceeee-EEEEEE--------EEECCEEEEEEEeeCCCccccch
Q 031201 15 LIKLLLIGDSGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT 79 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~d~~g~~~~~~ 79 (164)
.+||+++|..|+|||||+. ++.++. +...+.||.+. +.+... ..+++..+.++|||++|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 665543 45566777742 322222 25688899999999999875 3
Q ss_pred hhhhhcccccEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------CCccc
Q 031201 80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES------------------KRAVP 140 (164)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------------~~~~~ 140 (164)
+...+++++|++|+|||+++++||+.+. .|+..+....+ +.|+++|+||+||.+. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 49888877654 7899999999999632 46788
Q ss_pred hHHHHHHHHHhCCcEEEEeccCCC
Q 031201 141 TSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.+++++++++++++|+||||++|+
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~ 182 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQF 182 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCC
Confidence 899999999999999999999985
No 69
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=176.57 Aligned_cols=152 Identities=48% Similarity=0.909 Sum_probs=144.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
+-...+||+++|..|+|||+|+++++.+-|++....++++++..+++.++++++.++|||+.|+++|+++...|++.++.
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
+|+|||++-..+|+-+..|+.++.++...++--++|+||+|+. +.++++.+.+++|++...+-|.++||+..
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~-drrevp~qigeefs~~qdmyfletsakea 154 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA-DRREVPQQIGEEFSEAQDMYFLETSAKEA 154 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh-hhhhhhHHHHHHHHHhhhhhhhhhcccch
Confidence 9999999999999999999999999888788889999999998 67889999999999999999999999853
No 70
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2e-31 Score=184.19 Aligned_cols=147 Identities=29% Similarity=0.612 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+||+|+|++|+|||||+++|.++.+...+.++.+.++. ..+... +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 48999999999999999999999998888888776553 345554 7788999999999999999999999999999999
Q ss_pred EECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC---CCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES---KRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
||++++++|+.+.. |+..+....+ +.|+++|+||.|+... .+.+..+++.+++...++ ++++|||++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCP-GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 99999999999975 8877765544 7999999999999632 235667889999999998 99999999985
No 71
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.7e-31 Score=183.70 Aligned_cols=148 Identities=32% Similarity=0.614 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+||+|+|.+|+|||||+++|.++.+.. .+.++.+.++....+..++..+.+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998875 6778887777777888899999999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---CCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES---KRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++|+.+..|+..+..... +.|+++|+||+|+.+. .+.+..+++.+++...+++++++||++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999998877544 7899999999998532 23455567888888889999999999974
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3.4e-31 Score=179.21 Aligned_cols=147 Identities=31% Similarity=0.648 Sum_probs=127.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+||+++|++|+|||||++++... .++..+.++.+.++....+..+ +..+.+.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6778888888888777777664 56789999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|++.+.... .+.|+++|+||+|+. ...++...++..+....++++++|||++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLA-DKAEVTDAQAQAFAQANQLKFFKTSALRGV 150 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 9999999999999999999987765 368999999999996 445555666677788888999999999984
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.9e-31 Score=184.80 Aligned_cols=140 Identities=26% Similarity=0.615 Sum_probs=125.5
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh
Q 031201 21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (164)
Q Consensus 21 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (164)
+|.+|+|||||+++++.+.+...+.++.+.++....+.+++..+.+.|||++|++.|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899998888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 101 SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.||+.+..|+..+..... ++|+++|+||+|+.. +.+..+ ...+++..+++|++|||++|+
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~-~~~~~~~~~~~~~e~SAk~~~ 140 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD--RKVKAK-SITFHRKKNLQYYDISAKSNY 140 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc--ccCCHH-HHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999987654 799999999999952 334433 457888889999999999985
No 74
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=6.6e-31 Score=177.31 Aligned_cols=147 Identities=50% Similarity=0.930 Sum_probs=131.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778888887777777778888899999999999999988899999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|.+++++++.+..|+..+.... ..+.|+++|+||+|+. ......++..++++..+++++++||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE--NREVTREEGLKFARKHNMLFIETSAKTRD 148 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc--ccccCHHHHHHHHHHcCCEEEEEecCCCC
Confidence 9999999999999999887765 3579999999999996 44556678899999999999999999984
No 75
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.2e-31 Score=181.03 Aligned_cols=145 Identities=32% Similarity=0.648 Sum_probs=126.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEEC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (164)
|+|+|++|+|||||++++.++.+...+.++.... +...+..++..+.+.+||++|++.+..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999999988887777644 345677788889999999999999999999999999999999999
Q ss_pred CChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 98 TDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 98 ~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
+++++|+.+.. |+..+....+ +.|+++|+||+|+... ...+..+++.++++..++ +|++|||++|+
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 99999999964 8888877655 7999999999999632 123667888999999997 99999999984
No 76
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.2e-31 Score=178.66 Aligned_cols=142 Identities=21% Similarity=0.394 Sum_probs=119.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|+.|+|||||+.++..+.|...+.++.+ .+...+.+++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999888776655432 3346788899889999999999864 34667899999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCccchHHHHHHHHHh-CCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~ 164 (164)
|+++++||+.+..|+..+..... .+.|+++|+||.|+.. ..+.+..+++++++++. +++|++|||++|+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 99999999999999999977653 5789999999999853 35677788889999887 4899999999984
No 77
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=8.2e-31 Score=176.64 Aligned_cols=148 Identities=40% Similarity=0.757 Sum_probs=131.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||+++++++.+...+.++.+.+.....+...+..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777677666666677777788889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|++.+......+.|+++++||+|+. ...++..+++.++.+..+++++++||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE-RQRVVSKSEAEEYAKSVGAKHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999888776679999999999997 455666777888888899999999999974
No 78
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=3.7e-31 Score=179.41 Aligned_cols=145 Identities=37% Similarity=0.548 Sum_probs=123.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-cchhhhhhcccccEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~~~~~~i~v~ 95 (164)
||+++|++|+|||||+++++.+.+...+.++.... +...+.+++..+.+.+||+||+.. .......+++++|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999988877777766433 345667788889999999999885 3455677889999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++..+++..+++|++|||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 148 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL-HYRQVSTEEGEKLASELGCLFFEVSAAED 148 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH-HhCccCHHHHHHHHHHcCCEEEEeCCCCC
Confidence 9999999999999998887754 3479999999999996 45666778889999999999999999987
No 79
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=6.4e-31 Score=188.47 Aligned_cols=147 Identities=25% Similarity=0.440 Sum_probs=127.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|.+|+|||||+++++++.+...+.++.+ ++..+.+.+++..+.+.|||++|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888776 566677888999999999999999999888888899999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH-hCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~ 164 (164)
|+++++||+++..|++.+... ...+.|+++|+||+|+. ..+++..+++.+++.. .+++|+++||++|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~-~~~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD-FPREVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch-hccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 999999999999998888653 22478999999999997 3456777778887764 46799999999984
No 80
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=3.5e-30 Score=175.08 Aligned_cols=151 Identities=47% Similarity=0.857 Sum_probs=133.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+..+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988888777888877777778888888899999999999999988889999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+......++|+++|+||+|+. ..+.+..+..+.+.+....++++|||++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 155 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA-ERREVSQQRAEEFSDAQDMYYLETSAKESD 155 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999998887766679999999999997 455566666778888778899999999985
No 81
>PLN03118 Rab family protein; Provisional
Probab=99.98 E-value=3.2e-30 Score=181.44 Aligned_cols=154 Identities=50% Similarity=0.848 Sum_probs=131.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.......+||+|+|++|+|||||+++|++..+. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 345566899999999999999999999998764 5667777777777788888889999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHH-HHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRN-WIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++++|+.+.. |...+..... .+.|+++|+||+|+. ..+.+..++...++..++++|++|||++|+
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~-~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE-SERDVSREEGMALAKEHGCLFLECSAKTRE 163 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999987 6565554332 468999999999997 445566778888999999999999999884
No 82
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=1.7e-30 Score=177.42 Aligned_cols=147 Identities=29% Similarity=0.575 Sum_probs=126.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++..+.+...+.++... .....+.+++..+.+.+||++|++.+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999998777777653 34456778888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHhCC-cEEEEeccC
Q 031201 96 DVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETVMQR 162 (164)
Q Consensus 96 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (164)
|+.++++|+.+.. |...+... ..+.|+++|+||+|+.+.. ..+..+++..+++..++ +|++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 9999999999974 87777665 4589999999999986332 35667889999999997 899999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 159 ~~ 160 (174)
T cd04135 159 QK 160 (174)
T ss_pred CC
Confidence 84
No 83
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=2.7e-30 Score=175.93 Aligned_cols=148 Identities=43% Similarity=0.777 Sum_probs=129.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888887787778888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC-CcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|.+.+..... .+.|+++|+||+|+.+ ......++.+.+.+..+ ++++++||++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 153 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAI 153 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCC
Confidence 99999999999888877655432 3699999999999973 45566777888888887 699999999984
No 84
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.1e-33 Score=180.06 Aligned_cols=152 Identities=51% Similarity=0.965 Sum_probs=139.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC---------CEEEEEEEeeCCCccccchhhh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRTITT 82 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~d~~g~~~~~~~~~ 82 (164)
-.+.+|++.+|.+|+|||+|+.+++.+.|.....++.++++..+.+.++ +.++.+++||+.|+++|+++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 3577899999999999999999999999999999999999988877662 3568999999999999999999
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEecc
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
.+++++-+++++||++++.||-+++.|+.++..+ ..+++.+++++||+||+ ..+.+..+++..+++++++||||+||-
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~-~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE-DQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh-hhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999999999553 34588899999999998 788999999999999999999999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
||.
T Consensus 165 tg~ 167 (219)
T KOG0081|consen 165 TGT 167 (219)
T ss_pred cCc
Confidence 884
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.1e-30 Score=177.84 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=127.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
.+.+||+++|.+|+|||||++++.++.+. ..+.+|.+.++....+..++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46899999999999999999999999998 88888888777767788888888999999999999988889999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
++|||++++++++.+..|+..+.. ..++|+++|+||+|+.+ .+.....+..++++..++ .++++||++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDE-QQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccc-cccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 999999999999999888876633 23689999999999963 333334456788888887 57999999984
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=3.7e-30 Score=172.41 Aligned_cols=148 Identities=54% Similarity=0.975 Sum_probs=134.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|+..+........|+++++||+|+. .......++.++++...+++++++||++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE-DQRQVSTEEAQQFAKENGLLFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc-ccccccHHHHHHHHHHcCCeEEEEecCCCC
Confidence 99999999999999999988875679999999999996 345566788999999999999999999874
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=2.7e-30 Score=175.70 Aligned_cols=147 Identities=37% Similarity=0.660 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.++.+...+.++.+.. +...+..++..+.+++||+||++.+..++..++++++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999999888777777643 4566778888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC-CcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|.+.+.... ..+.|+++++||.|+. ..+....+++..+++..+ ++++++||++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE-DDRQVSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence 9999999999999988886543 3579999999999997 456667777888888888 799999999984
No 88
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=6.3e-32 Score=175.25 Aligned_cols=154 Identities=34% Similarity=0.700 Sum_probs=144.4
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
...+...+||+++|..-+|||||+-+++.++|...-.++..-.+..+.+.+.+.+..+.|||+.|+++|..+-+.|++++
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 45667899999999999999999999999999888777777778888889999999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
+++++|||+++++||+.++.|..+++...+..+-+++|+||+||. +++++..++++.++...|+.|+++|||.+
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE-eeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE-EERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH-HhhhhhHHHHHHHHHhhchhheecccccc
Confidence 999999999999999999999999999988788999999999998 78999999999999999999999999976
No 89
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=166.90 Aligned_cols=153 Identities=44% Similarity=0.850 Sum_probs=145.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.-.+.+|.+|+|.-|+|||+|+..|...+|...-..++++++..+-+.+.+.++.+++||+.|+++|+...+.|++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.++|||++.+.++.++..|+...++...++.-+++++||.||. ..+.+..+++++|+.++++.|.++|||||+
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle-~qrdv~yeeak~faeengl~fle~saktg~ 159 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-SQRDVTYEEAKEFAEENGLMFLEASAKTGQ 159 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh-hcccCcHHHHHHHHhhcCeEEEEecccccC
Confidence 9999999999999999999999988877788899999999998 789999999999999999999999999985
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.6e-30 Score=180.55 Aligned_cols=146 Identities=29% Similarity=0.436 Sum_probs=123.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcc-cccEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL 93 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~-~~~~~i~ 93 (164)
+||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++..+.+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888876 6677776656777888888888999999999987 223344566 9999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++.+|+.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.+++...+++|+++||++|.
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~ 149 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA-RSREVSVQEGRACAVVFDCKFIETSAGLQH 149 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc-ccceecHHHHHHHHHHcCCeEEEecCCCCC
Confidence 9999999999999999988876542 479999999999997 456677777889999999999999999874
No 91
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=1.2e-29 Score=176.64 Aligned_cols=146 Identities=21% Similarity=0.400 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-----CEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
+||+++|.+|+|||||++++.++.+...+.+|.+.++..+.+.++ +..+.++|||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999889999887777777663 567899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCccch----HHHHHH
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKVLVGNKADMDESKRAVPT----SKGQAL 147 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~ 147 (164)
+|+|||+++++||+.+..|+..+.... ..++|++|||||.|+.+ ++.+.. .....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~-~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP-EKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh-hcccchHHHhhHhhhH
Confidence 999999999999999999999986542 24689999999999963 333322 235678
Q ss_pred HHHhCCcEEEEeccC
Q 031201 148 ADEYGIKFFETVMQR 162 (164)
Q Consensus 148 ~~~~~~~~~~~Sa~~ 162 (164)
+++.+++.++.+++.
T Consensus 160 a~~~~~~~i~~~c~~ 174 (202)
T cd04102 160 AEQGNAEEINLNCTN 174 (202)
T ss_pred HHhcCCceEEEecCC
Confidence 889999998888874
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.1e-29 Score=171.39 Aligned_cols=148 Identities=31% Similarity=0.651 Sum_probs=124.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+.||+|+|++|+|||||++++.++.+...+.++....+ ...+.+++..+.+.+||++|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 36899999999999999999999999888888776444 34667788889999999999999988888889999999999
Q ss_pred EECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEecc
Q 031201 95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETVMQ 161 (164)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (164)
||++++++|+.+.. |...+..... +.|+++|+||+|+.+. ...+..++.+.+++..+. ++++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 99999999999864 7777766544 7899999999998632 133456778888888875 89999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 159 ~~~ 161 (175)
T cd01870 159 TKE 161 (175)
T ss_pred cCc
Confidence 874
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.4e-29 Score=168.43 Aligned_cols=146 Identities=39% Similarity=0.686 Sum_probs=128.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+|+|++|+|||||++++++..+...+.++.. +.....+..++..+.+++||+||+..+...+..+++++|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999999888777777766 5555667777778899999999999999989999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.+++++++.+..|...+..... ...|+++|+||+|+. .......+++..+++..+++++++||++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 147 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE-NERQVSKEEGKALAKEWGCPFIETSAKDNI 147 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc-ccceecHHHHHHHHHHcCCcEEEeccCCCC
Confidence 9999999999999888877655 579999999999997 346667788999999999999999999874
No 94
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=175.85 Aligned_cols=148 Identities=38% Similarity=0.618 Sum_probs=137.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|.+|+|||+|..++....|...|+++++ +.+.+.+.+++..+.+.|+|++|++.+..+...++.+.+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 6778889999999999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
||+++++.||+.+..+++.+... ....+|+++||||+|+. ..+.+..++++.++..++++|+|+||+.+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~-~~R~V~~eeg~~la~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE-RERQVSEEEGKALARSWGCAFIETSAKLN 150 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch-hccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence 99999999999999999888443 33568999999999998 56999999999999999999999999975
No 95
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=8.2e-32 Score=170.25 Aligned_cols=144 Identities=50% Similarity=0.953 Sum_probs=134.9
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEEC
Q 031201 19 LLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (164)
Q Consensus 19 ~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (164)
+++|.+++|||+|+-++-.+.|.. ...++.++++..+-+..++.++.+++||+.|+++|++....|++++|.++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999998887777654 5678889999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 98 TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
.+..||+..+.|+.++.++.++.+.+.+++||+|++ .++.+..++.+.+++.+++||.++|||||
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a-~er~v~~ddg~kla~~y~ipfmetsaktg 145 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA-HERAVKRDDGEKLAEAYGIPFMETSAKTG 145 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc-hhhccccchHHHHHHHHCCCceecccccc
Confidence 999999999999999999988889999999999997 67889999999999999999999999998
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=7.7e-29 Score=167.39 Aligned_cols=147 Identities=35% Similarity=0.601 Sum_probs=127.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++++..+...+.++.... .......++..+.+.+||+||+..+...+..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999998887777776543 3455677888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ......++...+++..+++++++||++|+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQ 148 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCC
Confidence 9999999999999888887653 34799999999999973 34456677788888889999999999985
No 97
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.1e-28 Score=167.84 Aligned_cols=147 Identities=35% Similarity=0.685 Sum_probs=124.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||+++|.+..+...+.++.. +........++..+.+++||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998777666665 344556677888899999999999988888888889999999999
Q ss_pred ECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------ccchHHHHHHHHHhCC-cEEEEeccCC
Q 031201 96 DVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKR----------AVPTSKGQALADEYGI-KFFETVMQRQ 163 (164)
Q Consensus 96 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (164)
|.++++++..... |+..+..... +.|+++|+||+|+.+... .+..+++.+++...++ +|+++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999988766 7777776655 799999999999964332 3457788889999998 9999999997
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 159 ~ 159 (171)
T cd00157 159 E 159 (171)
T ss_pred C
Confidence 4
No 98
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.6e-28 Score=169.78 Aligned_cols=148 Identities=33% Similarity=0.607 Sum_probs=124.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+.||+|+|++|+|||||++++..+.+.+.+.++....+ ...+..++..+.+.+||++|++.+......++..+++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 35999999999999999999998888777766655333 44667788888999999999988887777788999999999
Q ss_pred EECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC---------CCccchHHHHHHHHHhCC-cEEEEeccCC
Q 031201 95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES---------KRAVPTSKGQALADEYGI-KFFETVMQRQ 163 (164)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (164)
||++++++|+.+.. |+..+....+ +.|+++|+||+|+.+. .+.+..+++..+++..++ +||+|||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 99999999999974 8888877655 6999999999998532 344556788899999986 8999999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 159 ~ 159 (187)
T cd04129 159 E 159 (187)
T ss_pred C
Confidence 5
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=4.6e-29 Score=169.77 Aligned_cols=144 Identities=22% Similarity=0.416 Sum_probs=113.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|.+|+|||||++++..+.+.. +.++.+.++. .+.. ..+.+++||++|++.+..++..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 346899999999999999999998877653 5566665543 2333 4578999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH-----hCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~ 164 (164)
+|||++++.+++++..|+..+.. ....+.|++||+||+|+.+ .+..++++++.+. ..++++++||++|+
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 99999999999999887766644 2234789999999999963 2345566665432 23478999999985
No 100
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=2.2e-28 Score=178.59 Aligned_cols=145 Identities=23% Similarity=0.482 Sum_probs=125.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-------------CEEEEEEEeeCCCcc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQE 75 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~d~~g~~ 75 (164)
..+....+||+|+|..|+|||||+++|.++.+...+.++++.++..+.+.++ +..+.++|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 3456778999999999999999999999999988899999988877777764 256889999999999
Q ss_pred ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--Cc---
Q 031201 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKVLVGNKADMDESK--RA--- 138 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~--~~--- 138 (164)
.|..++..++++++++|+|||++++++|+.+..|++.+..... .++|++||+||+||.+.. +.
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999977531 258999999999996422 22
Q ss_pred cchHHHHHHHHHhCC
Q 031201 139 VPTSKGQALADEYGI 153 (164)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (164)
+..+++++|++++++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 367899999999986
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.9e-28 Score=170.86 Aligned_cols=147 Identities=29% Similarity=0.479 Sum_probs=122.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+++|.+|+|||||++++++..+...+.++.. +.....+.+.+..+.++|||++|+..+..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988877766654 3455667778888899999999999999888899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHH-HhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~ 164 (164)
++++++++.+..|+..+..... .+.|+++|+||+|+....+.+..++..+... ..+++++++||++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 149 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNE 149 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCC
Confidence 9999999999999888877654 4799999999999974445555555554443 446799999999984
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=1.9e-29 Score=171.04 Aligned_cols=140 Identities=21% Similarity=0.375 Sum_probs=115.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
.|+++|++|+|||||++++.+..+...+.++.+.+. ..++...+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888888888877543 2334456899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc----hHHHHHHHHHhCCcEEEEeccC
Q 031201 97 VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP----TSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
.+++.++..++.|+..+.... .+.|+++|+||+|+.+. +.+. ..++..++++.++++++|||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 999999999998888876544 47999999999999743 3221 1124667777788999999997
No 103
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=7.5e-28 Score=169.83 Aligned_cols=151 Identities=30% Similarity=0.588 Sum_probs=131.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44566799999999999999999999888888889999998888888878888999999999999999888888999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||+++..+|..+..|+..+..... +.|+++++||+|+.+ +... .+...+++..++.|+++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD--RQVK-ARQITFHRKKNLQYYDISAKSNY 154 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc--ccCC-HHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999998876654 799999999999863 2232 33456778888999999999874
No 104
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=4.5e-28 Score=166.41 Aligned_cols=147 Identities=35% Similarity=0.598 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
.||+++|++|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||+..+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888776766665333 455677788889999999999999988999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+++.++++.+..|+..+.+.. ..+.|+++|+||+|+. ..+....++...+++..+++++++||++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH-TQRQVSTEEGKELAESWGAAFLESSARENE 149 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh-hcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 9999999999999888776653 3578999999999997 345556667788888888999999999874
No 105
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2.6e-29 Score=171.15 Aligned_cols=149 Identities=35% Similarity=0.653 Sum_probs=135.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
...+|+.|+|..++|||+++-.+..+.|+..|.||.. +-+...+.++ +..+.+.+|||.|++.|..++...+.++|.+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999996 6777888995 9999999999999999999888889999999
Q ss_pred EEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEE
Q 031201 92 LLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFET 158 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~ 158 (164)
++||++.+++||+++.. |+.++..+++ ++|++|||+|.||.++ ...+..+++..++++.|+ .|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999876 9999999987 8999999999999742 236778899999999996 89999
Q ss_pred eccCC
Q 031201 159 VMQRQ 163 (164)
Q Consensus 159 Sa~~g 163 (164)
||++.
T Consensus 160 Sa~tq 164 (198)
T KOG0393|consen 160 SALTQ 164 (198)
T ss_pred hhhhh
Confidence 99975
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=5.5e-28 Score=166.27 Aligned_cols=141 Identities=22% Similarity=0.474 Sum_probs=109.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|.+++|||||++++..+.+. .+.++.+.++. .+.. ..+.+++||+||++.+..+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999887775 45677765543 3444 3478999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC--------cEEEEeccCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--------KFFETVMQRQ 163 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~g 163 (164)
+|||++++++++++..++..+... ...+.|++|++||+|+++. ...+ ++.+..++ .+++|||++|
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~g 163 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAA---EITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHH---HHHHHhCccccCCCceEEEeccCCCC
Confidence 999999999999888877666432 2247899999999999742 2223 33333333 3568999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 164 ~ 164 (181)
T PLN00223 164 E 164 (181)
T ss_pred C
Confidence 5
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.3e-28 Score=168.55 Aligned_cols=144 Identities=19% Similarity=0.391 Sum_probs=110.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|.+|+|||||++++..+.+. .+.+|.+.++. .+..+ .+.+.+||++|++.+..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 44699999999999999999999877764 45677765553 33333 478999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-----HhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~ 164 (164)
+|||+++++++++...|+..+... ...+.|++||+||+|+.+.. ..+++.+... ...+.++++||++|+
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 999999999999998887776442 23468999999999996322 2222222221 223357789999985
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=5.7e-28 Score=165.02 Aligned_cols=147 Identities=18% Similarity=0.365 Sum_probs=114.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+++|++|+|||||++++.+..+ ..+.++.+. ....+.+++ +.+.+||+||++.+..++..+++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3445668999999999999999999998754 344555553 334455553 78999999999999888999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-----HhCCcEEEEeccCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETVMQRQ 163 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g 163 (164)
++++|||++++.++.....|+..+... ...+.|+++|+||+|+.+. ...+++.++.+ ..+++++++||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 999999999999999988887776432 3357999999999999632 23445555543 34568999999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 161 ~ 161 (173)
T cd04154 161 E 161 (173)
T ss_pred c
Confidence 4
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=5.3e-28 Score=163.16 Aligned_cols=141 Identities=21% Similarity=0.450 Sum_probs=108.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|.+++|||||++++..+.+. .+.++.+.++. .+.. ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999887776 46677665442 3333 3578999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccchHHH-HHHH----HHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKG-QALA----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++++..++..+.. ....+.|++|++||+|+.+. ...+++ ..+. ..+++.++++||++|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~ 147 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence 99999999999887766643 22346899999999999632 122222 2221 1234467899999985
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.6e-27 Score=161.85 Aligned_cols=146 Identities=27% Similarity=0.420 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|.+|+|||||++++.++.++..+.++.. . ......+++..+.+.+||++|...+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999988765443322 2 2233455677789999999999888777778889999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-chHHHHHHHHHhC--CcEEEEeccCCC
Q 031201 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADEYG--IKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~g~ 164 (164)
|++++++++.+. .|...+..... +.|+++|+||+|+.+..... ..+++..+..+.+ .++++|||++|.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 999999999986 48787776654 79999999999997433211 1233334444433 389999999874
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=5e-28 Score=166.78 Aligned_cols=147 Identities=22% Similarity=0.379 Sum_probs=115.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+.+||+++|.+|+|||||++++..+.+... .++.+.+.....+.. ++..+.+.+||++|++.+..++..+++++|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999999887654 566665555555544 346689999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH------hCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------YGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ....++...+... .+++++++||++|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 156 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGE 156 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCC
Confidence 9999999999999888887775543 24789999999999863 2233444444321 13568999999985
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=1.5e-27 Score=162.43 Aligned_cols=140 Identities=20% Similarity=0.389 Sum_probs=112.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+++|.+++|||||++++.+..+.. +.+|.+.++. .+.. ..+.+++||+||+..+...+..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 5666665443 3333 34789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC------CcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG------IKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~g~ 164 (164)
++++++++++..|+..+.... ..+.|+++|+||+|+.+ ....++++++.+..+ +.+++|||++|+
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 999999999999888776432 24689999999999963 345566666654332 368899999984
No 113
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=9.4e-28 Score=165.29 Aligned_cols=144 Identities=22% Similarity=0.417 Sum_probs=108.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+..+||+++|++|+|||||++++..+.+.. +.+|.+.++. .+.. ..+.+++||++|++.+..++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 446899999999999999999998877754 5666665443 3333 4478999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (164)
+|||+++++++++...++..+.. ....+.|++||+||.|+.+.. ..+++.... +...+.++++||++|+
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM---STTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC---CHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 99999999999998886666533 222468999999999986321 222222211 1222357799999985
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.3e-27 Score=161.29 Aligned_cols=144 Identities=19% Similarity=0.372 Sum_probs=107.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC-CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+|+++|++|+|||||++++.+.. +...+.++.+.... .+.. ..+.+.+||+||+..+..++..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999875 35566676664332 2332 3478999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccchHHHHHHH--HHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALA--DEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~ 164 (164)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+........+...+. ....++++++||++|+
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence 9999999988888887775432 2479999999999997432211111111111 1123468999999985
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=2.4e-27 Score=161.14 Aligned_cols=142 Identities=22% Similarity=0.367 Sum_probs=110.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
+|+++|++|+|||||++++.+. +...+.++.+.+ ...+..+ .+.+++||+||+..+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999987 666777777754 3344554 3789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHH---HHHHHHHhC--CcEEEEeccCC
Q 031201 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSK---GQALADEYG--IKFFETVMQRQ 163 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~~Sa~~g 163 (164)
++++++++.+..|+..+..... .+.|+++|+||.|+++........+ ..+++++.+ +.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 9999999999998888865432 4789999999999974332221121 223343333 47888999997
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1e-26 Score=159.04 Aligned_cols=143 Identities=21% Similarity=0.347 Sum_probs=110.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|++|+|||||++++..+.+.. +.++.+.++ ..+..+ .+.+.+||+||++.+...+..+++++|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887765 456665443 334443 4789999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHH-HHHH----HHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKG-QALA----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~g~ 164 (164)
|+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++. +.+. +..++++++|||++|+
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 999999999988888776664432 246899999999999631 222332 2222 2345689999999984
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=3.3e-27 Score=159.10 Aligned_cols=141 Identities=25% Similarity=0.447 Sum_probs=107.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
+|+++|++|+|||||++++.+..+... .++.+.++ ..+..+ ..+.+.+||++|+..+...+..+++++|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999887643 45555433 333333 34789999999999999889999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHH------HHHHHhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQ------ALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++. .++.+.++++++|||++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL---TAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc---CHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 99999999988877776443 22479999999999996321 122222 2222344579999999985
No 118
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=1.7e-26 Score=150.57 Aligned_cols=149 Identities=20% Similarity=0.362 Sum_probs=119.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.+++.++|+++|..|+||||++++|.+.. +....|+.+ +..+++.+++ +++++||.+|+...++.|+.|+...|+
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 45669999999999999999999999976 455567666 5556666655 899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccchH---HHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS---KGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|+|.+++..+++....+..+.. ..-.+.|+++++||.|++.+-...... +...+++.+.++++.|||.||+
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 9999999999999888886666533 222468999999999997322222222 2455667788999999999995
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=5.9e-27 Score=157.74 Aligned_cols=140 Identities=25% Similarity=0.428 Sum_probs=103.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+++|++++|||||++++....+.. +.++.+.++ ..+.. ..+.+++||+||+..+..++..++++++++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998876653 455555443 23333 34789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (164)
++++.++.....++..+ ......+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGE 146 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCC
Confidence 99998887776655544 32222478999999999996322 122222211 1223579999999985
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=6.8e-26 Score=156.86 Aligned_cols=144 Identities=22% Similarity=0.362 Sum_probs=113.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
.+..||+++|++|+|||||++++.+..+. .+.++.+.. ...+.+++ +.+.+||+||+..+...+..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999987764 455555543 33455554 67899999999988888899999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH----------------hCCcE
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE----------------YGIKF 155 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 155 (164)
+|+|++++++++....++..+.... ..+.|+++++||+|+.+ .+..++++++... ..+++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 9999999999988888777775433 24699999999999863 3445666666543 22479
Q ss_pred EEEeccCCC
Q 031201 156 FETVMQRQI 164 (164)
Q Consensus 156 ~~~Sa~~g~ 164 (164)
++|||++|+
T Consensus 169 ~~~Sa~~~~ 177 (190)
T cd00879 169 FMCSVVKRQ 177 (190)
T ss_pred EEeEecCCC
Confidence 999999985
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=3.1e-26 Score=154.06 Aligned_cols=140 Identities=21% Similarity=0.410 Sum_probs=108.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
||+++|.+|+|||||++++++..+ ..+.++.+.+. ..+.++ .+.+.+||+||+..+...+..+++++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 699999999999999999999873 44455555433 334444 3689999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-----HhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~ 164 (164)
+++++++.....++..+.... ..+.|+++++||+|+.... ..++..+... ...++++++||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGD 146 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCC
Confidence 999999999988777765532 3579999999999986322 2233333322 234689999999985
No 122
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=1.3e-25 Score=153.72 Aligned_cols=126 Identities=40% Similarity=0.700 Sum_probs=113.5
Q ss_pred CCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhc
Q 031201 38 GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA 117 (164)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (164)
+.|.+.+.+|.+.++..+.+.+++..+.+.|||++|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45778889999999988888999999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 118 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 118 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
..+.|++||+||+||. ..+.+..+++..++..+++.|++|||++|+
T Consensus 83 ~~~~piilVgNK~DL~-~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~ 128 (176)
T PTZ00099 83 GKDVIIALVGNKTDLG-DLRKVTYEEGMQKAQEYNTMFHETSAKAGH 128 (176)
T ss_pred CCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 5578999999999997 455677888999999999999999999985
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=6.7e-26 Score=153.71 Aligned_cols=141 Identities=21% Similarity=0.405 Sum_probs=107.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
+|+++|++|+|||||++++.+... ...+.++.+.++ ..+.++ ...+.+||+||++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999976432 223444544433 334444 3789999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH-------hCCcEEEEeccC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGIKFFETVMQR 162 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 162 (164)
+++|+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++..++... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999999988888877765532 347999999999998632 233444444333 245899999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 154 g~ 155 (167)
T cd04160 154 GT 155 (167)
T ss_pred Cc
Confidence 85
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=1.2e-25 Score=153.91 Aligned_cols=146 Identities=26% Similarity=0.488 Sum_probs=114.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..+..+||+++|+.||||||+++++....... ..||.+. ....+.+++ +.+.+||.+|+..++..|+.++.++|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~--~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF--NIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE--EEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc--ccceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 34789999999999999999999998865443 5666664 445566666 679999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH------HhCCcEEEEeccCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETVMQRQ 163 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g 163 (164)
+|+|+|.++++.+.+....+..+... .-.+.|+++++||+|+++. ...+++..... ...+.++.|||++|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999999998888877666543 2247999999999998743 33344443332 23456899999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 162 ~ 162 (175)
T PF00025_consen 162 E 162 (175)
T ss_dssp B
T ss_pred c
Confidence 5
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=3.2e-25 Score=152.91 Aligned_cols=144 Identities=19% Similarity=0.294 Sum_probs=108.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+..++|+++|++|+|||||++++.+..+.. +.++.+.+. ..+.+++ +.+.+||+||+..+...+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999876543 344444332 3344443 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH------------hCCcEEEEe
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETV 159 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 159 (164)
+|+|+++++++.....++..+... ...+.|+++|+||+|++. .+..+++.+.... ....+++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 999999999998888877666443 224789999999999863 2334444333211 233699999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 167 a~~~~ 171 (184)
T smart00178 167 VVRRM 171 (184)
T ss_pred cccCC
Confidence 99885
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=3.4e-25 Score=148.34 Aligned_cols=141 Identities=21% Similarity=0.468 Sum_probs=109.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
.|+++|++|+|||||++++.+..+...+.++.+.+.. .+...+ +.+.+||+||+..+...+..++.++|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3899999999999999999999998888888775554 334433 789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEeccCCC
Q 031201 97 VTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (164)
+++++++.....++..+... ...+.|+++|+||+|+.+. .. .++..... ...+++++++||++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA-LS--VDELIEQMNLKSITDREVSCYSISCKEKT 147 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-cC--HHHHHHHhCcccccCCceEEEEEEeccCC
Confidence 99999998887776666432 2247899999999998632 11 11221111 1234689999999984
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=3.2e-24 Score=143.18 Aligned_cols=148 Identities=33% Similarity=0.474 Sum_probs=119.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|.+|+|||||++++....++..+.++.+.+.....+..++..+.+.+||+||+..+..++..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999988778888888777777777777778999999999999988888889999999999
Q ss_pred EECCCh-HHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|.... .++.... .+...+......+.|+++++||.|+.... ........+......+++++||++|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGK 150 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCC
Confidence 998876 6666655 56666665554478999999999996322 33444455555556699999999874
No 128
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=4e-27 Score=155.88 Aligned_cols=151 Identities=34% Similarity=0.648 Sum_probs=142.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
.+-+..+|++|+|..++||||+++++|.+-|...+..+++.++....+.++++.+.+.+||++|++++..+...|++++.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 45578899999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
+.++||+-+++.||+.+..|++.+..... .+|.++|-||+||. +..++..++++.+++..++.+|.+|++.
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlv-eds~~~~~evE~lak~l~~RlyRtSvke 165 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLV-EDSQMDKGEVEGLAKKLHKRLYRTSVKE 165 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhh-HhhhcchHHHHHHHHHhhhhhhhhhhhh
Confidence 99999999999999999999999987766 79999999999998 6778889999999999999999999875
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=2.9e-24 Score=147.21 Aligned_cols=141 Identities=23% Similarity=0.337 Sum_probs=101.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC-------CCCcccc------eeeeEEEEEEEE--E---CCEEEEEEEeeCCCccccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS-------FTTSFIT------TIGIDFKIRTIE--L---DGKRIKLQIWDTAGQERFR 78 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~l~d~~g~~~~~ 78 (164)
+|+++|.+++|||||+++|++.. +...+.+ +.+.++....+. + ++..+.+.|||+||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998742 1111211 112233332222 2 5667899999999999999
Q ss_pred hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC---cE
Q 031201 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---KF 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 155 (164)
..+..+++++|++|+|||+++..++.....|.... ..++|+++|+||+|+.+. . ..+...++++..++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSA-D--PERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcC-C--HHHHHHHHHHHhCCCcccE
Confidence 99999999999999999999876666655554332 236889999999998632 1 12234566666676 48
Q ss_pred EEEeccCCC
Q 031201 156 FETVMQRQI 164 (164)
Q Consensus 156 ~~~Sa~~g~ 164 (164)
+++||++|+
T Consensus 155 ~~~Sa~~g~ 163 (179)
T cd01890 155 ILVSAKTGL 163 (179)
T ss_pred EEeeccCCC
Confidence 999999985
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=1e-24 Score=151.63 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=102.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------cceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~ 81 (164)
.+|+++|.+++|||||+++|++ ..+...+ ..+.+.++......++...+.+.+||+||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4444332 1223444444444444456789999999999999999
Q ss_pred hhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-------HhCCc
Q 031201 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGIK 154 (164)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~ 154 (164)
..+++++|++++|||+++.. +.....++..+.. .+.|+++|+||+|+.+.......++..++.. +.+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998731 2222233333322 3688999999999964322223444555542 23679
Q ss_pred EEEEeccCCC
Q 031201 155 FFETVMQRQI 164 (164)
Q Consensus 155 ~~~~Sa~~g~ 164 (164)
++++||++|+
T Consensus 159 iv~~Sa~~g~ 168 (194)
T cd01891 159 VLYASAKNGW 168 (194)
T ss_pred EEEeehhccc
Confidence 9999999984
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=148.29 Aligned_cols=146 Identities=39% Similarity=0.585 Sum_probs=119.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||+++|.+..+...+.++.+..+-.......+..+.+.+||++|++.+..++..+..+++++++||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 99999999999999999999999999999988877676666666655789999999999999999999999999999999
Q ss_pred ECCChHH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHh---CCcEEEEec
Q 031201 96 DVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEY---GIKFFETVM 160 (164)
Q Consensus 96 d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~---~~~~~~~Sa 160 (164)
|..+..+ ++....|...+....+...|+++|+||+|+.... +..........+... ...+++||+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9999554 5555569989888876679999999999997443 233334334443333 234899999
Q ss_pred c
Q 031201 161 Q 161 (164)
Q Consensus 161 ~ 161 (164)
+
T Consensus 166 ~ 166 (219)
T COG1100 166 K 166 (219)
T ss_pred c
Confidence 8
No 132
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=2.4e-24 Score=138.48 Aligned_cols=114 Identities=37% Similarity=0.667 Sum_probs=88.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC--CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
||+|+|++|+|||||+++|++..+. .......+.++.............+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12222333345555666677777799999999998888777789999999999
Q ss_pred EECCChHHHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 031201 95 YDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 131 (164)
||++++++++.+..+ +..+..... ++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 999999999988655 455554444 699999999998
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=5.6e-24 Score=143.55 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=96.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC---CCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+.|+++|.+|+|||||+++|.+. .+...+.++.+.+.....+.+.+ ...+.+||+||++.+......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999974 23333333334444444445542 358999999999988776677788999999
Q ss_pred EEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccchHHHHHHHHH---hCCcEEEEeccCCC
Q 031201 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADE---YGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~ 164 (164)
+|+|+++ +++.+.+. .+... . ..|+++++||+|+.+.. .....++..++.+. .+.+++++||++|+
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 9999987 44443332 12211 1 24899999999996321 11223344444444 46799999999874
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=9.3e-24 Score=143.30 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=95.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc---------hhhhhhcc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYYR 86 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~---------~~~~~~~~ 86 (164)
.+|+++|.+|+|||||+++|.+..+.....+..+.+.....+.. ..+.+.|||+||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999998765332221122222222222 34789999999973211 00111112
Q ss_pred cccEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
..|++|+|+|++++.+ ++....|+..+..... +.|+++|+||+|+.+ ... ..+.+++.+..+.++++|||++|+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~-~~~--~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK-NKPVIVVLNKIDLLT-FED--LSEIEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC-cCCeEEEEEccccCc-hhh--HHHHHHhhhhccCceEEEEecccC
Confidence 3689999999998765 3555667777765543 789999999999963 222 222556666667899999999985
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=8.9e-24 Score=143.58 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=99.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc----ccchhhhhh---ccccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAY---YRGAM 89 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~----~~~~~~~~~---~~~~~ 89 (164)
+|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+||+||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999975542211111111111122333332 479999999963 222233333 34699
Q ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh-CCcEEEEeccCCC
Q 031201 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~ 164 (164)
++++|+|++++ ++++.+..|.+.+....+ .+.|+++|+||+|+.+. .. ..+...++.... +.+++++||++|.
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE-EE-LFELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc-hh-hHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 99999999999 799999899988877643 36899999999999632 22 234455566663 7799999999874
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=1.1e-23 Score=143.64 Aligned_cols=142 Identities=20% Similarity=0.395 Sum_probs=106.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....++|+++|++|+|||||++++.+..+.. +.++.+.+ ...+..++ ..+.+||++|+..+...+..+++.+|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 3458999999999999999999999976543 34454433 33445554 6799999999988888888899999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC--------cEEEEeccC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--------KFFETVMQR 162 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~ 162 (164)
++|+|+++..++.....++..+.. ....++|+++++||+|+.+.. . ..++.+..++ +++++||++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~---~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---P---AEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---C---HHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 999999999888888776666543 233479999999999986321 1 2223333332 478999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 160 ~~ 161 (173)
T cd04155 160 GE 161 (173)
T ss_pred CC
Confidence 85
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=1e-23 Score=147.53 Aligned_cols=145 Identities=18% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc---------cchhhh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITT 82 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~---------~~~~~~ 82 (164)
.+..++|+|+|++|+|||||++++++..+.....+..+.+.....+.+++. ..+.+||+||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 355789999999999999999999997654332222222333334444442 3799999999632 11111
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
..+.++|++++|+|++++.++..+..|.+.+......+.|+++|+||+|+.+... . ..+....+.+++++||++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-~-----~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE-L-----EERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH-H-----HHHhhcCCCceEEEEcCC
Confidence 2356899999999999988888877777777665555789999999999963221 1 134455567999999998
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|.
T Consensus 190 ~~ 191 (204)
T cd01878 190 GE 191 (204)
T ss_pred CC
Confidence 74
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=7.3e-24 Score=140.24 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=90.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc-----ccchhhhhhcccccEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 91 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~-----~~~~~~~~~~~~~~~~ 91 (164)
||+++|++|+|||||+++|.+..+. +.++.+.++ . -.+||+||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 233332221 1 1689999973 2333333 47899999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
|+|||++++.++.. ..|.+.+ ..|+++|+||+|+.+ .....++++++++..+. +++++||++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQ 131 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCC
Confidence 99999999988754 2343322 238999999999963 33455667888888887 89999999984
No 139
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=3.6e-23 Score=153.88 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=103.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-------cchhhhhhcc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYR 86 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-------~~~~~~~~~~ 86 (164)
....|+|+|.|++|||||+++|.+........+..+.....-.+.+.+ ...+.+||+||... ....+...++
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 346799999999999999999998543222212222222223333422 24689999999632 1122233556
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.++++|+|+|++++++++.+..|.+++..+.+ .+.|+++|+||+|+.+ ......++...+.+..+.+++++||++|+
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~-~~~~~~~~~~~~~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD-EEEEREKRAALELAALGGPVFLISAVTGE 314 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC-chhHHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 89999999999988889999999999877654 3689999999999963 23233334555556667899999999885
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=1.5e-22 Score=133.82 Aligned_cols=144 Identities=49% Similarity=0.856 Sum_probs=111.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECC
Q 031201 20 LIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (164)
Q Consensus 20 v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (164)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 45555555 6666677777777889999999999888887888899999999999999
Q ss_pred ChHHHHHHHHH-HHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 99 DESSFNNIRNW-IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 99 ~~~s~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++.++..+..| ...+......+.|+++++||+|+..............+......+++++|++.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 99998888887 3333334445899999999999863322221111445556667899999999873
No 141
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5e-23 Score=137.36 Aligned_cols=150 Identities=21% Similarity=0.391 Sum_probs=117.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
-...+..+|+++|--++||||++.+|--..+... .||++. ....+.+. .+.+++||.+|++.++.+|..|+.+.+
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGf--nVE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGF--NVETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccc--ceeEEEEc--ceEEEEEecCCCcccccchhhhccCCc
Confidence 4567889999999999999999999988777666 787774 45555554 489999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHH--hCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE--YGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~ 164 (164)
++|+|+|.++++.+.+.+..+..+..... .+.|+++.+||.|++++-..........+..- +..-+..|+|.+|+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 99999999999999998886666655443 68999999999999854442222222222222 23467888888875
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=2.3e-22 Score=136.34 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=96.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
.|+|+|.+|+|||||+++|....+.....+..+.+.....+..+ +....+.+||+||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999987766544444434433444443 23568999999999988888888899999999999
Q ss_pred ECCCh---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH------HhCCcEEEEeccCCC
Q 031201 96 DVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~ 164 (164)
|.++. +++..+ ..+.. .+.|+++|+||+|+.+.......++..++.. ..+++++++||++|+
T Consensus 82 d~~~~~~~~~~~~~----~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 82 AADDGVMPQTIEAI----KLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred ECCCCccHHHHHHH----HHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 99874 333222 22222 3689999999999863221111111222211 123689999999884
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=2.9e-22 Score=134.44 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=97.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch------hhhhhcc--cccEE
Q 031201 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR--GAMGI 91 (164)
Q Consensus 20 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~------~~~~~~~--~~~~~ 91 (164)
|+|.+|+|||||++++.+..+.....+..+.+.....+..++ ..+.+||+||...+.. ++..++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999865554445555555555666665 5799999999876553 3455554 89999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|..++++.. .+...+.. .+.|+++|+||+|+.+. .... .....+.+..+++++++||++|+
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEK-RGIK-IDLDKLSELLGVPVVPTSARKGE 143 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhccc-ccch-hhHHHHHHhhCCCeEEEEccCCC
Confidence 9999999865532 23333332 26899999999999632 2222 23567778889999999999874
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=4.2e-22 Score=149.25 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=100.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc---------ccchhhhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~---------~~~~~~~~ 83 (164)
...++|+++|.+|+|||||+|+|++........+..+.+.....+.+++. ..+.||||+|.. .|...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 45589999999999999999999997654333233333445556666432 479999999962 222222 2
Q ss_pred hcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
.+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.+. . +.... .....+++++||++|
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-~-----~v~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-P-----RIERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-H-----hHHHH-HhCCCCEEEEEccCC
Confidence 4778999999999999988887777776666654457899999999999631 1 11111 122347899999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 338 ~ 338 (351)
T TIGR03156 338 E 338 (351)
T ss_pred C
Confidence 4
No 145
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=2.9e-22 Score=137.57 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=98.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc----------ccch
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRT 79 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~----------~~~~ 79 (164)
.++...++|+|+|.+|+|||||++++++..+.....++.+.+.....+..++ .+.+||+||.. .+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3457888999999999999999999999765444444444333333333343 69999999942 2333
Q ss_pred hhhhhcc---cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccchHHHHHHHHHhC--C
Q 031201 80 ITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYG--I 153 (164)
Q Consensus 80 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~--~ 153 (164)
+...+++ .++++++|+|.+++-+..+. .++..+.. .+.|+++++||+|+.+. ......+++++..+..+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 3344544 45799999999875443333 22233322 26899999999998632 22334455666666654 4
Q ss_pred cEEEEeccCCC
Q 031201 154 KFFETVMQRQI 164 (164)
Q Consensus 154 ~~~~~Sa~~g~ 164 (164)
+++++||++|+
T Consensus 166 ~v~~~Sa~~g~ 176 (179)
T TIGR03598 166 SVQLFSSLKKT 176 (179)
T ss_pred ceEEEECCCCC
Confidence 89999999985
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.89 E-value=1.7e-22 Score=141.12 Aligned_cols=139 Identities=16% Similarity=0.195 Sum_probs=91.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC-----------ccccchh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTI 80 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g-----------~~~~~~~ 80 (164)
+...++|+++|.+|+|||||+++|.+..+.....++.+ .....+... .+.+||+|| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 34568999999999999999999999876654444333 333333332 589999999 4556665
Q ss_pred hhhhcc----cccEEEEEEECCChHH----HH------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHH
Q 031201 81 TTAYYR----GAMGILLVYDVTDESS----FN------NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA 146 (164)
Q Consensus 81 ~~~~~~----~~~~~i~v~d~~~~~s----~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (164)
+..++. .++++++|+|..+... |. .-..++..+.. .++|+++|+||+|+.+.. .+...+
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~----~~~~~~ 152 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR----DEVLDE 152 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH----HHHHHH
Confidence 555553 4578888888764221 10 00112222222 378999999999996322 234566
Q ss_pred HHHHhCC---------cEEEEeccCC
Q 031201 147 LADEYGI---------KFFETVMQRQ 163 (164)
Q Consensus 147 ~~~~~~~---------~~~~~Sa~~g 163 (164)
+++..++ +++++||++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g 178 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG 178 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC
Confidence 6666665 4899999986
No 147
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=2.1e-22 Score=133.99 Aligned_cols=139 Identities=17% Similarity=0.258 Sum_probs=98.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc------hhhhhhc--cc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYY--RG 87 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~------~~~~~~~--~~ 87 (164)
++|+++|.|++|||||+|+|++........|..+.+.....+...+ ..+.++|+||..... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999886666667777777666777766 689999999953322 1223333 58
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.|++|+|.|+++.+.-..+ ..++.+. ++|+++++||+|.. ....... ....+++..++|++.+||++|+
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~---g~P~vvvlN~~D~a-~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLEL---GIPVVVVLNKMDEA-ERKGIEI-DAEKLSERLGVPVIPVSARTGE 147 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHHT---TSSEEEEEETHHHH-HHTTEEE--HHHHHHHHTS-EEEEBTTTTB
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHHc---CCCEEEEEeCHHHH-HHcCCEE-CHHHHHHHhCCCEEEEEeCCCc
Confidence 9999999999975432222 2333332 79999999999987 3333333 3788889999999999999874
No 148
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=8.3e-22 Score=146.49 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=102.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc----hhhh---hhcc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TITT---AYYR 86 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~----~~~~---~~~~ 86 (164)
....|+|+|.+++|||||+++|.+........+..+.......+.+++ ..++.|||+||..... .+.. ..++
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 346899999999999999999998653221111112222222334433 2578999999964221 2222 3355
Q ss_pred cccEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEecc
Q 031201 87 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 87 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
.++++++|+|+++. ++++.+..|.+++..+.. .+.|+++|+||+|+.+. . ...+..+++.+..+.+++++||+
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~-~~~~~~~~l~~~~~~~vi~iSAk 312 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-E-ELAELLKELKKALGKPVFPISAL 312 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-H-HHHHHHHHHHHHcCCcEEEEEcc
Confidence 79999999999986 678888888888766543 36899999999999633 2 23344566777778899999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 313 tg~ 315 (329)
T TIGR02729 313 TGE 315 (329)
T ss_pred CCc
Confidence 874
No 149
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=9.4e-22 Score=151.21 Aligned_cols=136 Identities=21% Similarity=0.235 Sum_probs=101.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC--CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh--------hh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TT 82 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~ 82 (164)
...++|+++|++|+|||||+|+|++... ...+ +..+.++....+.+++ ..+.+|||||...+... ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 4568999999999999999999998653 3333 4444566666777776 56799999997654432 23
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
.+++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+.+. +...+++..+++++++||++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec
Confidence 567899999999999998877654 5554432 36899999999999632 12455677788999999997
Q ss_pred C
Q 031201 163 Q 163 (164)
Q Consensus 163 g 163 (164)
+
T Consensus 346 ~ 346 (442)
T TIGR00450 346 L 346 (442)
T ss_pred C
Confidence 3
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=1.6e-21 Score=133.02 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=94.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----cchh---hhhhcccccEEE
Q 031201 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYRGAMGIL 92 (164)
Q Consensus 20 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~---~~~~~~~~~~~i 92 (164)
++|++|+|||||+++|.+........+..+.+.....+.+++ ...+.+||+||... ...+ ....++++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999764211111112222223344441 35789999999632 1222 233467899999
Q ss_pred EEEECCCh------HHHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 93 LVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 93 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
+|+|+.++ .+++++..|...+..... .+.|+++|+||+|+.. ................+.+++++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD-AEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc-hhHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999987 578888777777765432 3689999999999963 222222212344455567899999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 159 a~~~~ 163 (176)
T cd01881 159 AKTEE 163 (176)
T ss_pred hhhhc
Confidence 99874
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=2.9e-21 Score=140.54 Aligned_cols=140 Identities=17% Similarity=0.098 Sum_probs=92.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-h-------hhhhhcccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-T-------ITTAYYRGA 88 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-~-------~~~~~~~~~ 88 (164)
+|+++|.+|+|||||+|+|++..+........++......+...+. .++.||||||..... . .....+.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998754321111111112223332222 479999999965321 1 123457899
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+ .....+...++....+. +++++||++|+
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGD 150 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 9999999999876653 334444433 2689999999999962 22223445555555555 89999999885
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=5.4e-21 Score=127.90 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=92.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh--------hhhhcc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR 86 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~~~~ 86 (164)
++|+++|++|+|||||++++++..... ...+..+.+.....+..++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876422 2222223333334444443 57899999997554321 234567
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||++|.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGE 143 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCC
Confidence 8999999999998777655544333 337899999999999743222 334456799999999874
No 153
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=2.4e-21 Score=153.61 Aligned_cols=144 Identities=21% Similarity=0.312 Sum_probs=104.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCC-------CCCccc------ceeeeEEEEEEEEE-----CCEEEEEEEeeCCCcc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFI------TTIGIDFKIRTIEL-----DGKRIKLQIWDTAGQE 75 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~l~d~~g~~ 75 (164)
+.-+|+++|+.++|||||+++|+... +...+. ...++++....+.+ ++..+.++||||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 45689999999999999999998742 111221 12244444433322 4667899999999999
Q ss_pred ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC--
Q 031201 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-- 153 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 153 (164)
.|...+..++..+|++|+|+|+++..+.+....|...+. .++|+++|+||+|+.+.. ..+...++.+..++
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDA 154 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCc
Confidence 999999999999999999999998666665555544432 268899999999996322 12223455566666
Q ss_pred -cEEEEeccCCC
Q 031201 154 -KFFETVMQRQI 164 (164)
Q Consensus 154 -~~~~~Sa~~g~ 164 (164)
.++++||++|+
T Consensus 155 ~~vi~vSAktG~ 166 (595)
T TIGR01393 155 SEAILASAKTGI 166 (595)
T ss_pred ceEEEeeccCCC
Confidence 48999999985
No 154
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.87 E-value=2.5e-22 Score=129.03 Aligned_cols=146 Identities=23% Similarity=0.452 Sum_probs=112.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+.+.++|-.++|||||+|.+..+++.+...|+.++.. +.++ ...+.+.+||.||+..|+++|..|.+.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~t--kgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEec--cCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 467899999999999999999999999998888888443 4443 455899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHH--HHHhCCcEEEEeccCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQAL--ADEYGIKFFETVMQRQ 163 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~g 163 (164)
|+|+.+++.+.-.+..+..+..... .++|++++|||.|++++-.....-+...+ .....+-.|.+|+|..
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~ 167 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEK 167 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence 9999999988877776655544333 57999999999999864333222211111 2223356788888854
No 155
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=2.7e-21 Score=134.17 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC----CCC---CcccceeeeEEEEEEEEEC------------CEEEEEEEeeCCCccc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG----SFT---TSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER 76 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~d~~g~~~ 76 (164)
++|+++|++++|||||+++|++. .+. ....+..+.+.....+.+. +..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 111 1112222222322223322 3357899999999876
Q ss_pred cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccchHHHHHH-HH-----
Q 031201 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQAL-AD----- 149 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~-~~----- 149 (164)
+..........+|++++|+|+.+.........+. .. .. .+.|+++++||+|+... ......++..+. ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999998743332222221 11 11 15789999999998632 222222333222 11
Q ss_pred -HhCCcEEEEeccCCC
Q 031201 150 -EYGIKFFETVMQRQI 164 (164)
Q Consensus 150 -~~~~~~~~~Sa~~g~ 164 (164)
..+++++++||++|+
T Consensus 157 ~~~~~~vi~iSa~~g~ 172 (192)
T cd01889 157 RFKNSPIIPVSAKPGG 172 (192)
T ss_pred CcCCCCEEEEeccCCC
Confidence 235799999999985
No 156
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=126.97 Aligned_cols=152 Identities=23% Similarity=0.500 Sum_probs=131.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
...-.+||.++|.+..|||||+-.+.++.+.+.+..+.++++..+++.+.+..+.+.+||.+|++++..+.+..-+++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 45567899999999999999999999999989999999999999999999999999999999999999999988889999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC----CCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD----ESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
++++||++++.++..+..|+.+.+..+..-+| ++||||.|+. .+.+.....+++.+++-.++++|+||+..+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~s 171 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHS 171 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccc
Confidence 99999999999999999999999888775555 6789999963 122222344578888888999999998764
No 157
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=8.6e-21 Score=149.97 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=103.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
..+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+..++.. .+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3466899999999999999999999988776655555555555556554432 789999999999999998889999999
Q ss_pred EEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC---------CcEEEEe
Q 031201 92 LLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG---------IKFFETV 159 (164)
Q Consensus 92 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~S 159 (164)
|+|+|+.+ +++.+.+ .. ....++|+++++||+|+++. ..+++.+..+..+ .+++++|
T Consensus 163 ILVVda~dgv~~qT~e~i----~~---~~~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI----SH---AKAANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred EEEEECCCCCCHhHHHHH----HH---HHHcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 99999886 3343322 11 12237899999999999632 2233333333332 4799999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 232 AktGe 236 (587)
T TIGR00487 232 ALTGD 236 (587)
T ss_pred CCCCC
Confidence 99985
No 158
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=4.8e-21 Score=133.97 Aligned_cols=117 Identities=19% Similarity=0.396 Sum_probs=88.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc-cEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA-MGILLVY 95 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~-~~~i~v~ 95 (164)
+|+++|++|+|||+|+++|....+.....++ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998876665443 2222222222123446899999999999998888889998 9999999
Q ss_pred ECCCh-HHHHHHHHHHHHHHH---hcCCCCcEEEEEeCCCCCC
Q 031201 96 DVTDE-SSFNNIRNWIRNIEQ---HASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 96 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~ 134 (164)
|+.+. .++..+..++..+.. ....++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 677777776554432 2224799999999999863
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=5.1e-21 Score=131.88 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=97.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccce----------------eeeEEEEEEEEECCEEEEEEEeeCCCccccchh
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITT----------------IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~ 80 (164)
+|+|+|.+|+|||||+++|++.......... .+.......+... ...+.|||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 5899999999999999999987665433211 1122222222332 468999999999888888
Q ss_pred hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-CCCccchHHHHHHHHH---------
Q 031201 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-SKRAVPTSKGQALADE--------- 150 (164)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~--------- 150 (164)
+..++..+|++++|+|++++.+... ..++..+.. .+.|+++++||+|+.. .......++..+..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888999999999999987654322 233333332 3789999999999974 2222223334444433
Q ss_pred -----hCCcEEEEeccCCC
Q 031201 151 -----YGIKFFETVMQRQI 164 (164)
Q Consensus 151 -----~~~~~~~~Sa~~g~ 164 (164)
...+++++||++|.
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~ 173 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGI 173 (189)
T ss_pred hcccCCcceEEEEecccCc
Confidence 34689999999874
No 160
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.1e-20 Score=149.81 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC---CCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+.|+++|..++|||||+++|++. .+++.+.++.+++.....+..++ ..+.|||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999973 34455556666666655666666 78999999999999888888889999999
Q ss_pred EEEECCC---hHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccchHHHHHHHHHh----CCcEEEEeccCC
Q 031201 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEY----GIKFFETVMQRQ 163 (164)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~g 163 (164)
+|+|+++ +++++++. .+... ++| +++|+||+|+.+... ....+++.++.+.. +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 55555442 22221 566 999999999974221 11234456666554 579999999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 152 ~ 152 (581)
T TIGR00475 152 Q 152 (581)
T ss_pred C
Confidence 5
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=5.9e-21 Score=148.56 Aligned_cols=146 Identities=22% Similarity=0.192 Sum_probs=98.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCc----------cccchhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTIT 81 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~----------~~~~~~~ 81 (164)
...++|+++|.+++|||||+|+|++..+. ....+..+.+.....+..++. .+.|||+||. +.+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 35699999999999999999999997642 233344444455556666664 4679999994 2222222
Q ss_pred -hhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccchHHHH-HHHHHhCCcEEEE
Q 031201 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQ-ALADEYGIKFFET 158 (164)
Q Consensus 82 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 158 (164)
..+++++|++|+|+|+++..++..+. ++..+.. .+.|+++|+||+|+.+... ....+++. .+.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23578999999999999887776663 3333332 3789999999999963221 11111222 2222234799999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|.
T Consensus 363 SAk~g~ 368 (472)
T PRK03003 363 SAKTGR 368 (472)
T ss_pred ECCCCC
Confidence 999984
No 162
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=1.1e-20 Score=141.25 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC---cccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-cchhh------
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT------ 81 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~------ 81 (164)
.++.++|+++|.+|+|||||+|+|.+..+.. ...+|. +.....+..++ .++.||||||... +..+.
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence 3567799999999999999999999977642 222222 22233445554 4789999999743 22221
Q ss_pred -hhhcccccEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC--CcEEE
Q 031201 82 -TAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFE 157 (164)
Q Consensus 82 -~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (164)
...+.++|++++|+|..+ ++..... |+..+... +.|.++|+||+|+.+. ...++.+++...+ .++++
T Consensus 125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFP 195 (339)
T ss_pred HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEE
Confidence 124679999999999764 4444433 44444432 4567889999999632 2345666665554 58999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
+||++|+
T Consensus 196 iSAktg~ 202 (339)
T PRK15494 196 ISALSGK 202 (339)
T ss_pred EeccCcc
Confidence 9999884
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=3.4e-20 Score=141.39 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=99.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----cchhhhhh---ccc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRG 87 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~~~~~---~~~ 87 (164)
...|+++|.+++|||||+++|++........+..+.+.....+.+++ ...+.+||+||... ...+...+ ++.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 34899999999999999999998653222112222222222233331 24799999999532 22233333 557
Q ss_pred ccEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 88 AMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 88 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
++++|+|+|+++. +.++....|.+.+..+.+ .+.|++||+||+|+.+. .+..+++.+..+.+++++||++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-----~e~l~~l~~~l~~~i~~iSA~t 311 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-----EENLEEFKEKLGPKVFPISALT 311 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-----HHHHHHHHHHhCCcEEEEeCCC
Confidence 9999999999864 677777788888877644 36899999999998521 2445667777778999999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 312 ge 313 (424)
T PRK12297 312 GQ 313 (424)
T ss_pred CC
Confidence 85
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=8.2e-21 Score=146.64 Aligned_cols=134 Identities=24% Similarity=0.224 Sum_probs=96.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh--------hhhh
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~~ 84 (164)
..++|+++|.+|+|||||+|+|++... .....+..+.++....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 348999999999999999999998764 222333334455556666666 56899999997654432 2236
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+. .... ...+.+++++||++|+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~-~~~~--------~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE-IDLE--------EENGKPVIRISAKTGE 356 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc-chhh--------hccCCceEEEEeeCCC
Confidence 788999999999999877765544433 336899999999999632 1111 3445689999999984
No 165
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.9e-21 Score=128.47 Aligned_cols=147 Identities=27% Similarity=0.568 Sum_probs=128.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...++++++|..|.||||+.++++.+.|...+.++.+.+.....+..+...+++..||+.|++.+-.+...++-...+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 56899999999999999999999999999999999998776665555555689999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
+.||+.+.-++..+..|...+...+. ++|++++|||.|..+ ++ .......+.+..++.||+.||+++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~--r~-~k~k~v~~~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKA--RK-VKAKPVSFHRKKNLQYYEISAKSN 154 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccc--cc-cccccceeeecccceeEEeecccc
Confidence 99999999999999999999988877 799999999999852 22 233355667778899999999975
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=2e-20 Score=143.27 Aligned_cols=144 Identities=22% Similarity=0.184 Sum_probs=97.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcccc--chhhh------hhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AYY 85 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~--~~~~~------~~~ 85 (164)
...+|+++|.+|+|||||+|+|++........+..+.+.....+...+.. .+.+|||+|.... .+++. ..+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 34689999999999999999999876543333333344444455555422 6789999997331 22222 235
Q ss_pred ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCc-EEEEeccCCC
Q 031201 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETVMQRQI 164 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~ 164 (164)
.++|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.+. .. ... .. ...+.+ ++.+||++|+
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~-~~---~~~-~~-~~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD-FE---PRI-DR-DEENKPIRVWLSAQTGA 348 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc-hh---HHH-HH-HhcCCCceEEEeCCCCC
Confidence 78999999999999988877765555555544447899999999998632 11 111 11 124555 5889999985
No 167
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=2.4e-20 Score=150.85 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=103.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
..+...|+|+|..++|||||+++|.+..+.....+..+.+.....+..++ ..+.||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 46778999999999999999999998777655555555555555556655 5799999999999999999889999999
Q ss_pred EEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH---HHHHHhC--CcEEEEeccCC
Q 031201 92 LLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ---ALADEYG--IKFFETVMQRQ 163 (164)
Q Consensus 92 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~g 163 (164)
|+|+|+.+ +++.+.+ ......++|+++++||+|+.+........+.. .++..++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i-------~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-------NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH-------HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 99999987 3444332 11222378999999999996422111111111 1223333 68999999998
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 438 ~ 438 (787)
T PRK05306 438 E 438 (787)
T ss_pred C
Confidence 5
No 168
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=1.7e-20 Score=150.53 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=101.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEE--EEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
.....+|+|+|..++|||||+++|....+.....+..+.+. +...+..++....+.|||+||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 35668999999999999999999998777654444333332 2223333445579999999999999999999999999
Q ss_pred EEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHH---HHHHhC--CcEEEEecc
Q 031201 90 GILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA---LADEYG--IKFFETVMQ 161 (164)
Q Consensus 90 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~ 161 (164)
++|+|+|+.+ +++++.+. .+ ...++|+++++||+|+.+.......++... +...++ ++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E~I~----~~---k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN----YI---QAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH----HH---HhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 9999999987 34443332 12 223789999999999974221111111111 122333 689999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 394 tG~ 396 (742)
T CHL00189 394 QGT 396 (742)
T ss_pred CCC
Confidence 985
No 169
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=117.72 Aligned_cols=148 Identities=27% Similarity=0.418 Sum_probs=120.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC--CcccceeeeEEEEEEEEE-CCEEEEEEEeeCCCcccc-chhhhhhcccc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGA 88 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~-~~~~~~~~~~~ 88 (164)
....|++|+|..++|||++++.+...... ..+.+|++ +++...+.. .+.+-++.|+||.|-..+ ..+-..|+.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 45689999999999999999998765443 35566665 455566544 355568999999997766 45567788899
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
|++++|||..+++||+.+..+.+.+..... ..+|+++++||+|+. +.+++..+-++.|+++-.+..++++|..
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-EPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-cchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 999999999999999998887777766443 469999999999998 6788888999999999999999999874
No 170
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=5.3e-20 Score=143.22 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=93.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc--------cchhhhhh
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~~ 84 (164)
...+|+|+|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+||+||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4479999999999999999999987642 23333344444444555555 4688999999652 33344557
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQ 163 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (164)
++.+|++|+|+|+++..++.. ..+...+.. .+.|+++|+||+|+.... .+....+ ..++ ..+++||++|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~--~~g~~~~~~iSA~~g 184 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALW--SLGLGEPHPVSALHG 184 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHH--hcCCCCeEEEEcCCC
Confidence 889999999999998655432 223333332 378999999999986321 1222222 2343 4579999988
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
.
T Consensus 185 ~ 185 (472)
T PRK03003 185 R 185 (472)
T ss_pred C
Confidence 4
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.85 E-value=1.8e-20 Score=126.26 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=85.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh----hhhhcccccEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----TTAYYRGAMGIL 92 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~----~~~~~~~~~~~i 92 (164)
+|+++|.+|+|||||++++.+..... ..+.+ +.++.. .+||+||....... ....+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999988753211 12222 122221 26999996322211 122367999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC--cEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--KFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~ 164 (164)
+|+|+++.+++ +..|+..+ ..+.|+++++||+|+.+ ...+...+++++.++ |++++||++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 99999987765 22343332 12578999999999963 234556777778875 99999999985
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1.1e-19 Score=123.32 Aligned_cols=143 Identities=24% Similarity=0.178 Sum_probs=90.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-----------hhh
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT 82 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-----------~~~ 82 (164)
.++|+++|.+|+|||||++++.+..... ...+..+.......+..++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999875322 2122222223333444555 3578999999643211 112
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHH-HHHHHHHh----CCcEEE
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK-GQALADEY----GIKFFE 157 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~----~~~~~~ 157 (164)
..+..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|+.+.. ....++ ...+.+.. +.++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKD-SKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCcc-HHHHHHHHHHHHhhcccccCCceEE
Confidence 245689999999999987665443 22232222 268999999999996332 122222 22222322 368999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
+||++|+
T Consensus 155 ~Sa~~~~ 161 (174)
T cd01895 155 ISALTGQ 161 (174)
T ss_pred EeccCCC
Confidence 9999874
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=5.3e-20 Score=127.85 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=94.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc----------cccch
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRT 79 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~----------~~~~~ 79 (164)
......++|+++|.+|+|||||++++++..+.....++.+.+........+ ..+.|||+||. +.+..
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 455688999999999999999999999976555544444433332222222 58999999994 23334
Q ss_pred hhhhhccc---ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccchHHHHHHHHHhCCcE
Q 031201 80 ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYGIKF 155 (164)
Q Consensus 80 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 155 (164)
+...+++. .+++++|+|.+++.+.... .+...+.. .+.|+++++||+|+... ..+...+++.+.....+.++
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44445543 4678888998765333221 11222221 26889999999998632 22222333445555546799
Q ss_pred EEEeccCCC
Q 031201 156 FETVMQRQI 164 (164)
Q Consensus 156 ~~~Sa~~g~ 164 (164)
+++||++|+
T Consensus 172 ~~~Sa~~~~ 180 (196)
T PRK00454 172 ILFSSLKKQ 180 (196)
T ss_pred EEEEcCCCC
Confidence 999999874
No 174
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.5e-20 Score=118.35 Aligned_cols=144 Identities=22% Similarity=0.437 Sum_probs=109.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...++|+++|-.++||||++-.|.-.+... ..||.+ +...++++.+ +.+.+||.+|++..+.+|+.|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-cccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 358899999999999999999998866443 345555 5566666644 88999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH---hC--CcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIE-QHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE---YG--IKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~--~~~~~~Sa~~g~ 164 (164)
||.|..+.+..++.+..+..+. .....+.|+++.+||.|++++.. .+++.++... .+ .-...++|.+|+
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~---pqei~d~leLe~~r~~~W~vqp~~a~~gd 164 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK---PQEIQDKLELERIRDRNWYVQPSCALSGD 164 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC---HHHHHHHhccccccCCccEeeccccccch
Confidence 9999999988888887554443 33336799999999999986544 3444433322 22 345677777763
No 175
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=8.1e-20 Score=141.12 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=96.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcccc----chh---hhhhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYY 85 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~----~~~---~~~~~ 85 (164)
....+|+|+|.+++|||||+++|.+........+..+.....-.+...+ .++.|||+||.... ..+ .-..+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 3457899999999999999999998654322222222233333344444 57999999995321 111 22346
Q ss_pred ccccEEEEEEECCC----hHHHHHHHHHHHHHHHhcC-----------CCCcEEEEEeCCCCCCCCCccchHHHHHHHHH
Q 031201 86 RGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHAS-----------DNVNKVLVGNKADMDESKRAVPTSKGQALADE 150 (164)
Q Consensus 86 ~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~-----------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (164)
+.++++|+|+|+++ ++.++.+..+..++..+.. .+.|++||+||+|+++. ... .+........
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~el-~e~l~~~l~~ 312 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-REL-AEFVRPELEA 312 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-HHH-HHHHHHHHHH
Confidence 78999999999975 2355555556655544431 36899999999999732 221 2223333345
Q ss_pred hCCcEEEEeccCCC
Q 031201 151 YGIKFFETVMQRQI 164 (164)
Q Consensus 151 ~~~~~~~~Sa~~g~ 164 (164)
.+++++++||++|+
T Consensus 313 ~g~~Vf~ISA~tge 326 (500)
T PRK12296 313 RGWPVFEVSAASRE 326 (500)
T ss_pred cCCeEEEEECCCCC
Confidence 57899999999874
No 176
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=5e-20 Score=128.88 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=89.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC---CCcccceeeeEEEEEEEEEC---------------------------C----
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELD---------------------------G---- 61 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (164)
++|+++|+.|+|||||++.+.+... ........++.......... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976421 11111111111111111110 0
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK- 136 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~- 136 (164)
....+.|||+||++.+.......+..+|++++|+|+.++ ++.+.+ ..+... . ..|+++|+||+|+.+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~~~~-~-~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AALEIM-G-LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHHHHc-C-CCcEEEEEEchhccCHHH
Confidence 125899999999988877777778889999999999863 233322 222222 1 25789999999996321
Q ss_pred CccchHHHHHHHHHh---CCcEEEEeccCCC
Q 031201 137 RAVPTSKGQALADEY---GIKFFETVMQRQI 164 (164)
Q Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~Sa~~g~ 164 (164)
.....++.+++.... +++++++||++|+
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~ 185 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKY 185 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCC
Confidence 111223444444433 5689999999985
No 177
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=8.4e-21 Score=125.23 Aligned_cols=149 Identities=23% Similarity=0.350 Sum_probs=110.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC---C----CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG---S----FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~ 84 (164)
+...+.|+|+|..++|||||+.+.-.. . -+....++.+... .++.++ ...+.+||.+|++..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 345678999999999999999886331 1 1233445555333 333443 4689999999999999999999
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH---HhCCcEEEEec
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIE-QHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD---EYGIKFFETVM 160 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa 160 (164)
+..+|++|+++|+++++.|+......+.+. +..-+++|+++.+||.|+.+.......+.....+. +..+++..|||
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 999999999999999999998888666554 44446899999999999975544433343333323 33579999999
Q ss_pred cCCC
Q 031201 161 QRQI 164 (164)
Q Consensus 161 ~~g~ 164 (164)
.+|+
T Consensus 170 l~ge 173 (197)
T KOG0076|consen 170 LTGE 173 (197)
T ss_pred hhcc
Confidence 9885
No 178
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=1.1e-19 Score=121.66 Aligned_cols=134 Identities=19% Similarity=0.138 Sum_probs=87.5
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch--------hhhhhccccc
Q 031201 19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM 89 (164)
Q Consensus 19 ~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------~~~~~~~~~~ 89 (164)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+||+||...+.. .....+.++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999986521 11122222233334444444 5799999999876543 3345678899
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
++++|+|..+..+.... .+.+.+.. .+.|+++|+||+|+.+... . .......++ +++++||++|.
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~-~-----~~~~~~~~~~~~~~~Sa~~~~ 144 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED-E-----AAEFYSLGFGEPIPISAEHGR 144 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH-H-----HHHHHhcCCCCeEEEecccCC
Confidence 99999999875443322 12222322 2589999999999973221 1 223344566 89999999874
No 179
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.83 E-value=7.2e-20 Score=117.12 Aligned_cols=150 Identities=24% Similarity=0.391 Sum_probs=110.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
...+.+||+++|-.++|||||++.|.+... ....++.+ +..+.+..++ .+.+.+||.+|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 447899999999999999999999988553 33455555 4455555544 4689999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHH--HHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL--ADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|+|.+++..|+++...+-++ ....-..+|+.+..||.|+..+.......+..++ .+.+...+.+|||.+++
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 99999999998899888755554 4444457999999999998532221111111111 12223467899988764
No 180
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1e-19 Score=140.17 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=99.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CCC-----------------------------CcccceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (164)
....++|+++|+.++|||||+++|+.. ... .+.....+.+..... +.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ec
Confidence 466799999999999999999999862 111 111223333333333 34
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHH--HHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKVLVGNKADMDESKRA 138 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (164)
...+.+.|||+||++.|.......+..+|++|+|+|+++.+++. ...+.+ .+..... ..|+++++||+|+.+....
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLG-INQLIVAINKMDSVNYDEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcC-CCeEEEEEEChhccCccHH
Confidence 44578999999999887766666678999999999999874321 111111 1222222 3579999999999632221
Q ss_pred ---cchHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 139 ---VPTSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
...+++.++++..+ ++++++||++|+
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ 193 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGD 193 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccc
Confidence 22455667777665 579999999984
No 181
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=1.1e-19 Score=140.02 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=96.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-------------------------------CcccceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 60 (164)
.+..++|+++|++++|||||+++|+...-. .+..+..+.+. ....++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~--~~~~~~ 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDL--AHKKFE 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcccee--eeEEEe
Confidence 466799999999999999999999853211 01122222233 333333
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKR-- 137 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 137 (164)
...+.+.|||+||++.|.......+..+|++|+|+|++++..+.. ...++..+... . ..|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHH
Confidence 345789999999998876655555788999999999986312211 11222222222 2 246899999999973211
Q ss_pred -ccchHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 138 -AVPTSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 138 -~~~~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
....+++.++.+..+ ++++++||++|+
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~ 191 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGD 191 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCC
Confidence 122345666666655 479999999984
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=6.3e-19 Score=136.00 Aligned_cols=145 Identities=24% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh----------
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---------- 80 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~---------- 80 (164)
....++|+++|.+++|||||+++|++.... ....+..+.+.....+..++ ..+.+||+||.......
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHH
Confidence 345689999999999999999999986532 12222222333334445555 37899999996543321
Q ss_pred -hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHH-HH----hCCc
Q 031201 81 -TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-DE----YGIK 154 (164)
Q Consensus 81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~----~~~~ 154 (164)
....++.+|++|+|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+ . ....++..+.. .. ..++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~~~ 320 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-D-EKTREEFKKELRRKLPFLDFAP 320 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-C-HHHHHHHHHHHHHhcccCCCCc
Confidence 123578999999999999876655442 2333322 3689999999999962 1 11122222111 11 2479
Q ss_pred EEEEeccCCC
Q 031201 155 FFETVMQRQI 164 (164)
Q Consensus 155 ~~~~Sa~~g~ 164 (164)
++++||++|.
T Consensus 321 vi~~SA~~g~ 330 (429)
T TIGR03594 321 IVFISALTGQ 330 (429)
T ss_pred eEEEeCCCCC
Confidence 9999999984
No 183
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=3.9e-19 Score=140.92 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=105.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------cceeeeEEEEEEEEECCEEEEEEEeeCCCccccch
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~ 79 (164)
...+|+|+|+.++|||||+++|+. +.+.... ..+.++++......++...+.+.+||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999987 3333221 22344555555555555568999999999999999
Q ss_pred hhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH-------hC
Q 031201 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YG 152 (164)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~ 152 (164)
.+..+++.+|++|+|+|+.+.... ....++..+.. .++|.++++||+|+.++......+++.++... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999864222 22223333322 26889999999999754444444555555422 35
Q ss_pred CcEEEEeccCCC
Q 031201 153 IKFFETVMQRQI 164 (164)
Q Consensus 153 ~~~~~~Sa~~g~ 164 (164)
+|++.+||++|.
T Consensus 160 ~PVi~~SA~~G~ 171 (607)
T PRK10218 160 FPIVYASALNGI 171 (607)
T ss_pred CCEEEeEhhcCc
Confidence 789999999873
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=5.3e-19 Score=119.04 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=90.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch--------hhhhhcc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------~~~~~~~ 86 (164)
..+|+++|++|+|||||++++.+................... ........+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE-EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987643222111111111111 2223346899999999654322 2344577
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC-CcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 164 (164)
.+|++++|+|.+++.+. ....+...+... +.|+++|+||+|+.. ......+....+....+ .+++++|+++|.
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVK-DKEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccc-cHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 89999999999986211 112233333322 578999999999863 22222333444444443 589999999874
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=1.9e-19 Score=142.93 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=97.0
Q ss_pred cCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh------hhhhc--ccccEEEE
Q 031201 22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL 93 (164)
Q Consensus 22 G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~------~~~~~--~~~~~~i~ 93 (164)
|.+|+|||||+|++++........+..+.+.....+..++ ..+++||+||...+... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999876555566666666656666666 45899999998776543 23333 37899999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+|.++.+.. ..+..++. ..+.|+++++||+|+.+ ..... .+.+++++..+++++++||++|+
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~-~~~i~-~d~~~L~~~lg~pvv~tSA~tg~ 141 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAE-KKGIR-IDEEKLEERLGVPVVPTSATEGR 141 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHH-hCCCh-hhHHHHHHHcCCCEEEEECCCCC
Confidence 9999875432 12222222 23789999999999863 33332 34678889999999999999985
No 186
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=3.4e-19 Score=131.16 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=91.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc--------hhhhhhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY 85 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--------~~~~~~~ 85 (164)
+--.|+|+|++|+|||||+|+|++...........+.......+... ...++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 34569999999999999999999976543222111111122222222 23689999999964322 2233456
Q ss_pred ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC-CcEEEEeccCCC
Q 031201 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETVMQRQI 164 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 164 (164)
.++|++++|+|+++..+- ....+++.+. ..+.|+++|+||+|+.. ......+....+.+..+ .+++++||++|+
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~-~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVK-DKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCC-CHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 789999999999873111 1112233332 22689999999999962 22223344555555445 589999999874
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=2e-19 Score=142.88 Aligned_cols=145 Identities=22% Similarity=0.287 Sum_probs=100.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC--CCC-----cc------cceeeeEEEEEEEEE-----CCEEEEEEEeeCCCc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-----SF------ITTIGIDFKIRTIEL-----DGKRIKLQIWDTAGQ 74 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~d~~g~ 74 (164)
++..+|+|+|+.++|||||+++|+... +.. .+ ....++++....+.+ ++..+.++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999997632 111 00 112233333222222 556789999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCc
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 154 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (164)
..|...+..++..+|++|+|+|+++....+....|.... ..++|+++|+||+|+.+... .+...++.+..+++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~---~~v~~ei~~~lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP---ERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH---HHHHHHHHHHhCCC
Confidence 999998999999999999999998865444444444332 13688999999999863221 12234444555654
Q ss_pred ---EEEEeccCCC
Q 031201 155 ---FFETVMQRQI 164 (164)
Q Consensus 155 ---~~~~Sa~~g~ 164 (164)
++.+||++|+
T Consensus 158 ~~~vi~iSAktG~ 170 (600)
T PRK05433 158 ASDAVLVSAKTGI 170 (600)
T ss_pred cceEEEEecCCCC
Confidence 8999999984
No 188
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=4.2e-19 Score=124.68 Aligned_cols=143 Identities=22% Similarity=0.144 Sum_probs=89.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------------------ccceeeeEEEEEEEEECCEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------------------FITTIGIDFKIRTIELDGKRIK 65 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 65 (164)
||+|+|.+++|||||+++|+...-... ..+..+.+.....+..+ ..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 689999999999999999976322111 01222222222233333 357
Q ss_pred EEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc---cchH
Q 031201 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA---VPTS 142 (164)
Q Consensus 66 ~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~ 142 (164)
+.|||+||+..|.......+..+|++|+|+|+++...-. .......+... . ..++++|+||+|+.+.... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 899999999887665666788999999999998742211 11112222221 1 2457889999998632221 1234
Q ss_pred HHHHHHHHhCC---cEEEEeccCCC
Q 031201 143 KGQALADEYGI---KFFETVMQRQI 164 (164)
Q Consensus 143 ~~~~~~~~~~~---~~~~~Sa~~g~ 164 (164)
+.+++.+..+. +++.+||++|+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ 180 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGD 180 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCC
Confidence 45566666664 58999999884
No 189
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=6.5e-19 Score=133.55 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=97.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-------hhhhhhccc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRG 87 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-------~~~~~~~~~ 87 (164)
...|+|+|.|++|||||+|+|++........+..+.....-.+..++ ...+.|+|+||...-. ......+++
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 44899999999999999999998654222222222112222233332 2369999999964311 112235778
Q ss_pred ccEEEEEEECC---ChHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC--CcEEEEec
Q 031201 88 AMGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETVM 160 (164)
Q Consensus 88 ~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (164)
++++++|+|++ +.+.++....|.+.+..+.. .+.|+++|+||+|+.+ ... ..+..+++.+..+ .+++.+||
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~-~~e-l~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD-EEE-AEERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC-hHH-HHHHHHHHHHHhCCCCCEEEEEC
Confidence 99999999988 45667777778777766543 3589999999999863 222 2344455555544 37999999
Q ss_pred cCCC
Q 031201 161 QRQI 164 (164)
Q Consensus 161 ~~g~ 164 (164)
++|+
T Consensus 316 ~tg~ 319 (390)
T PRK12298 316 ASGL 319 (390)
T ss_pred CCCc
Confidence 9874
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=1e-18 Score=141.83 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=99.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh----------hhhh
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY 84 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~----------~~~~ 84 (164)
.++|+++|.+|+|||||+|++++........+..+ ...+...+......+.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvT--ve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVT--VERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCce--EeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47899999999999999999998765443334333 44444344444568999999998765421 1223
Q ss_pred c--ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 85 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
+ ..+|++++|+|.++.+.-.. +..++.+. +.|+++++||+|+.+ .+.. ..+.+++.+..++|++++||++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l~---l~~ql~e~---giPvIvVlNK~Dl~~-~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAE-KQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HhccCCCEEEEEecCCcchhhHH---HHHHHHHc---CCCEEEEEEchhhhh-ccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 2 47899999999998654222 33333332 689999999999862 3333 3456788889999999999998
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 153 g~ 154 (772)
T PRK09554 153 GR 154 (772)
T ss_pred CC
Confidence 74
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=8.1e-19 Score=135.62 Aligned_cols=135 Identities=21% Similarity=0.204 Sum_probs=92.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc--------cchhhhhhcc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 86 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~~~~ 86 (164)
.+|+++|.+|+|||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 22233333344445566666 6899999999875 2223345678
Q ss_pred cccEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCC
Q 031201 87 GAMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQ 163 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (164)
.+|++|+|+|+.++.+. ..+..|+... +.|+++|+||+|+.+ . .+...++ ...++ .++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~--~---~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPD--E---EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCcc--c---hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 99999999999874332 2333444322 689999999999752 1 1223333 34566 4899999987
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
.
T Consensus 148 ~ 148 (435)
T PRK00093 148 R 148 (435)
T ss_pred C
Confidence 4
No 192
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=3.4e-19 Score=141.28 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=99.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC--CCCCcc------------cceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG--SFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~ 81 (164)
-+|+|+|+.++|||||+++|+.. .+.... ....++++......+....+.+.|||+||+..|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999863 222211 1122344444433333344789999999999999888
Q ss_pred hhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-------HhCCc
Q 031201 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGIK 154 (164)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~ 154 (164)
...++.+|++++|+|+.+.. ......++..+... ++|+++++||+|+.++......+++.++.. +..+|
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 89999999999999997631 23334455555443 688999999999974332223344555443 34578
Q ss_pred EEEEeccCC
Q 031201 155 FFETVMQRQ 163 (164)
Q Consensus 155 ~~~~Sa~~g 163 (164)
++.+||++|
T Consensus 158 vl~~SA~~g 166 (594)
T TIGR01394 158 IVYASGRAG 166 (594)
T ss_pred EEechhhcC
Confidence 999999987
No 193
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=3.2e-22 Score=133.35 Aligned_cols=152 Identities=34% Similarity=0.656 Sum_probs=130.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCE-EEEEEEeeCCCccccchhhhhhcccccE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
....+|++|+|..|+|||+++.+.....|...|..+++.++..+....+.. .++++|||..|++++-.+..-|++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 688999999999999999999999999999999999998877666655543 4689999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQ 163 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (164)
..+|||+++..+|+...+|.+.+.... +..+|+++..||+|..............++++++++ .++++|+|.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 999999999999999999999996643 245888999999998533222334668899999998 8999999965
No 194
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.80 E-value=2.4e-19 Score=124.07 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=96.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC------------------cccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
++..+|+++|+.++|||||+++|+...... ......+.......+..+.....+.|+|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 357899999999999999999998643211 11112222233333331233478999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH-HHHHHh--
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADEY-- 151 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~-- 151 (164)
..|.......+..+|++|+|+|+.+.-.. .....+..+... ++|+++++||+|+.........++.. .+.+..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred cceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 99888888889999999999999864222 222233333333 78899999999987222222223333 444444
Q ss_pred ----CCcEEEEeccCCC
Q 031201 152 ----GIKFFETVMQRQI 164 (164)
Q Consensus 152 ----~~~~~~~Sa~~g~ 164 (164)
.++++.+||++|.
T Consensus 157 ~~~~~~~vi~~Sa~~g~ 173 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGD 173 (188)
T ss_dssp TTTSTEEEEEEBTTTTB
T ss_pred CccccceEEEEecCCCC
Confidence 2479999999884
No 195
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.80 E-value=8.2e-19 Score=117.02 Aligned_cols=140 Identities=19% Similarity=0.107 Sum_probs=90.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-------hhhhhcccccEE
Q 031201 20 LIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAMGI 91 (164)
Q Consensus 20 v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-------~~~~~~~~~~~~ 91 (164)
|+|++|+|||||++++++.... .......+............ ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986554 22222222223333333321 35899999999765433 334577899999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchH--HHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS--KGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|..+..+..... +..... ..+.|+++|+||+|+.......... .........+.+++++||++|+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccC
Confidence 9999999876655543 222222 2378999999999986322111111 1223333346799999999874
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2.9e-18 Score=114.56 Aligned_cols=144 Identities=26% Similarity=0.380 Sum_probs=105.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC--------c----ccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT--------S----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 78 (164)
.+-...||+|.|+.++||||+++.+....... . ...|...++. .+..++ ...++++++|||++|.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcC-cceEEEecCCCcHHHH
Confidence 34567899999999999999999998866311 1 1122333332 222222 2479999999999999
Q ss_pred hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh--CCcEE
Q 031201 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFF 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 156 (164)
-+|..+.+++.++|+++|.+.+..+ +...+++-+....+ +|++|.+||.||.+.. +.+.++++.+.. +.+.+
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~---ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDAL---PPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCC---CHHHHHHHHHhccCCCcee
Confidence 9999999999999999999998888 55555555555433 8999999999997433 345555555555 77899
Q ss_pred EEeccCC
Q 031201 157 ETVMQRQ 163 (164)
Q Consensus 157 ~~Sa~~g 163 (164)
+.+|..+
T Consensus 157 ~~~a~e~ 163 (187)
T COG2229 157 EIDATEG 163 (187)
T ss_pred eeecccc
Confidence 9988755
No 197
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=8e-19 Score=124.16 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=89.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC-------------------------------CcccceeeeEEEEEEEEECCEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELDGKRIK 65 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (164)
+|+++|+.++|||||+.+|+...-. .+.....+.+.....+..+ ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 5899999999999999998642110 0111112222233333443 468
Q ss_pred EEEeeCCCccccchhhhhhcccccEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-C-
Q 031201 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWIRNIEQHASDNVNKVLVGNKADMDESK-R- 137 (164)
Q Consensus 66 ~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~- 137 (164)
+.+||+||+..+.......+..+|++|+|+|+++... |. .......... ... ..|+++++||+|+.... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG-VKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC-CCeEEEEEEccccccccccH
Confidence 9999999988777666667788999999999987421 11 1122222222 222 36899999999996321 1
Q ss_pred ---ccchHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 138 ---AVPTSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 138 ---~~~~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
....+++..+....+ ++++.+||++|+
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~ 191 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGD 191 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCC
Confidence 112223333444443 579999999985
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.79 E-value=3.1e-18 Score=135.45 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=78.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCccccee----eeEEEEEEEE------------ECCEEEEEEEeeCCCccccc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTI----GIDFKIRTIE------------LDGKRIKLQIWDTAGQERFR 78 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~----~~~~~~~~~~------------~~~~~~~~~l~d~~g~~~~~ 78 (164)
..-|+++|.+++|||||+++|.+..+........ +..+...... ++.....+.|||+||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999877654322212 2111111100 00001248999999999999
Q ss_pred hhhhhhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.++..+++.+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRI 134 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCcc
Confidence 999999999999999999987 555544432 221 268999999999996
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.8e-18 Score=131.92 Aligned_cols=146 Identities=26% Similarity=0.152 Sum_probs=91.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch----------h-
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------I- 80 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~----------~- 80 (164)
...++|+|+|.+|+|||||+|+|++... .....+..+.+.....+..++ ..+.+||+||...... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 4579999999999999999999998653 222233333333333444454 4678999999532211 1
Q ss_pred hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccchHHH-HHHHHHhCCcEEEE
Q 031201 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKG-QALADEYGIKFFET 158 (164)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 158 (164)
....+..+|++|+|+|++++.+..... +...+.. .+.|+++++||+|+.+... ....++. ..+.....++++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 123577899999999999876554432 2333322 2688999999999862211 0111111 11211224799999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|.
T Consensus 325 SA~~~~ 330 (435)
T PRK00093 325 SALTGQ 330 (435)
T ss_pred eCCCCC
Confidence 999884
No 200
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=6.3e-18 Score=130.45 Aligned_cols=134 Identities=23% Similarity=0.276 Sum_probs=90.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc--------ccchhhhhhccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG 87 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--------~~~~~~~~~~~~ 87 (164)
+|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||.. .+.......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987632 12223333334444455555 469999999953 334445567889
Q ss_pred ccEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
+|++++|+|..+..+. ..+..|+.. .+.|+++|+||+|+..... ...++ .+.++ +++++||++|.
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~~~~~-----~~~~~-~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGKKEDA-----VAAEF-YSLGFGEPIPISAEHGR 146 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCCcccc-----cHHHH-HhcCCCCeEEEeCCcCC
Confidence 9999999999874322 233333332 2689999999999863221 12223 45676 89999999874
No 201
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=2.8e-18 Score=122.97 Aligned_cols=145 Identities=17% Similarity=0.113 Sum_probs=95.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc--------hhhhhhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY 85 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--------~~~~~~~ 85 (164)
+---|+|+|.|++|||||+|++++.+..-......++......+...+ ..++.|.||||-+.-. .....-+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 345689999999999999999999876543333333223344444433 5699999999954322 2234457
Q ss_pred ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
+++|+++||+|+..+..- .....++.+.. .+.|+++++||+|........ ......+.....+ .++++||++|.
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccC
Confidence 799999999999863221 11224444444 267999999999986332222 3444555455555 89999999874
No 202
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=3.1e-18 Score=139.05 Aligned_cols=142 Identities=21% Similarity=0.228 Sum_probs=93.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----------cchhh-
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT- 81 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~~- 81 (164)
..+||+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++. .+.||||||... +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999997642 222233334444455566664 467999999531 22211
Q ss_pred hhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHH-HHHH----hCCcEE
Q 031201 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA-LADE----YGIKFF 156 (164)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~----~~~~~~ 156 (164)
...++.+|++++|+|+++..+.+.+.. +..+.. .+.|+++|+||+|+.+... .+..++ +... ..++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence 234678999999999998777766543 333322 3689999999999963211 111211 1111 134789
Q ss_pred EEeccCCC
Q 031201 157 ETVMQRQI 164 (164)
Q Consensus 157 ~~Sa~~g~ 164 (164)
.+||++|.
T Consensus 600 ~iSAktg~ 607 (712)
T PRK09518 600 NLSAKTGW 607 (712)
T ss_pred EEECCCCC
Confidence 99999984
No 203
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=9.4e-18 Score=116.51 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=93.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 78 (164)
.++|+++|..++|||||+++|+.... ..+..+ +++.......+.....++.|.|+||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~r--g~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhc--CccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 47999999999999999999986310 011122 223333333444445688999999998877
Q ss_pred hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccchHHHHHHHHHhC---
Q 031201 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG--- 152 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--- 152 (164)
......+..+|++++|+|+...-. ......+..+... ++| +++++||+|+..... ....+++.++....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 766777889999999999876321 1122233333332 455 788899999852221 112334555555543
Q ss_pred --CcEEEEeccCCC
Q 031201 153 --IKFFETVMQRQI 164 (164)
Q Consensus 153 --~~~~~~Sa~~g~ 164 (164)
++++.+||++|.
T Consensus 156 ~~v~iipiSa~~g~ 169 (195)
T cd01884 156 DNTPIVRGSALKAL 169 (195)
T ss_pred cCCeEEEeeCcccc
Confidence 689999999874
No 204
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=9.1e-18 Score=133.75 Aligned_cols=140 Identities=21% Similarity=0.195 Sum_probs=94.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC---CCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
-|+++|..++|||||+++|++. .+++......+++.....+...+. ..+.|||+||++.|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4889999999999999999963 344444444444443333333222 358999999999887777777889999999
Q ss_pred EEECCC---hHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccchHHHHHHHHHhC---CcEEEEeccCCC
Q 031201 94 VYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEYG---IKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~g~ 164 (164)
|+|+.. +++.+.+ ..+... ++| +++|+||+|+.+..+ ....+++.++....+ ++++++||++|+
T Consensus 81 VVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 999886 4444443 222222 344 579999999963221 122344556655554 689999999985
No 205
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=8.5e-18 Score=113.43 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=88.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----------cchhhhhhcc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR 86 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~~~~~~~ 86 (164)
+|+++|.+|+|||||++.+.+..+.....++.+.+.....+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997665555555554444444444444 899999999432 3333444443
Q ss_pred ---cccEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccchHHHHHHHH--HhCCcEEEE
Q 031201 87 ---GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALAD--EYGIKFFET 158 (164)
Q Consensus 87 ---~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~ 158 (164)
+.+.+++++|..+.. ....+..|+... +.|+++++||+|+.... ............+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457888999987652 223333444332 57899999999985221 1112222222222 334589999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|.
T Consensus 152 Sa~~~~ 157 (170)
T cd01876 152 SSLKGQ 157 (170)
T ss_pred ecCCCC
Confidence 999874
No 206
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=3.4e-17 Score=116.73 Aligned_cols=83 Identities=27% Similarity=0.282 Sum_probs=58.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-------hhhhhhccccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 89 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-------~~~~~~~~~~~ 89 (164)
+|+++|++|+|||||+++|++........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998653322222222233344445555 689999999964332 12334688999
Q ss_pred EEEEEEECCChH
Q 031201 90 GILLVYDVTDES 101 (164)
Q Consensus 90 ~~i~v~d~~~~~ 101 (164)
++++|+|+++++
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 207
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=3.3e-18 Score=122.19 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=80.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCC-------------cc---cceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTT-------------SF---ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~ 80 (164)
+|+++|+.|+|||||+++|+...-.. .+ ....+.++......+......+.+||+||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999997632110 00 011112222222333334478999999999999888
Q ss_pred hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
+...++.+|++++|+|+++.... ....++..+... ++|+++++||+|+..+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~a~~ 133 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAGADL 133 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccCCCH
Confidence 88899999999999999875332 333444444332 689999999999974443
No 208
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.77 E-value=6.9e-18 Score=122.95 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=92.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch---
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--- 79 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--- 79 (164)
...++|+++|.+|+|||||+|+|++..+... ..++.+.+.....+..++..+.+.+|||||......
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 4578999999999999999999999876543 344455555556666678888999999999322111
Q ss_pred -----------------------hhhhhcc--cccEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 80 -----------------------ITTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 80 -----------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.+...+. .+|+++++++.+.. .+... ..+++.+. . .+|+++|+||+|+.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~-~v~vi~VinK~D~l 156 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---K-RVNIIPVIAKADTL 156 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---c-cCCEEEEEECCCcC
Confidence 1112333 36677777776541 11111 12233332 2 68999999999984
Q ss_pred C-CCCccchHHHHHHHHHhCCcEEEEe
Q 031201 134 E-SKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 134 ~-~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
. .+.....+.+.+..+.+++++|...
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~ 183 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFP 183 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCC
Confidence 2 2333445667777888888777544
No 209
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=4.6e-17 Score=132.23 Aligned_cols=141 Identities=18% Similarity=0.148 Sum_probs=90.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccc--------cchhh
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTIT 81 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~ 81 (164)
......+|+|+|.+++|||||+|+|++..... ...+..+.+........++ ..+.+|||||... +....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 34456789999999999999999999865421 2223333333333334444 5789999999653 22334
Q ss_pred hhhcccccEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEe
Q 031201 82 TAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETV 159 (164)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~S 159 (164)
..++..+|++|+|+|+.+.- .... .|...+.. .+.|+++|+||+|+.... ....++.. .+. ..+++|
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~-----~~~~~~~~-lg~~~~~~iS 417 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE-----YDAAEFWK-LGLGEPYPIS 417 (712)
T ss_pred HHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch-----hhHHHHHH-cCCCCeEEEE
Confidence 45678999999999997631 1111 24444432 378999999999985321 12233322 233 457899
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 418 A~~g~ 422 (712)
T PRK09518 418 AMHGR 422 (712)
T ss_pred CCCCC
Confidence 99984
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.3e-17 Score=132.21 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=79.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccc----eeeeEEEEEEEE--ECCEE-----E-----EEEEeeCCCccc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT----TIGIDFKIRTIE--LDGKR-----I-----KLQIWDTAGQER 76 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~l~d~~g~~~ 76 (164)
.+...|+++|..++|||||+++|.+......... +.+.++...... ..+.. . .+.|||+||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4456799999999999999999987654433222 222111111100 00111 1 278999999999
Q ss_pred cchhhhhhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 77 FRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
|..++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCc
Confidence 99988888899999999999987 666655432 211 378999999999985
No 211
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=1.4e-17 Score=117.54 Aligned_cols=120 Identities=20% Similarity=0.214 Sum_probs=81.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC--C--------------cccceeeeEEEEEEEEEC--------CEEEEEEEeeCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA 72 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~l~d~~ 72 (164)
+|+++|..++|||||+.+|+...-. . +.....++......+.+. +..+.+.|||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999764211 0 011111111112222332 447899999999
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 140 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 140 (164)
|+..|.......++.+|++++|+|+.+..+.+. ...+.... ..++|+++++||+|+...+....
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~---~~~~p~ilviNKiD~~~~e~~~~ 145 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL---KERVKPVLVINKIDRLILELKLS 145 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCcchhhhcCC
Confidence 999999988999999999999999987644433 22222222 23678999999999863344443
No 212
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=1e-17 Score=128.26 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=93.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC---CcccceeeeEEEEEE--------------EEE----CC------EEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRT--------------IEL----DG------KRIK 65 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 65 (164)
+..++|+++|..++|||||+++|.+.... +......+....... ++. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56889999999999999999999763221 111111111111000 001 11 1357
Q ss_pred EEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccchHHH
Q 031201 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKG 144 (164)
Q Consensus 66 ~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~ 144 (164)
+.+||+||++.|...+......+|++++|+|+++..........+..+... . ..|+++++||+|+.+... ....+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 999999999998887777788899999999998632111112222222222 1 246899999999973221 1223445
Q ss_pred HHHHHHh---CCcEEEEeccCCC
Q 031201 145 QALADEY---GIKFFETVMQRQI 164 (164)
Q Consensus 145 ~~~~~~~---~~~~~~~Sa~~g~ 164 (164)
.++.+.. +++++++||++|+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~ 182 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNA 182 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCC
Confidence 5555443 5789999999985
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.75 E-value=1.6e-17 Score=127.14 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=93.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCC---CCcccceeeeEEEEEEEE------------------EC--C----
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIE------------------LD--G---- 61 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~~~~------------------~~--~---- 61 (164)
-+..+..++|+++|+.++|||||+.+|.+... .++.....+++....... .+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 35667789999999999999999999966321 111112222221110000 00 1
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
....+.|||+||++.|..........+|++++|+|+.++ ++.+.+. .+... . ..|+++|+||+|+.+...
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~-~-i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII-G-IKNIVIVQNKIDLVSKER 156 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-CCcEEEEEEeeccccchh
Confidence 135899999999988766555556678999999999853 3333322 22221 1 246899999999964222
Q ss_pred c-cchHHHHHHHHHh---CCcEEEEeccCCC
Q 031201 138 A-VPTSKGQALADEY---GIKFFETVMQRQI 164 (164)
Q Consensus 138 ~-~~~~~~~~~~~~~---~~~~~~~Sa~~g~ 164 (164)
. ...+++..+.+.. +.+++++||++|+
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~ 187 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKV 187 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCc
Confidence 1 1234455555432 5789999999984
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=3.9e-17 Score=115.11 Aligned_cols=113 Identities=29% Similarity=0.327 Sum_probs=79.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------cceeeeEEEEEEEE--E---CCEEEEEEEeeCCCc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF-----------------ITTIGIDFKIRTIE--L---DGKRIKLQIWDTAGQ 74 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~l~d~~g~ 74 (164)
+|+|+|+.++|||||+++|+........ ....++++....+. . ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 01111222222222 1 355689999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
..+......++..+|++++|+|+.+..++.. ..++..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987655432 233333322 258999999999975
No 215
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=2.9e-17 Score=119.19 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=78.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------cc---eeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-----------------IT---TIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------~~---~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
..+|+|+|++|+|||||+++|+...-.... .+ ..+.++......++...+.+.+||+||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 357999999999999999999753211000 00 0112223333333344578999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
..|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 98887677778999999999999874221 22233333322 36899999999998643
No 216
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=2.6e-17 Score=125.64 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=95.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC----------------CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS----------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
.....++|+++|..++|||||+++|++.. ...+.... ++.....+.++.....+.|||+||+
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG--ITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC--cceeeEEEEEcCCCEEEEEEECCch
Confidence 35678999999999999999999997420 01111222 3333344445445568999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--ccchHHHHHHHHHh
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEY 151 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~--~~~~~~~~~~~~~~ 151 (164)
+.|..........+|++++|+|+......+ ....+..+... ++|.+ +++||+|+.+... ....++++++.+..
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 988765555667889999999998621111 11222223222 55654 6899999863221 11233566677766
Q ss_pred C-----CcEEEEeccCC
Q 031201 152 G-----IKFFETVMQRQ 163 (164)
Q Consensus 152 ~-----~~~~~~Sa~~g 163 (164)
+ ++++.+||++|
T Consensus 162 ~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKA 178 (394)
T ss_pred CCCccCccEEECccccc
Confidence 5 78999999986
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=3.7e-17 Score=124.80 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC-------CC---------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDG-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
+.....++|+++|..++|||||+++|++. .+ ..+... +++.......++....++.|+|+||
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--GiT~~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKAR--GITINTSHVEYETANRHYAHVDCPG 84 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhc--CceEEEeeeEEcCCCcEEEEEECCC
Confidence 45577899999999999999999999862 00 111122 2333333344444446889999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--ccchHHHHHHHHH
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADE 150 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~--~~~~~~~~~~~~~ 150 (164)
+..|.......+..+|++++|+|+.....- .....+..+.. .++|.+ +++||+|+.+... +...+++..+.+.
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 988776666667889999999999863211 12223333322 256755 5799999963211 1123355666665
Q ss_pred hC-----CcEEEEeccCC
Q 031201 151 YG-----IKFFETVMQRQ 163 (164)
Q Consensus 151 ~~-----~~~~~~Sa~~g 163 (164)
.+ ++++++||++|
T Consensus 161 ~~~~~~~~~ii~~Sa~~g 178 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKA 178 (396)
T ss_pred cCCCcCceeEEecchhcc
Confidence 53 68999999987
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.74 E-value=5.4e-17 Score=123.85 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=95.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
.....++|+++|+.++|||||+++|++... ..+... +++.......++.....+.|+|+||+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--g~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKER--GITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhc--CccEEEEeeEecCCCcEEEEEECCCH
Confidence 356689999999999999999999986311 111122 23333334444444568899999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--chHHHHHHHHHh
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEY 151 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~ 151 (164)
+.|.......+..+|++++|+|+.....- .....+..+... ++| +++++||+|+.+.+... ..++..++.+..
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 88876666667789999999998763111 111222223222 566 67889999986322111 223556666555
Q ss_pred C-----CcEEEEeccCC
Q 031201 152 G-----IKFFETVMQRQ 163 (164)
Q Consensus 152 ~-----~~~~~~Sa~~g 163 (164)
+ ++++.+||++|
T Consensus 162 ~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 162 DFPGDDIPVIRGSALKA 178 (394)
T ss_pred CCCcCCccEEEeecccc
Confidence 4 58999999987
No 219
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=5e-17 Score=118.03 Aligned_cols=140 Identities=16% Similarity=0.069 Sum_probs=89.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC------------------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 78 (164)
+|+++|++++|||||+++|+...- +.......+++.....+..++ +++.+||+||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999974211 011122223333334444444 689999999998888
Q ss_pred hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEE
Q 031201 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFE 157 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~ 157 (164)
..+...++.+|++|+|+|+.+...-. ....+..+.. .++|+++++||+|+.+.......+++++......+ ..++
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence 88888999999999999997632211 1223333322 26889999999998743332333444444333333 3566
Q ss_pred EeccC
Q 031201 158 TVMQR 162 (164)
Q Consensus 158 ~Sa~~ 162 (164)
+|+..
T Consensus 155 isa~~ 159 (270)
T cd01886 155 IGEED 159 (270)
T ss_pred cccCC
Confidence 66653
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=3.4e-17 Score=106.87 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=88.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc----cccchhhhhhcccccEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----ERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~----~~~~~~~~~~~~~~~~~i 92 (164)
||+++|+.|||||||+++|.+... .+..|..+++. + .+.|+||. ..+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999999665 23232222222 1 23689993 234444455566999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
+|.|++++.+.- -..+... -+.|++-|+||+|+.. .....+.++++.+..|+ .+|++|+.+|+
T Consensus 69 ll~dat~~~~~~-----pP~fa~~--f~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~e 132 (143)
T PF10662_consen 69 LLQDATEPRSVF-----PPGFASM--FNKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGE 132 (143)
T ss_pred EEecCCCCCccC-----Cchhhcc--cCCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCc
Confidence 999999864421 1112111 1578999999999972 33456778889899998 78999999985
No 221
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.3e-18 Score=109.83 Aligned_cols=149 Identities=22% Similarity=0.376 Sum_probs=106.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..+...+|+++|--|+||+++.-++.-...... .|+.+ +...++.+ +...+++||.+|+...+..|+.|+.+.|.
T Consensus 14 g~e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 14 GPEREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred CCccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccce
Confidence 445889999999999999999988877655443 34444 44455555 55789999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC--CccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK--RAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|+|.+|.+....... ++..+.+..-....+++++||.|.+... .++......+-.+..-+.+|++||.+|+
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGE 165 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccccc
Confidence 999999999887655555 4444433322357789999999986311 1111122222233334689999999885
No 222
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=8.8e-17 Score=124.10 Aligned_cols=147 Identities=18% Similarity=0.127 Sum_probs=99.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCcccceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (164)
....++|+++|+.++|||||+.+|+...- ..+... ++++......+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~r--GiTi~~~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERER--GITIDIALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhc--CceEEEEEEEec
Confidence 45678999999999999999998864211 111112 223333333444
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCC
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN-------NIRNWIRNIEQHASDNV-NKVLVGNKADM 132 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl 132 (164)
...+.+.|.|+||++.|.......+..+|++|+|+|+.+ ..|+ ..+..+..+... ++ ++++++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccC
Confidence 455789999999999999888888999999999999986 2221 222222222222 45 47888999998
Q ss_pred CCCC-----CccchHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 133 DESK-----RAVPTSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 133 ~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
.+.. .....++++.+.++.+ ++|+++||++|+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ 199 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD 199 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccc
Confidence 5211 1123566777877776 679999999985
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.6e-16 Score=124.61 Aligned_cols=140 Identities=18% Similarity=0.242 Sum_probs=105.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch------hhhhhc--c
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~------~~~~~~--~ 86 (164)
..+|+++|.||+|||||+|++++........+..+++...-.+...+ .++++.|.||-..... ..+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45699999999999999999999888777788777666666666655 4599999999543322 223333 3
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+.|++|.|.|+++-+.--.+.-.+.++ +.|++++.|++|.+ ..+.+..+ .+++.+..|+|.+++||++|.
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQLlE~------g~p~ilaLNm~D~A-~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~ 150 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQLLEL------GIPMILALNMIDEA-KKRGIRID-IEKLSKLLGVPVVPTVAKRGE 150 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHHHHHc------CCCeEEEeccHhhH-HhcCCccc-HHHHHHHhCCCEEEEEeecCC
Confidence 579999999999865433332222222 78899999999997 45555444 889999999999999999884
No 224
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=1.5e-16 Score=121.98 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=96.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
......++|+++|.+++|||||+++|++... ..+..+ +++.......+.....++.|.|+||
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~r--g~T~~~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKAR--GITINTAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcC--CEeEEccEEEEccCCeEEEEEECCC
Confidence 4466779999999999999999999987421 111112 2233333333433446789999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccchHHHHHHHHH
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADE 150 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~ 150 (164)
+..|.......+..+|++++|+|+...-. ......+..+... ++| +++++||+|+.+... +...+++.++.+.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 98877666667789999999999875321 1222222333222 567 778899999973221 1122345556555
Q ss_pred hC-----CcEEEEeccCCC
Q 031201 151 YG-----IKFFETVMQRQI 164 (164)
Q Consensus 151 ~~-----~~~~~~Sa~~g~ 164 (164)
.+ ++++.+||.+|.
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred hCCCCCcceEEEcchhhcc
Confidence 43 689999999873
No 225
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.72 E-value=1.2e-16 Score=112.94 Aligned_cols=140 Identities=20% Similarity=0.331 Sum_probs=89.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcc---cceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-----hhhhhcccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF---ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGA 88 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-----~~~~~~~~~ 88 (164)
||+++|++++||||+.+.+.++..+... .+|.. .....+...+ .+.+++||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 7999999999999999999986554332 23332 3333333332 35899999999875543 356678999
Q ss_pred cEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-CCCcc----chHHHHHHHHHhC---CcEEE
Q 031201 89 MGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-SKRAV----PTSKGQALADEYG---IKFFE 157 (164)
Q Consensus 89 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~----~~~~~~~~~~~~~---~~~~~ 157 (164)
+++|+|+|+.+. +.+..+...++.+.+..+ +..+-++++|+|+.. +.+.. ..+.+.+.+...+ +.++.
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999999853 345566667777777777 899999999999842 22222 2233444444555 67777
Q ss_pred Eec
Q 031201 158 TVM 160 (164)
Q Consensus 158 ~Sa 160 (164)
+|.
T Consensus 157 TSI 159 (232)
T PF04670_consen 157 TSI 159 (232)
T ss_dssp E-T
T ss_pred ccC
Confidence 774
No 226
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.72 E-value=3.3e-17 Score=125.88 Aligned_cols=149 Identities=24% Similarity=0.337 Sum_probs=109.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....+||+++|..|+|||||+-.+....++....+-...-.-. ..+....+...+.|++...........-++.+|+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 45678999999999999999999999998887654433311111 2333455779999998776666666777899999
Q ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHH-HHHHHHHhC-C-cEEEEeccC
Q 031201 91 ILLVYDVTDESSFNNIRN-WIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSK-GQALADEYG-I-KFFETVMQR 162 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~ 162 (164)
+.++|+++++.+++.+.. |+..+++... .++|+||||||+|+.+.... ..+. ..-+..++. + ..++|||++
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 999999999999999988 8888887763 47999999999999743333 2222 222222222 2 467888875
No 227
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=114.98 Aligned_cols=145 Identities=18% Similarity=0.233 Sum_probs=100.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh-------hhhhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYY 85 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-------~~~~~ 85 (164)
....|.++|.|++|||||++.+...+-.. .|.. .+..-..-++.+++.. ++.+-|.||.-+-.++ .-..+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaF-TTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF-TTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccce-eeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHH
Confidence 45578899999999999999999865432 2222 1111112233344333 5999999995433322 22346
Q ss_pred ccccEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCc-EEEEe
Q 031201 86 RGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETV 159 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~S 159 (164)
+.++.++||+|++.. +.|+.++.+..++..+.+ .+.|.++|+||+|+++++. +...++.+...-+ ++++|
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~----~~l~~L~~~lq~~~V~pvs 348 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK----NLLSSLAKRLQNPHVVPVS 348 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH----HHHHHHHHHcCCCcEEEee
Confidence 689999999999998 889998888888766544 4789999999999963221 2246666666654 99999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 349 A~~~e 353 (366)
T KOG1489|consen 349 AKSGE 353 (366)
T ss_pred ecccc
Confidence 99985
No 228
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=2.2e-16 Score=122.51 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=96.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC------C----------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
.....++|+++|..++|||||+++|++.. . ..+... +++.......+......+.|+|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~r--GiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERAR--GITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhC--CeeEEEEEEEEecCCcEEEEEECCCH
Confidence 45778999999999999999999998521 1 112222 23333333333333458899999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccchHHHHHHHHHh
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEY 151 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~ 151 (164)
+.|.......+..+|++++|+|+.....- ....++..+... ++| +++++||+|+.+.+. +...+++.++.+..
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 98877666677889999999998863221 222333333332 566 778899999963211 11223455565553
Q ss_pred -----CCcEEEEeccCC
Q 031201 152 -----GIKFFETVMQRQ 163 (164)
Q Consensus 152 -----~~~~~~~Sa~~g 163 (164)
+++++.+||.+|
T Consensus 231 g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 231 EFPGDDIPIISGSALLA 247 (478)
T ss_pred CCCcCcceEEEEEcccc
Confidence 468999999887
No 229
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.70 E-value=3.8e-16 Score=118.05 Aligned_cols=139 Identities=22% Similarity=0.207 Sum_probs=95.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh--------hhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTA 83 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~ 83 (164)
..-+|++++|.||+|||||+|.|+++..- ....+..+-+.-...+.++| +++.+.||.|..+..+. ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 45689999999999999999999996543 22333344466667788888 88999999996544332 244
Q ss_pred hcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
.++.+|++++|+|.+.+.+-... ..+. ..+.+.|+++|.||.||..... ...+....+.+++.+||++|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~------~~~~~~~~~~~~i~iSa~t~ 361 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIE------LESEKLANGDAIISISAKTG 361 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccc------cchhhccCCCceEEEEecCc
Confidence 57799999999999985221111 1111 3445789999999999973222 11112223447899999988
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 362 ~ 362 (454)
T COG0486 362 E 362 (454)
T ss_pred c
Confidence 4
No 230
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.70 E-value=6.2e-16 Score=111.09 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=82.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc------c---ch
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------F---RT 79 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~------~---~~ 79 (164)
+....+.++|+|+|+|++|||||.|.+.+.+.........+.....-.+... ..+++.|+|+||--. + .+
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHH
Confidence 4556889999999999999999999999998877666655544433333333 346999999999211 1 11
Q ss_pred ---hhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 80 ---ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 80 ---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.-...+..+|++++++|+++....-+. +.+..+..+. ++|-++|+||.|..
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKL 198 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcc
Confidence 112345679999999999963222111 2233333332 58889999999974
No 231
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=7.1e-17 Score=109.78 Aligned_cols=117 Identities=21% Similarity=0.409 Sum_probs=74.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCEEEEEEEeeCCCccccchhhhh---hcccccE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMG 90 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~~~---~~~~~~~ 90 (164)
.-.|+++|++|+|||+|+..|..+...+...+. .... ...+ +.....+.+.|+||+.+.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457999999999999999999998665544333 2111 1122 223347999999999988875444 4788999
Q ss_pred EEEEEECCC-hHHHHHHHHHH-HHHHHh--cCCCCcEEEEEeCCCCCCC
Q 031201 91 ILLVYDVTD-ESSFNNIRNWI-RNIEQH--ASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 91 ~i~v~d~~~-~~s~~~~~~~~-~~~~~~--~~~~~p~ivv~nK~Dl~~~ 135 (164)
+|||+|.+. +..+.++..++ ..+... ....+|++|++||.|+..+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999975 45566666644 444332 2357999999999999743
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=1.2e-15 Score=111.06 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=84.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcc------------------cceeeeEEEEEEEEECCEEEEEEEeeCCCccccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~ 78 (164)
+|+++|++|+|||||+++++........ ....++......+..++ +.+.+||+||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999763321100 01111222223334444 678999999998887
Q ss_pred hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEE
Q 031201 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
..+...+..+|++++|+|.++....... ..+..+.. .+.|.++++||+|+.... ..+...++....+.+++.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~~~~~ 150 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD---FDKTLAALQEAFGRPVVP 150 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC---HHHHHHHHHHHhCCCeEE
Confidence 7788889999999999999875444322 22223322 268999999999987432 122234444445554443
No 233
>COG2262 HflX GTPases [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=113.66 Aligned_cols=148 Identities=20% Similarity=0.180 Sum_probs=106.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc---------cccch
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ---------ERFRT 79 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~---------~~~~~ 79 (164)
.........|.++|..++|||||+|+|++...........+.+...+.+.+.+ ...+.+-||.|. +.|.+
T Consensus 186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH
Confidence 34556788999999999999999999998766655444455555666666664 247899999993 22333
Q ss_pred hhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
... -...+|+++.|+|+++|+..+.+..-...+.+.....+|+++|.||+|+..... . ......... ..+.+|
T Consensus 265 TLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~---~~~~~~~~~-~~v~iS 337 (411)
T COG2262 265 TLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--I---LAELERGSP-NPVFIS 337 (411)
T ss_pred HHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--h---hhhhhhcCC-CeEEEE
Confidence 222 245899999999999998888887777888777666799999999999752221 1 111111112 589999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 338 A~~~~ 342 (411)
T COG2262 338 AKTGE 342 (411)
T ss_pred eccCc
Confidence 99975
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=7.2e-16 Score=119.92 Aligned_cols=148 Identities=20% Similarity=0.148 Sum_probs=90.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc---------------------------------ccceeeeEEEEEEEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIE 58 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 58 (164)
....++|+++|..++|||||+++|+...-... .....+++.... .
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~--~ 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR--Y 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE--E
Confidence 46679999999999999999999976421110 001112222222 2
Q ss_pred ECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 031201 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (164)
Q Consensus 59 ~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (164)
+.....++.|+|+||+..|.......+..+|++++|+|+...-.-. ....+..+... . ..|+++++||+|+.+....
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLL-G-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHh-C-CCceEEEEEeeccccchhH
Confidence 3333468999999999888655555578999999999987531110 11111112222 1 2468999999999632221
Q ss_pred c---chHHHHHHHHHh----CCcEEEEeccCCC
Q 031201 139 V---PTSKGQALADEY----GIKFFETVMQRQI 164 (164)
Q Consensus 139 ~---~~~~~~~~~~~~----~~~~~~~Sa~~g~ 164 (164)
. ..++...+.+.. ..+++.+||++|+
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ 211 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGD 211 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCC
Confidence 1 122233334443 3689999999985
No 235
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=7.5e-16 Score=117.98 Aligned_cols=144 Identities=21% Similarity=0.179 Sum_probs=88.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC--C-------------------------------cccceeeeEEEEEEEEECCE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT--T-------------------------------SFITTIGIDFKIRTIELDGK 62 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~ 62 (164)
+||+++|+.++|||||+++|+...-. . +.....+++.....+.. .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 58999999999999999999653211 1 01111122222222323 3
Q ss_pred EEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc---
Q 031201 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 139 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--- 139 (164)
..++.|+|+||++.|.......+..+|++|+|+|+...-.- .....+..+... . ..++++++||+|+.+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence 45889999999998876566678899999999998753211 111111222222 1 24688999999996322211
Q ss_pred chHHHHHHHHHhC---CcEEEEeccCCC
Q 031201 140 PTSKGQALADEYG---IKFFETVMQRQI 164 (164)
Q Consensus 140 ~~~~~~~~~~~~~---~~~~~~Sa~~g~ 164 (164)
..++...+.+..+ ++++++||++|+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ 183 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGD 183 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCC
Confidence 1223333444444 479999999984
No 236
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.67 E-value=1.9e-15 Score=122.57 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=92.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC------------------cccceeeeEEEEEEEEECCEEEEEEEeeCC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 72 (164)
..++..+|+|+|..++|||||+++|+...-.. ......+++.....+..++ +++.|||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence 34567899999999999999999997522110 0112223333334444444 689999999
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 152 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (164)
|+..+.......+..+|++|+|+|+.+....+.. .++..+.. .++|+++++||+|+...... ....++....+
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~~~---~~~~~i~~~l~ 156 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGANFL---RVVNQIKQRLG 156 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCCHH---HHHHHHHHHhC
Confidence 9988877788889999999999999874333322 22233322 26889999999999743321 22333333333
Q ss_pred C----cEEEEeccCC
Q 031201 153 I----KFFETVMQRQ 163 (164)
Q Consensus 153 ~----~~~~~Sa~~g 163 (164)
. ..+.+|+..|
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 2 2456666554
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=2.9e-15 Score=114.46 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=95.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
......++|+++|..++|||||+++|++... ..+..+ +++.......+.....++.|.|+||
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--g~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKAR--GITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhc--CeEEeeeEEEEcCCCeEEEEEECCC
Confidence 3457789999999999999999999987311 111122 2333333444443446889999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCc--cchHHHHHHHHH
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRA--VPTSKGQALADE 150 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~--~~~~~~~~~~~~ 150 (164)
+..|.......+..+|++++|+|+...-. .....++..+... +.|.+ +++||+|+.+.... ...+++..+...
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 98877666667889999999999876321 1222233333322 57765 57999999631111 122334445444
Q ss_pred h-----CCcEEEEeccCC
Q 031201 151 Y-----GIKFFETVMQRQ 163 (164)
Q Consensus 151 ~-----~~~~~~~Sa~~g 163 (164)
. +++++.+||++|
T Consensus 161 ~~~~~~~~~iv~iSa~~g 178 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKA 178 (396)
T ss_pred cCCCccCCcEEEeecccc
Confidence 3 368999999986
No 238
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=4.2e-15 Score=95.06 Aligned_cols=105 Identities=25% Similarity=0.328 Sum_probs=67.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----------cchhhhhhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYY 85 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~~~~~~ 85 (164)
+|+|+|.+|+|||||+|+|++..... ...+..+.......+..++. .+.|+|+||-.. +..... .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLE-QI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence 69999999999999999999854321 11122222222344455664 457999999432 112223 34
Q ss_pred ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031201 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (164)
..+|++++|+|.+++.. +....+++.+. .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 78999999999877422 22333334442 47899999998
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.66 E-value=3.5e-15 Score=115.33 Aligned_cols=148 Identities=17% Similarity=0.096 Sum_probs=95.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC--C-----------------------------CCcccceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (164)
....++|+++|+.++|||||+.+|+... . .++.....+++. ....+.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~--~~~~~~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEe--eeEEEc
Confidence 4567899999999999999999987521 0 111222223333 333344
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH---HH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KVLVGNKADMD 133 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (164)
.....+.|+|+||+..|.......+..+|.+|+|+|+.... .+ ...+..+..+... ++| +++++||+|..
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDK 158 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence 44578999999999998887777788999999999988631 11 1222222333322 554 67899999953
Q ss_pred CC-----CCccchHHHHHHHHHh-----CCcEEEEeccCCC
Q 031201 134 ES-----KRAVPTSKGQALADEY-----GIKFFETVMQRQI 164 (164)
Q Consensus 134 ~~-----~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~g~ 164 (164)
.. ......+++..+.... +++++.+||.+|+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ 199 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGD 199 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCC
Confidence 21 1122234445554443 3679999999884
No 240
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.3e-15 Score=100.12 Aligned_cols=118 Identities=21% Similarity=0.367 Sum_probs=94.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
+.-|++++|-.++|||||++.|-++...+. .||.-.+ ...+.+.+ ..++-+|.+|+..-+..|..|+..+|.+++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-CCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 456899999999999999999988654432 2222222 23344444 678899999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESK 136 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~ 136 (164)
.+|+.+.+.|.+.+..++.+..... ..+|+++.+||+|.+.+.
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 9999999999999988887755442 489999999999997544
No 241
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.65 E-value=5.2e-15 Score=104.88 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=70.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCccccee-----------------------eeEEEEEEE-------------EEC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTI-----------------------GIDFKIRTI-------------ELD 60 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~ 60 (164)
||+++|+.++|||||+++|..+.+........ +.+.....+ ...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999998765543211100 000000000 001
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcc--cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.....+.+.|+||+..|.......+. .+|++++|+|+.....- ....++..+... ++|+++|+||+|+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~---~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL---NIPVFVVVTKIDLA 151 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 11357899999999887654443343 68999999998764221 122233333322 68899999999985
No 242
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.3e-15 Score=113.81 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=107.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-EEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+.+=|+++|+-..|||||+..+............++..+..+.+..+. ..-.+.|.|||||+.|..++..-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999999888777777777777777777752 2337999999999999999999999999999
Q ss_pred EEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC---------CcEEEEec
Q 031201 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG---------IKFFETVM 160 (164)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa 160 (164)
+|+++.+ |++. +.+......++|+++.+||+|.++.. .+....-..+++ ..++.+||
T Consensus 84 LVVa~dDGv~pQTi-------EAI~hak~a~vP~iVAiNKiDk~~~n----p~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 84 LVVAADDGVMPQTI-------EAINHAKAAGVPIVVAINKIDKPEAN----PDKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred EEEEccCCcchhHH-------HHHHHHHHCCCCEEEEEecccCCCCC----HHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 9999997 4444 33333334489999999999987322 222222222222 57899999
Q ss_pred cCCC
Q 031201 161 QRQI 164 (164)
Q Consensus 161 ~~g~ 164 (164)
++|+
T Consensus 153 ~tg~ 156 (509)
T COG0532 153 KTGE 156 (509)
T ss_pred cCCC
Confidence 9986
No 243
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.65 E-value=2.2e-15 Score=118.38 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=80.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC--CCC------------------cccceeeeEEEEEEEEECCEEEEEEEee
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d 70 (164)
...+..+|+|+|.+++|||||+++|+... ... ......++++......++...+.+.|||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 34567899999999999999999985411 100 0011112333333334444457899999
Q ss_pred CCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
+||+..|.......+..+|++|+|+|+++.-. .....+++.... .++|+++++||+|+..
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 99998887766777899999999999986311 122334443332 3689999999999863
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=3e-15 Score=117.57 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=79.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC--CC---------------c---ccceeeeEEEEEEEEECCEEEEEEEeeC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF--TT---------------S---FITTIGIDFKIRTIELDGKRIKLQIWDT 71 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 71 (164)
.....+|+|+|+.++|||||.++|+...- .. . .....++++......++...+.+.+||+
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 35678999999999999999999964111 00 0 0011122233332333333478999999
Q ss_pred CCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
||+..|.......+..+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 99998888777788999999999999864211 22333333322 3789999999999864
No 245
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=2.1e-15 Score=121.37 Aligned_cols=149 Identities=20% Similarity=0.168 Sum_probs=90.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc---------------------------------ccceeeeEEEEEEE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTI 57 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 57 (164)
.....++|+++|++++|||||+++|+...-... .....+++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345668999999999999999999987432111 00111112222222
Q ss_pred EECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 58 ~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
.. ...++.|+|+||++.|.......+..+|++++|+|+.....- ........+... . ..++++++||+|+.+...
T Consensus 100 ~~--~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 AT--PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred cc--CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh-C-CCeEEEEEEecccccchh
Confidence 22 335788999999988766555567899999999998753211 111111222222 1 357889999999963121
Q ss_pred cc---chHHHHHHHHHhCC---cEEEEeccCCC
Q 031201 138 AV---PTSKGQALADEYGI---KFFETVMQRQI 164 (164)
Q Consensus 138 ~~---~~~~~~~~~~~~~~---~~~~~Sa~~g~ 164 (164)
.. ..++..++.+..++ +++.+||++|+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ 207 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGD 207 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCC
Confidence 11 12233444455554 69999999984
No 246
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=1.2e-15 Score=123.75 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=83.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-------------Ccc-----cceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------TSF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
.+...+|+|+|..++|||||+++|+...-. ..+ ....++......+..+ .+.+++||+||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCC
Confidence 456789999999999999999999753210 000 0111122222233333 47899999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
+..+...+..+++.+|++|+|+|.++.........| ..+.. .++|+++++||+|+...+
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGAD 141 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCCC
Confidence 999988888899999999999999886555443333 33322 268999999999987543
No 247
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=7.5e-15 Score=100.21 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=83.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC----------ccccch
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRT 79 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~ 79 (164)
-+......|+++|.+++|||||+|+|+++.-......+.+.+.....+.+++ .+.+.|.|| .+.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHH
Confidence 4556778999999999999999999999775444455555556666667777 489999999 334455
Q ss_pred hhhhhcc---cccEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 80 ITTAYYR---GAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 80 ~~~~~~~---~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
+...|+. +...+++++|+..+-. -.++-.|+... ++|+++++||+|..
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~------~i~~~vv~tK~DKi 148 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL------GIPVIVVLTKADKL 148 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEccccC
Confidence 5566665 3567888999877432 22333344433 89999999999975
No 248
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.8e-15 Score=113.55 Aligned_cols=150 Identities=21% Similarity=0.198 Sum_probs=111.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC-----------C--cccceeeeEEEEEEE---EECCEEEEEEEeeCCCc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-----------T--SFITTIGIDFKIRTI---ELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------~--~~~~~~~~~~~~~~~---~~~~~~~~~~l~d~~g~ 74 (164)
+.++.-++.|+-.-..|||||..+|+...-. . +.....++++..++. ..++..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 3488889999999999999999998663210 0 111233344433332 23577799999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCc
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 154 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (164)
-.|.......+..|+++|+|+|++.--.-+.+..++..+.. +..+|.|+||+|++.+.......+..++......+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999888899999999999999875444455555555544 67799999999998665555556666666666779
Q ss_pred EEEEeccCCC
Q 031201 155 FFETVMQRQI 164 (164)
Q Consensus 155 ~~~~Sa~~g~ 164 (164)
...+|||+|.
T Consensus 212 ~i~vSAK~G~ 221 (650)
T KOG0462|consen 212 VIYVSAKTGL 221 (650)
T ss_pred eEEEEeccCc
Confidence 9999999984
No 249
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.63 E-value=9.2e-15 Score=101.85 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=67.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeee---EEEEEEEEECCEEEEEEEeeCCCccccchh-----hhhhcc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGI---DFKIRTIELDGKRIKLQIWDTAGQERFRTI-----TTAYYR 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-----~~~~~~ 86 (164)
.+||+++|.+|+|||||+|.|++...........+. +.....+... ....+.+||+||....... ....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986554322221111 1111111111 1236899999996432221 222356
Q ss_pred cccEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
++|+++++.+. ++..... +++.+... +.|+++|+||+|+.
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 78888887432 2333333 55555443 57899999999983
No 250
>PLN03127 Elongation factor Tu; Provisional
Probab=99.63 E-value=1.1e-14 Score=112.41 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=90.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC------C----------CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG------S----------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
.....++|+++|..++|||||+++|.+. . ..++..+..+ .......++....++.|.|+||+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiT--i~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGIT--IATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCce--eeeeEEEEcCCCeEEEEEECCCc
Confidence 4567799999999999999999999731 1 0111222233 33334444444568999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cchHHHHHHHHHh
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRA--VPTSKGQALADEY 151 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 151 (164)
..|.......+..+|++++|+|+.....- .....+..+... ++| +++++||+|+.+.... ...++..++....
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88766555566789999999998753211 112222333222 577 5788999999631110 1112333443332
Q ss_pred -----CCcEEEEeccC
Q 031201 152 -----GIKFFETVMQR 162 (164)
Q Consensus 152 -----~~~~~~~Sa~~ 162 (164)
.+|++.+||.+
T Consensus 211 ~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 211 KFPGDEIPIIRGSALS 226 (447)
T ss_pred CCCCCcceEEEeccce
Confidence 36889998864
No 251
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=1e-14 Score=110.08 Aligned_cols=135 Identities=20% Similarity=0.160 Sum_probs=87.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc--h-------hhhhhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-------ITTAYY 85 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--~-------~~~~~~ 85 (164)
..|+|+|.|++|||||+|+|+++...- ...+..+-+.-.......+ ..+.+.||+|.+... . ....-+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 579999999999999999999976432 2223333333334445544 469999999965322 1 123346
Q ss_pred ccccEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccC
Q 031201 86 RGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQR 162 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (164)
..+|++|||+|.... ..-+.+.+++. ..+.|+++|+||+|-.. ..+...+| -++|+ +++.+||..
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~-----~e~~~~ef-yslG~g~~~~ISA~H 149 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK-----AEELAYEF-YSLGFGEPVPISAEH 149 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch-----hhhhHHHH-HhcCCCCceEeehhh
Confidence 789999999998762 22223333333 22689999999999641 11223334 34565 789999987
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|.
T Consensus 150 g~ 151 (444)
T COG1160 150 GR 151 (444)
T ss_pred cc
Confidence 63
No 252
>PRK12739 elongation factor G; Reviewed
Probab=99.60 E-value=1.7e-14 Score=117.14 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=82.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC------------------CcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
.++..+|+|+|..++|||||+++|+...-. .......+++.....+..++ .++.|+||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 456889999999999999999999752110 01122333334444455544 6899999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
+..+...+...+..+|++|+|+|+...-.-++ ...+..+.. .+.|.++++||+|+...
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 98887778888999999999999886432222 122232322 26889999999999743
No 253
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=3.8e-14 Score=102.90 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=81.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc--ccch---h----
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRT---I---- 80 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--~~~~---~---- 80 (164)
.-......|+|.|+||+|||||++.+++.+......|..+.....-.+...+ .++++.||||-- .... +
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHH
Confidence 3445778899999999999999999999776655555444444444444433 589999999931 1111 1
Q ss_pred hhhhcccccEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 81 TTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
....-.-.++++|+||.+.... .+.=..++..+..... .|+++|.||+|+.+
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~ 294 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccc
Confidence 1112224678999999886443 3333345666655544 78999999999873
No 254
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.7e-14 Score=110.68 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=107.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
-.++..-|-|+|.-..|||||+.+|.+...-......++..+-...+..+.. -.++|.||||+..|..|+..-..-.|+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccE
Confidence 3456677899999999999999999998776666666655555555655533 589999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh---------CCcEEEEecc
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---------GIKFFETVMQ 161 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~ 161 (164)
+++|+.+.|- -+.+.++.+......++|+++.+||+|.+++. .+.+++-...+ +...+++||+
T Consensus 228 vVLVVAadDG----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~----pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 228 VVLVVAADDG----VMPQTLEAIKHAKSANVPIVVAINKIDKPGAN----PEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEEEccCC----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC----HHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 9999998873 11123344444444589999999999987432 23333333333 2578999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 300 ~g~ 302 (683)
T KOG1145|consen 300 TGE 302 (683)
T ss_pred cCC
Confidence 985
No 255
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=104.12 Aligned_cols=144 Identities=26% Similarity=0.166 Sum_probs=91.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCc----------cccchh-h
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI-T 81 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~----------~~~~~~-~ 81 (164)
..+||+|+|.|++|||||+|+|++....- ...+..+.+.-...+..++ ..+.+.||.|- +.|+.. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 67999999999999999999999966432 2223333333344455556 46899999992 223222 2
Q ss_pred hhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHH----HHHHHHh-CCcEE
Q 031201 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG----QALADEY-GIKFF 156 (164)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~-~~~~~ 156 (164)
..-+..++++++|+|++.+-+-+..+ ..-.+. ..+.++++|+||-|+.+. .....++. ....... .++.+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~---~~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIE---EAGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHH---HcCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEE
Confidence 23466899999999999865543321 112222 237789999999998743 22222222 2222222 35999
Q ss_pred EEeccCCC
Q 031201 157 ETVMQRQI 164 (164)
Q Consensus 157 ~~Sa~~g~ 164 (164)
.+||++|.
T Consensus 330 ~iSA~~~~ 337 (444)
T COG1160 330 FISALTGQ 337 (444)
T ss_pred EEEecCCC
Confidence 99999873
No 256
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=2.9e-14 Score=107.85 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=106.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCC--C-----------cccceeeeEEEEEEE----EE-CCEEEEEEEeeC
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT--T-----------SFITTIGIDFKIRTI----EL-DGKRIKLQIWDT 71 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-----------~~~~~~~~~~~~~~~----~~-~~~~~~~~l~d~ 71 (164)
.+..+.-+++|+-.-..|||||..+++...-. + ......++++....+ .. +|..+.+++.||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 34567788999999999999999999663211 0 112222334433332 22 568899999999
Q ss_pred CCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh
Q 031201 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 151 (164)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (164)
|||-.|+-.....+.-|.+.++|+|++.--.-+.+...+..+.+ +.-++-|+||+||+.++..-..+++++..---
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpervk~eIe~~iGid 159 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERVKQEIEDIIGID 159 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCC
Confidence 99999988888889999999999999975555566666666655 67799999999998554444444444432222
Q ss_pred CCcEEEEeccCCC
Q 031201 152 GIKFFETVMQRQI 164 (164)
Q Consensus 152 ~~~~~~~Sa~~g~ 164 (164)
--..+.||||||.
T Consensus 160 ~~dav~~SAKtG~ 172 (603)
T COG0481 160 ASDAVLVSAKTGI 172 (603)
T ss_pred cchheeEecccCC
Confidence 2367999999985
No 257
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.58 E-value=2.9e-15 Score=96.50 Aligned_cols=110 Identities=27% Similarity=0.346 Sum_probs=77.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCccc-ceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777754433 2222 222234456778999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
|+..+.++++.+ |...+....+.++|.++++||.|+.+.. ....++... |+++|+++|
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~~~--------~~~~s~~~~ 111 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEGLE--------FAETSAKTP 111 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHHHH--------HHHHhCCCc
Confidence 999999998766 7766666556678999999999985322 443333333 445555554
No 258
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=2.8e-14 Score=116.21 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=83.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC---------------CCCCc---ccceeeeEEEEEEEEECCEEEEEEEeeCC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 72 (164)
......+|+|+|+.++|||||+++|+.. .+.+. +..|.........+..++..+.+.|||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3456789999999999999999999752 11110 11121111112223345667899999999
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchH
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 142 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (164)
|+..|.......+..+|++|+|+|+...-..+.. ..+..+. ..+.|.++++||+|..........+
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~---~~~~p~ivviNKiD~~~~~~~~~~~ 160 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL---KENVKPVLFINKVDRLINELKLTPQ 160 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH---HcCCCEEEEEEChhcccchhcCCHH
Confidence 9998887778889999999999998763221111 1122221 2257788999999986443333333
No 259
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.57 E-value=1e-13 Score=102.71 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=55.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC------cccceeeeEEEEEE---------------EEECC-EEEEEEEeeCCCc-
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSFTT------SFITTIGIDFKIRT---------------IELDG-KRIKLQIWDTAGQ- 74 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~l~d~~g~- 74 (164)
|+++|.+++|||||+|++++..... ...+..+..+.... ...++ ..+++++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999976532 22333332221110 11223 3378999999996
Q ss_pred ---cccchhhhhh---cccccEEEEEEECC
Q 031201 75 ---ERFRTITTAY---YRGAMGILLVYDVT 98 (164)
Q Consensus 75 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 98 (164)
+.+..+...+ ++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4444444444 88999999999997
No 260
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.57 E-value=2.3e-14 Score=110.77 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=93.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCC---CCcccceeeeEEEEEEE---------------EECC-----------
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTI---------------ELDG----------- 61 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 61 (164)
.++..++|.++|.-.+|||||+.+|++... .++.....+++.-.... ..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 457889999999999999999999997432 22322222221111100 0000
Q ss_pred -----EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 62 -----KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 62 -----~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
....+.|.|+||++.|.......+..+|.+++|+|+.....-......+..+... . -.++++++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-K-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-C-CCcEEEEEecccccCHH
Confidence 0247899999999988776666778999999999998631111112222222222 1 24689999999996322
Q ss_pred C-ccchHHHHHHHHH---hCCcEEEEeccCCC
Q 031201 137 R-AVPTSKGQALADE---YGIKFFETVMQRQI 164 (164)
Q Consensus 137 ~-~~~~~~~~~~~~~---~~~~~~~~Sa~~g~ 164 (164)
. ....++++++.+. .+.+++.+||++|+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~ 219 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKY 219 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCC
Confidence 1 1123334444433 25699999999985
No 261
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=3.3e-14 Score=115.38 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=90.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC------------------CcccceeeeEEEEEEEEECCEEEEEEEeeCC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 72 (164)
..++..+|+|+|..++|||||+++|+...-. .......+++.....+..++ ..+.|.|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 4567889999999999999999999742110 00122233333344444444 689999999
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 152 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (164)
|+..|.......+..+|++|+|+|+...-.-++ ...+..+... +.|.++++||+|+.+... .....++.+..+
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~~---~~~~~~i~~~l~ 156 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGADF---YRVVEQIKDRLG 156 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCCH---HHHHHHHHHHhC
Confidence 998776666667888999999999875422222 2222223222 678899999999874331 122233333333
Q ss_pred C----cEEEEeccCC
Q 031201 153 I----KFFETVMQRQ 163 (164)
Q Consensus 153 ~----~~~~~Sa~~g 163 (164)
. ..+.+|+..|
T Consensus 157 ~~~~~~~ipisa~~~ 171 (693)
T PRK00007 157 ANPVPIQLPIGAEDD 171 (693)
T ss_pred CCeeeEEecCccCCc
Confidence 2 3456666554
No 262
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.54 E-value=2.6e-13 Score=104.77 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=113.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.+.....+++.++|+.++|||.+++.+.++.+...+..+....+....+...+....+.+-|.+-. ....+... -..|
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k-e~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK-EAAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc-ccee
Confidence 455678899999999999999999999999888766666665666666666677778888888764 22222211 2789
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEecc
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQ 161 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (164)
|++.++||.+++.+|+.+...++.-... ...|+++|++|+|+.+..+....+. .++++++++ +....|.+
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSK 567 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccC
Confidence 9999999999999998887776666554 4799999999999975554555555 899999998 44555655
No 263
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=100.61 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=89.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-------hhhhhcc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYR 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-------~~~~~~~ 86 (164)
...|.++|.|++|||||++.+.+.+-.. .|..| +..-..-.+...+ .-.+.+-|.||.-+-.+ ..-..++
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFT-TL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFT-TLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccc-cccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 4567899999999999999999865433 33322 2111111222222 23799999999432221 1233466
Q ss_pred cccEEEEEEECCChH---HHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC--cEEEEe
Q 031201 87 GAMGILLVYDVTDES---SFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--KFFETV 159 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~S 159 (164)
.+.+++.|+|++..+ -.+....+..+|..+.+ .+.|.+||+||+|+. ...+......+.+.+..+. .++ +|
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~-~~~e~~~~~~~~l~~~~~~~~~~~-IS 314 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP-LDEEELEELKKALAEALGWEVFYL-IS 314 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC-cCHHHHHHHHHHHHHhcCCCccee-ee
Confidence 899999999998643 35555556666655433 378999999999976 2222223334444444444 233 99
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|.+++
T Consensus 315 a~t~~ 319 (369)
T COG0536 315 ALTRE 319 (369)
T ss_pred hhccc
Confidence 98863
No 264
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.7e-13 Score=101.25 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=100.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC--CCC---------------------------cccceeeeEEEEEEEEECCE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT---------------------------SFITTIGIDFKIRTIELDGK 62 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 62 (164)
.+..++++++|+..+|||||+-+|+... +++ ......+.++......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4667999999999999999999985521 110 11122234455555566666
Q ss_pred EEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH---HHHHHHHHHH--HHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIR--NIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
.+.+.|.|+||+..|..........+|..|+|+|+.+.+ .|...-+..+ .|....+ -..+++++||+|+.+ ..
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~-wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS-WD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc-cC
Confidence 678999999998888887777888999999999998752 2321112222 2222222 345788899999973 33
Q ss_pred ccchHH----HHHHHHHhC-----CcEEEEeccCCC
Q 031201 138 AVPTSK----GQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 138 ~~~~~~----~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
+...++ ...+.+..+ ++|+.+|+-+|+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~ 197 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGD 197 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCC
Confidence 333333 344444444 579999999885
No 265
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.50 E-value=9.4e-13 Score=91.65 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=80.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCccc--ceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-----------hhh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT 82 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-----------~~~ 82 (164)
++|+++|.+|+|||||+|.+++........ +..+.+........++ .++.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999976543321 1122222333334444 5799999999543211 111
Q ss_pred hhcccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCC-c----cchHHHHHHHHHhCCc
Q 031201 83 AYYRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKR-A----VPTSKGQALADEYGIK 154 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~ 154 (164)
....+.|++++|+++.+. +.... .++.+....+. -.++++|.|+.|...... . ......+.+.+..+-.
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~---~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQ---AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHH---HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 224578999999998862 12222 33333332221 246888899988542211 0 0123345555555555
Q ss_pred EEEEec
Q 031201 155 FFETVM 160 (164)
Q Consensus 155 ~~~~Sa 160 (164)
|+..+.
T Consensus 156 ~~~f~~ 161 (196)
T cd01852 156 YVAFNN 161 (196)
T ss_pred EEEEeC
Confidence 544443
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.48 E-value=1.9e-12 Score=98.67 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=54.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceee--eEEEEEEE-------------------EECC-EEEEEEEeeCCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-------------------ELDG-KRIKLQIWDTAG 73 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--~~~~~~~~-------------------~~~~-~~~~~~l~d~~g 73 (164)
++|+++|.+++|||||+|+|++........+..+ .......+ ..++ ...++++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998766432222111 11111111 0111 236799999999
Q ss_pred c----cccchhhhhh---cccccEEEEEEECC
Q 031201 74 Q----ERFRTITTAY---YRGAMGILLVYDVT 98 (164)
Q Consensus 74 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 98 (164)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333444455 78999999999996
No 267
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=1.8e-12 Score=93.14 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=73.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc-cceeeeEEEEEEEEECCEEEEEEEeeCCCccccc--h------
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T------ 79 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--~------ 79 (164)
++.....++|+|+|.+|+|||||+|+|++....... ....+..........++ ..+.+|||||..... .
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHH
Confidence 456678899999999999999999999997643321 11122222223334444 578999999955331 0
Q ss_pred --hhhhhcc--cccEEEEEEECCChH-HHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 031201 80 --ITTAYYR--GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASD--NVNKVLVGNKADMD 133 (164)
Q Consensus 80 --~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~ 133 (164)
....+++ ..+++++|..++... ... -...++.+....+. -.++++|.||+|..
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 1122333 567788877665431 121 11344444433221 25689999999974
No 268
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.47 E-value=3.6e-12 Score=92.63 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=62.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-------hhhh
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTA 83 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-------~~~~ 83 (164)
.+.--..++++|+|++|||||++.|++..-.....+..+.+.-.-.+.+++ .++++.|+||.-.-.+ ..-.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 345567899999999999999999999665443333333334444455655 7899999998432221 1233
Q ss_pred hcccccEEEEEEECCChHH
Q 031201 84 YYRGAMGILLVYDVTDESS 102 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~s 102 (164)
..++||.+++|+|+....+
T Consensus 137 v~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 137 VARNADLIIIVLDVFEDPH 155 (365)
T ss_pred eeccCCEEEEEEecCCChh
Confidence 5679999999999986543
No 269
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=4.4e-12 Score=92.90 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=71.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh-------
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------- 80 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~------- 80 (164)
++.....++|+++|.+|+||||++|+|++..... ....+.+..........++ ..+.++||||.......
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 4456788999999999999999999999876422 1111111111122233344 68999999996543211
Q ss_pred hhhhc--ccccEEEEEEECCChHHHHHH-HHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 031201 81 TTAYY--RGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASD--NVNKVLVGNKADMD 133 (164)
Q Consensus 81 ~~~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~p~ivv~nK~Dl~ 133 (164)
...++ ...|++++|..++... +... ...++.+....+. -.+.+|+.|+.|..
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 12222 2588999996654321 1111 1233333333221 24689999999965
No 270
>PTZ00258 GTP-binding protein; Provisional
Probab=99.45 E-value=3.5e-12 Score=96.49 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCE---------------EEEEEEeeCCC
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAG 73 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g 73 (164)
-+.....++|+|+|.|++|||||+|+|++........+..+.+.....+.+.+. ..++.+.|+||
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 345577789999999999999999999887654433333333333333333322 13589999999
Q ss_pred ccccc----hh---hhhhcccccEEEEEEECC
Q 031201 74 QERFR----TI---TTAYYRGAMGILLVYDVT 98 (164)
Q Consensus 74 ~~~~~----~~---~~~~~~~~~~~i~v~d~~ 98 (164)
-..-. .+ .-..++++|++++|+|+.
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 43211 11 222457899999999973
No 271
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.44 E-value=1.6e-12 Score=107.52 Aligned_cols=120 Identities=21% Similarity=0.199 Sum_probs=81.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCC----------------CcccceeeeEEEEEEEEE--------------
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIEL-------------- 59 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~-------------- 59 (164)
+..++..+|+|+|+.++|||||+++|+...-. .+.....+++.....+.+
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 45677889999999999999999999764311 111111122221222222
Q ss_pred CCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 60 ~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
++..+.+.|+|+||+..|.......+..+|++|+|+|+...-..... ..+..+. ..++|+++++||+|..
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHH---HCCCCEEEEEECCccc
Confidence 12357889999999999988777788999999999998864332222 2222222 2378999999999986
No 272
>PRK09866 hypothetical protein; Provisional
Probab=99.43 E-value=6.5e-12 Score=99.12 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=61.4
Q ss_pred EEEEeeCCCcccc-----chhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 031201 65 KLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV 139 (164)
Q Consensus 65 ~~~l~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (164)
++.|.||||.... .......+.++|++++|+|....-+..+ ..+.+.+....+ ..|+++|+||+|+.+ ....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K-~~PVILVVNKIDl~d-reed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ-SVPLYVLVNKFDQQD-RNSD 307 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC-CCCEEEEEEcccCCC-cccc
Confidence 6889999996532 2234457889999999999987433222 123344433322 369999999999862 2222
Q ss_pred chHHHHHHHHHh----C---CcEEEEeccCCC
Q 031201 140 PTSKGQALADEY----G---IKFFETVMQRQI 164 (164)
Q Consensus 140 ~~~~~~~~~~~~----~---~~~~~~Sa~~g~ 164 (164)
..+....+.... + ..+|.+||++|.
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~ 339 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGY 339 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Confidence 345555554322 2 269999999884
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.43 E-value=2.7e-12 Score=106.91 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=73.7
Q ss_pred cHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEE-----------E-----EEEEeeCCCccccchhhhhhcccccE
Q 031201 27 GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-----------I-----KLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 27 GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
+||||+.++.+..........++..+-...+..+... . .+.||||||++.|..+.......+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 3999999999988776666666555544444443110 1 28999999999998888878889999
Q ss_pred EEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 91 ILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 91 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
+++|+|+++ +++++.+. .+.. .++|+++++||+|+.
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCc
Confidence 999999986 55555443 2222 268999999999995
No 274
>PRK12740 elongation factor G; Reviewed
Probab=99.43 E-value=1.2e-12 Score=106.17 Aligned_cols=124 Identities=23% Similarity=0.217 Sum_probs=81.1
Q ss_pred EcCCCCcHHHHHHHHhcCCCC------------------CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhh
Q 031201 21 IGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (164)
Q Consensus 21 ~G~~~~GKssl~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~ 82 (164)
+|+.++|||||+++|+...-. ....+..++......+..++ +.+.+||+||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999553211 01122223333334444444 7899999999988877788
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (164)
..+..+|++++|+|.+..........| ..+.. .+.|+++|+||+|+.... ..+...++.+..+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~~~---~~~~~~~l~~~l~~ 142 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAGAD---FFRVLAQLQEKLGA 142 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCCCC---HHHHHHHHHHHHCC
Confidence 888999999999999876554433222 22322 268999999999987422 22334444444443
No 275
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=6.5e-13 Score=100.94 Aligned_cols=120 Identities=24% Similarity=0.258 Sum_probs=79.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-cch--------hhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRT--------ITT 82 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~--------~~~ 82 (164)
+..++|+|+|+||+|||||+|.|.+....- ...+..+-|--...++++| +++.|.||.|..+ -.+ .-.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 445899999999999999999999976543 2223333333344556666 7899999999654 111 123
Q ss_pred hhcccccEEEEEEECC--ChHHHHHHHHHHHHHHHhc------CCCCcEEEEEeCCCCCC
Q 031201 83 AYYRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHA------SDNVNKVLVGNKADMDE 134 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~------~~~~p~ivv~nK~Dl~~ 134 (164)
..++.+|++++|+|+. .-++-..+...++....-. ..+.|++++.||.|+..
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS 403 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence 4567899999999993 3223233333444432211 12478999999999963
No 276
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.43 E-value=2.2e-12 Score=95.93 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=56.1
Q ss_pred EEEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCC
Q 031201 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKVLVGNKAD 131 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 131 (164)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. +.+.+....++.+.+.. -.+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46799999999999999999999999999999999873 44555555444443322 25799999999999
Q ss_pred CC
Q 031201 132 MD 133 (164)
Q Consensus 132 l~ 133 (164)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 63
No 277
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.42 E-value=4e-12 Score=98.36 Aligned_cols=148 Identities=16% Similarity=0.320 Sum_probs=99.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC--CEEEEEEEeeCCCccccchhhhhhccc---
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRG--- 87 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~d~~g~~~~~~~~~~~~~~--- 87 (164)
...-.|+|+|..++|||||+.+|.+... +.++.+.+|....+.-+ +...++.+|...|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 4456899999999999999999987543 33445555554444322 234579999999877777766555543
Q ss_pred -ccEEEEEEECCChHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Q 031201 88 -AMGILLVYDVTDESS-FNNIRNWIRNIEQHAS----------------------------------------------- 118 (164)
Q Consensus 88 -~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 118 (164)
--++|+|.|.+.|.. ++.+..|+..+..+..
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 235888999999865 3455544433221100
Q ss_pred C---------------CCcEEEEEeCCCCCC----------CCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 119 D---------------NVNKVLVGNKADMDE----------SKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 119 ~---------------~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
. ++|++||++|+|.-. +......+..+.||-++|+.++.+|++..
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~ 249 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEE 249 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccc
Confidence 0 379999999999631 11113445578899999999999998753
No 278
>PTZ00416 elongation factor 2; Provisional
Probab=99.42 E-value=2.9e-12 Score=105.85 Aligned_cols=118 Identities=21% Similarity=0.204 Sum_probs=78.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC--C--------------cccceeeeEEEEEEEEEC--------CEEEEEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQ 67 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (164)
.+...+|+|+|+.++|||||+++|+...-. . +.....++......+.++ +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 456679999999999999999999863211 0 111111111111222222 2256899
Q ss_pred EeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 68 l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
|.|+||+..|.......++.+|++|+|+|+...-.... ...+..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999999888777778899999999999887322211 122233322 267899999999986
No 279
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=4e-13 Score=95.64 Aligned_cols=118 Identities=23% Similarity=0.354 Sum_probs=79.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEE-EECCEEEEEEEeeCCCcc-------ccchhhhh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQE-------RFRTITTA 83 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~d~~g~~-------~~~~~~~~ 83 (164)
....++|+++|..|+||||++|+|+.+...+...-..+.+...+.+ .+++ -.+.|||+||-. +++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 5678999999999999999999999755544332222222222222 2333 369999999943 36677788
Q ss_pred hcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
++...|.++++.+..+++---.. .++..+....- +.++++++|.+|..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a 161 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRA 161 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhh
Confidence 88899999999999987532122 23333322222 47899999999975
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.42 E-value=1.9e-12 Score=97.95 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=105.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCC--CCC------------cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGS--FTT------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~ 79 (164)
..-+|+|+-.-..|||||+..|+.+. |.. ......++++..+...++-..+.+.|.||||+..|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999997742 211 1223335666666654444448999999999999999
Q ss_pred hhhhhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh-----
Q 031201 80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY----- 151 (164)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----- 151 (164)
.....++..|.+++++|+.. |++ +..++.. ...+.+-|||+||+|-+.+......++..++....
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT----rFVlkKA---l~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT----RFVLKKA---LALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch----hhhHHHH---HHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence 99999999999999999987 322 1112222 22266778999999998665555677777776665
Q ss_pred --CCcEEEEeccCCC
Q 031201 152 --GIKFFETVMQRQI 164 (164)
Q Consensus 152 --~~~~~~~Sa~~g~ 164 (164)
++|++..|++.|.
T Consensus 157 QLdFPivYAS~~~G~ 171 (603)
T COG1217 157 QLDFPIVYASARNGT 171 (603)
T ss_pred hCCCcEEEeeccCce
Confidence 4799999999873
No 281
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=1.6e-12 Score=106.18 Aligned_cols=122 Identities=22% Similarity=0.216 Sum_probs=79.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc----------------ccceeeeEEEEEEE--EECCEEEEEEEeeCC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------------FITTIGIDFKIRTI--ELDGKRIKLQIWDTA 72 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~~~~~l~d~~ 72 (164)
..++..+|+|+|+.++|||||+++|+...-... .....+++.....+ ..++..+.+.|+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 346678999999999999999999976321100 01111111111122 234456789999999
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
|+..|.......+..+|++|+|+|+...-..+ ....+...... +.|.++++||+|....+
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~~~~ 155 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRLIKE 155 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhhccc
Confidence 99998877788889999999999987632221 22222222222 45778999999986433
No 282
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.41 E-value=2.7e-12 Score=96.31 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=55.6
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh----------HHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCC
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM 132 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl 132 (164)
+.+.+||.+|+...+..|..++.+++++|+|+|+++- +.+.+....++.+.+. .-.+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5689999999999999999999999999999999963 3455555555554432 2257999999999997
Q ss_pred C
Q 031201 133 D 133 (164)
Q Consensus 133 ~ 133 (164)
.
T Consensus 264 ~ 264 (342)
T smart00275 264 F 264 (342)
T ss_pred H
Confidence 3
No 283
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.8e-12 Score=88.97 Aligned_cols=114 Identities=21% Similarity=0.319 Sum_probs=80.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcc---cccEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL 92 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~---~~~~~i 92 (164)
-.|+++|+.+||||+|+-.|..+.......+ ++-....+..... .+++.|.||+.+.+.-...+++ .+.+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 5799999999999999999988754433322 1122333333332 3899999999998887777777 789999
Q ss_pred EEEECCC-hHHHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCCCCC
Q 031201 93 LVYDVTD-ESSFNNIRN-WIRNIEQH--ASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 93 ~v~d~~~-~~s~~~~~~-~~~~~~~~--~~~~~p~ivv~nK~Dl~~ 134 (164)
||+|..- .....++.. ++..+... ....+|++++.||.|+..
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 9999753 334445555 44444444 345799999999999963
No 284
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.41 E-value=1.2e-11 Score=92.61 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=53.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEE---------------EEEEEeeCCCccccc--
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR-- 78 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~d~~g~~~~~-- 78 (164)
++|+++|.|++|||||+|+|++........+..+.+...-.+.+.+.+ .++.+.|+||-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999976433322333322332233333321 258999999943211
Q ss_pred --hh---hhhhcccccEEEEEEECC
Q 031201 79 --TI---TTAYYRGAMGILLVYDVT 98 (164)
Q Consensus 79 --~~---~~~~~~~~~~~i~v~d~~ 98 (164)
.+ .-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 222357899999999984
No 285
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.40 E-value=3.9e-12 Score=92.54 Aligned_cols=151 Identities=14% Similarity=0.299 Sum_probs=103.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC--CEEEEEEEeeCCCccccchhhhhhcc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYR 86 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~d~~g~~~~~~~~~~~~~ 86 (164)
+..-+..-+|+|+|..++|||||+.+|.+..... +..+.+|....+.-+ +...++.+|-..|+.....+....+.
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~~K---kgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ 122 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVK---KGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP 122 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhcccccC---CCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence 3444567789999999999999999999966322 222344444443222 23468899999997655555444333
Q ss_pred c----ccEEEEEEECCChHH-HHHHHHHHHHHHHhcCC------------------------------------------
Q 031201 87 G----AMGILLVYDVTDESS-FNNIRNWIRNIEQHASD------------------------------------------ 119 (164)
Q Consensus 87 ~----~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~------------------------------------------ 119 (164)
. --++|++.|+++|.. ++.+.+|...+.++...
T Consensus 123 ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~ 202 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS 202 (473)
T ss_pred ccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence 2 246899999999954 56666676555433211
Q ss_pred -------------------CCcEEEEEeCCCCC----------CCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 120 -------------------NVNKVLVGNKADMD----------ESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 120 -------------------~~p~ivv~nK~Dl~----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
++|++||.||+|+. ++........+++||-++|+.++.+|+|.
T Consensus 203 ~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE 274 (473)
T KOG3905|consen 203 SADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKE 274 (473)
T ss_pred ccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccc
Confidence 58999999999972 12233455668999999999999999985
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=7.2e-12 Score=89.01 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=81.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
......|+++|++|+|||||++.+.+...........+. + .+. .....++.++|+||.. .. .....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~-~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVV-TGKKRRLTFIECPNDI--NA-MIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEE-ecCCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence 455678999999999999999999874221111111110 1 111 1234578999999854 22 22346789999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCc--cchHHHHH-HHHHh--CCcEEEEeccCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDESKRA--VPTSKGQA-LADEY--GIKFFETVMQRQ 163 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~--~~~~~~~~-~~~~~--~~~~~~~Sa~~g 163 (164)
++++|.+....... ..++..+... +.|. ++|+||.|+.+.... ...+++++ +..+. +.+++.+||++.
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 99999875332211 2233333332 4564 559999998632111 11122222 33222 458999998864
No 287
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.40 E-value=3.7e-12 Score=93.01 Aligned_cols=115 Identities=21% Similarity=0.336 Sum_probs=67.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc----------cceeeeEEEEEEEEECCEEEEEEEeeCCCccc-------
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------- 76 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~------- 76 (164)
..++|+|+|.+|+|||||+|.|++....... ..+..+......+.-++..+.+.++||||-..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4789999999999999999999996544331 12233333444455578889999999999210
Q ss_pred -----------cchhh-------hhhc--ccccEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 77 -----------FRTIT-------TAYY--RGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 77 -----------~~~~~-------~~~~--~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
|.... +... ...|+|++.++.+.. .+..+. ..++.+ ...+++|-|+.|+|.-
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L----s~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL----SKRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH----TTTSEEEEEESTGGGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh----cccccEEeEEeccccc
Confidence 11000 0111 246889999886542 111111 123333 2268899999999963
No 288
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=8.3e-12 Score=96.60 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=105.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCC-----------------------------CCcccceeeeEEEEEEEEEC
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF-----------------------------TTSFITTIGIDFKIRTIELD 60 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (164)
......+.++++|.-.+|||||+-+++..-- .....+..+++.......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 4556889999999999999999998854210 01223334455666666677
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCC---hHHHH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD---ESSFN---NIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
..+..++|.|+||+..|..........+|..|+|+|++- +..|+ .++.....++... -..++|++||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V- 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLV- 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccccc-
Confidence 777899999999998888888788889999999999875 22343 2222333333332 34578889999997
Q ss_pred CCCccchHHH----HHHH-HHh-----CCcEEEEeccCCC
Q 031201 135 SKRAVPTSKG----QALA-DEY-----GIKFFETVMQRQI 164 (164)
Q Consensus 135 ~~~~~~~~~~----~~~~-~~~-----~~~~~~~Sa~~g~ 164 (164)
...+..++++ ..|. +.. ++.|+.||+.+|+
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGE 368 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCC
Confidence 4555555554 3444 333 3589999999986
No 289
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.36 E-value=3.4e-12 Score=91.71 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=68.0
Q ss_pred cccchhhhhhcccccEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (164)
++++.+.+.+++++|.+++|||+.+++ ++..+.+|+..+.. .++|+++|+||+||.+ .+....+.+..+ +..++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~-~~~~~~~~~~~~-~~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLD-DEDMEKEQLDIY-RNIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCC-CHHHHHHHHHHH-HHCCC
Confidence 567778888999999999999999987 89999999886654 3789999999999963 333333444555 45789
Q ss_pred cEEEEeccCCC
Q 031201 154 KFFETVMQRQI 164 (164)
Q Consensus 154 ~~~~~Sa~~g~ 164 (164)
+++++||++|+
T Consensus 99 ~v~~~SAktg~ 109 (245)
T TIGR00157 99 QVLMTSSKNQD 109 (245)
T ss_pred eEEEEecCCch
Confidence 99999999984
No 290
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.32 E-value=5.4e-11 Score=87.48 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=101.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC------------C-------------------cccceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT------------T-------------------SFITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~ 60 (164)
....+|++-.|.-.-|||||+-+|+.+... . +-....++++...-..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456799999999999999999999764210 0 011122344555555556
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV- 139 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~- 139 (164)
..+..+.+-|+||+++|......-..-||+.|+++|+-.. -.+..++ ..-+....+ -..++|.+||+||.+-+.+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 6677999999999999998888888899999999998531 1222222 122222222 24578889999998533332
Q ss_pred --chHHHHHHHHHhCC---cEEEEeccCCC
Q 031201 140 --PTSKGQALADEYGI---KFFETVMQRQI 164 (164)
Q Consensus 140 --~~~~~~~~~~~~~~---~~~~~Sa~~g~ 164 (164)
..++=..|+.+.++ .++++||..|+
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GD 189 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGD 189 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCC
Confidence 23334677888875 68999999874
No 291
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=6.3e-12 Score=87.41 Aligned_cols=144 Identities=22% Similarity=0.354 Sum_probs=92.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-----hhhhhhcccc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TITTAYYRGA 88 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-----~~~~~~~~~~ 88 (164)
.-||+++|..|+|||++--.+..+-. .....++.++++......+-|. ..+.+||++|++.+- ......+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 46899999999999998776654321 1122334445555555444332 479999999988432 2345578899
Q ss_pred cEEEEEEECCChHH---HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-CCCccchHHH----HHHHHHhCCcEEEEec
Q 031201 89 MGILLVYDVTDESS---FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-SKRAVPTSKG----QALADEYGIKFFETVM 160 (164)
Q Consensus 89 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~----~~~~~~~~~~~~~~Sa 160 (164)
+.+|+|||+++.+- +....+.++.+..+.+ ...+....+|+|+.. +.+....++- ..+....++.++.+|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998643 4555566677766666 677888899999863 3333333332 3333333445565553
No 292
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.30 E-value=9e-12 Score=87.76 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=74.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCccc--ceeeeEEEEEEEEECCEEEEEEEeeCCCccccc--------hh---hh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TI---TT 82 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--------~~---~~ 82 (164)
++|+++|..|+||||++|.+++........ ...+..........++ ..+.++||||-.... .+ ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999977654432 1222233444446666 578999999932111 11 11
Q ss_pred hhcccccEEEEEEECCChH-HHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC-c-cc----hHHHHHHHHHhCCc
Q 031201 83 AYYRGAMGILLVYDVTDES-SFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKR-A-VP----TSKGQALADEYGIK 154 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~-s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~-~~----~~~~~~~~~~~~~~ 154 (164)
....+.|++++|+...... .-..+-. +...+.... -..++||.|..|...... . .. ....+++.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2345789999999988421 1112222 222222111 135788888777542222 0 00 11234555555555
Q ss_pred EEEEe
Q 031201 155 FFETV 159 (164)
Q Consensus 155 ~~~~S 159 (164)
|+...
T Consensus 157 ~~~f~ 161 (212)
T PF04548_consen 157 YHVFN 161 (212)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 65544
No 293
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=93.42 Aligned_cols=153 Identities=18% Similarity=0.137 Sum_probs=97.3
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc--ccch--h---
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRT--I--- 80 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--~~~~--~--- 80 (164)
+....+....++|+|.|++|||||+|.++.........+..+...+.-.+.+. -..+++.||||.. .... .
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEm 238 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEM 238 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHH
Confidence 34456778899999999999999999998877666555544444444444432 2578899999932 1111 1
Q ss_pred --hhhhcccccEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-CCC-ccchHHHHHHHHHhCCc
Q 031201 81 --TTAYYRGAMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDE-SKR-AVPTSKGQALADEYGIK 154 (164)
Q Consensus 81 --~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~ 154 (164)
......--.+++++.|++....+ +.=-+++..+..... +.|+|+|+||+|+-. +.- +...+........-+++
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence 11122234569999999976533 333345566655555 889999999999742 111 11223334444445589
Q ss_pred EEEEeccCC
Q 031201 155 FFETVMQRQ 163 (164)
Q Consensus 155 ~~~~Sa~~g 163 (164)
++++|+.+-
T Consensus 318 v~~tS~~~e 326 (620)
T KOG1490|consen 318 VVQTSCVQE 326 (620)
T ss_pred EEEecccch
Confidence 999998753
No 294
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.27 E-value=1.8e-11 Score=77.25 Aligned_cols=124 Identities=23% Similarity=0.243 Sum_probs=84.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc----cccchhhhhhcccccEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----ERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~----~~~~~~~~~~~~~~~~~i 92 (164)
||+++|+.|+|||||.+.+.+...... .|..+ .+++. -..|+||. ..+.+.......++|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAv-------e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAV-------EFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--cccee-------eccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999999654322 22222 22221 13488883 334444455567899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQ 163 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (164)
+|-.++++++- +-..+.... ..|+|-|++|.||++ ....+..+++..+-|. ++|++|+...
T Consensus 70 ~v~~and~~s~-----f~p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eeecccCcccc-----CCccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCc
Confidence 99999988652 112222221 456899999999983 2345667888888898 8999998753
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.27 E-value=2.3e-10 Score=86.43 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=86.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC----CCC-------------Cccc----ceeeeEE---EEEEEEE-CCEEEEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG----SFT-------------TSFI----TTIGIDF---KIRTIEL-DGKRIKLQ 67 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~----~~~-------------~~~~----~~~~~~~---~~~~~~~-~~~~~~~~ 67 (164)
.-.+-|.|+|+.++|||||+|+|.+. ... +... .|...-+ ....+.. ++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45688999999999999999999887 222 1111 1111111 1222222 45567899
Q ss_pred EeeCCCccc--------cch------h---------------hhhhcc-cccEEEEEE-ECC--C--hHHHHHHH-HHHH
Q 031201 68 IWDTAGQER--------FRT------I---------------TTAYYR-GAMGILLVY-DVT--D--ESSFNNIR-NWIR 111 (164)
Q Consensus 68 l~d~~g~~~--------~~~------~---------------~~~~~~-~~~~~i~v~-d~~--~--~~s~~~~~-~~~~ 111 (164)
+.||+|-.. ... - ....+. .+++.|+|. |.+ + ++.+.... +++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999998211 011 0 122344 688888888 654 1 22333333 3666
Q ss_pred HHHHhcCCCCcEEEEEeCCC-CCCCCCccchHHHHHHHHHhCCcEEEEecc
Q 031201 112 NIEQHASDNVNKVLVGNKAD-MDESKRAVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 112 ~~~~~~~~~~p~ivv~nK~D-l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
.+... ++|+++|.||.| ..++ ..+...++...+++|++.+|+.
T Consensus 175 eLk~~---~kPfiivlN~~dp~~~e----t~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 175 ELKEL---NKPFIILLNSTHPYHPE----TEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHhc---CCCEEEEEECcCCCCch----hHHHHHHHHHHhCCceEEEEHH
Confidence 66554 789999999999 4311 3344556777788888877763
No 296
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.27 E-value=1.7e-11 Score=92.02 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=56.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCcccc--eeeeEEEEEEEEECCEEEEEEEeeCCCccccchhh-----hhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAY 84 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~-----~~~ 84 (164)
...++|+|.|.+|+|||||+|+|.+-.- .+...+ ..+.+.....+...... .+.+||.||........ ..-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4578999999999999999999976211 111111 11111222223333222 59999999953222212 223
Q ss_pred cccccEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
+...|.+|++.+- .|..... +...+... +.|+.+|-||+|.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccc
Confidence 5578988887753 2333333 23333333 6789999999995
No 297
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-10 Score=85.36 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=86.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC-------CCCCcccceeeeEEEEEEEEE-------CCEEEEEEEeeCCCccccc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG-------SFTTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFR 78 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~d~~g~~~~~ 78 (164)
+.++++.++|.-.+|||||.+++..- .-++.....++.+.-...+.. .++..++.+.|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 45599999999999999999999652 223333333444433333332 4556789999999986443
Q ss_pred hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC-CCCCCccchH-HHHHHHHHh-----
Q 031201 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM-DESKRAVPTS-KGQALADEY----- 151 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl-~~~~~~~~~~-~~~~~~~~~----- 151 (164)
.....-..-.|..++|+|+..--.-+...- ..+.+..+ ...++|+||+|. ++..+..-.+ ..+...+-.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchh--hhhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 333333344688999999875211111111 11222222 346778888885 5444433222 233333322
Q ss_pred --CCcEEEEeccCC
Q 031201 152 --GIKFFETVMQRQ 163 (164)
Q Consensus 152 --~~~~~~~Sa~~g 163 (164)
+.|++++||+.|
T Consensus 161 ~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 161 DGNSPIVEVSAADG 174 (522)
T ss_pred CCCCceeEEecCCC
Confidence 479999999987
No 298
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.26 E-value=7.5e-11 Score=85.69 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=53.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEE---------------EEEEEeeCCCcccc----c
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF----R 78 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~d~~g~~~~----~ 78 (164)
|+++|.|++|||||+|+|++........+..+.+.....+.+.+.+ .+++++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999977644333433333333334443322 35999999994321 1
Q ss_pred hhhhh---hcccccEEEEEEECC
Q 031201 79 TITTA---YYRGAMGILLVYDVT 98 (164)
Q Consensus 79 ~~~~~---~~~~~~~~i~v~d~~ 98 (164)
.+... .++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 12222 356899999999873
No 299
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1e-10 Score=94.29 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=90.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC------------------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
.....+|.|+|+..+||||+.++++...- .+.....++++....++.+.+ .+.++|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 67888999999999999999999865211 111223333333444444443 57999999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHH
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL 147 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 147 (164)
|-.|......-++-+|++++|+|+..--..+.-.-|.+.. ..++|.++++||+|-...+.....++++..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~ 155 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGADFYLVVEQLKER 155 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccChhhhHHHHHHH
Confidence 9999999999999999999999998632222222233333 237899999999997645554444444433
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.24 E-value=1.4e-10 Score=78.55 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=44.3
Q ss_pred EEEEeeCCCccc----cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 031201 65 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130 (164)
Q Consensus 65 ~~~l~d~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (164)
.+.|+|+||... ...+...++..+|++|+|.+.+...+-.+...+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 488999999532 3356777889999999999999865544555555555444 33488888984
No 301
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=9.2e-11 Score=86.85 Aligned_cols=125 Identities=22% Similarity=0.311 Sum_probs=84.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCccc-ceeeeEEEEEEEEEC------CEEE------------------
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELD------GKRI------------------ 64 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~------------------ 64 (164)
..-....-|+++|+-.+|||||++.|+.+.++.... +..+.+++...+.-+ |...
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 455677889999999999999999999998875322 222223333322111 1100
Q ss_pred ---------------EEEEeeCCCcc-----------ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcC
Q 031201 65 ---------------KLQIWDTAGQE-----------RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS 118 (164)
Q Consensus 65 ---------------~~~l~d~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 118 (164)
++.|.|+||.- .|......|...+|.+|++||...-+--++....+..++.+
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~-- 210 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH-- 210 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--
Confidence 58999999932 34556677889999999999987655444555555555444
Q ss_pred CCCcEEEEEeCCCCCCCCC
Q 031201 119 DNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 119 ~~~p~ivv~nK~Dl~~~~~ 137 (164)
.-.+-||.||.|..+.++
T Consensus 211 -EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 -EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred -cceeEEEeccccccCHHH
Confidence 445788899999975433
No 302
>PRK13768 GTPase; Provisional
Probab=99.19 E-value=8.8e-11 Score=84.82 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=42.0
Q ss_pred EEEEeeCCCcccc---chhhhhhcc---c--ccEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 65 KLQIWDTAGQERF---RTITTAYYR---G--AMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 65 ~~~l~d~~g~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.+.+||+||+.+. +..+..+.+ . .+++++++|+.... .+... .|+....... .+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~-~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSL-LLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHH-HHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 6899999997653 333322222 2 78999999996533 32222 2222222222 378999999999986
No 303
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.19 E-value=4.3e-10 Score=78.43 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=49.9
Q ss_pred EEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcE--EEEEeCCCCCCCCCccchH
Q 031201 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--VLVGNKADMDESKRAVPTS 142 (164)
Q Consensus 65 ~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--ivv~nK~Dl~~~~~~~~~~ 142 (164)
...+.++.|......... . -++.+|.|+|+.+-++... .... ++.. ++++||+|+.+. .....+
T Consensus 93 D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~-~~~~~~ 158 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPM-VGADLG 158 (199)
T ss_pred CEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhcccc-ccccHH
Confidence 455667777322222221 1 2577999999987555221 1111 2333 899999999731 122233
Q ss_pred HHHHHHHH--hCCcEEEEeccCCC
Q 031201 143 KGQALADE--YGIKFFETVMQRQI 164 (164)
Q Consensus 143 ~~~~~~~~--~~~~~~~~Sa~~g~ 164 (164)
...+..+. .+.+++++||++|+
T Consensus 159 ~~~~~~~~~~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 159 VMERDAKKMRGEKPFIFTNLKTKE 182 (199)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCC
Confidence 34444444 35699999999985
No 304
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.17 E-value=3.1e-10 Score=83.97 Aligned_cols=141 Identities=20% Similarity=0.294 Sum_probs=84.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---- 76 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~---- 76 (164)
.+...++|+++|++|+|||||+|.|++...... ..++..+..+...+.-++-.+.+++.||||.-.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 447889999999999999999999998632221 334455555555555578888999999999211
Q ss_pred --------------cchh--------hhhhcc--cccEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCC
Q 031201 77 --------------FRTI--------TTAYYR--GAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 77 --------------~~~~--------~~~~~~--~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D 131 (164)
+... +...+. .+|+|++.+.-+. ..+..+.- ..+.+.. .+.+|-|+.|+|
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD 173 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKAD 173 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccc
Confidence 1100 010222 3567777766433 12222211 2233322 466888999999
Q ss_pred CC-CCCCccchHHHHHHHHHhCCcEE
Q 031201 132 MD-ESKRAVPTSKGQALADEYGIKFF 156 (164)
Q Consensus 132 l~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (164)
.- .++...-.+.+.+....+++++|
T Consensus 174 ~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 174 TLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 64 22333334445555555666555
No 305
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.16 E-value=7.2e-10 Score=79.11 Aligned_cols=119 Identities=15% Similarity=0.210 Sum_probs=68.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceee-----e------EEEEEEEEECC--------------------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-----I------DFKIRTIELDG-------------------- 61 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-----~------~~~~~~~~~~~-------------------- 61 (164)
-....|+|+|+.|+||||+++.+.+..+.+......+ + +.+...+...+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 4566899999999999999999998653221100000 0 00000000000
Q ss_pred -------------------EEEEEEEeeCCCccc-------------cchhhhhhcc-cccEEEEEEECCChHHHHHHHH
Q 031201 62 -------------------KRIKLQIWDTAGQER-------------FRTITTAYYR-GAMGILLVYDVTDESSFNNIRN 108 (164)
Q Consensus 62 -------------------~~~~~~l~d~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~ 108 (164)
....+.|.|+||-.. ...+...|++ ..+++++|+|+...-+-.....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 013688999999532 1224455677 4568899998764211111122
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 109 WIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 109 ~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
+.+.+. +.+.|+++|+||.|..+
T Consensus 184 ia~~ld---~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 184 LAKEVD---PQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHH---HcCCcEEEEEECCCCCC
Confidence 223332 33788999999999863
No 306
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.15 E-value=1.2e-09 Score=86.84 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=72.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCccc-ceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-------hh-
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TI- 80 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-------~~- 80 (164)
++-...++|+|+|.+|+||||++|.|++........ ...+..........++ ..+.|+||||..... .+
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 344567899999999999999999999976433221 1111122222233444 579999999954321 11
Q ss_pred --hhhhcc--cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031201 81 --TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMD 133 (164)
Q Consensus 81 --~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~ 133 (164)
...+++ ..|++|+|..+.......+-..+++.+....+.. ..+|||.|..|..
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 122333 4789999988764322112223444444433321 4478889999875
No 307
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=8.6e-10 Score=82.07 Aligned_cols=141 Identities=21% Similarity=0.282 Sum_probs=80.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc---------ccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-----
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----- 76 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----- 76 (164)
.+...+.++++|++|.|||||+|.|+...+... ...+..+......+.-+|-.+.+++.||||-..
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 456679999999999999999999988744321 222333344444444467788999999999211
Q ss_pred -------------cc-------hhhhhhcc--cccEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 77 -------------FR-------TITTAYYR--GAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 77 -------------~~-------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
+. .+.+..+. .+|+|++.+.-+.- .+..+.- ..+.+. ..+.+|-|+.|+|.-
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTL 171 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccC
Confidence 10 01112233 46777777764431 1212111 222232 257788899999964
Q ss_pred C-CCCccchHHHHHHHHHhCCcEE
Q 031201 134 E-SKRAVPTSKGQALADEYGIKFF 156 (164)
Q Consensus 134 ~-~~~~~~~~~~~~~~~~~~~~~~ 156 (164)
. .+.....+.+.+-...+++++|
T Consensus 172 T~~El~~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred CHHHHHHHHHHHHHHHHHcCccee
Confidence 1 2222233334444455555443
No 308
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8.4e-10 Score=83.32 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=90.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc--CC--------------------CCCcccceeeeEEEEEEEEECCEEEEEEEee
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD--GS--------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 70 (164)
.++-..+|+-.|.+|||||-+.|+- +. ..-.....++++....++.+++ ..++|.|
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLD 87 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLD 87 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccC
Confidence 4556789999999999999998732 11 1112344455566666666655 7899999
Q ss_pred CCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH
Q 031201 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE 150 (164)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (164)
|||++.|+.-.-.-+.-+|.+++|+|+..--.- . .++.+.-..-.++|++=.+||.|-. ...+.+...+..+.
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-q---T~KLfeVcrlR~iPI~TFiNKlDR~---~rdP~ELLdEiE~~ 160 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-Q---TLKLFEVCRLRDIPIFTFINKLDRE---GRDPLELLDEIEEE 160 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccH-H---HHHHHHHHhhcCCceEEEeeccccc---cCChHHHHHHHHHH
Confidence 999999988777778899999999998762111 1 1233333333589999999999953 33445555566666
Q ss_pred hCC
Q 031201 151 YGI 153 (164)
Q Consensus 151 ~~~ 153 (164)
+++
T Consensus 161 L~i 163 (528)
T COG4108 161 LGI 163 (528)
T ss_pred hCc
Confidence 654
No 309
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.12 E-value=4.4e-10 Score=83.53 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=56.3
Q ss_pred EEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHH----------HHHHHHHHHHHHHh-cCCCCc
Q 031201 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS----------FNNIRNWIRNIEQH-ASDNVN 122 (164)
Q Consensus 54 ~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~p 122 (164)
...+.+.+ ..+.++|.+|+..-+.-|..++.+++++|||.++++-+. ..+-..+.+.+-+. .-.+.+
T Consensus 187 e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ts 264 (354)
T KOG0082|consen 187 EVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTS 264 (354)
T ss_pred EEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCc
Confidence 34445544 689999999999888899999999999999999987332 12222233333222 225799
Q ss_pred EEEEEeCCCCC
Q 031201 123 KVLVGNKADMD 133 (164)
Q Consensus 123 ~ivv~nK~Dl~ 133 (164)
++|..||.||.
T Consensus 265 iiLFLNK~DLF 275 (354)
T KOG0082|consen 265 IILFLNKKDLF 275 (354)
T ss_pred EEEEeecHHHH
Confidence 99999999984
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.09 E-value=1.1e-09 Score=76.84 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=24.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
+......|.++|+.|+|||||++++...
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4456889999999999999999998764
No 311
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1e-09 Score=86.57 Aligned_cols=118 Identities=26% Similarity=0.335 Sum_probs=83.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc---ccc------------eeeeEEEEEEEEE-----CCEEEEEEEee
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---FIT------------TIGIDFKIRTIEL-----DGKRIKLQIWD 70 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~------------~~~~~~~~~~~~~-----~~~~~~~~l~d 70 (164)
......+++++|+-++|||+|+..|..+.-+.- ... ..++.+.....+. +++++-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 456788999999999999999999977543322 111 1112222222111 56788999999
Q ss_pred CCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
+||+-.|.+.....++.+|++++++|+..--++.. .+.++ .......|+++|+||+|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ik---haiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIK---HAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHH---HHHhccCcEEEEEehhHH
Confidence 99999999999999999999999999986544422 22222 223347899999999995
No 312
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.07 E-value=1e-09 Score=78.43 Aligned_cols=125 Identities=20% Similarity=0.317 Sum_probs=69.6
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcC---CCCC----cccceee-------eEEE----------EEEEEEC----
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDG---SFTT----SFITTIG-------IDFK----------IRTIELD---- 60 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~---~~~~----~~~~~~~-------~~~~----------~~~~~~~---- 60 (164)
....++.+-|+|+|..|+|||||+++|... ...+ +.+|... +++. .+...-|
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345678889999999999999999998542 1111 1111000 0000 0000001
Q ss_pred --------------------CEEEEEEEeeCCCccc-cc-----hhhhhhccc--ccEEEEEEECCC---hHHHHHHHHH
Q 031201 61 --------------------GKRIKLQIWDTAGQER-FR-----TITTAYYRG--AMGILLVYDVTD---ESSFNNIRNW 109 (164)
Q Consensus 61 --------------------~~~~~~~l~d~~g~~~-~~-----~~~~~~~~~--~~~~i~v~d~~~---~~s~~~~~~~ 109 (164)
...+...++||||+-+ |. .+...-+.. --++++|.|... |.+| +..+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNM 170 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNM 170 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHH
Confidence 1234689999999643 11 122222332 234566666533 3333 3344
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 110 IRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 110 ~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
+....-.....+|++++.||.|+.+.
T Consensus 171 lYAcSilyktklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 171 LYACSILYKTKLPFIVVFNKTDVSDS 196 (366)
T ss_pred HHHHHHHHhccCCeEEEEeccccccc
Confidence 44444455568999999999999743
No 313
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.06 E-value=2.1e-11 Score=87.19 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=36.5
Q ss_pred EEEEeeCCCccccchhhhhhc--------ccccEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 65 ~~~l~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
.+.|+|+|||.++...+.... ...-++++++|.....+ ...+..++..+......+.|.+.|+||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 689999999877654433322 34457888898764322 22233334333333333799999999999963
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=6.1e-10 Score=81.18 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=92.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC---CcccceeeeEEEEE--------------EE------EEC----CEEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIR--------------TI------ELD----GKRIK 65 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~--------------~~------~~~----~~~~~ 65 (164)
+..++|.++|.-..|||||..+|.+-+.. ++....+++..-.. .+ ... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 78999999999999999999999874322 22111111111000 00 001 12247
Q ss_pred EEEeeCCCccccchhhhhhcccccEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-c
Q 031201 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-P 140 (164)
Q Consensus 66 ~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~ 140 (164)
+.|.|.||++-.....-.-..-.|+.++|+.++.+ ++-+++.. +.-. + -..++++-||+||...++.. .
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A----leIi-g-ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA----LEII-G-IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH----Hhhh-c-cceEEEEecccceecHHHHHHH
Confidence 89999999986655444445567899999998873 44444322 2111 1 24589999999997433332 4
Q ss_pred hHHHHHHHHHh---CCcEEEEeccCC
Q 031201 141 TSKGQALADEY---GIKFFETVMQRQ 163 (164)
Q Consensus 141 ~~~~~~~~~~~---~~~~~~~Sa~~g 163 (164)
.+++++|.+-. ++|++.+||..+
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~ 187 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHK 187 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhc
Confidence 56677777765 569999999854
No 315
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.03 E-value=3.2e-09 Score=79.16 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=51.6
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccchH
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTS 142 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~ 142 (164)
+.+.|.||+|....... ....+|.++++.+....+....+.. .+.+ ..-++|+||.|+..... .....
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 57899999996533222 3557999999976555554443332 1111 12379999999863221 01111
Q ss_pred HHHHHHHH-------hCCcEEEEeccCCC
Q 031201 143 KGQALADE-------YGIKFFETVMQRQI 164 (164)
Q Consensus 143 ~~~~~~~~-------~~~~~~~~Sa~~g~ 164 (164)
+....... ...|++.+||++|+
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~ 246 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGE 246 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCC
Confidence 22222221 22589999999884
No 316
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.9e-09 Score=85.99 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=80.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE------------CCE---E-EEEEEeeCCCcc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL------------DGK---R-IKLQIWDTAGQE 75 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~-~~~~l~d~~g~~ 75 (164)
.-+-.=|||+|...+|||-|+..+.+..........++..+....+.. ++. . =-+.++|+||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 344566999999999999999999886665544444432222221111 111 0 137789999999
Q ss_pred ccchhhhhhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 76 RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
.|..+.......||+.|+|+|+-. +.+.+ .+......+.|+||.+||+|-
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiE-------Si~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE-------SINLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhH-------HHHHHHhcCCCeEEeehhhhh
Confidence 999999999999999999999865 43443 333333348999999999994
No 317
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.3e-08 Score=75.89 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=54.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE------------C-C---EEEEEEEeeCCCccc--
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL------------D-G---KRIKLQIWDTAGQER-- 76 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~-~---~~~~~~l~d~~g~~~-- 76 (164)
.+++.|+|-|++|||||+|+++.........|..+++-..-...+ . . ...++.|+|..|--.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999997754343444333322222221 1 1 235789999998322
Q ss_pred --cchhhh---hhcccccEEEEEEECC
Q 031201 77 --FRTITT---AYYRGAMGILLVYDVT 98 (164)
Q Consensus 77 --~~~~~~---~~~~~~~~~i~v~d~~ 98 (164)
-..+-. ..++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 122222 2356899999999976
No 318
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.97 E-value=9.6e-10 Score=85.01 Aligned_cols=145 Identities=21% Similarity=0.365 Sum_probs=110.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
.-..+|+.|+|..++|||+|+.+++...+.+...+.-+ .+.+.+.+++.+..+-+.|.+|.. -..|-..+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 34578999999999999999999999888877655444 566777888888888899988833 23455679999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC-CCCccchHHHHHHHHHh-CCcEEEEeccCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETVMQRQ 163 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g 163 (164)
|+||.+.+.++|+.+..+.-.+..+. ...+|+++++++.-... ..+.+..+++..++.++ .+.||+.+|-+|
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG 174 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYG 174 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence 99999999999999988776665433 35789999998866542 33444555565555555 479999998876
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.6e-09 Score=75.84 Aligned_cols=143 Identities=18% Similarity=0.207 Sum_probs=97.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC----------------CCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
......++|..+|.-..|||||..+++.- ..++. ...++++....+.++-....+...|+||
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCC
Confidence 44567899999999999999999887541 11222 2334556666676766667899999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccchHHHHHH
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQAL 147 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~ 147 (164)
+..|-.....-..+.|+.|+|+++.+ |++-+++ .+.++. ++| +++++||+|+.++.. +....+.+++
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-----Llarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-----LLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-----hhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 99988777777788999999999988 4444332 222222 454 555689999984222 1233456777
Q ss_pred HHHhCC-----cEEEEecc
Q 031201 148 ADEYGI-----KFFETVMQ 161 (164)
Q Consensus 148 ~~~~~~-----~~~~~Sa~ 161 (164)
..++++ |++.-||.
T Consensus 158 Ls~y~f~gd~~Pii~gSal 176 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHHcCCCCCCcceeechhh
Confidence 777764 55555553
No 320
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=7.9e-09 Score=72.67 Aligned_cols=117 Identities=23% Similarity=0.300 Sum_probs=67.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC---------cccceeeeEEEEEEEEECCEEEEEEEeeCCCcc------
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE------ 75 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~------ 75 (164)
.....++|+|+|++|.||||++|.+....... .+..|.++......+.-++-+..+.+.|+||..
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 34567999999999999999999997643322 122222222222233336667789999999921
Q ss_pred ------------ccc--------hhhhhhcc--cccEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 76 ------------RFR--------TITTAYYR--GAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 76 ------------~~~--------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
.|. ......+. .++++++.+..+. -++..+.- +++.+.. -+.++-|+-|+|-
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDt 196 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADT 196 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccc
Confidence 111 11222333 3667777776553 12222221 3333333 3457788889994
No 321
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.90 E-value=9.3e-09 Score=78.79 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=52.1
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh----------HHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCC
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADM 132 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl 132 (164)
..+.++|++|+...+..|..++.+++++|||+++++- +.+.+...+.+.+-. ..-.+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 5789999999998899999999999999999998752 234444444444433 22247999999999997
No 322
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.89 E-value=8.4e-09 Score=76.38 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=49.7
Q ss_pred EEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchH
Q 031201 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 142 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (164)
.+.+.|.|++|..... ......+|.++++-... +-+++......+. +.|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 3678899999853211 22455678777774433 3333333333331 46679999999997332110000
Q ss_pred H-----HHHHHHH---hCCcEEEEeccCCC
Q 031201 143 K-----GQALADE---YGIKFFETVMQRQI 164 (164)
Q Consensus 143 ~-----~~~~~~~---~~~~~~~~Sa~~g~ 164 (164)
. ...+... .+.+++.+||++|+
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~ 224 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGR 224 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCC
Confidence 0 0111111 22469999999884
No 323
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=9.8e-09 Score=72.30 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=71.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEE--EEECCEEEEEEEeeCCCccccchh---hhhhcccc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT--IELDGKRIKLQIWDTAGQERFRTI---TTAYYRGA 88 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~d~~g~~~~~~~---~~~~~~~~ 88 (164)
...+|+++|...+||||+.+...++.-+-.... .+...+- -.+.+.-+.+++||+||+-.+-+- ....++++
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlf---lESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~ 102 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLF---LESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV 102 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeE---eeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence 345699999999999999998877554332211 1111110 011223467999999998654321 34567899
Q ss_pred cEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 89 MGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 89 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
.++|+|+|+-+. +...++..........+ +++.+-+.+.|.|-
T Consensus 103 gALifvIDaQddy~eala~L~~~v~raykvN-p~in~EVfiHKvDG 147 (347)
T KOG3887|consen 103 GALIFVIDAQDDYMEALARLHMTVERAYKVN-PNINFEVFIHKVDG 147 (347)
T ss_pred CeEEEEEechHHHHHHHHHHHHHhhheeecC-CCceEEEEEEeccC
Confidence 999999998752 22333322222222223 47888999999995
No 324
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.5e-08 Score=76.80 Aligned_cols=140 Identities=20% Similarity=0.140 Sum_probs=90.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC---CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
-|+-.|.-..|||||++.+.+.. .++......+++...+.+.. .+..+.|.|.||++++-...-.-+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~--~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL--EDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC--CCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 46788999999999999998854 33444444455554444443 33489999999999887767667778999999
Q ss_pred EEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-chHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++..+ +++.+++ ..+... . ....++|+||+|..++.+.. ..+++.......+++++.+|+++|+
T Consensus 80 vV~~deGl~~qtgEhL----~iLdll-g-i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~ 148 (447)
T COG3276 80 VVAADEGLMAQTGEHL----LILDLL-G-IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGR 148 (447)
T ss_pred EEeCccCcchhhHHHH----HHHHhc-C-CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCC
Confidence 999964 3333332 222222 1 23458999999997543211 1111222222334688999999885
No 325
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.87 E-value=5.9e-09 Score=68.84 Aligned_cols=54 Identities=26% Similarity=0.285 Sum_probs=38.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
+++++|.+|+|||||+|++++........ ..+.+.....+..++ .+.||||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877643211 122233334445544 5899999994
No 326
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.85 E-value=2.7e-09 Score=77.92 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=81.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc---------ccchh
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTI 80 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~---------~~~~~ 80 (164)
.....-.-|.++|..++|||||++.|+.....+...-..+.+............ .+.+.||-|.- .|+..
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH
Confidence 344556779999999999999999999877666555555555555555554444 67888999832 23332
Q ss_pred hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC----cEEEEEeCCCCC
Q 031201 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV----NKVLVGNKADMD 133 (164)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~----p~ivv~nK~Dl~ 133 (164)
. .-...+|+++-|.|+++|+.-++....+..+....-+.. .++=|-||+|..
T Consensus 252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 2 235679999999999999766665555555555432222 245566888864
No 327
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.84 E-value=2.2e-07 Score=66.05 Aligned_cols=88 Identities=25% Similarity=0.234 Sum_probs=59.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh-------hhhhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYY 85 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-------~~~~~ 85 (164)
.--.+|+++|.|.+|||||+..++...-........+.+.-.-.+.+++ ..+++.|.||.-.-.+. .....
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEe
Confidence 4457899999999999999999988554332222222333334455666 56899999994332221 12245
Q ss_pred ccccEEEEEEECCChHH
Q 031201 86 RGAMGILLVYDVTDESS 102 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s 102 (164)
+-+|++++|.|++..+.
T Consensus 138 rtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 138 RTADLILMVLDATKSED 154 (364)
T ss_pred ecccEEEEEecCCcchh
Confidence 67999999999987543
No 328
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.80 E-value=1.9e-09 Score=73.54 Aligned_cols=41 Identities=20% Similarity=0.060 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCCCCCccchHHHHHHHHHh--CCcEEEEeccCCC
Q 031201 123 KVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETVMQRQI 164 (164)
Q Consensus 123 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~ 164 (164)
=++|+||.||. ..-....+...+-+++. +++++++|++||+
T Consensus 145 DllVInK~DLa-~~v~~dlevm~~da~~~np~~~ii~~n~ktg~ 187 (202)
T COG0378 145 DLLVINKTDLA-PYVGADLEVMARDAKEVNPEAPIIFTNLKTGE 187 (202)
T ss_pred eEEEEehHHhH-HHhCccHHHHHHHHHHhCCCCCEEEEeCCCCc
Confidence 38999999997 33333344444444444 4799999999985
No 329
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.79 E-value=2.2e-08 Score=68.24 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=39.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
...++++++|.+|+|||||+|++.+..... ...+ +.+.....+..+. .+.++|+||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~p--g~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATP--GVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCC--CeEcceEEEEeCC---CEEEEECcC
Confidence 445899999999999999999999865432 2223 2333333444443 689999998
No 330
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.78 E-value=2.3e-08 Score=71.74 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=82.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccc-eeeeEEEEEEEEECCEEEEEEEeeCCC----------ccccchh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~~ 80 (164)
.....+++++|.+++|||+|+|.+........... ..+.+.....+.++. .+.+.|.|| ...+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 56789999999999999999999988654433222 333333333444444 788999999 1234445
Q ss_pred hhhhcccccE---EEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------CCccchHHHH
Q 031201 81 TTAYYRGAMG---ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES----------KRAVPTSKGQ 145 (164)
Q Consensus 81 ~~~~~~~~~~---~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~ 145 (164)
...|+.+-+- +.+..|++.+ ..-.....|+.+- ++|+.+|.||+|.... .........-
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc------CCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 5555554433 3444555432 1112222343332 8999999999996311 1111111112
Q ss_pred HHHHHhCCcEEEEeccCC
Q 031201 146 ALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~g 163 (164)
+-+-....|+..+|+.|+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~ 301 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTS 301 (320)
T ss_pred ccceeccCCceeeecccc
Confidence 222223457778888775
No 331
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.5e-08 Score=78.39 Aligned_cols=115 Identities=23% Similarity=0.340 Sum_probs=84.6
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT--------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
.+.....-+|+++-.-..|||||+..|...... .....+.+++...-.+..-.+.+.+.++|+||+
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 456678889999999999999999998664311 112223344444444444445688999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCC---hHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCC
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRN-WIRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D 131 (164)
-.|.+.......-+|+.++++|+.. .++..-+++ |.+ +...++|+||+|
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 9999988888889999999999875 345544444 444 566799999999
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.74 E-value=4.4e-08 Score=72.09 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=57.7
Q ss_pred hhhcccccEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEec
Q 031201 82 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
...+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+||.+. . .......+....+.+++.+||
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~-~--~~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDD-E--EEELELVEALALGYPVLAVSA 146 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCCh-H--HHHHHHHHHHhCCCeEEEEEC
Confidence 33578999999999999987 888888888776543 6889999999999632 1 111223334556789999999
Q ss_pred cCCC
Q 031201 161 QRQI 164 (164)
Q Consensus 161 ~~g~ 164 (164)
++|.
T Consensus 147 ~~g~ 150 (287)
T cd01854 147 KTGE 150 (287)
T ss_pred CCCc
Confidence 9874
No 333
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.74 E-value=4.4e-08 Score=65.79 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=36.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
...+|+++|.+|+|||||+|+|.+........ ..+.+.....+..+. .+.+.|+||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999865433211 112222222223332 478999998
No 334
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=7.1e-08 Score=65.73 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=40.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
....++++++|.+|+|||||+|++.+..+... ....+.+.....+.++ ..+.+|||||-
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34558999999999999999999999776322 2222233333444444 36899999993
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.69 E-value=7.4e-08 Score=64.56 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=39.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
....+++++|.+++||||++|++.+.... ...++.+.+.....+..++ .+.+||+||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 34678999999999999999999975432 2333444333333233333 699999998
No 336
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.2e-07 Score=68.54 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=99.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC----------CCC----CcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDG----------SFT----TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 75 (164)
......++|.-+|.-..|||||-.+++.- ++. .......++++....+.+......+.=.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 34567899999999999999999887541 010 1122334566777777777777788889999999
Q ss_pred ccchhhhhhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc--hHHHHHHHHH
Q 031201 76 RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQALADE 150 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~ 150 (164)
.|-.....-....|+.|+|+.++| |++-+++ .|..+.+ -..+++.+||.|+.++...+. .-+++++..+
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl-----LLArQVG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHL-----LLARQVG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHH-----HHHHHcC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 888877777788999999999998 3343332 2233333 245677789999984333222 2235666666
Q ss_pred hC-----CcEEEEecc
Q 031201 151 YG-----IKFFETVMQ 161 (164)
Q Consensus 151 ~~-----~~~~~~Sa~ 161 (164)
++ +|++.-||.
T Consensus 203 ~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSAL 218 (449)
T ss_pred cCCCCCCCCeeecchh
Confidence 65 478877775
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.66 E-value=1.1e-07 Score=71.53 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
..++|.+++|++.....++..+..|+..... .++|.++|+||+||.+........+.....+..+.+++++||++|+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999998877789999999875543 3688999999999963221111222333345667899999999874
No 338
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.66 E-value=1.2e-07 Score=69.80 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=40.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
...++++++|.+|+|||||+|+|.+..... ...+ +.+.....+..+. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRP--GVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCC--CeEEEEEEEEeCC---cEEEEECCCc
Confidence 456899999999999999999999876432 2222 2333333444444 5889999995
No 339
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.66 E-value=9.7e-08 Score=69.93 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=40.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
...++++++|.+|+|||||+|+|.+....... ...+.+.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 45689999999999999999999986643321 1122233333444443 5799999996
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.65 E-value=1.2e-07 Score=65.69 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=52.8
Q ss_pred cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHh
Q 031201 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEY 151 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~ 151 (164)
+...+..+++++|++++|+|+.++..- |...+.... .+.|+++|+||+|+.. .....+....+. +..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLP--KDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCC--CCCCHHHHHHHHHHHHHhhc
Confidence 577788899999999999999875421 222222222 3689999999999863 222233344443 233
Q ss_pred CC---cEEEEeccCCC
Q 031201 152 GI---KFFETVMQRQI 164 (164)
Q Consensus 152 ~~---~~~~~Sa~~g~ 164 (164)
+. +++.+||++|+
T Consensus 96 ~~~~~~i~~vSA~~~~ 111 (190)
T cd01855 96 GLKPKDVILISAKKGW 111 (190)
T ss_pred CCCcccEEEEECCCCC
Confidence 43 68999999874
No 341
>PRK12289 GTPase RsgA; Reviewed
Probab=98.65 E-value=1.4e-07 Score=71.16 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=55.8
Q ss_pred hhhhhhcccccEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEE
Q 031201 79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
.+....+.++|.+++|+|+.+++ ....+.+|+..+.. .++|+++|+||+||.+. .. .+...+.....+++++.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~-~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSP-TE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCCh-HH--HHHHHHHHHhcCCeEEE
Confidence 34455688999999999998875 45566777765533 36899999999999621 11 11222333466889999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
+||++|+
T Consensus 155 iSA~tg~ 161 (352)
T PRK12289 155 ISVETGI 161 (352)
T ss_pred EEcCCCC
Confidence 9999874
No 342
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.7e-07 Score=71.04 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=84.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
...-+..+-++|+||+|+|||||++.|..+-.....+. +...-..+.+...+++|.++|.+ ... .....+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~-----i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDE-----IRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhc-----cCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhh
Confidence 34556778889999999999999999877432222111 11111234577789999999942 222 23345678
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH----HHHHHh--CCcEEEEecc
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALADEY--GIKFFETVMQ 161 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~~--~~~~~~~Sa~ 161 (164)
|++++++|.+-.=..+.+ .++..+..+. .+.++-|+|..|+.. ........-+ +|..+. |+.+|.+|..
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~HG--mPrvlgV~ThlDlfk-~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILISHG--MPRVLGVVTHLDLFK-NPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhhcC--CCceEEEEeeccccc-ChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 999999998753222222 3445554443 345677889999962 2222222222 333333 6777777754
No 343
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.1e-07 Score=69.57 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=72.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC--------------cccc---------eeeeEEEEEEEEECC-------
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT--------------SFIT---------TIGIDFKIRTIELDG------- 61 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~---------~~~~~~~~~~~~~~~------- 61 (164)
.-..++++++|...+|||||+-.|+.+.... +..+ ..+++...+.++++.
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 3457899999999999999998886643221 1111 111111111122211
Q ss_pred ---EEEEEEEeeCCCccccchhhhhhcc--cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 62 ---KRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 62 ---~~~~~~l~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.+--+.|.|..|+..|......-+. ..|...+|+++..--.|.. +..+-.+... ++|+.++++|+|+.
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLV 316 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccc
Confidence 1236889999999988765544444 3577888888876443321 1122222222 89999999999996
No 344
>PRK00098 GTPase RsgA; Reviewed
Probab=98.64 E-value=1.1e-07 Score=70.30 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=54.8
Q ss_pred hcccccEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 84 YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
.+.++|.+++|+|+.+++.... +.+|+..+.. .++|+++|+||+|+.+ ... ..++..+..+..+.+++.+||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~-~~~-~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLD-DLE-EARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCC-CHH-HHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999988865444 4567666543 3689999999999962 221 22334455566788999999998
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 152 g~ 153 (298)
T PRK00098 152 GE 153 (298)
T ss_pred Cc
Confidence 74
No 345
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.62 E-value=1.2e-06 Score=66.62 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=84.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC-----------------CCCCcccceeeeEEEE-------EEEEE-CCEEEEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDG-----------------SFTTSFITTIGIDFKI-------RTIEL-DGKRIKLQI 68 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~-----------------~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~l 68 (164)
-.+=|.|+||-.+|||||+++|-.. ..|+......-.+... ..+.+ ++-.+.+.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 3456899999999999999999442 2222211111111111 22333 467789999
Q ss_pred eeCCCc-------------ccc-chhh---------------hhhccc--ccEEEEEEECC--C--hHHHHHHHH-HHHH
Q 031201 69 WDTAGQ-------------ERF-RTIT---------------TAYYRG--AMGILLVYDVT--D--ESSFNNIRN-WIRN 112 (164)
Q Consensus 69 ~d~~g~-------------~~~-~~~~---------------~~~~~~--~~~~i~v~d~~--~--~~s~~~~~~-~~~~ 112 (164)
.|+.|- ++. ..-| +..+.+ .-++++.-|.+ + ++.+.+... ..++
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999881 010 0111 111222 22466666644 2 455555544 5555
Q ss_pred HHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEecc
Q 031201 113 IEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 113 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
|... +.|+++++|-.+- ......+.+.++...+++|.+.+++.
T Consensus 176 Lk~i---gKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCE 218 (492)
T ss_pred HHHh---CCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehH
Confidence 5555 7899999998883 34445677888888999998887753
No 346
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.60 E-value=4.6e-07 Score=68.36 Aligned_cols=83 Identities=18% Similarity=0.027 Sum_probs=56.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCEE---------------EEEEEeeCCCccccc-
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR- 78 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~d~~g~~~~~- 78 (164)
+++.|+|.|++|||||++.+++... .....+..+++-....+.+.+.+ ..+.+.|.||--.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999776 44333333333333334443321 368899999943211
Q ss_pred ------hhhhhhcccccEEEEEEECC
Q 031201 79 ------TITTAYYRGAMGILLVYDVT 98 (164)
Q Consensus 79 ------~~~~~~~~~~~~~i~v~d~~ 98 (164)
...-..++.+|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12333577899999999974
No 347
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.59 E-value=1.8e-07 Score=61.76 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=51.7
Q ss_pred hhhcccccEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 82 TAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
...++++|++++|+|+.++.+.. .+..++... . .+.|+++|+||+|+.+ ... ..+..++.+..+.+++.+|
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~-~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLT-EEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCC-HHH--HHHHHHHHHhcCCeEEEEE
Confidence 34577899999999998876533 444444432 1 3689999999999852 111 2234455556678899999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|.
T Consensus 79 a~~~~ 83 (141)
T cd01857 79 ALKEN 83 (141)
T ss_pred ecCCC
Confidence 99874
No 348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.59 E-value=3.2e-07 Score=78.97 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=72.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCccc----ce--eeeEEEEEEEEECCEEEEEEEeeCCCcc--------ccchh
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI----TT--IGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTI 80 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~l~d~~g~~--------~~~~~ 80 (164)
..=.+|+|++|+||||+++.- +..++-... .+ .+-+. ...+.+.+ +-.++|++|.. .....
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHH
Confidence 344799999999999999987 434432210 00 11011 11223333 56689999932 12223
Q ss_pred hhhhc---------ccccEEEEEEECCC-----hHH----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 81 TTAYY---------RGAMGILLVYDVTD-----ESS----FNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 81 ~~~~~---------~~~~~~i~v~d~~~-----~~s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
|..++ ...+++|+++|+.+ ++. -..++..++++....+...|+.||+||+|+-
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 43333 34899999999765 221 2456667788888888899999999999974
No 349
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.59 E-value=1.2e-07 Score=65.72 Aligned_cols=54 Identities=30% Similarity=0.403 Sum_probs=37.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC---------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
..+++++|.+|+|||||+|+|.+... .....+ +++.....+..+. .+.|+||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEecCC---CCEEEeCcC
Confidence 35799999999999999999998542 112222 2334444444443 579999999
No 350
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.58 E-value=2.1e-07 Score=67.99 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
....-|.|+|++|+|||||++++++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988774
No 351
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.57 E-value=1.5e-07 Score=63.06 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=50.3
Q ss_pred chhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEE
Q 031201 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (164)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
+.+++..++++|++++|+|+.++...... .+...+. ..+.|+++|+||+|+.+. .. .+....+....+.+++.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~-~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPK-EV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCH-HH--HHHHHHHHHhCCCcEEE
Confidence 44566777889999999999876432221 1222121 126799999999998521 11 11122333445678999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
+||++|+
T Consensus 76 iSa~~~~ 82 (156)
T cd01859 76 VSAKERL 82 (156)
T ss_pred EEccccc
Confidence 9999874
No 352
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.56 E-value=3.7e-07 Score=68.43 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=89.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc--------------ccceeeeEEEEEEEEECC-------------
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS--------------FITTIGIDFKIRTIELDG------------- 61 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~------------- 61 (164)
.+..+-.+.+.+.|.-+.|||||.-.|.-.....- .....+-+....-+-+++
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 34456778999999999999999988755332211 111111112222222221
Q ss_pred --------EEEEEEEeeCCCccccchh--hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031201 62 --------KRIKLQIWDTAGQERFRTI--TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 62 --------~~~~~~l~d~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (164)
...-+.|.|+.|++.|-.. ...+-...|..++++-+++--+ .+.+ +.+--....+.|++++.||+|
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tk--EHLgi~~a~~lPviVvvTK~D 266 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTK--EHLGIALAMELPVIVVVTKID 266 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhh--HhhhhhhhhcCCEEEEEEecc
Confidence 1125789999999987543 3334457899999998886322 1111 222222223799999999999
Q ss_pred CCCCCC-ccchHHHHHHHHHh-----------------------C--CcEEEEeccCCC
Q 031201 132 MDESKR-AVPTSKGQALADEY-----------------------G--IKFFETVMQRQI 164 (164)
Q Consensus 132 l~~~~~-~~~~~~~~~~~~~~-----------------------~--~~~~~~Sa~~g~ 164 (164)
+.++++ +-..+++..+.+.. . +|+|.+|+.||+
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~ 325 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE 325 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc
Confidence 964332 11223333332221 1 489999999985
No 353
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.2e-06 Score=67.43 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=83.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCccc-ceeeeE----------------------------------------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGID---------------------------------------- 51 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~---------------------------------------- 51 (164)
....||+|.|..++||||++|+++.....+... ++..+=
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 346799999999999999999997755433211 111100
Q ss_pred --EEEEEEEECCEE-----EEEEEeeCCCcc---ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC
Q 031201 52 --FKIRTIELDGKR-----IKLQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121 (164)
Q Consensus 52 --~~~~~~~~~~~~-----~~~~l~d~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (164)
...-.+..+... -.+.+.|.||-+ ...+-...+-.++|++|+|.++.+..+..+.. ++...... ++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhcc---CC
Confidence 000011111110 147788999944 33444456677999999999988765554432 33333222 34
Q ss_pred cEEEEEeCCCCCCCCCccchHHHHHHHHHhC--------CcEEEEecc
Q 031201 122 NKVLVGNKADMDESKRAVPTSKGQALADEYG--------IKFFETVMQ 161 (164)
Q Consensus 122 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 161 (164)
.+.++.||-|.. ...+...+.+....++.. -.+|++||+
T Consensus 263 niFIlnnkwDas-ase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDAS-ASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhh-cccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 466667888986 343334444444433332 257888865
No 354
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=3.1e-06 Score=60.16 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=66.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CCCCcc---cceeeeEEEEEEEEECCEEEEEEEeeCCCccccc------hh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSF---ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TI 80 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~------~~ 80 (164)
.....-|+|+|++++|||+|+|.|++. .|.... ..|.++-.....+.. +....+.++|++|..... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence 456778999999999999999999998 554321 222222222211111 234689999999954321 11
Q ss_pred hhhhccc--ccEEEEEEECCCh-HHHHHHHHHHHHH---------HHhcCCCCcEEEEEeCCCC
Q 031201 81 TTAYYRG--AMGILLVYDVTDE-SSFNNIRNWIRNI---------EQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 81 ~~~~~~~--~~~~i~v~d~~~~-~s~~~~~~~~~~~---------~~~~~~~~p~ivv~nK~Dl 132 (164)
....+.. ++++|+..+.... ...+.+....+.. .........++.|+-..++
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 1222223 7778877776543 3343433333310 1122234556777766555
No 355
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.52 E-value=2.6e-07 Score=69.02 Aligned_cols=57 Identities=30% Similarity=0.362 Sum_probs=42.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
....++.|+|.|++||||++|+|.+..... ...| +.+.....+..+. .+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCc
Confidence 345789999999999999999999976532 2233 4445555566655 4899999993
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=4.2e-07 Score=60.90 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=37.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
....+++++|.+|+|||||+|.+.+.... ....+..+ .....+..+. .+.+.|+||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t--~~~~~~~~~~---~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT--TSQQEVKLDN---KIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc--cceEEEEecC---CEEEEECCC
Confidence 45688999999999999999999986532 22222222 2222333332 689999998
No 357
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.47 E-value=5.5e-06 Score=64.95 Aligned_cols=140 Identities=18% Similarity=0.253 Sum_probs=86.6
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc-------------------------cceeeeE-----------
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-------------------------ITTIGID----------- 51 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------------------~~~~~~~----------- 51 (164)
......+..+|+|+|...+||||.++.+....+.+.. ++..+++
T Consensus 301 sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR 380 (980)
T KOG0447|consen 301 SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALR 380 (980)
T ss_pred cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHH
Confidence 4566788999999999999999999998654322210 0001110
Q ss_pred ------------------EEEEEEEECCEE-EEEEEeeCCCc-------------cccchhhhhhcccccEEEEEEECCC
Q 031201 52 ------------------FKIRTIELDGKR-IKLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVYDVTD 99 (164)
Q Consensus 52 ------------------~~~~~~~~~~~~-~~~~l~d~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (164)
-....+++.|.. -+..+.|.||. +..-.+...++.+.+++|+|+--.+
T Consensus 381 ~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS 460 (980)
T KOG0447|consen 381 HEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS 460 (980)
T ss_pred HHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC
Confidence 111122222221 15778999992 2334567788999999999997666
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH
Q 031201 100 ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE 150 (164)
Q Consensus 100 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (164)
.+.-... ....+....+.+...|+|.||.|++ +......+.++....-
T Consensus 461 VDAERSn--VTDLVsq~DP~GrRTIfVLTKVDlA-EknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 461 VDAERSI--VTDLVSQMDPHGRRTIFVLTKVDLA-EKNVASPSRIQQIIEG 508 (980)
T ss_pred cchhhhh--HHHHHHhcCCCCCeeEEEEeecchh-hhccCCHHHHHHHHhc
Confidence 5432211 2233344445577899999999998 4444556666665543
No 358
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=5.5e-07 Score=68.37 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=58.1
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH----HHHH
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALAD 149 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~ 149 (164)
.+.|..+...+.+.++++++|+|+.+... .|...+.+... +.|+++|+||+|+.+ .....+... ++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHH
Confidence 45778888888899999999999976431 24444444433 678999999999853 222233333 4466
Q ss_pred HhCC---cEEEEeccCCC
Q 031201 150 EYGI---KFFETVMQRQI 164 (164)
Q Consensus 150 ~~~~---~~~~~Sa~~g~ 164 (164)
+.++ .++.+||++|.
T Consensus 122 ~~g~~~~~i~~vSAk~g~ 139 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGN 139 (360)
T ss_pred HcCCCcCcEEEecCCCCC
Confidence 6776 48999999874
No 359
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.45 E-value=7.8e-07 Score=65.62 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=60.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC---------------EEEEEEEeeCCCcccc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG---------------KRIKLQIWDTAGQERF 77 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~d~~g~~~~ 77 (164)
.+.+++.|+|.|++|||||+|.|+.........|..+++-....+.+.. ....++++|..|--.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4788999999999999999999999887776666666665555554422 2347999999883322
Q ss_pred c----hhhh---hhcccccEEEEEEECC
Q 031201 78 R----TITT---AYYRGAMGILLVYDVT 98 (164)
Q Consensus 78 ~----~~~~---~~~~~~~~~i~v~d~~ 98 (164)
. .+-. ..++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 1 1222 2355688877777754
No 360
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.35 E-value=4.4e-07 Score=60.87 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-.++++|++|+|||||+|.|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368899999999999999999863
No 361
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.32 E-value=2.5e-06 Score=61.10 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=50.6
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH----------HHHHHHHHHHHHHHh-cCCCCcEEEEEeCC
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQH-ASDNVNKVLVGNKA 130 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~ 130 (164)
..+.++.+|.+|+..-+..|...+.+.-++|+|..+++-+ .+.+...+.+.+=+. --..+.+|+..||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3467999999999988889999999999999999988621 222222222222111 11257789999999
Q ss_pred CCC
Q 031201 131 DMD 133 (164)
Q Consensus 131 Dl~ 133 (164)
|+-
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 973
No 362
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.32 E-value=1.6e-07 Score=67.14 Aligned_cols=141 Identities=21% Similarity=0.144 Sum_probs=71.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-----------CCc---------------ccceeeeEEEEEEEEECC-----
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-----------TTS---------------FITTIGIDFKIRTIELDG----- 61 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-----------~~~---------------~~~~~~~~~~~~~~~~~~----- 61 (164)
.+.+.|.|-|+||+|||||++.|...-. .+. .........+.+..-.-+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 4567999999999999999999854100 000 000001123333332211
Q ss_pred -------------EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 031201 62 -------------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGN 128 (164)
Q Consensus 62 -------------~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (164)
..+.+.|.+|.|--+.. .....-+|.+++|..-..-+..+-++.-+-++ .=++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 11467788888733221 22344689999998876655554444422222 2388899
Q ss_pred CCCCCCCCCcc-chHHHHHHHHH----hCCcEEEEeccCCC
Q 031201 129 KADMDESKRAV-PTSKGQALADE----YGIKFFETVMQRQI 164 (164)
Q Consensus 129 K~Dl~~~~~~~-~~~~~~~~~~~----~~~~~~~~Sa~~g~ 164 (164)
|.|.+.+.... .......+... +.-|++.+||.+|+
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~ 216 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGE 216 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTB
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCC
Confidence 99975322211 11122222221 12489999998874
No 363
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.32 E-value=5.2e-06 Score=60.50 Aligned_cols=143 Identities=21% Similarity=0.134 Sum_probs=76.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC-----------CCCccccee---------------eeEEEEEEEEE-----
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS-----------FTTSFITTI---------------GIDFKIRTIEL----- 59 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~-----------~~~~~~~~~---------------~~~~~~~~~~~----- 59 (164)
...+...|.|-|.||+|||||+..|...- ..+....+- ....+.+....
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 34566789999999999999999985421 011111111 01122222211
Q ss_pred -------------CCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEE
Q 031201 60 -------------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV 126 (164)
Q Consensus 60 -------------~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv 126 (164)
+...+.+.|.+|.|--+... ....-+|.+++|--..--+..+-++.=+-++. =++|
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~v 195 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIV 195 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heee
Confidence 11224678888887432221 23445888888776555555555544322221 2788
Q ss_pred EeCCCCCCCCCcc-chHHHHHHH----HHhC--CcEEEEeccCCC
Q 031201 127 GNKADMDESKRAV-PTSKGQALA----DEYG--IKFFETVMQRQI 164 (164)
Q Consensus 127 ~nK~Dl~~~~~~~-~~~~~~~~~----~~~~--~~~~~~Sa~~g~ 164 (164)
+||.|...+.... ....+.++. ...+ -|.+.+||.+|+
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~ 240 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGE 240 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCC
Confidence 9999975332211 111122222 2223 389999999875
No 364
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.31 E-value=5.7e-06 Score=55.67 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
+++.|+.|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998765
No 365
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=7.6e-06 Score=58.34 Aligned_cols=143 Identities=18% Similarity=0.283 Sum_probs=87.4
Q ss_pred eeeEEEEcCCCC--cHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEE--EEEEeeCCCccccchhhhhhcccccE
Q 031201 15 LIKLLLIGDSGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI--KLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 15 ~~~i~v~G~~~~--GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
+.-++|+|.+|+ ||.+++.+|....|.....+....++ ..++++++-+ .+.+.-.+-.+.+.-...........
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~--hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF--HGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceee--eceEecceeeecceeEEeecccchhccCCcccccceee
Confidence 346789999998 99999999999887765554444333 3344444322 12222122222222222233345667
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------------CC----------------
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------------KR---------------- 137 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------------~~---------------- 137 (164)
+++|||++....+..+..|+..-.-..- ++ ++.++||.|-... .+
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdinsf-di-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINSF-DI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccccc-hh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 9999999998889999989875432211 22 4556788884210 00
Q ss_pred ----------ccchHHHHHHHHHhCCcEEEEecc
Q 031201 138 ----------AVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 138 ----------~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
-.....+.+||-++++.|++.+|.
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacas 193 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACAS 193 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCC
Confidence 023344688999999999999884
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.30 E-value=9e-06 Score=60.72 Aligned_cols=134 Identities=21% Similarity=0.211 Sum_probs=73.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCc-------cc--------------ceeeeEEEEEEEEE-------------
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-------FI--------------TTIGIDFKIRTIEL------------- 59 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~--------------~~~~~~~~~~~~~~------------- 59 (164)
..--|+++|++|+||||++..+...-.... .+ ...++.+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 346789999999999999998855211000 00 00011111110000
Q ss_pred CCEEEEEEEeeCCCccccchh----hhhh--------cccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEE
Q 031201 60 DGKRIKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLV 126 (164)
Q Consensus 60 ~~~~~~~~l~d~~g~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv 126 (164)
....+.+.|.||+|....... .... -...+..++|.|++.. +.+..+..+.+.+ .+--+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~-------~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAV-------GLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhC-------CCCEEE
Confidence 013357999999996543221 1111 1245678899998753 3444333332221 234788
Q ss_pred EeCCCCCCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 127 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.||.|.. .... .+.......++|+..++
T Consensus 266 lTKlD~t-~~~G----~~l~~~~~~~~Pi~~v~ 293 (318)
T PRK10416 266 LTKLDGT-AKGG----VVFAIADELGIPIKFIG 293 (318)
T ss_pred EECCCCC-CCcc----HHHHHHHHHCCCEEEEe
Confidence 8999954 3322 24555677788888777
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=98.27 E-value=1.9e-06 Score=65.01 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~ 39 (164)
++|+|++|+|||||+|+|++..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999854
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.27 E-value=3.8e-05 Score=51.27 Aligned_cols=113 Identities=19% Similarity=0.316 Sum_probs=63.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCC-Ccc--------------cc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE--------------RF 77 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~~--------------~~ 77 (164)
+..+||.|-|+||+||||++.++.+.-....+ .-. .+....+.-++..+-+.+.|.. |.. .|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 45789999999999999999988752211111 111 1333444445556666666655 210 01
Q ss_pred -----------chhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031201 78 -----------RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 78 -----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (164)
.......++.+|++ ++|--.|..+ ..+++.+.+.....+..|++.++.+.+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 11122233445644 4565544443 223466666666666788888888764
No 369
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.24 E-value=2.8e-06 Score=64.52 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 75 (164)
.++.++|.+|+|||||+|+|++... .....+ +.+.....+..++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999998532 112222 2223333444433 36799999943
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.23 E-value=1.6e-05 Score=58.12 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=50.6
Q ss_pred EEEEEEeeCCCccccchhh----hhh--------cccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031201 63 RIKLQIWDTAGQERFRTIT----TAY--------YRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNK 129 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~~----~~~--------~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (164)
.+.+.|.|++|........ ..+ -...|..++|.|++.. +.+..+..+.+.+ .+.-+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-------~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-------GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-------CCCEEEEEc
Confidence 3678999999965433221 111 1237889999999753 3444433333222 135778899
Q ss_pred CCCCCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 130 ADMDESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.|.. .... .+..+....++|+..++
T Consensus 227 lDe~-~~~G----~~l~~~~~~~~Pi~~~~ 251 (272)
T TIGR00064 227 LDGT-AKGG----IILSIAYELKLPIKFIG 251 (272)
T ss_pred cCCC-CCcc----HHHHHHHHHCcCEEEEe
Confidence 9975 2222 24555566688887776
No 371
>PRK13796 GTPase YqeH; Provisional
Probab=98.19 E-value=2.9e-06 Score=64.60 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=35.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC----cccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT----SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
.++.++|.+|+|||||+|+|....... ...+..+++.....+.+++ ...++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCc
Confidence 479999999999999999998643111 0111112233344444444 2479999994
No 372
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=5.2e-07 Score=68.42 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=86.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC--------CCC--------cccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS--------FTT--------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
...+.-+|.|+..-.+||||.-++++.-. ... ......++++....++++=+.+++.++|+||+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33456789999999999999999875421 100 12223345566666666666689999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
-.|+-....+++-.|+++.|||.+..-.-+.+..|.+. .+.++|-...+||+|..
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKL 167 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhh
Confidence 99998889999999999999999864333444445443 23378889999999974
No 373
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.15 E-value=4.6e-06 Score=60.11 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|++|+|||||+|+|.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68899999999999999999853
No 374
>PRK12289 GTPase RsgA; Reviewed
Probab=98.14 E-value=4.4e-06 Score=63.12 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~ 39 (164)
++|+|++|+|||||+|.|.+..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999754
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.14 E-value=6.9e-05 Score=57.96 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=47.1
Q ss_pred EEEEEEeeCCCccccchh----hhhh--cccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 63 RIKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
.+.+.|.||+|....... ...+ ....+-+++|.|+.-. +..+.+ +.+.+. -.+--+|.||.|-. .
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a----~~F~~~---~~~~g~IlTKlD~~-a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA----KAFKDS---VDVGSVIITKLDGH-A 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH----HHHHhc---cCCcEEEEECccCC-C
Confidence 468999999996543321 1111 2246778999998643 233232 223222 13457788999974 2
Q ss_pred CCccchHHHHHHHHHhCCcEEEEe
Q 031201 136 KRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
... .+.......+.|+..++
T Consensus 254 rgG----~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 KGG----GALSAVAATKSPIIFIG 273 (429)
T ss_pred Ccc----HHhhhHHHHCCCeEEEc
Confidence 221 13445555666655443
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.13 E-value=7.6e-06 Score=54.90 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=44.2
Q ss_pred hcccccEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEecc
Q 031201 84 YYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
-++++|++++|.|+.++.. ...+.+++. .. ..+.|+++|+||+|+.+. .. .......+.+......+.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~-~~-~~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPT-WV-TARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCH-HH-HHHHHHHHhcCCcEEEEEeecc
Confidence 4678999999999998632 333333333 22 335899999999999521 11 1122233322222334778988
Q ss_pred CC
Q 031201 162 RQ 163 (164)
Q Consensus 162 ~g 163 (164)
.|
T Consensus 79 ~~ 80 (157)
T cd01858 79 NP 80 (157)
T ss_pred cc
Confidence 76
No 377
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.13 E-value=5.4e-06 Score=64.27 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=42.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
.+.|.+||.|++||||+||.|.+++.... ..|.+-+-...++.+.. .+.|.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCC
Confidence 79999999999999999999999876543 23333334445555555 789999999
No 378
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=7.9e-05 Score=56.70 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=71.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCC---cccceeeeEEEE----------------EEEEE-C----------CEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKI----------------RTIEL-D----------GKRI 64 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~----------------~~~~~-~----------~~~~ 64 (164)
.-.++++|++|+||||++..|...-... ......+.+.+. ..... . -...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4478899999999999999987632110 111111111110 00001 0 0234
Q ss_pred EEEEeeCCCccccchhh----hhh--cccccEEEEEEECCC-hHHHHHHHHHHHHHHHhcC-C-CCcEEEEEeCCCCCCC
Q 031201 65 KLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHAS-D-NVNKVLVGNKADMDES 135 (164)
Q Consensus 65 ~~~l~d~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~ 135 (164)
.+.|+|++|........ ..+ .....-.++|++.+. .+...++..-+........ . ...-=+|.||.|-..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 78999999965433221 111 112345688998875 3444444332222211100 0 012356679999652
Q ss_pred CCccchHHHHHHHHHhCCcEEEEe
Q 031201 136 KRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
..=.+..+....++|+..++
T Consensus 296 ----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ----CccHHHHHHHHHCcCeEEEe
Confidence 12335666677777665544
No 379
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=9.7e-06 Score=69.08 Aligned_cols=113 Identities=22% Similarity=0.243 Sum_probs=67.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC-CCCCccc--ceeeeEEEEEEEEECCEEEEEEEeeCCCccc--------cchhhhhh--
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG-SFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY-- 84 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~~-- 84 (164)
-+|+|++|+||||++..-.-+ .+..... ...+.........+.+ .-.++|+.|... -...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 589999999999998754321 1111100 0000001111123333 567788888321 11223322
Q ss_pred -------cccccEEEEEEECCC-----h----HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 85 -------YRGAMGILLVYDVTD-----E----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 85 -------~~~~~~~i~v~d~~~-----~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.+..+++|+..|+++ + .....++..++++........|+.|++||.|+.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 345799999999875 1 123456667888888888889999999999984
No 380
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.06 E-value=1.4e-05 Score=53.53 Aligned_cols=71 Identities=21% Similarity=0.066 Sum_probs=42.1
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+. .. ..+....+......+++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~-~~-~~~~~~~~~~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPK-EV-LRKWLAYLRHSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCH-HH-HHHHHHHHHhhCCceEEEEeccCCc
Confidence 68999999988765432 12221 1122236899999999999521 11 1111122333334578999999874
No 381
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=1.1e-05 Score=58.42 Aligned_cols=63 Identities=27% Similarity=0.421 Sum_probs=45.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEE----EEECCEEEEEEEeeCCC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT----IELDGKRIKLQIWDTAG 73 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~d~~g 73 (164)
.....++|+.+|..|.|||||++.|.+..|.....+........+. +.-.+-.+.+.+.|+.|
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 3456799999999999999999999998876554443333222222 22256677899999998
No 382
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=1e-05 Score=59.69 Aligned_cols=59 Identities=25% Similarity=0.213 Sum_probs=36.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccc------eeeeEEEEEEEEECCEEEEEEEeeCCCcccc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT------TIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~ 77 (164)
-.++++|++|+|||||+|.|.+........- ...++.....+...+ ...++|+||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 4699999999999999999998543321111 001122233333332 2358999996543
No 383
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=1.1e-05 Score=59.72 Aligned_cols=24 Identities=42% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
.++++|++|+|||||+|.|.+...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 589999999999999999988543
No 384
>PRK13695 putative NTPase; Provisional
Probab=98.03 E-value=0.0001 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998754
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=0.00026 Score=56.05 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=69.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC---CcccceeeeEEEE---------------EEE-EEC-----------CEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKI---------------RTI-ELD-----------GKR 63 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~---------------~~~-~~~-----------~~~ 63 (164)
..-.|+|+|+.|+||||++..|...-.. .........+.+. ..+ ... -..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3467899999999999999887652100 0000000111000 000 000 123
Q ss_pred EEEEEeeCCCccccchhhh----hhc-ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 031201 64 IKLQIWDTAGQERFRTITT----AYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~----~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (164)
+.+.|+|++|......... .+. ......++|++.+. +...+...++.+... .+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~---- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG---- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----
Confidence 6799999999543222111 110 01223566777664 233333333433322 34678899999641
Q ss_pred cchHHHHHHHHHhCCcEEEEe
Q 031201 139 VPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S 159 (164)
..-.+..+....++|+..++
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT 518 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe
Confidence 12456677777787765554
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=98.00 E-value=1.1e-05 Score=60.65 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=48.4
Q ss_pred EEEEEeeCCCccccch-h---hhhhc--ccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRT-I---TTAYY--RGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~-~---~~~~~--~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
+.+.|.|++|...... + ...+. ...|..++|.|+... +..+.+..+.+.+ ..--+|.||.|.. ..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~~-~~ 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDAD-AK 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecCC-CC
Confidence 4689999999653221 1 11221 256888999998653 2333332232211 1246778999975 33
Q ss_pred CccchHHHHHHHHHhCCcEEEEe
Q 031201 137 RAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
... +..++...+.|+..++
T Consensus 295 ~G~----~ls~~~~~~~Pi~~i~ 313 (336)
T PRK14974 295 GGA----ALSIAYVIGKPILFLG 313 (336)
T ss_pred ccH----HHHHHHHHCcCEEEEe
Confidence 322 4455556788887776
No 387
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.5e-05 Score=60.02 Aligned_cols=136 Identities=23% Similarity=0.238 Sum_probs=85.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC------------CCC--cccceeeeEEEEEEEEE----------------C
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS------------FTT--SFITTIGIDFKIRTIEL----------------D 60 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~------------~~~--~~~~~~~~~~~~~~~~~----------------~ 60 (164)
.+.+.-++.++-.-..|||||-..|.... |.. ......++++.+..+.. +
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 34566788899999999999999985532 111 01111122232222211 4
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 140 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 140 (164)
+..+-+.++|.||+-.|++.....++-.|+.++|+|+.+---.+.-..+.+.+.+ .+.-++++||+|-+--+-+..
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCC
Confidence 4567899999999999999999999999999999998763211111122333333 333478889999543455566
Q ss_pred hHHHHHHHHH
Q 031201 141 TSKGQALADE 150 (164)
Q Consensus 141 ~~~~~~~~~~ 150 (164)
.++..+..++
T Consensus 171 ~EeLyqtf~R 180 (842)
T KOG0469|consen 171 QEELYQTFQR 180 (842)
T ss_pred HHHHHHHHHH
Confidence 6665444443
No 388
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=9.9e-06 Score=64.03 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=78.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC-----CCCc-----------ccceeeeEEEEEEEEECCEEEEEEEeeCCCc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS-----FTTS-----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 74 (164)
+-.+.-+|.+.-.-.+||||+-++.+... +... .....++++........-.++.+.++||||+
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 33567789999999999999999875521 1111 1111122233222222223678999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
-.|.-.....++-.|++++|++....-.-+....|.+ +..+ ++|.+..+||+|-
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDR 168 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhh
Confidence 9998888888899999999999876322223333433 3333 7899999999995
No 389
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.97 E-value=1.2e-05 Score=54.75 Aligned_cols=85 Identities=18% Similarity=0.060 Sum_probs=50.1
Q ss_pred CCCcc-ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH
Q 031201 71 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 149 (164)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (164)
+||+- +........++++|++++|+|++.+..-... .+... .. +.|.++|+||+|+.+. .. .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~----~~-~k~~ilVlNK~Dl~~~-~~--~~~~~~~~~ 72 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI----LG-NKPRIIVLNKADLADP-KK--TKKWLKYFE 72 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH----hc-CCCEEEEEehhhcCCh-HH--HHHHHHHHH
Confidence 34542 3344456678899999999999876432111 11121 12 4689999999999521 11 111112223
Q ss_pred HhCCcEEEEeccCCC
Q 031201 150 EYGIKFFETVMQRQI 164 (164)
Q Consensus 150 ~~~~~~~~~Sa~~g~ 164 (164)
..+..++.+||++|+
T Consensus 73 ~~~~~vi~iSa~~~~ 87 (171)
T cd01856 73 SKGEKVLFVNAKSGK 87 (171)
T ss_pred hcCCeEEEEECCCcc
Confidence 334578999999874
No 390
>PRK01889 GTPase RsgA; Reviewed
Probab=97.96 E-value=3.2e-05 Score=58.71 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=48.6
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
..++|.+++|+++..+-....+..++..+... +++.+||+||+||.+. .....+....+ ..+.+++.+|+++|.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~-~~~~~~~~~~~--~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCED-AEEKIAEVEAL--APGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCC-HHHHHHHHHHh--CCCCcEEEEECCCCc
Confidence 57899999999996433444566666655554 5677899999999632 11111222222 346799999999874
No 391
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.94 E-value=1.8e-05 Score=58.06 Aligned_cols=85 Identities=20% Similarity=0.107 Sum_probs=50.7
Q ss_pred CCCcc-ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH
Q 031201 71 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 149 (164)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (164)
+|||- .........++.+|++++|+|+..+.+.... .+.+.+ . +.|+++|+||+|+.+. .. .+...+...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l----~-~kp~IiVlNK~DL~~~-~~--~~~~~~~~~ 74 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR----G-NKPRLIVLNKADLADP-AV--TKQWLKYFE 74 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH----C-CCCEEEEEEccccCCH-HH--HHHHHHHHH
Confidence 46653 2333456678899999999999876442210 111111 2 5789999999999521 10 111112223
Q ss_pred HhCCcEEEEeccCCC
Q 031201 150 EYGIKFFETVMQRQI 164 (164)
Q Consensus 150 ~~~~~~~~~Sa~~g~ 164 (164)
+.+.+++.+||++|.
T Consensus 75 ~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 75 EKGIKALAINAKKGK 89 (276)
T ss_pred HcCCeEEEEECCCcc
Confidence 345678999999863
No 392
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.93 E-value=6.7e-05 Score=49.34 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=63.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECC
Q 031201 19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (164)
Q Consensus 19 ~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (164)
+.-|.+|+|||++.-.+...--. ...+..-++.. .....-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 34577899999998776542211 11111111111 0101111689999999753 333456788899999999865
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 99 DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 99 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
..++..+...++.+..... ..++.+|.|+.+-.
T Consensus 78 -~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQLR-VLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCH
Confidence 4556565566666654333 45788999999743
No 393
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.92 E-value=3.9e-05 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
||++-|++|+||||++++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.89 E-value=0.0001 Score=50.14 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=45.1
Q ss_pred EEEEEeeCCCccccch----hhhhhc--ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRT----ITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
..+.+.|++|...+.. ....+. ...+.+++|+|.....+ ...+...+..... ..-+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc-
Confidence 4588899999643211 111111 24888999999865432 1123333333222 256777999975221
Q ss_pred ccchHHHHHHHHHhCCcEE
Q 031201 138 AVPTSKGQALADEYGIKFF 156 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (164)
..+.+.+...++|+-
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 223346666777653
No 395
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=7.3e-06 Score=59.99 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=83.9
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCC---CCCcccceeeeE--EEEEEEEE-------------------------
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGID--FKIRTIEL------------------------- 59 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~--~~~~~~~~------------------------- 59 (164)
-+++..++|.-+|.-..||||+++++.+-. |..+....+++. |-...+..
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 357889999999999999999999986632 222222222211 11111110
Q ss_pred --CC------EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 031201 60 --DG------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVG 127 (164)
Q Consensus 60 --~~------~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (164)
.+ .-..+.|.|+||++-.....-.-..-.|+.++++..+. |++-+++... ++.. -..++++-
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~----LkhiiilQ 186 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK----LKHIIILQ 186 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh----hceEEEEe
Confidence 00 01367899999988554433222333455666665543 3444444321 1111 23488999
Q ss_pred eCCCCCCCCCcc-chHHHHHHHHHh---CCcEEEEeccC
Q 031201 128 NKADMDESKRAV-PTSKGQALADEY---GIKFFETVMQR 162 (164)
Q Consensus 128 nK~Dl~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~ 162 (164)
||+||..++... -.++++.|.+.. ++|++.+||+-
T Consensus 187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQl 225 (466)
T KOG0466|consen 187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQL 225 (466)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhh
Confidence 999996433332 234466666655 46999999863
No 396
>PRK13796 GTPase YqeH; Provisional
Probab=97.87 E-value=6.9e-05 Score=57.13 Aligned_cols=81 Identities=25% Similarity=0.323 Sum_probs=49.6
Q ss_pred ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH----HHHHHh
Q 031201 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALADEY 151 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 151 (164)
.|...........+.+++|+|+.+.. ..|...+..... +.|+++|+||+||.+ .....+.+. .+++..
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhc
Confidence 44444444333334899999998743 124444444433 678999999999963 222233333 345556
Q ss_pred CC---cEEEEeccCCC
Q 031201 152 GI---KFFETVMQRQI 164 (164)
Q Consensus 152 ~~---~~~~~Sa~~g~ 164 (164)
++ .++.+||++|.
T Consensus 130 g~~~~~v~~vSAk~g~ 145 (365)
T PRK13796 130 GLRPVDVVLISAQKGH 145 (365)
T ss_pred CCCcCcEEEEECCCCC
Confidence 66 58999999873
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.87 E-value=2.7e-05 Score=57.13 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.+++|++|+|||||+|+|..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 568899999999999999987
No 398
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.84 E-value=1.4e-05 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.||+|+|+||+||||+++.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 399
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.83 E-value=0.00042 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.=.+|.|.-|||||||+|+++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 44678899999999999999764
No 400
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.83 E-value=1.7e-05 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 401
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.83 E-value=0.0003 Score=49.04 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=47.6
Q ss_pred EEEEEeeCCCccccchh----hhhhcc--cccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~----~~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
+.+.|.||+|....... +..++. ..+-+++|.+++.. +..+.+..+.+.+ ++ --++.||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------~~-~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------GI-DGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS------ST-CEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc------cC-ceEEEEeecCCC--
Confidence 46899999996543221 122222 46678889998753 3343333333222 11 256689999641
Q ss_pred CccchHHHHHHHHHhCCcEEEEe
Q 031201 137 RAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
..-.+..+....+.|+-.++
T Consensus 155 ---~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 ---RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ---TTHHHHHHHHHHTSEEEEEE
T ss_pred ---CcccceeHHHHhCCCeEEEE
Confidence 12346777778888765554
No 402
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.82 E-value=6e-06 Score=58.21 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=44.1
Q ss_pred EEEEEEeeCCCccccchhhhhhcccccEEEEEEECCC----------hHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCC
Q 031201 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKAD 131 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 131 (164)
.+.+.+.|.+|+..-+..|..++++.-.++++..++. ++..++-..+...+..+. -.+.++|+..||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 3456788888887777777777777666666554442 233333333333332221 24788999999999
Q ss_pred CC
Q 031201 132 MD 133 (164)
Q Consensus 132 l~ 133 (164)
+-
T Consensus 278 lL 279 (359)
T KOG0085|consen 278 LL 279 (359)
T ss_pred hh
Confidence 84
No 403
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=3.6e-05 Score=58.32 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=90.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC-------------------Cc----------ccceeeeEEEEEEEEECC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------TS----------FITTIGIDFKIRTIELDG 61 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~----------~~~~~~~~~~~~~~~~~~ 61 (164)
.+...+++.++|.-.+||||+-..+...... .. .....+.+...-...+.-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 4567899999999999999998776432100 00 000011122222333333
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCC---hHHHHHHHHHHHH--HHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~--~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
....+.+.|.||+..|......-..++|+-++|+++.. +..|+.=-+..+. +..... -...++++||+|-+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence 44689999999999998877777889999999998743 2234332121111 222222 35688999999975322
Q ss_pred Cc-cchHH----HHHHHHHh------CCcEEEEeccCCC
Q 031201 137 RA-VPTSK----GQALADEY------GIKFFETVMQRQI 164 (164)
Q Consensus 137 ~~-~~~~~----~~~~~~~~------~~~~~~~Sa~~g~ 164 (164)
+. -..++ ...|.+.. ...|+.||..+|.
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~ 272 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGA 272 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeeccccccc
Confidence 22 22222 33444433 2468899988873
No 404
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.81 E-value=0.0002 Score=44.51 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=49.9
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 18 LLLIG-DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 18 i~v~G-~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
|++.| ..|+||||+...+...--. ...+..-++. +.. +.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~-------d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDL-------DPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeC-------CCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56777 5589999998876552211 1111111111 111 67899999986432 23356778999999987
Q ss_pred CCChHHHHHHHHHHH
Q 031201 97 VTDESSFNNIRNWIR 111 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (164)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 556666666655
No 405
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=1.8e-05 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.||+|+|++|||||||++.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999874
No 406
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.80 E-value=0.00022 Score=46.35 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
.-.++|.|++|+|||++++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999988543
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00051 Score=52.69 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=69.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCc-------ccc--------------eeeeEEEEEE----E--EE---C-CEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTS-------FIT--------------TIGIDFKIRT----I--EL---D-GKR 63 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~~--------------~~~~~~~~~~----~--~~---~-~~~ 63 (164)
...|+++|+.|+||||++..|...-.... .++ ..++.+.... + .+ . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 35799999999999999999864211000 000 0000110000 0 00 0 012
Q ss_pred EEEEEeeCCCccccchh----hhhhcc--cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
+.+.|.|++|....... ...++. ..+.+++|.|++.. ...+..+.+.+... ..--+|.||.|-. ..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET-~k- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDET-AS- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCC-CC-
Confidence 57899999996432211 122222 34667888887532 12333344444331 2246777999965 22
Q ss_pred ccchHHHHHHHHHhCCcEEEEe
Q 031201 138 AVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.=.+..++...++|+..++
T Consensus 393 ---~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 393 ---SGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred ---ccHHHHHHHHHCcCEEEEe
Confidence 2235667777787765544
No 408
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.77 E-value=4.5e-05 Score=56.29 Aligned_cols=84 Identities=23% Similarity=0.203 Sum_probs=50.8
Q ss_pred CCCcc-ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH
Q 031201 71 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 149 (164)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (164)
+|||- .........++.+|++++|+|+..+.+.+. .++.. ... +.|+++|+||+|+.+. .. .+...++.+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~---~~~-~kp~iiVlNK~DL~~~--~~-~~~~~~~~~ 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDK---IIG-NKPRLLILNKSDLADP--EV-TKKWIEYFE 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHH---HhC-CCCEEEEEEchhcCCH--HH-HHHHHHHHH
Confidence 56654 223335566889999999999987644221 11111 112 5789999999999521 11 111222223
Q ss_pred HhCCcEEEEeccCC
Q 031201 150 EYGIKFFETVMQRQ 163 (164)
Q Consensus 150 ~~~~~~~~~Sa~~g 163 (164)
+.+.+++.+||++|
T Consensus 78 ~~~~~vi~vSa~~~ 91 (287)
T PRK09563 78 EQGIKALAINAKKG 91 (287)
T ss_pred HcCCeEEEEECCCc
Confidence 44677899999886
No 409
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.75 E-value=0.00013 Score=55.17 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC------------------CcccceeeeEEE--------------------
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFK-------------------- 53 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~~~~~~~~-------------------- 53 (164)
.-..++++++|...+|||||+-.|++.... ....++.+-++.
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 345789999999999999999887654321 111111111111
Q ss_pred EEEEEECCEEEEEEEeeCCCccccchhhhhh--cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031201 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 54 ~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (164)
...+.-+. .--++|+|..|++.|-...-.- -...|..++++-++-- .--+ ..+.+.....-.+|+.+|+||+|
T Consensus 210 WvkIce~s-aKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGm--TKEHLgLALaL~VPVfvVVTKID 284 (641)
T KOG0463|consen 210 WVKICEDS-AKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGM--TKEHLGLALALHVPVFVVVTKID 284 (641)
T ss_pred ceeecccc-ceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceec--cHHhhhhhhhhcCcEEEEEEeec
Confidence 11111111 2258899999998876533222 2235666666654421 0000 11222112222688888888888
Q ss_pred CC
Q 031201 132 MD 133 (164)
Q Consensus 132 l~ 133 (164)
+-
T Consensus 285 MC 286 (641)
T KOG0463|consen 285 MC 286 (641)
T ss_pred cC
Confidence 73
No 410
>PRK07261 topology modulation protein; Provisional
Probab=97.74 E-value=2.7e-05 Score=53.05 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+|+|+|++|+|||||++.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 411
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=0.00019 Score=52.75 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=57.9
Q ss_pred hhhhhhcccccEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEE
Q 031201 79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
.+.+.-..+.|-.++|+++.+|+ +...+.+++-..... ++.-++|+||+||.+...... ++....-...+.+.+.
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLF 146 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEE
Confidence 33444455788899999999886 566666666655544 566788899999974333222 5566677778999999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
+|+++++
T Consensus 147 ~s~~~~~ 153 (301)
T COG1162 147 VSAKNGD 153 (301)
T ss_pred ecCcCcc
Confidence 9999863
No 412
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.70 E-value=0.0006 Score=41.20 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=53.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh-hhhhcccccEEEEEEE
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD 96 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-~~~~~~~~~~~i~v~d 96 (164)
+++.|.+|+||||+...+...--... . +...++ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-K---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-C---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988766321111 1 111112 6889999985432221 1345567888888887
Q ss_pred CCChHHHHHHHHHHHHH-HHhcCCCCcEEEEEe
Q 031201 97 VTDESSFNNIRNWIRNI-EQHASDNVNKVLVGN 128 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~n 128 (164)
.... +........+.. ........+..++.|
T Consensus 68 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEAL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cchh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 6643 333433332222 222223445555544
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00092 Score=51.78 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=67.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCC---CcccceeeeEEEEE---------------EE-EE-----------CCEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIR---------------TI-EL-----------DGKRI 64 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~---------------~~-~~-----------~~~~~ 64 (164)
.-.|+++|+.|+||||++..|.+.... .........+.+.. .+ .. .-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999988653110 00000001111000 00 00 00123
Q ss_pred EEEEeeCCCccccc----hhhhhhc--ccccEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 65 KLQIWDTAGQERFR----TITTAYY--RGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 65 ~~~l~d~~g~~~~~----~~~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
.+.+.|++|..... .....+. ....-.++|.|++. .+...++ ...+.. -..-=+|.||.|-.. .
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~----~~~~~~I~TKlDEt~-~- 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG----HGIHGCIITKVDEAA-S- 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC----CCCCEEEEEeeeCCC-C-
Confidence 67899999954321 1122221 12345778899874 3334332 222221 122356779999642 1
Q ss_pred ccchHHHHHHHHHhCCcEEEEe
Q 031201 138 AVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.-.+..++...++|+..++
T Consensus 342 ---~G~~l~~~~~~~lPi~yvt 360 (420)
T PRK14721 342 ---LGIALDAVIRRKLVLHYVT 360 (420)
T ss_pred ---ccHHHHHHHHhCCCEEEEE
Confidence 2235666677777665544
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.66 E-value=0.0016 Score=50.65 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=49.2
Q ss_pred EEEEEeeCCCccccchh----hhhh--cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
+.+.|.||+|....... ...+ .-..+.+++|+|..... ........+....+ ..=+|.||.|-. ...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~-~~~ 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGD-ARG 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCc-ccc
Confidence 56899999996433221 1111 22467789999987532 22223333332222 235668999954 222
Q ss_pred ccchHHHHHHHHHhCCcEEEEec
Q 031201 138 AVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
. .+...+...++|+..+..
T Consensus 256 G----~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 G----AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred c----HHHHHHHHHCcCEEEEeC
Confidence 2 277777888888766553
No 415
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.65 E-value=4.1e-05 Score=50.27 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031201 18 LLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~ 37 (164)
|+++|++|||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 416
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.65 E-value=0.00054 Score=42.87 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=58.1
Q ss_pred cCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH
Q 031201 22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES 101 (164)
Q Consensus 22 G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (164)
+..|+||||+.-.|...--........-.+.... .. ..+.+.|+|+.... .....+..+|.++++.+.+ +.
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~---~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FG---DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CC---CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 4567999998877654221110111111111100 01 17899999986432 2334567889999888754 55
Q ss_pred HHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 031201 102 SFNNIRNWIRNIEQHASD-NVNKVLVGNK 129 (164)
Q Consensus 102 s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 129 (164)
+...+..+.+.+...... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 677777777777665443 4567788775
No 417
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=5.8e-05 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
|+|+|++|||||||++.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999988543
No 418
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.63 E-value=0.0036 Score=42.37 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=86.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
..+..+...|+++|..+.++..|.+.+...+. ++..+-..... .++ |. +.... -...
T Consensus 9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l~Vh~a~s--LPL-----p~--e~~~l----RprI 65 (176)
T PF11111_consen 9 KLPELNTATILLVGTEEALLQQLAEAMLEEDK----------EFKLKVHLAKS--LPL-----PS--ENNNL----RPRI 65 (176)
T ss_pred cCCCcceeEEEEecccHHHHHHHHHHHHhhcc----------ceeEEEEEecc--CCC-----cc--cccCC----Ccee
Confidence 45667899999999999999999999987221 11111111111 010 11 11111 2258
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
|.++|++|.++..|++.++.-+..+.....- -.++++++-..-. ....+..+++.+++..+++|+..+-
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~ 134 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFAD 134 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEee
Confidence 9999999999999999998877777554432 3477777766654 5577888999999999999987653
No 419
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.63 E-value=0.00026 Score=50.97 Aligned_cols=95 Identities=23% Similarity=0.232 Sum_probs=59.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-------hhhhhccc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRG 87 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-------~~~~~~~~ 87 (164)
.+|.++|.|.+||||++..+.+..-+. .+..+. .+.-.-.+.+++ -.+++.|.||.-+-.. ......+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt-l~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT-LTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccccccee-EEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 489999999999999999999854433 222221 112122223333 4689999999432111 12234567
Q ss_pred ccEEEEEEECCChHHHHHHHH-HHHHH
Q 031201 88 AMGILLVYDVTDESSFNNIRN-WIRNI 113 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~ 113 (164)
|+++++|.|+..|-+-..+.. .++-+
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~ 163 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGF 163 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcc
Confidence 999999999998876544433 44444
No 420
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.63 E-value=0.0014 Score=49.08 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=47.8
Q ss_pred EEEEEeeCCCccccchhhhhhc--------ccccEEEEEEECCChHH-HHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 64 IKLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRN-WIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
....++++.|-..-......+. -..|.+|-|+|+.+-.. ...+.. ..+++... =+|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 3466777777433222222111 23577999999876432 222222 23333221 27888999998
Q ss_pred CCCCccchHHHHHHHHHhC--CcEEEEec
Q 031201 134 ESKRAVPTSKGQALADEYG--IKFFETVM 160 (164)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (164)
++. . .+..+...+..+ ++++.+|.
T Consensus 159 ~~~-~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAE-E--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHH-H--HHHHHHHHHHhCCCCeEEEccc
Confidence 433 2 444555556654 47777665
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.0009 Score=52.07 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=47.6
Q ss_pred EEEEEeeCCCccccc----hhhhhhcc---cccEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 64 IKLQIWDTAGQERFR----TITTAYYR---GAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
+.+.|.|++|..... .....++. ...-..+|++.+. ...+.+ ....+... + +--++.||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~---~~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD---IYKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH---HHHHhCCC---C-CCEEEEecccccc-
Confidence 578999999964332 12223333 2335677888754 333333 33333211 1 2367889999642
Q ss_pred CCccchHHHHHHHHHhCCcEEEEe
Q 031201 136 KRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
. .-.+.++....++|+..++
T Consensus 372 ~----~G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 372 S----LGSILSLLIESGLPISYLT 391 (424)
T ss_pred c----ccHHHHHHHHHCCCEEEEe
Confidence 1 2247778888888776554
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00042 Score=52.86 Aligned_cols=85 Identities=9% Similarity=0.080 Sum_probs=46.0
Q ss_pred EEEEEeeCCCccccchh----hhhhcc--cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
+.+.|.||+|....... ...+.. ..+.+++|.+.+. ...++..++..+. . -.+--+|.||.|-. ..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~---~-l~i~glI~TKLDET-~~- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA---E-IPIDGFIITKMDET-TR- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC---c-CCCCEEEEEcccCC-CC-
Confidence 58899999997433221 222222 3355566766532 2223333333322 1 12346678999964 21
Q ss_pred ccchHHHHHHHHHhCCcEEEEe
Q 031201 138 AVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.=.+..++...++|+..++
T Consensus 358 ---~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 358 ---IGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred ---ccHHHHHHHHHCCCEEEEe
Confidence 2336677777888766555
No 423
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.59 E-value=6.3e-05 Score=56.85 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=44.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
..-+++.|+|-|++||||++|+|..+..... ....+++.....+..+. .+.|.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence 6789999999999999999999998776433 22334445556666655 789999999
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00076 Score=55.71 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=69.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCc---ccceeeeEEEEE---------------EE-EE-----------CCEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTS---FITTIGIDFKIR---------------TI-EL-----------DGKRIK 65 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~~~~~~~~~~---------------~~-~~-----------~~~~~~ 65 (164)
--|+++|+.|+||||.+..|...-.... ...-.+.+.+.. .+ .. .-..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3689999999999999998876321110 001111111110 00 00 012246
Q ss_pred EEEeeCCCccccc----hhhhhh--cccccEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 031201 66 LQIWDTAGQERFR----TITTAY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (164)
Q Consensus 66 ~~l~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (164)
+.|+||+|..... ...... ....+-.++|.|.+. .+.+.++ .+.+......+ +-=+|+||.|-. ...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDEt-~~~- 339 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDEA-THL- 339 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCCC-CCc-
Confidence 8999999943221 111111 123456788999875 2334333 33332221111 235677999965 222
Q ss_pred cchHHHHHHHHHhCCcEEEEe
Q 031201 139 VPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S 159 (164)
=.+..+....++|+..++
T Consensus 340 ---G~iL~i~~~~~lPI~yit 357 (767)
T PRK14723 340 ---GPALDTVIRHRLPVHYVS 357 (767)
T ss_pred ---cHHHHHHHHHCCCeEEEe
Confidence 235666677777765554
No 425
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00011 Score=52.78 Aligned_cols=88 Identities=15% Similarity=0.275 Sum_probs=54.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-EEEEEEEeeCCCccccchhhhhhccc---
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRG--- 87 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~--- 87 (164)
.+...-|++.|..+ ||++++++..+..... .++...+|........+ ..-...+|+.+|......+..--+..
T Consensus 42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGG--KTTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCc--eeEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 35667888888665 6999999888765443 44555555433322222 22356799999976555543322221
Q ss_pred -ccEEEEEEECCChHH
Q 031201 88 -AMGILLVYDVTDESS 102 (164)
Q Consensus 88 -~~~~i~v~d~~~~~s 102 (164)
.=.+|++.|+++++.
T Consensus 119 ~~~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPND 134 (363)
T ss_pred hhhhheeeeecCChHH
Confidence 123889999999764
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.56 E-value=9.5e-05 Score=41.50 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
..+|.|+.|+||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998765
No 427
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.55 E-value=9.6e-05 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFT 41 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~ 41 (164)
-++|+||+|||||||+|-+.+-.-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4789999999999999999885544
No 428
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.54 E-value=0.00057 Score=37.54 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=28.0
Q ss_pred ccccEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031201 86 RGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (164)
.-.+.+++++|.+.... .++=..+++.++...+ +.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 34678999999997553 3333346666766665 799999999998
No 429
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.54 E-value=9.2e-05 Score=42.63 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 430
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.54 E-value=0.00026 Score=55.11 Aligned_cols=84 Identities=19% Similarity=0.090 Sum_probs=47.9
Q ss_pred EEEEEeeCCCccccchhh----hhh--cccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
..+.|.||+|........ ..+ ....|.+++|+|++.. +.++ ..+.+....+ ..-+|.||.|-. ..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~----~a~~F~~~l~---i~gvIlTKlD~~-a~ 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN----QAKAFHEAVG---IGGIIITKLDGT-AK 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHH----HHHHHHhcCC---CCEEEEecccCC-Cc
Confidence 378999999966543211 111 2357889999998653 2222 2222322111 235677999964 22
Q ss_pred CccchHHHHHHHHHhCCcEEEEe
Q 031201 137 RAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
. =.+..+....+.|+..++
T Consensus 248 ~----G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 248 G----GGALSAVAETGAPIKFIG 266 (437)
T ss_pred c----cHHHHHHHHHCcCEEEEe
Confidence 2 225666677777776554
No 431
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0011 Score=51.35 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=67.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC-CCCc---------------------ccceeeeEEEEEE-E-----EECCEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGS-FTTS---------------------FITTIGIDFKIRT-I-----ELDGKRIKL 66 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~ 66 (164)
..-++++|++|+||||++..|.... .... +....++...... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999999886521 0000 0000011111000 0 001123578
Q ss_pred EEeeCCCccccc-h---hhhhhcc-----cccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 67 QIWDTAGQERFR-T---ITTAYYR-----GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 67 ~l~d~~g~~~~~-~---~~~~~~~-----~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
.|+|++|..... . .+..++. ...-.++|.|++.. +....+. ..+... .+--+|.||.|-. ..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~---~~f~~~----~~~glIlTKLDEt-~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL---KAYESL----NYRRILLTKLDEA-DF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH---HHhcCC----CCCEEEEEcccCC-CC
Confidence 999999964221 1 1222222 23457889998753 2333332 222111 2235677999964 22
Q ss_pred CccchHHHHHHHHHhCCcEEEEe
Q 031201 137 RAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
. =.+..+....+.|+..++
T Consensus 375 ~----G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 L----GSFLELADTYSKSFTYLS 393 (432)
T ss_pred c----cHHHHHHHHHCCCEEEEe
Confidence 2 225666667777765544
No 432
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.53 E-value=6e-05 Score=50.82 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999875
No 433
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=8.5e-05 Score=47.85 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~ 39 (164)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998853
No 434
>PRK10867 signal recognition particle protein; Provisional
Probab=97.53 E-value=0.0018 Score=50.51 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=47.9
Q ss_pred EEEEEeeCCCccccchh-h---hhh--cccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRTI-T---TAY--YRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
+.+.|.||+|....... . ..+ .-..+.+++|.|.... +..+.+..+.+ .. ++ .-+|.||.|-. ..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~----~~--~i-~giIlTKlD~~-~r 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNE----AL--GL-TGVILTKLDGD-AR 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHh----hC--CC-CEEEEeCccCc-cc
Confidence 57899999996533221 1 111 1145678999998653 23333333332 21 11 35667999964 22
Q ss_pred CccchHHHHHHHHHhCCcEEEEec
Q 031201 137 RAVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
.. .+.......++|+..++.
T Consensus 256 gG----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 GG----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred cc----HHHHHHHHHCcCEEEEeC
Confidence 22 266777778888766553
No 435
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.52 E-value=0.0016 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
=.++++|+.|+|||||++.+.+-..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3688999999999999999998543
No 436
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.51 E-value=0.0016 Score=49.82 Aligned_cols=113 Identities=18% Similarity=0.253 Sum_probs=62.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC---CCcccceeeeEEEEEE-----------------EEE----------CCEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRT-----------------IEL----------DGKRI 64 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~----------~~~~~ 64 (164)
.-.|+++||.|+||||-+-.|..+-. ......-++.|.+... +.. .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 66789999999999998877765332 1112222222222110 000 01224
Q ss_pred EEEEeeCCCccccchh----hhhhcccc--cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 65 KLQIWDTAGQERFRTI----TTAYYRGA--MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 65 ~~~l~d~~g~~~~~~~----~~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.+.|.||.|...+... ...++.-+ .-.-+|++++. ..+.++..++.+....- --+++||.|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i----~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPI----DGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCCc----ceeEEEccccc
Confidence 7899999996654432 33344333 23455777664 34455556665544322 24567999964
No 437
>PRK06217 hypothetical protein; Validated
Probab=97.49 E-value=0.0001 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 438
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.48 E-value=0.0001 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999999844
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.47 E-value=9.9e-05 Score=51.69 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
.++|+||+|||||||++.+-+-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 588999999999999999876443
No 440
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.47 E-value=0.00016 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
++...-|+|.|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999976
No 441
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.45 E-value=0.0012 Score=48.78 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc---------------
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------------- 75 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--------------- 75 (164)
......+++|+|++|.|||+++++|....-+ ..+.. ...+++...++|...
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 3445567999999999999999999985432 22211 112355555555411
Q ss_pred ---------ccchhhhhhcccccEEEEEEECCC-h--HHHHHHHHHHHHHHHhcC-CCCcEEEEEeC
Q 031201 76 ---------RFRTITTAYYRGAMGILLVYDVTD-E--SSFNNIRNWIRNIEQHAS-DNVNKVLVGNK 129 (164)
Q Consensus 76 ---------~~~~~~~~~~~~~~~~i~v~d~~~-~--~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK 129 (164)
.........++....=++++|--. - -+...-+.++..++.... -++|++.+|++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 111122345677788888998432 1 122232334444443322 36899999875
No 442
>PRK03839 putative kinase; Provisional
Probab=97.44 E-value=0.00012 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
+|+|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 443
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.43 E-value=0.00029 Score=51.78 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=38.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC----cccceeeeEEEEEE-EEECCEEEEEEEeeCCCc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT----SFITTIGIDFKIRT-IELDGKRIKLQIWDTAGQ 74 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~l~d~~g~ 74 (164)
.+..+++.|+|-||+|||||+|.+.....-. ......+++..... +.+.... .+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 4678999999999999999999886632211 11111122232222 3333333 6889999993
No 444
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.43 E-value=9.1e-05 Score=52.40 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=37.6
Q ss_pred EEEEEeeCCCccccch----hh--hhhcccccEEEEEEEC------CChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031201 64 IKLQIWDTAGQERFRT----IT--TAYYRGAMGILLVYDV------TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~----~~--~~~~~~~~~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (164)
-.+.++|+||+-++-. ++ -.+++..+.-++++.+ ++|..|- ...+-.+.....-..|-+=|..|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhH
Confidence 3688999999754321 11 1123335554444443 4565543 2333344333333677888889999
Q ss_pred CC
Q 031201 132 MD 133 (164)
Q Consensus 132 l~ 133 (164)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 84
No 445
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0038 Score=45.70 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=70.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC---------------------cccceeeeEEEEEEEE----------E-CCEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT---------------------SFITTIGIDFKIRTIE----------L-DGKR 63 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~----------~-~~~~ 63 (164)
-+++++|++|+||||++..+...-... .+....++.+... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 599999999999999998775421000 0000011111100 00 0 1123
Q ss_pred EEEEEeeCCCccccch-h---hhhhcc--cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRT-I---TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~-~---~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
+.+.|.|++|...... . +..++. ..+-.++|.|++.. .+.+..+...+.. -.+--++.||.|-.. .
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~-~- 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA-S- 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC-C-
Confidence 6889999999653221 1 122222 34568889998632 1222233333322 122467779999652 2
Q ss_pred ccchHHHHHHHHHhCCcEEEEe
Q 031201 138 AVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.-.+..++...+.|+..++
T Consensus 227 ---~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 ---SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred ---ccHHHHHHHHHCcCEEEEe
Confidence 1235667777788766554
No 446
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=0.00016 Score=46.50 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT 42 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~ 42 (164)
-.++++|++|+|||+++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998855443
No 447
>PRK14530 adenylate kinase; Provisional
Probab=97.41 E-value=0.00014 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
+|+|+|++||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999965
No 448
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.00013 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
++++||+|||||||++.+.+-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999988443
No 449
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.39 E-value=0.00017 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.|+|+|++|+|||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997753
No 450
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.38 E-value=0.00016 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.|+|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998774
No 451
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.37 E-value=0.00016 Score=46.36 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999774
No 452
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.37 E-value=0.00016 Score=52.21 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
++|+||.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999883
No 453
>PRK14532 adenylate kinase; Provisional
Probab=97.35 E-value=0.00018 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999763
No 454
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.35 E-value=0.001 Score=43.34 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998853
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.34 E-value=0.0002 Score=47.03 Aligned_cols=21 Identities=52% Similarity=0.775 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 456
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.34 E-value=0.00027 Score=49.63 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.....|+|.|++|||||||++.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999998763
No 457
>PRK13949 shikimate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
+|+|+|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988763
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.32 E-value=0.00022 Score=47.03 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.|+|+|+.++|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.32 E-value=0.0002 Score=49.88 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998663
No 460
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.32 E-value=0.00021 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-|+|+|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999884
No 461
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.32 E-value=0.003 Score=43.11 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccch
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 141 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (164)
..+.+.|+|+|+... ......+..+|.++++...+ ..+...+..+++.+... +.|+.+|+||.|.... ..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~----~~ 160 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE----IA 160 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc----hH
Confidence 457899999997542 22334567899999999876 34555666666666543 4678899999996421 24
Q ss_pred HHHHHHHHHhCCcEEE
Q 031201 142 SKGQALADEYGIKFFE 157 (164)
Q Consensus 142 ~~~~~~~~~~~~~~~~ 157 (164)
++++++.++.+++++-
T Consensus 161 ~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 161 EEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHcCCCeEE
Confidence 5677888888887653
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.32 E-value=0.00029 Score=49.45 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+....-|+|+|++|+|||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445566889999999999999999754
No 463
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.31 E-value=0.0002 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|+|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.31 E-value=0.00022 Score=44.61 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~ 36 (164)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999986
No 465
>PRK14531 adenylate kinase; Provisional
Probab=97.30 E-value=0.00024 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+|+++|+|||||||+.+.|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998663
No 466
>PRK08233 hypothetical protein; Provisional
Probab=97.29 E-value=0.00023 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-|+|.|++|||||||++.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999763
No 467
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.28 E-value=0.00024 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
++|+|+|+|||||||+...|...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998663
No 468
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.28 E-value=0.00025 Score=46.44 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.|+++|++|+|||++++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998773
No 469
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.28 E-value=0.00022 Score=49.29 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
+|+|+|++||||||+++.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 470
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0002 Score=50.18 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.+++||+|||||||++.|=.
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 358999999999999988744
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.27 E-value=0.00028 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.++|+|++|+|||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999998863
No 472
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.27 E-value=0.00035 Score=47.89 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT 41 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~ 41 (164)
=.++|+|++|+|||||+|-+.+=..+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCC
Confidence 36899999999999999999874443
No 473
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.27 E-value=0.00027 Score=50.61 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
--+..++++|+|++|||||+|+..++..
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999988763
No 474
>PRK02496 adk adenylate kinase; Provisional
Probab=97.26 E-value=0.0003 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+|+|+|++||||||+++.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 475
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00023 Score=48.65 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.=+++.||+|+||||+++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999876
No 476
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.26 E-value=0.00025 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
|+|+|+|||||||++..|...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 477
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.26 E-value=0.00024 Score=50.44 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031201 18 LLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~ 37 (164)
|+|.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 478
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.25 E-value=0.011 Score=39.99 Aligned_cols=64 Identities=16% Similarity=-0.036 Sum_probs=42.0
Q ss_pred EEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 65 ~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.+.|+|+|+.... .....+..+|.+|++.+.+. .++..+..+++.+.... .....+|.|+.+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccc
Confidence 6899999985432 23344678999999987653 45555555555555421 23467889999864
No 479
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.25 E-value=0.00024 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 480
>PLN02200 adenylate kinase family protein
Probab=97.25 E-value=0.00046 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.....|+|+|+|||||||++..|..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.24 E-value=0.0023 Score=44.62 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~ 39 (164)
|+|.|++||||||+++.+.+.-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 482
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.24 E-value=0.0003 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999854
No 483
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.24 E-value=0.0024 Score=45.38 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=32.9
Q ss_pred hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
-+...+++|.+|+|.|-+. .++...+++.+...+.. =.++.+|+||.|-
T Consensus 149 gRg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e 197 (255)
T COG3640 149 GRGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDE 197 (255)
T ss_pred ccccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccc
Confidence 3445678999999999774 45544444444333332 2679999999994
No 484
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00027 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
++++||+||||||+++.+.+=..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999988443
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.22 E-value=0.00032 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=97.22 E-value=0.00048 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
-+++++|++|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3789999999999999999987543
No 487
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.21 E-value=0.00034 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
No 488
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.20 E-value=0.00036 Score=48.20 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.-.++|+|+.|+||||+++.+++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999998743
No 489
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0095 Score=45.88 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=45.4
Q ss_pred EEEEEEeeCCCccccch----hhhhhcccc--c-EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 63 RIKLQIWDTAGQERFRT----ITTAYYRGA--M-GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~----~~~~~~~~~--~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
.+.+.|.|++|...... ....++... + -.++|.|++.. ...+...+..+... .+--++.||.|-. .
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet-~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDET-T 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCC-C
Confidence 35799999999653221 112222221 2 47889998764 22333333333211 2346777999964 2
Q ss_pred CCccchHHHHHHHHHhCCcEEEEe
Q 031201 136 KRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.. =.+..+....+.|+..++
T Consensus 327 ~~----G~~l~~~~~~~~Pi~yit 346 (388)
T PRK12723 327 CV----GNLISLIYEMRKEVSYVT 346 (388)
T ss_pred cc----hHHHHHHHHHCCCEEEEe
Confidence 22 224556666666654443
No 490
>PRK06547 hypothetical protein; Provisional
Probab=97.20 E-value=0.00043 Score=47.22 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.....|+|.|++||||||+.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678889999999999999999764
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.20 E-value=0.00035 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 492
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.00035 Score=49.94 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 493
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.19 E-value=0.00037 Score=49.04 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999853
No 494
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00033 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999843
No 495
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00076 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFT 41 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~ 41 (164)
-++++|++|||||||+|-+.+-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCc
Confidence 3789999999999999999884433
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.18 E-value=0.00035 Score=48.31 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 497
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.18 E-value=0.00034 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
--|+|+|++|||||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999874
No 498
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.18 E-value=0.00038 Score=48.99 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998854
No 499
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00035 Score=50.35 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-++|+||.|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999993
No 500
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.17 E-value=0.00029 Score=47.43 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
|+++|++||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999875
Done!