Query 031201
Match_columns 164
No_of_seqs 115 out of 1568
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.4E-39 4.9E-44 228.4 17.5 152 12-164 10-161 (216)
2 2hup_A RAS-related protein RAB 100.0 4.2E-35 1.4E-39 203.6 18.4 156 8-164 22-178 (201)
3 2gf9_A RAS-related protein RAB 100.0 1.8E-34 6.2E-39 198.3 20.8 158 6-164 13-170 (189)
4 2ew1_A RAS-related protein RAB 100.0 1.2E-34 4.2E-39 201.5 19.7 154 10-164 21-174 (201)
5 2fu5_C RAS-related protein RAB 100.0 4.6E-35 1.6E-39 200.1 17.3 154 10-164 3-156 (183)
6 2a5j_A RAS-related protein RAB 100.0 1.9E-34 6.6E-39 198.6 20.2 155 9-164 15-169 (191)
7 2bme_A RAB4A, RAS-related prot 100.0 2.4E-34 8.2E-39 196.9 20.0 157 7-164 2-158 (186)
8 3tkl_A RAS-related protein RAB 100.0 6.5E-34 2.2E-38 196.2 21.2 155 9-164 10-164 (196)
9 1z0f_A RAB14, member RAS oncog 100.0 4.1E-34 1.4E-38 194.3 19.5 155 9-164 9-163 (179)
10 3tw8_B RAS-related protein RAB 100.0 6.7E-34 2.3E-38 193.5 19.8 155 8-164 2-156 (181)
11 2oil_A CATX-8, RAS-related pro 100.0 6.8E-34 2.3E-38 196.0 19.5 155 9-164 19-173 (193)
12 2bcg_Y Protein YP2, GTP-bindin 100.0 1.2E-33 4.1E-38 196.6 20.8 153 11-164 4-156 (206)
13 1r2q_A RAS-related protein RAB 100.0 1.1E-33 3.8E-38 190.5 19.7 152 12-164 3-154 (170)
14 2efe_B Small GTP-binding prote 100.0 1.8E-33 6.2E-38 191.6 20.9 154 10-164 7-160 (181)
15 1zbd_A Rabphilin-3A; G protein 100.0 2.9E-33 1E-37 194.2 21.6 153 11-164 4-156 (203)
16 2il1_A RAB12; G-protein, GDP, 100.0 3.8E-34 1.3E-38 197.4 16.9 156 8-164 19-175 (192)
17 1ek0_A Protein (GTP-binding pr 100.0 2.4E-33 8.3E-38 188.8 20.3 151 14-164 2-154 (170)
18 1z08_A RAS-related protein RAB 100.0 6.2E-34 2.1E-38 192.0 17.4 152 12-164 3-154 (170)
19 2fg5_A RAB-22B, RAS-related pr 100.0 8.1E-34 2.8E-38 195.7 18.3 155 9-164 17-171 (192)
20 2o52_A RAS-related protein RAB 100.0 6.4E-34 2.2E-38 197.5 17.3 154 10-164 20-173 (200)
21 3q3j_B RHO-related GTP-binding 100.0 1.1E-33 3.8E-38 198.3 18.6 156 7-164 19-187 (214)
22 3dz8_A RAS-related protein RAB 100.0 5.1E-35 1.7E-39 201.5 11.4 154 10-164 18-171 (191)
23 1z0j_A RAB-22, RAS-related pro 100.0 4E-33 1.4E-37 187.9 20.4 151 13-164 4-154 (170)
24 1z06_A RAS-related protein RAB 100.0 1.6E-33 5.4E-38 193.6 18.7 153 10-163 15-169 (189)
25 3kkq_A RAS-related protein M-R 100.0 3.3E-33 1.1E-37 190.8 20.1 155 8-164 11-167 (183)
26 2g6b_A RAS-related protein RAB 100.0 5.3E-33 1.8E-37 189.1 20.5 154 10-164 5-159 (180)
27 1g16_A RAS-related protein SEC 100.0 1.7E-33 5.9E-38 189.7 17.7 149 14-164 2-150 (170)
28 2p5s_A RAS and EF-hand domain 100.0 8.3E-34 2.8E-38 196.6 16.4 155 10-164 23-182 (199)
29 2y8e_A RAB-protein 6, GH09086P 100.0 4.6E-33 1.6E-37 189.1 18.9 151 13-164 12-162 (179)
30 1z2a_A RAS-related protein RAB 100.0 3.2E-33 1.1E-37 188.0 17.7 150 13-164 3-152 (168)
31 2f7s_A C25KG, RAS-related prot 100.0 1.3E-33 4.6E-38 197.8 16.4 155 9-164 19-184 (217)
32 3t5g_A GTP-binding protein RHE 100.0 7.3E-33 2.5E-37 188.8 19.5 151 12-164 3-154 (181)
33 3c5c_A RAS-like protein 12; GD 100.0 4.1E-33 1.4E-37 191.5 18.3 151 10-163 16-170 (187)
34 3cbq_A GTP-binding protein REM 100.0 2.3E-33 7.9E-38 194.1 17.0 154 10-164 18-173 (195)
35 2fn4_A P23, RAS-related protei 100.0 7.7E-33 2.6E-37 188.2 19.0 154 9-164 3-157 (181)
36 3cpj_B GTP-binding protein YPT 100.0 3.9E-33 1.3E-37 196.5 18.1 153 11-164 9-161 (223)
37 2hxs_A RAB-26, RAS-related pro 100.0 1.8E-33 6.2E-38 191.1 15.8 152 12-164 3-158 (178)
38 1gwn_A RHO-related GTP-binding 100.0 4.5E-33 1.5E-37 194.1 18.1 159 3-163 16-188 (205)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.6E-32 5.6E-37 186.2 20.4 152 11-164 3-159 (177)
40 3reg_A RHO-like small GTPase; 100.0 1.8E-32 6.1E-37 189.1 20.3 153 10-164 18-173 (194)
41 1x3s_A RAS-related protein RAB 100.0 1.7E-32 5.7E-37 188.8 19.1 157 6-164 6-163 (195)
42 1ky3_A GTP-binding protein YPT 100.0 3.7E-33 1.2E-37 190.0 15.6 154 11-164 4-163 (182)
43 3q85_A GTP-binding protein REM 100.0 9.1E-33 3.1E-37 186.2 17.4 149 15-164 2-152 (169)
44 3bc1_A RAS-related protein RAB 100.0 2.1E-32 7.1E-37 188.0 19.4 154 10-164 6-170 (195)
45 3ihw_A Centg3; RAS, centaurin, 100.0 2.1E-32 7.2E-37 187.6 18.9 149 9-164 14-165 (184)
46 3cph_A RAS-related protein SEC 100.0 2.2E-32 7.4E-37 190.9 19.3 153 10-164 15-167 (213)
47 3oes_A GTPase rhebl1; small GT 100.0 7E-33 2.4E-37 192.2 16.6 152 10-163 19-171 (201)
48 2atx_A Small GTP binding prote 100.0 1.8E-32 6.1E-37 189.0 18.5 153 10-164 13-178 (194)
49 1m7b_A RND3/RHOE small GTP-bin 100.0 3.2E-32 1.1E-36 186.4 18.4 151 11-163 3-167 (184)
50 2q3h_A RAS homolog gene family 100.0 4.3E-32 1.5E-36 188.0 18.8 153 10-164 15-180 (201)
51 2bov_A RAla, RAS-related prote 100.0 7.5E-32 2.6E-36 187.2 19.9 153 10-164 9-162 (206)
52 2nzj_A GTP-binding protein REM 100.0 5.2E-32 1.8E-36 183.3 18.6 150 13-164 2-154 (175)
53 3clv_A RAB5 protein, putative; 100.0 1E-31 3.5E-36 185.8 20.3 149 12-164 4-189 (208)
54 1vg8_A RAS-related protein RAB 100.0 3.6E-32 1.2E-36 189.0 17.9 152 11-164 4-160 (207)
55 1c1y_A RAS-related protein RAP 100.0 4.1E-32 1.4E-36 182.4 17.5 149 14-164 2-152 (167)
56 1u8z_A RAS-related protein RAL 100.0 7.1E-32 2.4E-36 181.2 18.5 149 14-164 3-152 (168)
57 2a9k_A RAS-related protein RAL 100.0 6.6E-32 2.3E-36 184.5 18.6 152 11-164 14-166 (187)
58 2yc2_C IFT27, small RAB-relate 100.0 5.8E-33 2E-37 192.9 13.1 152 13-164 18-177 (208)
59 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-31 4.1E-36 186.1 19.7 154 9-164 19-185 (201)
60 1kao_A RAP2A; GTP-binding prot 100.0 9.5E-32 3.3E-36 180.4 18.5 148 14-163 2-150 (167)
61 3l0i_B RAS-related protein RAB 100.0 3.2E-34 1.1E-38 198.7 6.4 155 9-164 27-181 (199)
62 3q72_A GTP-binding protein RAD 100.0 1E-31 3.5E-36 180.5 17.7 147 15-164 2-149 (166)
63 2iwr_A Centaurin gamma 1; ANK 100.0 1.4E-31 4.8E-36 182.0 18.4 145 13-164 5-154 (178)
64 2g3y_A GTP-binding protein GEM 100.0 1.1E-31 3.7E-36 187.8 18.1 153 10-164 32-188 (211)
65 3con_A GTPase NRAS; structural 100.0 3.9E-31 1.3E-35 181.6 20.2 153 9-164 15-168 (190)
66 2atv_A RERG, RAS-like estrogen 100.0 1.3E-31 4.6E-36 185.0 17.9 151 11-164 24-175 (196)
67 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.9E-31 9.8E-36 181.3 18.9 150 13-164 3-165 (186)
68 4dsu_A GTPase KRAS, isoform 2B 100.0 4.9E-31 1.7E-35 180.5 20.1 149 13-164 2-151 (189)
69 2j1l_A RHO-related GTP-binding 100.0 1.8E-31 6.1E-36 187.0 17.3 151 12-164 31-194 (214)
70 2j0v_A RAC-like GTP-binding pr 100.0 1.3E-31 4.4E-36 187.1 15.9 151 12-164 6-165 (212)
71 2erx_A GTP-binding protein DI- 100.0 4E-31 1.4E-35 178.2 17.6 149 14-164 2-152 (172)
72 4djt_A GTP-binding nuclear pro 100.0 7.5E-32 2.5E-36 189.1 13.8 153 11-164 7-160 (218)
73 3gj0_A GTP-binding nuclear pro 100.0 7.1E-32 2.4E-36 189.7 13.7 153 8-164 8-160 (221)
74 2fv8_A H6, RHO-related GTP-bin 100.0 7E-31 2.4E-35 183.0 18.4 151 12-164 22-185 (207)
75 2ce2_X GTPase HRAS; signaling 100.0 2.2E-30 7.4E-35 173.4 19.9 147 15-164 3-150 (166)
76 2gf0_A GTP-binding protein DI- 100.0 1.6E-30 5.4E-35 179.6 18.0 150 12-164 5-156 (199)
77 3bwd_D RAC-like GTP-binding pr 100.0 6.7E-32 2.3E-36 184.0 10.6 151 12-164 5-166 (182)
78 4gzl_A RAS-related C3 botulinu 100.0 8.8E-31 3E-35 182.2 16.3 152 11-164 26-190 (204)
79 3t1o_A Gliding protein MGLA; G 100.0 2.1E-31 7.2E-36 183.5 12.3 150 10-164 9-177 (198)
80 2cjw_A GTP-binding protein GEM 100.0 4.8E-30 1.6E-34 177.0 18.4 150 13-164 4-157 (192)
81 4bas_A ADP-ribosylation factor 100.0 4.5E-30 1.5E-34 177.3 16.2 155 6-164 8-174 (199)
82 2f9l_A RAB11B, member RAS onco 100.0 3.9E-29 1.3E-33 173.1 19.3 151 13-164 3-153 (199)
83 1oix_A RAS-related protein RAB 100.0 4.5E-29 1.5E-33 171.9 18.9 154 10-164 24-177 (191)
84 2h57_A ADP-ribosylation factor 100.0 1.3E-29 4.4E-34 174.2 16.0 149 9-164 15-172 (190)
85 1zd9_A ADP-ribosylation factor 100.0 2.7E-30 9.2E-35 177.4 11.9 150 8-164 15-170 (188)
86 2zej_A Dardarin, leucine-rich 100.0 1.2E-30 4E-35 178.7 8.9 148 15-164 2-162 (184)
87 1f6b_A SAR1; gtpases, N-termin 100.0 2.1E-29 7.2E-34 174.5 14.5 144 13-164 23-184 (198)
88 2h17_A ADP-ribosylation factor 100.0 1.5E-29 5.3E-34 172.6 13.1 148 9-164 15-168 (181)
89 1m2o_B GTP-binding protein SAR 100.0 8.6E-29 2.9E-33 170.4 16.3 144 13-164 21-177 (190)
90 1upt_A ARL1, ADP-ribosylation 100.0 2.9E-29 9.9E-34 169.2 13.4 145 12-164 4-154 (171)
91 2wkq_A NPH1-1, RAS-related C3 100.0 1.6E-28 5.6E-33 181.7 18.5 150 13-164 153-315 (332)
92 3llu_A RAS-related GTP-binding 100.0 8.9E-30 3E-34 176.0 10.6 156 5-162 10-181 (196)
93 1ksh_A ARF-like protein 2; sma 100.0 2E-28 6.7E-33 167.6 16.4 144 13-164 16-165 (186)
94 1r8s_A ADP-ribosylation factor 100.0 1.6E-29 5.4E-34 169.5 9.7 141 16-164 1-147 (164)
95 1zj6_A ADP-ribosylation factor 100.0 4.1E-29 1.4E-33 171.2 11.6 144 13-164 14-163 (187)
96 2b6h_A ADP-ribosylation factor 100.0 2.6E-29 8.8E-34 173.2 10.3 145 12-164 26-176 (192)
97 3th5_A RAS-related C3 botulinu 99.9 3.2E-31 1.1E-35 184.2 0.0 151 12-164 27-190 (204)
98 1fzq_A ADP-ribosylation factor 100.0 1.7E-28 5.7E-33 167.7 12.9 145 12-164 13-163 (181)
99 2fh5_B SR-beta, signal recogni 100.0 4.1E-28 1.4E-32 169.5 11.7 120 12-134 4-129 (214)
100 2x77_A ADP-ribosylation factor 100.0 8.8E-29 3E-33 169.8 8.0 144 13-164 20-169 (189)
101 1moz_A ARL1, ADP-ribosylation 100.0 1.9E-28 6.5E-33 167.1 9.4 144 13-164 16-165 (183)
102 3c5h_A Glucocorticoid receptor 100.0 3.2E-29 1.1E-33 180.0 5.1 153 9-164 13-240 (255)
103 3r7w_A Gtpase1, GTP-binding pr 100.0 2.6E-27 9E-32 174.2 14.3 147 14-163 2-166 (307)
104 2wji_A Ferrous iron transport 99.9 6.7E-27 2.3E-31 157.4 12.8 140 15-164 3-150 (165)
105 2qu8_A Putative nucleolar GTP- 99.9 2.9E-26 1E-30 161.8 14.7 149 12-164 26-190 (228)
106 3o47_A ADP-ribosylation factor 99.9 4.1E-27 1.4E-31 174.6 9.7 145 12-164 162-312 (329)
107 1nrj_B SR-beta, signal recogni 99.9 1E-27 3.4E-32 168.0 5.9 144 11-164 8-169 (218)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 1.1E-27 3.7E-32 175.9 6.2 141 17-163 1-159 (331)
109 2lkc_A Translation initiation 99.9 5.5E-26 1.9E-30 154.1 13.4 141 11-164 4-156 (178)
110 2wjg_A FEOB, ferrous iron tran 99.9 8.3E-26 2.8E-30 154.6 11.8 141 14-164 6-154 (188)
111 3lvq_E ARF-GAP with SH3 domain 99.9 8.6E-26 3E-30 175.7 11.8 145 12-164 319-469 (497)
112 3a1s_A Iron(II) transport prot 99.9 1.7E-25 5.9E-30 160.8 12.2 142 13-164 3-152 (258)
113 1svi_A GTP-binding protein YSX 99.9 4.1E-26 1.4E-30 157.0 8.5 146 11-164 19-180 (195)
114 2gj8_A MNME, tRNA modification 99.9 1E-25 3.4E-30 152.8 9.5 140 14-164 3-151 (172)
115 3dpu_A RAB family protein; roc 99.9 3.2E-26 1.1E-30 179.6 7.6 149 11-164 37-193 (535)
116 2cxx_A Probable GTP-binding pr 99.9 6.7E-26 2.3E-30 155.2 8.1 139 16-164 2-169 (190)
117 3iby_A Ferrous iron transport 99.9 2E-25 6.8E-30 160.2 9.6 139 16-164 2-152 (256)
118 2dyk_A GTP-binding protein; GT 99.9 7.8E-25 2.7E-29 146.0 11.9 137 16-164 2-147 (161)
119 3pqc_A Probable GTP-binding pr 99.9 4.6E-25 1.6E-29 151.5 10.0 146 9-164 17-179 (195)
120 3i8s_A Ferrous iron transport 99.9 7.6E-25 2.6E-29 158.7 10.4 140 15-164 3-154 (274)
121 3b1v_A Ferrous iron uptake tra 99.9 3.4E-25 1.2E-29 160.2 7.8 140 14-164 2-149 (272)
122 3iev_A GTP-binding protein ERA 99.9 3.8E-24 1.3E-28 157.4 13.2 151 9-164 4-167 (308)
123 3k53_A Ferrous iron transport 99.9 3.3E-24 1.1E-28 155.1 11.0 141 15-164 3-151 (271)
124 4dhe_A Probable GTP-binding pr 99.9 1.7E-23 5.6E-28 146.9 7.6 149 11-164 25-196 (223)
125 2hjg_A GTP-binding protein ENG 99.9 8.1E-23 2.8E-27 156.7 11.5 146 12-164 172-334 (436)
126 3gee_A MNME, tRNA modification 99.9 1.1E-22 3.8E-27 157.0 11.8 143 14-164 232-383 (476)
127 2ged_A SR-beta, signal recogni 99.9 8.3E-23 2.8E-27 140.3 9.1 114 12-134 45-170 (193)
128 2e87_A Hypothetical protein PH 99.9 8.6E-22 2.9E-26 147.5 14.7 146 13-164 165-321 (357)
129 3j2k_7 ERF3, eukaryotic polype 99.9 4.6E-22 1.6E-26 152.6 13.3 153 10-164 12-210 (439)
130 3qq5_A Small GTP-binding prote 99.9 2.2E-23 7.6E-28 158.6 5.9 144 11-164 30-181 (423)
131 1wf3_A GTP-binding protein; GT 99.9 5.6E-22 1.9E-26 145.3 13.0 142 13-163 5-157 (301)
132 4dcu_A GTP-binding protein ENG 99.9 2.8E-22 9.7E-27 154.5 11.1 147 11-164 191-354 (456)
133 1wb1_A Translation elongation 99.9 4.1E-22 1.4E-26 154.3 11.8 143 13-164 17-174 (482)
134 3p26_A Elongation factor 1 alp 99.9 5.1E-22 1.8E-26 154.0 10.5 147 13-164 31-223 (483)
135 1cip_A Protein (guanine nucleo 99.9 6.3E-22 2.1E-26 147.6 10.2 108 54-163 185-328 (353)
136 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-22 3.8E-27 151.1 6.0 141 16-164 159-315 (342)
137 1xzp_A Probable tRNA modificat 99.9 8.5E-22 2.9E-26 152.2 10.1 138 15-164 243-390 (482)
138 1s0u_A EIF-2-gamma, translatio 99.9 1.6E-20 5.4E-25 142.9 16.9 147 12-164 5-183 (408)
139 1jny_A EF-1-alpha, elongation 99.9 3.3E-22 1.1E-26 153.3 7.5 149 13-164 4-198 (435)
140 2qtf_A Protein HFLX, GTP-bindi 99.9 4.6E-21 1.6E-25 143.7 13.2 145 17-164 181-339 (364)
141 3sjy_A Translation initiation 99.9 1.5E-20 5.1E-25 142.9 16.0 151 11-164 4-177 (403)
142 3lxx_A GTPase IMAP family memb 99.9 2.4E-20 8.1E-25 132.4 16.0 147 11-162 25-192 (239)
143 2qag_A Septin-2, protein NEDD5 99.9 2.6E-22 8.8E-27 150.5 5.7 147 13-164 35-219 (361)
144 3cb4_D GTP-binding protein LEP 99.9 5.3E-21 1.8E-25 151.0 13.3 145 13-164 2-167 (599)
145 1zun_B Sulfate adenylate trans 99.9 6.9E-21 2.4E-25 145.9 13.1 148 12-164 21-209 (434)
146 1r5b_A Eukaryotic peptide chai 99.9 5.4E-22 1.9E-26 153.2 6.5 151 12-164 40-237 (467)
147 3lxw_A GTPase IMAP family memb 99.9 4.7E-21 1.6E-25 136.9 10.8 151 9-161 15-185 (247)
148 1kk1_A EIF2gamma; initiation o 99.9 8.6E-21 2.9E-25 144.5 12.8 150 9-164 4-185 (410)
149 3ohm_A Guanine nucleotide-bind 99.9 5.2E-21 1.8E-25 141.0 11.1 109 53-163 158-302 (327)
150 2xtz_A Guanine nucleotide-bind 99.9 2E-21 6.7E-26 144.9 9.0 72 62-133 181-263 (354)
151 3t5d_A Septin-7; GTP-binding p 99.8 1.4E-21 4.8E-26 141.5 7.5 149 12-164 5-189 (274)
152 2ywe_A GTP-binding protein LEP 99.8 1.4E-20 4.7E-25 148.5 13.2 146 12-164 3-169 (600)
153 3izq_1 HBS1P, elongation facto 99.8 3.5E-21 1.2E-25 152.7 9.7 150 12-164 164-357 (611)
154 1mky_A Probable GTP-binding pr 99.8 7.6E-21 2.6E-25 145.9 10.7 136 16-164 2-151 (439)
155 2c78_A Elongation factor TU-A; 99.8 2.4E-21 8.2E-26 147.3 7.6 149 11-163 7-178 (405)
156 1d2e_A Elongation factor TU (E 99.8 4.9E-21 1.7E-25 145.2 9.3 146 14-163 2-169 (397)
157 2xtp_A GTPase IMAP family memb 99.8 3.1E-20 1.1E-24 133.3 12.3 148 11-163 18-192 (260)
158 1f60_A Elongation factor EEF1A 99.8 1E-21 3.5E-26 151.4 4.6 147 13-164 5-197 (458)
159 1zcb_A G alpha I/13; GTP-bindi 99.8 1.3E-20 4.3E-25 141.0 10.1 108 55-164 194-338 (362)
160 3izy_P Translation initiation 99.8 4.2E-23 1.5E-27 160.9 -3.7 146 14-164 3-153 (537)
161 1ega_A Protein (GTP-binding pr 99.8 1E-19 3.6E-24 133.3 13.1 143 13-164 6-160 (301)
162 3geh_A MNME, tRNA modification 99.8 4.7E-21 1.6E-25 147.5 6.2 138 14-164 223-369 (462)
163 1zo1_I IF2, translation initia 99.8 5.4E-22 1.9E-26 153.5 -1.0 143 13-164 2-152 (501)
164 1mky_A Probable GTP-binding pr 99.8 2.4E-19 8.3E-24 137.6 13.4 145 13-164 178-340 (439)
165 3def_A T7I23.11 protein; chlor 99.8 4.5E-19 1.6E-23 127.5 13.9 118 13-133 34-164 (262)
166 2hjg_A GTP-binding protein ENG 99.8 5.7E-21 2E-25 146.5 3.6 139 15-164 3-150 (436)
167 4fid_A G protein alpha subunit 99.8 3E-19 1E-23 132.1 12.5 71 63-133 160-241 (340)
168 3mca_A HBS1, elongation factor 99.8 1.2E-20 4E-25 149.3 5.1 144 12-164 174-368 (592)
169 1azs_C GS-alpha; complex (lyas 99.8 1.7E-19 5.8E-24 136.1 10.8 77 55-133 210-297 (402)
170 3tr5_A RF-3, peptide chain rel 99.8 1.7E-19 6E-24 140.8 10.8 117 12-134 10-148 (528)
171 3avx_A Elongation factor TS, e 99.8 6.9E-20 2.4E-24 151.6 8.8 149 11-163 292-462 (1289)
172 1g7s_A Translation initiation 99.8 1.3E-19 4.6E-24 143.1 9.6 114 14-134 4-136 (594)
173 2elf_A Protein translation elo 99.8 1.4E-19 4.8E-24 136.0 7.1 130 17-162 23-160 (370)
174 4dcu_A GTP-binding protein ENG 99.8 5E-20 1.7E-24 142.0 4.2 141 13-164 21-170 (456)
175 2aka_B Dynamin-1; fusion prote 99.8 1.6E-19 5.3E-24 131.9 4.3 149 11-164 22-238 (299)
176 1h65_A Chloroplast outer envel 99.8 8.7E-18 3E-22 121.3 13.4 118 13-133 37-167 (270)
177 1pui_A ENGB, probable GTP-bind 99.8 8.3E-19 2.8E-23 121.8 7.6 144 12-164 23-184 (210)
178 3t34_A Dynamin-related protein 99.8 5.3E-19 1.8E-23 132.5 6.8 148 13-163 32-245 (360)
179 1wxq_A GTP-binding protein; st 99.7 8.2E-18 2.8E-22 127.3 10.2 85 16-100 1-114 (397)
180 2qnr_A Septin-2, protein NEDD5 99.7 1.1E-18 3.7E-23 127.9 4.0 147 12-163 15-199 (301)
181 2qag_C Septin-7; cell cycle, c 99.7 1.7E-17 5.8E-22 126.1 10.6 148 12-164 28-212 (418)
182 1u0l_A Probable GTPase ENGC; p 99.7 8.4E-19 2.9E-23 128.5 2.9 123 30-164 32-158 (301)
183 2h5e_A Peptide chain release f 99.7 1.9E-17 6.4E-22 129.5 10.6 142 13-163 11-179 (529)
184 1dar_A EF-G, elongation factor 99.7 2.5E-17 8.5E-22 132.4 11.5 122 8-135 5-144 (691)
185 1n0u_A EF-2, elongation factor 99.7 2.1E-17 7.2E-22 135.3 10.7 124 12-139 16-169 (842)
186 2dy1_A Elongation factor G; tr 99.7 2E-17 6.9E-22 132.5 10.4 116 12-133 6-139 (665)
187 2xex_A Elongation factor G; GT 99.7 4.2E-17 1.4E-21 131.2 11.8 118 11-134 6-141 (693)
188 1jwy_B Dynamin A GTPase domain 99.7 7.1E-18 2.4E-22 124.0 6.5 147 12-163 21-240 (315)
189 1udx_A The GTP-binding protein 99.7 5.5E-17 1.9E-21 123.2 9.9 144 16-164 158-310 (416)
190 2rdo_7 EF-G, elongation factor 99.7 2.8E-16 9.4E-21 126.6 13.6 122 11-136 6-150 (704)
191 1jal_A YCHF protein; nucleotid 99.7 1.9E-16 6.3E-21 118.2 11.3 146 16-162 3-240 (363)
192 2j69_A Bacterial dynamin-like 99.7 1.5E-16 5.2E-21 127.9 11.0 118 13-133 67-243 (695)
193 2qpt_A EH domain-containing pr 99.6 1.7E-16 5.6E-21 124.7 6.1 120 11-133 61-231 (550)
194 2x2e_A Dynamin-1; nitration, h 99.6 4.9E-17 1.7E-21 121.6 0.1 147 13-163 29-242 (353)
195 2dby_A GTP-binding protein; GD 99.6 6.8E-15 2.3E-19 110.2 10.2 145 16-162 2-245 (368)
196 2wsm_A Hydrogenase expression/ 99.6 1.9E-15 6.7E-20 105.6 4.1 139 14-164 29-199 (221)
197 3vqt_A RF-3, peptide chain rel 99.6 3.7E-14 1.3E-18 111.3 11.5 127 13-145 29-177 (548)
198 2hf9_A Probable hydrogenase ni 99.5 3.9E-17 1.3E-21 114.6 -6.2 139 14-164 37-209 (226)
199 3p32_A Probable GTPase RV1496/ 99.5 6E-15 2E-19 110.3 3.2 88 64-164 172-269 (355)
200 4a9a_A Ribosome-interacting GT 99.5 1.3E-13 4.4E-18 103.4 9.6 138 12-152 69-221 (376)
201 4fn5_A EF-G 1, elongation fact 99.5 3.8E-13 1.3E-17 108.6 11.7 130 12-145 10-162 (709)
202 2www_A Methylmalonic aciduria 99.4 2.1E-12 7.2E-17 96.3 10.6 88 64-164 167-264 (349)
203 2yv5_A YJEQ protein; hydrolase 99.4 7.4E-13 2.5E-17 97.0 7.5 87 74-164 66-154 (302)
204 3j25_A Tetracycline resistance 99.4 9.1E-14 3.1E-18 111.0 1.6 117 15-137 2-136 (638)
205 2ohf_A Protein OLA1, GTP-bindi 99.4 4.6E-13 1.6E-17 100.9 5.2 91 11-101 18-130 (396)
206 3zvr_A Dynamin-1; hydrolase, D 99.4 8.7E-13 3E-17 106.4 7.1 145 13-164 49-263 (772)
207 1yrb_A ATP(GTP)binding protein 99.4 2E-12 6.9E-17 92.4 7.9 67 64-133 109-184 (262)
208 2p67_A LAO/AO transport system 99.4 1.8E-13 6.3E-18 101.7 2.5 89 64-164 149-246 (341)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 3.1E-11 1E-15 91.1 11.6 88 12-99 17-127 (392)
210 2qm8_A GTPase/ATPase; G protei 99.2 1.6E-11 5.4E-16 91.2 4.4 89 64-164 148-246 (337)
211 3l82_B F-box only protein 4; T 99.1 1E-10 3.4E-15 80.6 5.0 89 72-164 110-208 (227)
212 2qag_B Septin-6, protein NEDD5 99.0 4.8E-10 1.7E-14 85.2 7.6 143 13-160 40-217 (427)
213 3sop_A Neuronal-specific septi 99.0 4.6E-10 1.6E-14 80.9 4.7 25 15-39 2-26 (270)
214 3l2o_B F-box only protein 4; s 98.9 6.2E-10 2.1E-14 80.1 4.6 91 71-164 194-293 (312)
215 3ec1_A YQEH GTPase; atnos1, at 98.9 1.5E-10 5.2E-15 86.9 0.4 133 16-159 163-311 (369)
216 3h2y_A GTPase family protein; 98.8 3.5E-10 1.2E-14 84.9 0.1 111 16-133 161-286 (368)
217 3h2y_A GTPase family protein; 98.8 9.2E-09 3.2E-13 77.2 6.5 84 73-164 55-145 (368)
218 2j37_W Signal recognition part 98.6 6.8E-08 2.3E-12 75.1 7.4 130 13-155 99-270 (504)
219 3ec1_A YQEH GTPase; atnos1, at 98.6 1.9E-08 6.3E-13 75.6 3.3 84 73-164 57-147 (369)
220 1puj_A YLQF, conserved hypothe 98.6 6.8E-08 2.3E-12 69.9 5.5 58 13-75 118-176 (282)
221 3cnl_A YLQF, putative uncharac 98.6 1.9E-08 6.5E-13 72.1 2.4 56 16-75 100-155 (262)
222 1puj_A YLQF, conserved hypothe 98.4 3E-07 1E-11 66.6 5.5 86 68-164 3-91 (282)
223 1tq4_A IIGP1, interferon-induc 98.3 1.5E-06 5.2E-11 66.0 6.9 109 15-132 69-187 (413)
224 1f5n_A Interferon-induced guan 98.3 7.6E-07 2.6E-11 70.4 4.6 64 12-75 35-102 (592)
225 3szr_A Interferon-induced GTP- 98.2 2.6E-06 9E-11 67.8 7.6 26 16-41 46-71 (608)
226 2v3c_C SRP54, signal recogniti 98.2 4.3E-06 1.5E-10 63.9 8.4 84 64-159 181-272 (432)
227 3dm5_A SRP54, signal recogniti 98.2 2E-05 7E-10 60.2 10.6 86 64-160 183-274 (443)
228 3kl4_A SRP54, signal recogniti 98.1 5.6E-06 1.9E-10 63.2 6.3 86 64-160 180-273 (433)
229 1bif_A 6-phosphofructo-2-kinas 98.1 1.6E-07 5.4E-12 72.6 -2.4 102 13-116 37-148 (469)
230 1t9h_A YLOQ, probable GTPase E 98.1 6.5E-06 2.2E-10 60.2 6.1 82 79-163 78-161 (307)
231 1j8m_F SRP54, signal recogniti 98.0 4.3E-05 1.5E-09 55.6 8.8 85 64-160 181-274 (297)
232 3cnl_A YLQF, putative uncharac 97.9 6.1E-06 2.1E-10 59.0 3.1 82 71-164 4-86 (262)
233 1ye8_A Protein THEP1, hypothet 97.8 1.6E-05 5.6E-10 53.5 3.2 23 16-38 1-23 (178)
234 3q5d_A Atlastin-1; G protein, 97.7 3.4E-05 1.1E-09 59.2 5.1 26 12-37 64-89 (447)
235 2rcn_A Probable GTPase ENGC; Y 97.7 8E-05 2.7E-09 55.5 6.0 77 84-164 127-204 (358)
236 1kgd_A CASK, peripheral plasma 97.6 2.9E-05 9.8E-10 52.2 3.0 22 17-38 7-28 (180)
237 1lvg_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 52.6 3.0 21 17-37 6-26 (198)
238 3ney_A 55 kDa erythrocyte memb 97.6 4.7E-05 1.6E-09 52.1 3.4 25 14-38 18-42 (197)
239 3tr0_A Guanylate kinase, GMP k 97.6 4.3E-05 1.5E-09 52.1 3.0 22 17-38 9-30 (205)
240 3a00_A Guanylate kinase, GMP k 97.6 4.3E-05 1.5E-09 51.6 2.9 21 18-38 4-24 (186)
241 1zp6_A Hypothetical protein AT 97.5 4.4E-05 1.5E-09 51.5 3.0 23 16-38 10-32 (191)
242 1znw_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 52.2 3.0 22 17-38 22-43 (207)
243 1knq_A Gluconate kinase; ALFA/ 97.5 8E-05 2.7E-09 49.5 3.9 23 15-37 8-30 (175)
244 1s96_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 52.5 3.0 24 16-39 17-40 (219)
245 1z6g_A Guanylate kinase; struc 97.5 6.2E-05 2.1E-09 52.2 3.0 22 17-38 25-46 (218)
246 3c8u_A Fructokinase; YP_612366 97.5 7.5E-05 2.6E-09 51.3 3.4 25 13-37 20-44 (208)
247 2wwf_A Thymidilate kinase, put 97.5 8.7E-05 3E-09 50.8 3.7 30 8-37 3-32 (212)
248 4gp7_A Metallophosphoesterase; 97.5 6.2E-05 2.1E-09 50.2 2.8 20 17-36 11-30 (171)
249 3tif_A Uncharacterized ABC tra 97.4 7.8E-05 2.7E-09 52.4 2.9 23 17-39 33-55 (235)
250 3tau_A Guanylate kinase, GMP k 97.4 8.3E-05 2.8E-09 51.1 3.0 23 17-39 10-32 (208)
251 1kag_A SKI, shikimate kinase I 97.4 9E-05 3.1E-09 49.1 3.0 23 16-38 5-27 (173)
252 1htw_A HI0065; nucleotide-bind 97.4 9.1E-05 3.1E-09 48.9 3.0 23 17-39 35-57 (158)
253 1ukz_A Uridylate kinase; trans 97.4 0.00017 5.7E-09 49.1 4.2 26 12-37 12-37 (203)
254 1ex7_A Guanylate kinase; subst 97.4 0.0001 3.4E-09 50.0 3.0 21 18-38 4-24 (186)
255 2pcj_A ABC transporter, lipopr 97.4 9.2E-05 3.1E-09 51.6 2.8 23 17-39 32-54 (224)
256 2j41_A Guanylate kinase; GMP, 97.4 0.0001 3.5E-09 50.2 3.0 24 16-39 7-30 (207)
257 1uf9_A TT1252 protein; P-loop, 97.4 0.00013 4.4E-09 49.5 3.4 29 10-38 3-31 (203)
258 2qor_A Guanylate kinase; phosp 97.4 0.00011 3.7E-09 50.3 3.0 23 16-38 13-35 (204)
259 3sr0_A Adenylate kinase; phosp 97.4 0.00011 3.9E-09 50.5 3.1 22 16-37 1-22 (206)
260 2bdt_A BH3686; alpha-beta prot 97.4 0.00011 3.7E-09 49.5 3.0 21 17-37 4-24 (189)
261 3lw7_A Adenylate kinase relate 97.4 0.00012 4.1E-09 48.3 3.1 20 16-35 2-21 (179)
262 2onk_A Molybdate/tungstate ABC 97.3 0.00012 4E-09 51.7 3.1 23 17-39 26-48 (240)
263 4eun_A Thermoresistant glucoki 97.3 0.00012 4E-09 50.0 3.0 23 15-37 29-51 (200)
264 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.5E-09 50.0 3.3 24 14-37 5-28 (211)
265 3fb4_A Adenylate kinase; psych 97.3 0.00012 4.2E-09 50.3 3.1 22 16-37 1-22 (216)
266 3kb2_A SPBC2 prophage-derived 97.3 0.00012 4.1E-09 48.3 2.9 21 17-37 3-23 (173)
267 1ly1_A Polynucleotide kinase; 97.3 0.00013 4.3E-09 48.6 3.0 22 16-37 3-24 (181)
268 1b0u_A Histidine permease; ABC 97.3 0.00012 4.1E-09 52.3 3.0 23 17-39 34-56 (262)
269 1sgw_A Putative ABC transporte 97.3 0.00013 4.3E-09 50.6 3.0 23 17-39 37-59 (214)
270 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4.2E-09 52.6 3.0 23 17-39 36-58 (275)
271 3dl0_A Adenylate kinase; phosp 97.3 0.00013 4.6E-09 50.1 3.1 22 16-37 1-22 (216)
272 2bbw_A Adenylate kinase 4, AK4 97.3 0.00015 5E-09 51.1 3.3 21 16-36 28-48 (246)
273 1g6h_A High-affinity branched- 97.3 0.00013 4.5E-09 51.9 2.9 23 17-39 35-57 (257)
274 2cbz_A Multidrug resistance-as 97.3 0.00015 5E-09 51.0 3.1 22 17-38 33-54 (237)
275 4g1u_C Hemin import ATP-bindin 97.3 0.00013 4.6E-09 52.2 2.9 23 17-39 39-61 (266)
276 3umf_A Adenylate kinase; rossm 97.3 0.00024 8.2E-09 49.3 4.1 24 14-37 27-51 (217)
277 1mv5_A LMRA, multidrug resista 97.3 0.00016 5.4E-09 51.0 3.2 23 17-39 30-52 (243)
278 2i3b_A HCR-ntpase, human cance 97.3 0.00015 5.2E-09 49.2 3.0 21 17-37 3-23 (189)
279 2olj_A Amino acid ABC transpor 97.3 0.00015 5E-09 51.9 3.0 23 17-39 52-74 (263)
280 2pze_A Cystic fibrosis transme 97.3 0.00015 5.1E-09 50.7 3.0 23 17-39 36-58 (229)
281 2ff7_A Alpha-hemolysin translo 97.3 0.00016 5.5E-09 51.2 3.1 23 17-39 37-59 (247)
282 2if2_A Dephospho-COA kinase; a 97.3 0.00016 5.4E-09 49.3 3.0 22 16-37 2-23 (204)
283 1ji0_A ABC transporter; ATP bi 97.3 0.00015 5.2E-09 51.1 2.9 23 17-39 34-56 (240)
284 3vaa_A Shikimate kinase, SK; s 97.3 0.00018 6.1E-09 49.0 3.2 22 16-37 26-47 (199)
285 1vpl_A ABC transporter, ATP-bi 97.3 0.00016 5.4E-09 51.5 3.0 23 17-39 43-65 (256)
286 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00017 5.7E-09 51.1 3.1 22 17-38 31-52 (250)
287 3ec2_A DNA replication protein 97.3 0.00014 4.6E-09 48.7 2.5 23 16-38 39-61 (180)
288 3b85_A Phosphate starvation-in 97.2 0.00013 4.4E-09 50.3 2.4 22 17-38 24-45 (208)
289 2qi9_C Vitamin B12 import ATP- 97.2 0.00016 5.6E-09 51.2 3.0 23 17-39 28-50 (249)
290 3t61_A Gluconokinase; PSI-biol 97.2 0.00017 5.9E-09 49.1 3.0 22 16-37 19-40 (202)
291 1qhx_A CPT, protein (chloramph 97.2 0.00018 6.3E-09 47.8 3.0 22 17-38 5-26 (178)
292 2zu0_C Probable ATP-dependent 97.2 0.00018 6.2E-09 51.5 3.1 22 17-38 48-69 (267)
293 2qt1_A Nicotinamide riboside k 97.2 0.00031 1.1E-08 48.0 4.2 27 12-38 18-44 (207)
294 3uie_A Adenylyl-sulfate kinase 97.2 0.00018 6.1E-09 49.0 3.0 24 14-37 24-47 (200)
295 1jjv_A Dephospho-COA kinase; P 97.2 0.00023 7.9E-09 48.6 3.5 22 16-37 3-24 (206)
296 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 6.9E-09 49.5 3.2 22 16-37 6-27 (227)
297 2rcn_A Probable GTPase ENGC; Y 97.2 0.00018 6.2E-09 53.6 3.1 24 17-40 217-240 (358)
298 1y63_A LMAJ004144AAA protein; 97.2 0.00024 8.1E-09 47.8 3.4 24 15-38 10-33 (184)
299 2ihy_A ABC transporter, ATP-bi 97.2 0.0002 6.8E-09 51.6 3.2 23 17-39 49-71 (279)
300 2ixe_A Antigen peptide transpo 97.2 0.00018 6.1E-09 51.6 2.9 23 17-39 47-69 (271)
301 2ghi_A Transport protein; mult 97.2 0.0002 6.8E-09 51.1 3.1 22 17-38 48-69 (260)
302 3co5_A Putative two-component 97.2 0.0006 2.1E-08 43.9 5.2 23 16-38 28-50 (143)
303 2v9p_A Replication protein E1; 97.2 0.0002 6.8E-09 52.3 3.1 21 17-37 128-148 (305)
304 2eyu_A Twitching motility prot 97.2 0.0002 6.9E-09 51.1 3.0 21 17-37 27-47 (261)
305 1ak2_A Adenylate kinase isoenz 97.2 0.00024 8.1E-09 49.6 3.3 25 13-37 14-38 (233)
306 2nq2_C Hypothetical ABC transp 97.2 0.0002 6.8E-09 50.9 2.9 23 17-39 33-55 (253)
307 2jaq_A Deoxyguanosine kinase; 97.2 0.00023 7.9E-09 48.2 3.2 21 17-37 2-22 (205)
308 2yz2_A Putative ABC transporte 97.2 0.0002 6.9E-09 51.2 2.9 23 17-39 35-57 (266)
309 2cdn_A Adenylate kinase; phosp 97.2 0.00029 9.8E-09 47.9 3.6 26 12-37 17-42 (201)
310 2ehv_A Hypothetical protein PH 97.2 0.00022 7.7E-09 49.9 3.1 20 17-36 32-51 (251)
311 1nks_A Adenylate kinase; therm 97.2 0.00026 8.8E-09 47.5 3.3 21 17-37 3-23 (194)
312 4a74_A DNA repair and recombin 97.2 0.0002 6.9E-09 49.5 2.8 22 17-38 27-48 (231)
313 3lnc_A Guanylate kinase, GMP k 97.2 0.00013 4.5E-09 50.8 1.8 22 17-38 29-51 (231)
314 3tlx_A Adenylate kinase 2; str 97.2 0.00031 1.1E-08 49.5 3.7 24 14-37 28-51 (243)
315 3cm0_A Adenylate kinase; ATP-b 97.2 0.00032 1.1E-08 46.9 3.7 23 15-37 4-26 (186)
316 1e4v_A Adenylate kinase; trans 97.2 0.00023 7.7E-09 49.0 2.9 22 16-37 1-22 (214)
317 3aez_A Pantothenate kinase; tr 97.2 0.00032 1.1E-08 51.4 3.8 26 12-37 87-112 (312)
318 3trf_A Shikimate kinase, SK; a 97.2 0.00027 9.3E-09 47.3 3.2 22 16-37 6-27 (185)
319 2pjz_A Hypothetical protein ST 97.1 0.00026 8.9E-09 50.6 3.2 23 17-39 32-54 (263)
320 1via_A Shikimate kinase; struc 97.1 0.00025 8.6E-09 47.1 3.0 21 17-37 6-26 (175)
321 2rhm_A Putative kinase; P-loop 97.1 0.00035 1.2E-08 47.0 3.7 23 15-37 5-27 (193)
322 2x8a_A Nuclear valosin-contain 97.1 0.00024 8.2E-09 51.0 3.0 21 18-38 47-67 (274)
323 1np6_A Molybdopterin-guanine d 97.1 0.00027 9.3E-09 47.3 3.0 24 15-38 6-29 (174)
324 1lw7_A Transcriptional regulat 97.1 0.00022 7.6E-09 53.2 2.9 24 15-38 170-193 (365)
325 1aky_A Adenylate kinase; ATP:A 97.1 0.00028 9.7E-09 48.7 3.2 23 15-37 4-26 (220)
326 1u0l_A Probable GTPase ENGC; p 97.1 0.00031 1E-08 51.1 3.4 25 17-41 171-195 (301)
327 1kht_A Adenylate kinase; phosp 97.1 0.0003 1E-08 47.2 3.2 22 16-37 4-25 (192)
328 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00025 8.6E-09 52.9 2.9 23 17-39 32-54 (359)
329 2jeo_A Uridine-cytidine kinase 97.1 0.00035 1.2E-08 49.1 3.5 24 14-37 24-47 (245)
330 2chg_A Replication factor C sm 97.1 0.00094 3.2E-08 45.4 5.6 22 17-38 40-61 (226)
331 2pt5_A Shikimate kinase, SK; a 97.1 0.00036 1.2E-08 45.9 3.2 21 17-37 2-22 (168)
332 3tqc_A Pantothenate kinase; bi 97.1 0.00047 1.6E-08 50.7 4.0 26 12-37 89-114 (321)
333 1z47_A CYSA, putative ABC-tran 97.1 0.00031 1.1E-08 52.3 3.1 23 17-39 43-65 (355)
334 1gvn_B Zeta; postsegregational 97.1 0.00042 1.4E-08 50.1 3.7 24 14-37 32-55 (287)
335 2vp4_A Deoxynucleoside kinase; 97.1 0.00038 1.3E-08 48.5 3.4 26 13-38 18-43 (230)
336 1tev_A UMP-CMP kinase; ploop, 97.1 0.00041 1.4E-08 46.6 3.4 22 16-37 4-25 (196)
337 1ixz_A ATP-dependent metallopr 97.1 0.00033 1.1E-08 49.4 3.0 21 18-38 52-72 (254)
338 3iij_A Coilin-interacting nucl 97.1 0.00043 1.5E-08 46.2 3.4 23 15-37 11-33 (180)
339 2yyz_A Sugar ABC transporter, 97.1 0.00033 1.1E-08 52.3 3.1 23 17-39 31-53 (359)
340 3rlf_A Maltose/maltodextrin im 97.1 0.00034 1.2E-08 52.6 3.1 23 17-39 31-53 (381)
341 2it1_A 362AA long hypothetical 97.0 0.00034 1.2E-08 52.2 3.1 23 17-39 31-53 (362)
342 3be4_A Adenylate kinase; malar 97.0 0.00037 1.3E-08 48.1 3.1 23 15-37 5-27 (217)
343 2bbs_A Cystic fibrosis transme 97.0 0.00033 1.1E-08 50.7 3.0 22 17-38 66-87 (290)
344 2plr_A DTMP kinase, probable t 97.0 0.00044 1.5E-08 47.1 3.5 22 16-37 5-26 (213)
345 2ze6_A Isopentenyl transferase 97.0 0.00036 1.2E-08 49.4 3.0 21 17-37 3-23 (253)
346 1odf_A YGR205W, hypothetical 3 97.0 0.00057 1.9E-08 49.5 4.1 26 12-37 28-53 (290)
347 2f1r_A Molybdopterin-guanine d 97.0 0.00018 6E-09 48.1 1.3 21 17-37 4-24 (171)
348 3nh6_A ATP-binding cassette SU 97.0 0.00024 8.2E-09 51.9 2.1 22 17-38 82-103 (306)
349 2yvu_A Probable adenylyl-sulfa 97.0 0.00063 2.2E-08 45.6 4.0 25 13-37 11-35 (186)
350 1v43_A Sugar-binding transport 97.0 0.00038 1.3E-08 52.2 3.1 23 17-39 39-61 (372)
351 3tui_C Methionine import ATP-b 97.0 0.00038 1.3E-08 52.0 3.1 23 17-39 56-78 (366)
352 2kjq_A DNAA-related protein; s 97.0 0.00027 9.3E-09 46.0 2.1 22 17-38 38-59 (149)
353 2yv5_A YJEQ protein; hydrolase 97.0 0.00037 1.3E-08 50.7 3.1 22 17-39 167-188 (302)
354 1sq5_A Pantothenate kinase; P- 97.0 0.00049 1.7E-08 50.2 3.7 25 13-37 78-102 (308)
355 1g29_1 MALK, maltose transport 97.0 0.00037 1.3E-08 52.3 3.1 23 17-39 31-53 (372)
356 1t9h_A YLOQ, probable GTPase E 97.0 0.00011 3.9E-09 53.6 0.3 23 17-39 175-197 (307)
357 1rz3_A Hypothetical protein rb 97.0 0.00054 1.8E-08 46.7 3.6 25 13-37 20-44 (201)
358 1uj2_A Uridine-cytidine kinase 97.0 0.00048 1.6E-08 48.7 3.4 27 11-37 18-44 (252)
359 2p5t_B PEZT; postsegregational 97.0 0.00043 1.5E-08 49.0 3.2 26 12-37 29-54 (253)
360 2xb4_A Adenylate kinase; ATP-b 97.0 0.00043 1.5E-08 48.0 3.2 21 17-37 2-22 (223)
361 1zd8_A GTP:AMP phosphotransfer 97.0 0.00045 1.5E-08 48.0 3.1 22 16-37 8-29 (227)
362 1jbk_A CLPB protein; beta barr 97.0 0.00047 1.6E-08 45.8 3.0 23 16-38 44-66 (195)
363 1zak_A Adenylate kinase; ATP:A 97.0 0.00039 1.3E-08 48.0 2.7 22 16-37 6-27 (222)
364 2f6r_A COA synthase, bifunctio 97.0 0.00085 2.9E-08 48.3 4.5 26 12-37 72-97 (281)
365 1qf9_A UMP/CMP kinase, protein 97.0 0.00068 2.3E-08 45.4 3.8 22 16-37 7-28 (194)
366 3jvv_A Twitching mobility prot 97.0 0.00043 1.5E-08 51.6 3.0 21 17-37 125-145 (356)
367 3d31_A Sulfate/molybdate ABC t 96.9 0.00031 1.1E-08 52.2 2.1 23 17-39 28-50 (348)
368 1rj9_A FTSY, signal recognitio 96.9 0.00047 1.6E-08 50.3 3.0 23 15-37 102-124 (304)
369 2c95_A Adenylate kinase 1; tra 96.9 0.00052 1.8E-08 46.2 3.0 22 16-37 10-31 (196)
370 1iy2_A ATP-dependent metallopr 96.9 0.0005 1.7E-08 49.2 3.0 21 18-38 76-96 (278)
371 2v54_A DTMP kinase, thymidylat 96.9 0.0006 2E-08 46.3 3.3 23 16-38 5-27 (204)
372 4e22_A Cytidylate kinase; P-lo 96.9 0.00058 2E-08 48.3 3.3 22 15-36 27-48 (252)
373 2iyv_A Shikimate kinase, SK; t 96.9 0.0005 1.7E-08 46.0 2.8 21 17-37 4-24 (184)
374 1in4_A RUVB, holliday junction 96.9 0.0005 1.7E-08 50.7 3.0 22 17-38 53-74 (334)
375 2pbr_A DTMP kinase, thymidylat 96.9 0.00059 2E-08 45.8 3.1 21 17-37 2-22 (195)
376 3gd7_A Fusion complex of cysti 96.9 0.0005 1.7E-08 51.9 2.9 22 17-38 49-70 (390)
377 2bwj_A Adenylate kinase 5; pho 96.9 0.00058 2E-08 46.1 3.0 22 16-37 13-34 (199)
378 1xjc_A MOBB protein homolog; s 96.9 0.00067 2.3E-08 45.2 3.2 23 15-37 4-26 (169)
379 1e6c_A Shikimate kinase; phosp 96.9 0.00062 2.1E-08 44.9 3.0 21 17-37 4-24 (173)
380 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00051 1.7E-08 50.7 2.8 23 17-39 173-195 (330)
381 3b9q_A Chloroplast SRP recepto 96.9 0.00058 2E-08 49.7 3.0 24 14-37 99-122 (302)
382 2z0h_A DTMP kinase, thymidylat 96.9 0.00061 2.1E-08 45.9 3.0 22 17-38 2-23 (197)
383 2gza_A Type IV secretion syste 96.9 0.00053 1.8E-08 51.2 2.8 24 16-39 176-199 (361)
384 1lv7_A FTSH; alpha/beta domain 96.9 0.00061 2.1E-08 48.1 3.0 22 16-37 46-67 (257)
385 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00063 2.2E-08 46.9 3.0 21 17-37 25-45 (235)
386 1gtv_A TMK, thymidylate kinase 96.9 0.00023 7.8E-09 48.7 0.7 21 17-37 2-22 (214)
387 1oxx_K GLCV, glucose, ABC tran 96.8 0.00031 1E-08 52.3 1.3 23 17-39 33-55 (353)
388 1nn5_A Similar to deoxythymidy 96.8 0.00071 2.4E-08 46.2 3.1 23 15-37 9-31 (215)
389 3e70_C DPA, signal recognition 96.8 0.00067 2.3E-08 50.0 3.0 136 13-159 127-302 (328)
390 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00085 2.9E-08 47.7 3.5 22 16-37 5-26 (260)
391 2ewv_A Twitching motility prot 96.8 0.0007 2.4E-08 50.8 3.1 22 16-37 137-158 (372)
392 2pez_A Bifunctional 3'-phospho 96.8 0.00094 3.2E-08 44.5 3.5 23 15-37 5-27 (179)
393 1zuh_A Shikimate kinase; alpha 96.8 0.00087 3E-08 44.1 3.3 23 15-37 7-29 (168)
394 1vht_A Dephospho-COA kinase; s 96.8 0.00097 3.3E-08 45.9 3.6 23 15-37 4-26 (218)
395 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00061 2.1E-08 52.5 2.7 24 16-39 139-162 (460)
396 3kta_A Chromosome segregation 96.8 0.00076 2.6E-08 45.0 2.9 21 17-37 28-48 (182)
397 2vli_A Antibiotic resistance p 96.8 0.00056 1.9E-08 45.6 2.2 22 16-37 6-27 (183)
398 3bos_A Putative DNA replicatio 96.8 0.00086 3E-08 46.4 3.2 23 15-37 52-74 (242)
399 2p65_A Hypothetical protein PF 96.8 0.00063 2.2E-08 45.1 2.3 23 15-37 43-65 (187)
400 3r20_A Cytidylate kinase; stru 96.8 0.0009 3.1E-08 46.9 3.2 24 14-37 8-31 (233)
401 1p9r_A General secretion pathw 96.8 0.00078 2.7E-08 51.3 3.0 22 17-38 169-190 (418)
402 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0038 1.3E-07 47.9 6.6 64 12-75 64-151 (457)
403 3n70_A Transport activator; si 96.7 0.00098 3.4E-08 43.0 3.0 25 15-39 24-48 (145)
404 2w58_A DNAI, primosome compone 96.7 0.001 3.5E-08 45.1 3.2 23 16-38 55-77 (202)
405 3nwj_A ATSK2; P loop, shikimat 96.7 0.00088 3E-08 47.5 2.9 22 16-37 49-70 (250)
406 1cr0_A DNA primase/helicase; R 96.7 0.00082 2.8E-08 48.5 2.8 22 17-38 37-58 (296)
407 2cvh_A DNA repair and recombin 96.7 0.00096 3.3E-08 45.7 3.0 21 17-37 22-42 (220)
408 2oap_1 GSPE-2, type II secreti 96.7 0.00087 3E-08 52.3 3.0 23 17-39 262-284 (511)
409 2grj_A Dephospho-COA kinase; T 96.7 0.0013 4.6E-08 44.6 3.6 27 12-38 9-35 (192)
410 1tue_A Replication protein E1; 96.7 0.00077 2.6E-08 46.3 2.3 21 17-37 60-80 (212)
411 2obl_A ESCN; ATPase, hydrolase 96.7 0.00096 3.3E-08 49.5 3.1 23 17-39 73-95 (347)
412 2og2_A Putative signal recogni 96.7 0.00099 3.4E-08 49.7 3.0 24 14-37 156-179 (359)
413 1n0w_A DNA repair protein RAD5 96.7 0.0011 3.6E-08 46.2 3.0 22 17-38 26-47 (243)
414 3b9p_A CG5977-PA, isoform A; A 96.7 0.001 3.4E-08 48.0 2.9 24 15-38 54-77 (297)
415 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0011 3.8E-08 46.7 3.0 23 15-37 39-61 (262)
416 1m7g_A Adenylylsulfate kinase; 96.6 0.0011 3.9E-08 45.4 3.0 23 15-37 25-47 (211)
417 2yhs_A FTSY, cell division pro 96.6 0.0011 3.7E-08 51.5 3.0 24 14-37 292-315 (503)
418 1ltq_A Polynucleotide kinase; 96.6 0.0011 3.9E-08 47.8 3.0 22 16-37 3-24 (301)
419 4eaq_A DTMP kinase, thymidylat 96.6 0.0018 6E-08 45.2 3.9 25 14-38 25-49 (229)
420 3h4m_A Proteasome-activating n 96.6 0.0011 3.9E-08 47.3 2.9 23 16-38 52-74 (285)
421 3cf0_A Transitional endoplasmi 96.6 0.0012 3.9E-08 48.0 2.9 23 16-38 50-72 (301)
422 1nij_A Hypothetical protein YJ 96.6 0.00086 2.9E-08 49.1 2.2 25 15-39 4-28 (318)
423 3t15_A Ribulose bisphosphate c 96.6 0.0015 5E-08 47.3 3.4 24 15-38 36-59 (293)
424 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0013 4.6E-08 51.6 3.4 23 17-39 49-71 (538)
425 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0015 5.3E-08 42.4 3.1 19 18-36 26-44 (149)
426 3syl_A Protein CBBX; photosynt 96.6 0.0016 5.6E-08 47.0 3.5 25 13-37 65-89 (309)
427 2dpy_A FLII, flagellum-specifi 96.6 0.0013 4.5E-08 50.4 3.1 23 17-39 159-181 (438)
428 4b4t_K 26S protease regulatory 96.6 0.0013 4.5E-08 50.1 3.0 22 16-37 207-228 (428)
429 1njg_A DNA polymerase III subu 96.6 0.0014 4.7E-08 45.1 3.0 21 17-37 47-67 (250)
430 1svm_A Large T antigen; AAA+ f 96.6 0.0013 4.5E-08 49.4 3.0 22 16-37 170-191 (377)
431 4b4t_M 26S protease regulatory 96.6 0.0013 4.5E-08 50.2 3.0 24 14-37 214-237 (434)
432 3euj_A Chromosome partition pr 96.5 0.0014 4.7E-08 50.8 3.0 21 17-37 31-51 (483)
433 1d2n_A N-ethylmaleimide-sensit 96.5 0.0022 7.7E-08 45.6 4.0 26 13-38 62-87 (272)
434 1c9k_A COBU, adenosylcobinamid 96.5 0.0017 5.7E-08 43.7 3.0 21 18-38 2-22 (180)
435 3ozx_A RNAse L inhibitor; ATP 96.5 0.0014 4.7E-08 51.6 3.0 23 17-39 27-49 (538)
436 3gmt_A Adenylate kinase; ssgci 96.5 0.0017 5.9E-08 45.4 3.2 25 13-37 6-30 (230)
437 4fcw_A Chaperone protein CLPB; 96.5 0.0023 7.9E-08 46.2 4.0 24 15-38 47-70 (311)
438 4b4t_L 26S protease subunit RP 96.5 0.0015 5.2E-08 49.9 3.0 23 15-37 215-237 (437)
439 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.3E-08 45.1 3.3 27 11-37 12-38 (236)
440 3b60_A Lipid A export ATP-bind 96.5 0.0015 5.3E-08 51.7 3.0 23 17-39 371-393 (582)
441 1nlf_A Regulatory protein REPA 96.5 0.0016 5.4E-08 46.7 2.8 21 17-37 32-52 (279)
442 3j16_B RLI1P; ribosome recycli 96.5 0.0017 5.7E-08 51.8 3.1 23 17-39 105-127 (608)
443 1l8q_A Chromosomal replication 96.5 0.0016 5.6E-08 47.5 2.9 22 16-37 38-59 (324)
444 3b5x_A Lipid A export ATP-bind 96.4 0.0018 6.1E-08 51.4 3.2 23 17-39 371-393 (582)
445 3zvl_A Bifunctional polynucleo 96.4 0.0029 9.8E-08 48.1 4.2 25 14-38 257-281 (416)
446 3u61_B DNA polymerase accessor 96.4 0.013 4.3E-07 42.7 7.5 21 18-38 51-71 (324)
447 4b4t_J 26S protease regulatory 96.4 0.0018 6.1E-08 49.0 3.0 23 15-37 182-204 (405)
448 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.5E-08 43.5 3.2 21 17-37 4-24 (208)
449 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0018 6.2E-08 47.5 2.9 23 16-38 46-68 (322)
450 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0027 9.4E-08 47.2 3.8 24 14-37 23-46 (359)
451 1ofh_A ATP-dependent HSL prote 96.4 0.002 6.8E-08 46.4 3.0 23 15-37 50-72 (310)
452 1p5z_B DCK, deoxycytidine kina 96.4 0.0015 5.2E-08 46.3 2.2 26 13-38 22-47 (263)
453 2qmh_A HPR kinase/phosphorylas 96.4 0.0023 8E-08 43.7 3.0 24 16-39 35-58 (205)
454 3eie_A Vacuolar protein sortin 96.3 0.0031 1.1E-07 46.1 3.9 24 15-38 51-74 (322)
455 2yl4_A ATP-binding cassette SU 96.3 0.0016 5.4E-08 51.8 2.4 23 17-39 372-394 (595)
456 3bk7_A ABC transporter ATP-bin 96.3 0.0022 7.5E-08 51.1 3.2 23 17-39 119-141 (607)
457 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0023 7.9E-08 47.8 3.1 19 18-36 26-44 (365)
458 2qby_A CDC6 homolog 1, cell di 96.3 0.0021 7.3E-08 47.5 2.9 23 15-37 45-67 (386)
459 3ozx_A RNAse L inhibitor; ATP 96.3 0.0029 9.9E-08 49.7 3.6 24 17-40 296-319 (538)
460 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0033 1.1E-07 49.4 4.0 24 17-40 314-337 (538)
461 1sxj_E Activator 1 40 kDa subu 96.3 0.0019 6.5E-08 47.6 2.5 20 18-37 39-58 (354)
462 3qf4_B Uncharacterized ABC tra 96.3 0.0019 6.4E-08 51.4 2.5 23 17-39 383-405 (598)
463 2dr3_A UPF0273 protein PH0284; 96.3 0.0025 8.4E-08 44.4 2.9 21 17-37 25-45 (247)
464 4b4t_I 26S protease regulatory 96.3 0.0025 8.5E-08 48.6 3.0 23 15-37 216-238 (437)
465 1sxj_C Activator 1 40 kDa subu 96.3 0.0024 8.3E-08 47.0 2.9 22 17-38 48-69 (340)
466 1fnn_A CDC6P, cell division co 96.2 0.0027 9.1E-08 47.2 3.0 22 17-38 46-67 (389)
467 2r62_A Cell division protease 96.2 0.0011 3.8E-08 47.0 0.9 21 17-37 46-66 (268)
468 3bk7_A ABC transporter ATP-bin 96.2 0.0038 1.3E-07 49.8 4.0 24 17-40 384-407 (607)
469 1pzn_A RAD51, DNA repair and r 96.2 0.0026 8.9E-08 47.2 2.8 22 17-38 133-154 (349)
470 4a82_A Cystic fibrosis transme 96.2 0.0016 5.5E-08 51.6 1.8 22 17-38 369-390 (578)
471 2px0_A Flagellar biosynthesis 96.2 0.0027 9.4E-08 46.0 2.8 85 64-159 183-273 (296)
472 3j16_B RLI1P; ribosome recycli 96.2 0.0029 1E-07 50.4 3.1 24 18-41 381-404 (608)
473 2qp9_X Vacuolar protein sortin 96.2 0.0029 1E-07 47.0 3.0 24 15-38 84-107 (355)
474 3crm_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 46.3 3.0 22 16-37 6-27 (323)
475 4b4t_H 26S protease regulatory 96.1 0.0026 8.9E-08 48.9 2.6 24 14-37 242-265 (467)
476 1vma_A Cell division protein F 96.1 0.0033 1.1E-07 45.9 3.0 85 64-160 187-284 (306)
477 3qf4_A ABC transporter, ATP-bi 96.1 0.0022 7.5E-08 50.9 2.2 22 17-38 371-392 (587)
478 3d3q_A TRNA delta(2)-isopenten 96.1 0.0033 1.1E-07 46.5 3.0 22 16-37 8-29 (340)
479 3hws_A ATP-dependent CLP prote 96.1 0.0032 1.1E-07 46.7 3.0 25 14-38 50-74 (363)
480 3uk6_A RUVB-like 2; hexameric 96.1 0.003 1E-07 46.8 2.8 23 16-38 71-93 (368)
481 1sxj_D Activator 1 41 kDa subu 96.1 0.0032 1.1E-07 46.2 3.0 22 17-38 60-81 (353)
482 3m6a_A ATP-dependent protease 96.1 0.0031 1E-07 49.6 2.9 21 17-37 110-130 (543)
483 2v1u_A Cell division control p 96.1 0.0029 9.8E-08 46.9 2.6 23 15-37 44-66 (387)
484 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0032 1.1E-07 49.0 2.9 21 18-38 67-87 (499)
485 2bjv_A PSP operon transcriptio 96.1 0.0036 1.2E-07 44.3 3.0 24 16-39 30-53 (265)
486 3pfi_A Holliday junction ATP-d 96.1 0.0039 1.3E-07 45.7 3.2 24 15-38 55-78 (338)
487 2ce7_A Cell division protein F 96.1 0.0035 1.2E-07 48.5 3.0 21 17-37 51-71 (476)
488 3qks_A DNA double-strand break 96.1 0.0042 1.4E-07 42.4 3.1 19 18-36 26-44 (203)
489 2qgz_A Helicase loader, putati 96.1 0.004 1.4E-07 45.4 3.2 23 15-37 152-174 (308)
490 1a7j_A Phosphoribulokinase; tr 96.0 0.002 6.7E-08 46.6 1.5 23 15-37 5-27 (290)
491 3d8b_A Fidgetin-like protein 1 96.0 0.0037 1.3E-07 46.4 3.0 25 14-38 116-140 (357)
492 1um8_A ATP-dependent CLP prote 96.0 0.0038 1.3E-07 46.6 3.0 24 15-38 72-95 (376)
493 2z4s_A Chromosomal replication 96.0 0.0037 1.3E-07 47.9 2.9 22 16-37 131-152 (440)
494 3pxg_A Negative regulator of g 96.0 0.0037 1.3E-07 48.2 2.9 24 15-38 201-224 (468)
495 3tqf_A HPR(Ser) kinase; transf 96.0 0.0045 1.5E-07 41.4 2.9 24 16-39 17-40 (181)
496 3exa_A TRNA delta(2)-isopenten 95.9 0.005 1.7E-07 45.1 3.2 22 17-38 5-26 (322)
497 2r44_A Uncharacterized protein 95.9 0.003 1E-07 46.2 2.0 21 17-37 48-68 (331)
498 2h92_A Cytidylate kinase; ross 95.9 0.0046 1.6E-07 42.3 2.9 22 16-37 4-25 (219)
499 2qby_B CDC6 homolog 3, cell di 95.9 0.0043 1.5E-07 46.1 2.9 22 16-37 46-67 (384)
500 2zan_A Vacuolar protein sortin 95.9 0.0044 1.5E-07 47.4 3.0 24 15-38 167-190 (444)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.4e-39 Score=228.45 Aligned_cols=152 Identities=38% Similarity=0.676 Sum_probs=133.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
+.+.+||+|+|.+|+|||||+++|+.+.|...+.+|.+.++..+.+..++..+.++|||++|+++|..++..++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34579999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|||+++++||+.+..|+..+......++|++|||||+|+. ..+++..+++++++++++++|++|||++|+
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~-~~r~V~~~e~~~~a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKELNVMFIETSAKAGY 161 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH-hcCcccHHHHhhHHHHhCCeeEEEeCCCCc
Confidence 999999999999999999999988877789999999999998 678899999999999999999999999985
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=203.62 Aligned_cols=156 Identities=47% Similarity=0.855 Sum_probs=131.4
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
..+..+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++++
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 34556778999999999999999999999999888888888878888888889988999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
+|++|+|||++++++++.+..|+..+......+.|++||+||+|+. ..+.+..++++++++..++ ++++|||++|+
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-ELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-cccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 9999999999999999999999999988776689999999999997 4566778889999999999 99999999984
No 3
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.8e-34 Score=198.30 Aligned_cols=158 Identities=51% Similarity=0.930 Sum_probs=142.0
Q ss_pred CCCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhc
Q 031201 6 ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (164)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~ 85 (164)
.......+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..++
T Consensus 13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 92 (189)
T 2gf9_A 13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92 (189)
T ss_dssp -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGG
T ss_pred CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhc
Confidence 33346667899999999999999999999999998888888888888888888888899999999999999999999999
Q ss_pred ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+.+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-DERVVPAEDGRRLADDLGFEFFEASAKENI 170 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 999999999999999999999999999988776689999999999997 456667788999999999999999999984
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=201.46 Aligned_cols=154 Identities=47% Similarity=0.868 Sum_probs=140.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
...+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34577899999999999999999999999998888889888888888899999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++|++|||++|+
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-ERREVSQQRAEEFSEAQDMYYLETSAKESD 174 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999988776689999999999997 456677788999999999999999999985
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=4.6e-35 Score=200.07 Aligned_cols=154 Identities=71% Similarity=1.186 Sum_probs=112.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
+..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 34567899999999999999999999999888888888888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..+++++++||++|+
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-DKRQVSKERGEKLALDYGIKFMETSAKANI 156 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-SCCCSCHHHHHHHHHHHTCEEEECCC---C
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-ccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999999999988766689999999999997 456677888999999999999999999984
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.9e-34 Score=198.57 Aligned_cols=155 Identities=49% Similarity=0.876 Sum_probs=137.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.......+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 45668899999999999999999999999999888888888888888888999999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-SRRDVKREEGEAFAREHGLIFMETSAKTAC 169 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-CccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999999999988776789999999999997 456677888999999999999999999984
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.4e-34 Score=196.86 Aligned_cols=157 Identities=44% Similarity=0.777 Sum_probs=142.0
Q ss_pred CCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcc
Q 031201 7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (164)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~ 86 (164)
+|.+..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++
T Consensus 2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 45566788999999999999999999999999998888888888888888888999899999999999999999999999
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..++++++|||++|+
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLEASRFAQENELMFLETSALTGE 158 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 99999999999999999999999999888776789999999999997 456677788999999999999999999984
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=196.18 Aligned_cols=155 Identities=64% Similarity=1.089 Sum_probs=143.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
....+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 44557889999999999999999999999999998889999889889999999999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.+++...+++|+++||++|+
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPFLETSAKNAT 164 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEEECTTTCT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 999999999999999999999999988877789999999999997 566777788999999999999999999984
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.1e-34 Score=194.26 Aligned_cols=155 Identities=43% Similarity=0.833 Sum_probs=140.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
....+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 35567899999999999999999999999998888888888888888888899999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-AQRDVTYEEAKQFAEENGLLFLEASAKTGE 163 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999999999988776689999999999997 456677788999999999999999999984
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=193.51 Aligned_cols=155 Identities=55% Similarity=0.984 Sum_probs=136.9
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
|.+..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++++
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34566789999999999999999999999999888888888888888889999999999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|++|+|||++++++++.+..|+..+....+ +.|+++|+||+|+. ..+.+..+++..++...+++++++||++|+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDP-ERKVVETEDAYKFAGQMGIQLFETSAKENV 156 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCc-hhcccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 9999999999999999999999999987665 79999999999997 456677788999999999999999999984
No 11
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=195.95 Aligned_cols=155 Identities=43% Similarity=0.798 Sum_probs=140.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.+..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||.+.+..++..+++++
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 45667889999999999999999999999999888888888888888888889999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++..+++..++++++|||++|+
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-QAREVPTEEARMFAENNGLLFLETSALDST 173 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999999999987766689999999999997 445667788999999999999999999984
No 12
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.2e-33 Score=196.61 Aligned_cols=153 Identities=58% Similarity=1.013 Sum_probs=140.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 45778999999999999999999999999988888888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..+++++++||++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 156 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADANKMPFLETSALDST 156 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 9999999999999999999999988776689999999999997 456677788999999999999999999984
No 13
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.1e-33 Score=190.50 Aligned_cols=152 Identities=43% Similarity=0.768 Sum_probs=138.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
+...+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35689999999999999999999999998888888888888888888899899999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..+++++++||++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-NKRAVDFQEAQSYADDNSLLFMETSAKTSM 154 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999999999988766689999999999997 445667788999999999999999999984
No 14
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.8e-33 Score=191.61 Aligned_cols=154 Identities=36% Similarity=0.675 Sum_probs=139.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34567899999999999999999999999998888888888888888888998999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-DARKVTAEDAQTYAQENGLFFMETSAKTAT 160 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEECCSSSCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-ccccCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 99999999999999999999999988776689999999999997 456677888999999999999999999984
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-33 Score=194.16 Aligned_cols=153 Identities=53% Similarity=0.965 Sum_probs=139.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||.+.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34678999999999999999999999999988888888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..++++++|||++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-DERVVSSERGRQLADHLGFEFFEASAKDNI 156 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-TSCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-cccccCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 9999999999999999999999988776689999999999997 456677788999999999999999999884
No 16
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=197.40 Aligned_cols=156 Identities=43% Similarity=0.853 Sum_probs=132.3
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
.+++....+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..++++
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 34566789999999999999999999999999888888888888888888899999999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh-CCcEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~ 164 (164)
+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++.. ++++++|||++|+
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-TDREITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 9999999999999999999999999988777789999999999997 45667778888998884 7899999999984
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-33 Score=188.83 Aligned_cols=151 Identities=40% Similarity=0.718 Sum_probs=137.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999999888888888888888888889999999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES--KRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+......+.|+++|+||+|+.+. .+.+..++++++++..+++++++||++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999998877668999999999999643 25677788999999999999999999984
No 18
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=6.2e-34 Score=191.99 Aligned_cols=152 Identities=36% Similarity=0.752 Sum_probs=131.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
..+.+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999998888888888888878888888899999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-KERHVSIQEAESYAESVGAKHYHTSAKQNK 154 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999999999999877665679999999999997 456677788999999999999999999984
No 19
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.1e-34 Score=195.67 Aligned_cols=155 Identities=35% Similarity=0.679 Sum_probs=138.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
++..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 34557889999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-DIREVPLKDAKEYAESIGAIVVETSAKNAI 171 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTTTCEEEECBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 999999999999999999999999988776689999999999997 456677888999999999999999999974
No 20
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=197.47 Aligned_cols=154 Identities=44% Similarity=0.758 Sum_probs=128.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
+..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 44578899999999999999999999999988888888888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..+++|++|||++|+
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 173 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGE 173 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999988776789999999999997 456677788999999999999999999984
No 21
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.1e-33 Score=198.31 Aligned_cols=156 Identities=21% Similarity=0.479 Sum_probs=132.4
Q ss_pred CCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcc
Q 031201 7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (164)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~ 86 (164)
+..+.....+||+|+|.+|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.|||++|++.+..++..+++
T Consensus 19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 97 (214)
T 3q3j_B 19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 97 (214)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence 3445667789999999999999999999999999988888888665 456677888899999999999999999999999
Q ss_pred cccEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-
Q 031201 87 GAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI- 153 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~- 153 (164)
++|++|+|||++++++++. +..|+..+....+ +.|+++|+||+|+.++ .+.+..+++.++++.+++
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 9999999999999999999 6889999988765 8999999999999743 367888999999999999
Q ss_pred cEEEEeccCCC
Q 031201 154 KFFETVMQRQI 164 (164)
Q Consensus 154 ~~~~~Sa~~g~ 164 (164)
+|++|||++|+
T Consensus 177 ~~~e~SA~~g~ 187 (214)
T 3q3j_B 177 IYLEGSAFTSE 187 (214)
T ss_dssp EEEECCTTTCH
T ss_pred EEEEeccCCCc
Confidence 99999999973
No 22
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-35 Score=201.45 Aligned_cols=154 Identities=54% Similarity=0.994 Sum_probs=141.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
+..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++++|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 45578899999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++.+++..+++++++||++|+
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-EERVVPTEKGQLLAEQLGFDFFEASAKENI 171 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 99999999999999999999999988876789999999999997 566777888999999999999999999984
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4e-33 Score=187.87 Aligned_cols=151 Identities=37% Similarity=0.695 Sum_probs=138.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999988888888888888888888999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++.+++.+..|+..+........|+++|+||+|+. ..+++..+++..+++..+++++++||++|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-DVREVMERDAKDYADSIHAIFVETSAKNAI 154 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 99999999999999999999988766789999999999997 455677788999999999999999999874
No 24
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.6e-33 Score=193.60 Aligned_cols=153 Identities=42% Similarity=0.824 Sum_probs=136.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-hhhhhhcccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGA 88 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~-~~~~~~~~~~ 88 (164)
......+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.|||+||++.+. .++..+++++
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 345678999999999999999999999999988888888888888888899988999999999999888 8889999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-SAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 99999999999999999999999987765 4579999999999997 45667778899999999999999999987
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.3e-33 Score=190.83 Aligned_cols=155 Identities=32% Similarity=0.543 Sum_probs=137.3
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
+.......+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++++
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 89 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc
Confidence 345667899999999999999999999999998888888887666 6777889999999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEecc-CCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQ-RQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~ 164 (164)
+|++|+|||++++++++.+..|+..+... ...+.|+++|+||+|+. ..+.+..++++++++.++++|+++||+ +|+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-hccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 99999999999999999999999888664 34579999999999997 567788889999999999999999999 773
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-33 Score=189.15 Aligned_cols=154 Identities=50% Similarity=0.950 Sum_probs=131.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
+..+..+||+|+|++|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 44578899999999999999999999998885 46678888888777788899999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA-HERVVKREDGEKLAKEYGLPFMETSAKTGL 159 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT-SCCCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999999999999988776689999999999997 456677788999999999999999999984
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.7e-33 Score=189.68 Aligned_cols=149 Identities=62% Similarity=1.100 Sum_probs=130.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 57899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+......+.|+++|+||+|+. .+....+++.++++..+++++++||++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDD 150 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 9999999999999999999988876689999999999993 45567788999999999999999999974
No 28
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.3e-34 Score=196.63 Aligned_cols=155 Identities=45% Similarity=0.771 Sum_probs=126.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++++|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34567899999999999999999999999988888888888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-----SKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ..+.+..+++.++++..+++|++|||++|+
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 999999999999999999999998887666899999999999962 356677788999999999999999999984
No 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.6e-33 Score=189.06 Aligned_cols=151 Identities=38% Similarity=0.700 Sum_probs=138.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999999998888888888888888899999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++..+++..+++++++||++|+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-DKRQVSTEEGERKAKELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-ccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999999887766689999999999997 456677788999999999999999999874
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.2e-33 Score=188.04 Aligned_cols=150 Identities=35% Similarity=0.713 Sum_probs=136.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 56899999999999999999999999988888888888888888888998999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL-DDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 152 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 9999999999999999999887766 479999999999997 445667788999999999999999999874
No 31
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.3e-33 Score=197.84 Aligned_cols=155 Identities=49% Similarity=0.916 Sum_probs=136.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCE----------EEEEEEeeCCCccccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERFR 78 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~d~~g~~~~~ 78 (164)
.+..++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.|||+||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 455688999999999999999999999999998888888888887777777665 7899999999999999
Q ss_pred hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEE
Q 031201 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
..+..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++++++..++++++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-DQREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-cccccCHHHHHHHHHHCCCcEEE
Confidence 9999999999999999999999999999999888766543 579999999999997 45567778899999999999999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
|||++|+
T Consensus 178 ~Sa~~g~ 184 (217)
T 2f7s_A 178 TSAATGQ 184 (217)
T ss_dssp EBTTTTB
T ss_pred EECCCCC
Confidence 9999984
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=7.3e-33 Score=188.80 Aligned_cols=151 Identities=30% Similarity=0.498 Sum_probs=134.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|++|+|||||+++|.++.+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++++|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 35689999999999999999999999888888888888666 67778899999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.++++..+++|+++||++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-MERVISYEEGKALAESWNAAFLESSAKENQ 154 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEECCTTSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcceecHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999999999999988866543 479999999999997 567788899999999999999999999873
No 33
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=191.54 Aligned_cols=151 Identities=27% Similarity=0.446 Sum_probs=128.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+|+|.+|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.|||++|++.+..+ ..+++++|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3457789999999999999999999999998888888887655 456778899999999999999988875 67899999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEec-cCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVM-QRQ 163 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~g 163 (164)
++|+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++.++++.++++|++||| ++|
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-QYRQVTKAEGVALAGRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECCSSSCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-hcCccCHHHHHHHHHHcCCcEEEEeecCcc
Confidence 9999999999999999999999887764 2479999999999997 45677788899999999999999999 787
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=194.07 Aligned_cols=154 Identities=26% Similarity=0.358 Sum_probs=128.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-hhhhhcccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGA 88 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-~~~~~~~~~ 88 (164)
......+||+|+|.+|+|||||+++|++..+.....++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++++
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456789999999999999999999986544333444555566677788899999999999999987765 777888999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++++|+.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++++++..+++|++|||++|+
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIETSAALHH 173 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-ccCCcCHHHHHHHHHHhCCEEEEEcCCCCC
Confidence 999999999999999999999998877654 479999999999997 456677888999999999999999999984
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.7e-33 Score=188.25 Aligned_cols=154 Identities=34% Similarity=0.580 Sum_probs=135.4
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
..+....+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 345667899999999999999999999999888888888876655 6678888889999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++|||++++++++.+..|+..+.. ....+.|+++|+||+|+. ..+.+..+++..++...+++++++||++|+
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-SQRQVPRSEASAFGASHHVAYFEASAKLRL 157 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999999999999988844 444579999999999997 456677788999999999999999999984
No 36
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-33 Score=196.49 Aligned_cols=153 Identities=52% Similarity=0.880 Sum_probs=130.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 34778999999999999999999999999988888888888888888899988999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|||++++.+++.+..|+..+......+.|++||+||+|+. ..+.+..+++.++++..+++|+++||++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFTETSALNSE 161 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-GGCCSCHHHHHHHHHHTTCEEEECCCC-CC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988766689999999999997 455677788999999999999999999984
No 37
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.8e-33 Score=191.11 Aligned_cols=152 Identities=32% Similarity=0.537 Sum_probs=133.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-EEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999988877788887778888888876 67899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|||++++++++.+..|+..+..... ..+|+++|+||+|+. ..+.+..+++.++++..+++++++||++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRFCQENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-cccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 9999999999999999999988876432 234489999999997 456677788999999999999999999984
No 38
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-33 Score=194.09 Aligned_cols=159 Identities=23% Similarity=0.535 Sum_probs=130.4
Q ss_pred CCCCCCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhh
Q 031201 3 APPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~ 82 (164)
..+..|.......+||+|+|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.|||++|++.+..++.
T Consensus 16 ~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 94 (205)
T 1gwn_A 16 PRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRP 94 (205)
T ss_dssp -----------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGG
T ss_pred CCCCCCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHH
Confidence 34555666678899999999999999999999999999888888877655 45667788889999999999999999999
Q ss_pred hhcccccEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHH
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADE 150 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~ 150 (164)
.+++++|++|+|||++++++++.+ ..|+..+....+ +.|+++|+||+|+.+. .+.+..+++.++++.
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 173 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH
Confidence 999999999999999999999999 679888877654 7999999999999732 356778889999999
Q ss_pred hC-CcEEEEecc-CC
Q 031201 151 YG-IKFFETVMQ-RQ 163 (164)
Q Consensus 151 ~~-~~~~~~Sa~-~g 163 (164)
.+ ++|++|||+ +|
T Consensus 174 ~~~~~~~e~SAk~~~ 188 (205)
T 1gwn_A 174 IGAATYIECSALQSE 188 (205)
T ss_dssp HTCSEEEECCTTTCH
T ss_pred cCCCEEEEeeeccCC
Confidence 88 699999998 44
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.6e-32 Score=186.24 Aligned_cols=152 Identities=39% Similarity=0.711 Sum_probs=132.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999999888888888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccchHHHHHHHH-HhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~ 164 (164)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++.++++ ..+++++++||++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 9999999999999999999998876653 578999999999996 45667788889988 567899999999984
No 40
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.8e-32 Score=189.05 Aligned_cols=153 Identities=30% Similarity=0.598 Sum_probs=134.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+++|.+|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.+||+||++.+..++..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 45577899999999999999999999999998888888876654 46778899999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccchHHHHHHHHHhCCc-EEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYGIK-FFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~ 164 (164)
++|+|||++++++++.+ ..|+..+..... +.|+++|+||+|+.+. .+.+..+++.++++..+++ |++|||++|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence 99999999999999998 558888876654 7999999999999742 4677888999999999997 9999999984
No 41
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=188.84 Aligned_cols=157 Identities=45% Similarity=0.820 Sum_probs=139.2
Q ss_pred CCCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhc
Q 031201 6 ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (164)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~ 85 (164)
..+.......+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++
T Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 85 (195)
T 1x3s_A 6 SGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85 (195)
T ss_dssp ---CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH
T ss_pred CCcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh
Confidence 34555667789999999999999999999999999888888888888888888999999999999999999999999999
Q ss_pred ccccEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++.++++..+++++++||++|+
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCD 163 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 999999999999999999999999998877643 479999999999995 45566788999999999999999999984
No 42
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.7e-33 Score=190.00 Aligned_cols=154 Identities=40% Similarity=0.710 Sum_probs=121.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
.....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999999888888888877777777776 55689999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccchHHHHHHHH-HhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+..+.+..+++.++++ ..++++++|||++|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988876653 5789999999999965566677788889988 467899999999984
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=9.1e-33 Score=186.20 Aligned_cols=149 Identities=26% Similarity=0.361 Sum_probs=118.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch-hhhhhcccccEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL 93 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-~~~~~~~~~~~~i~ 93 (164)
.+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999998777766666666777888888999999999999999988876 67778889999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.++++..+++|++|||++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIETSAALHH 152 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-hcccCCHHHHHHHHHHcCCcEEEecCccCC
Confidence 9999999999999999998877654 479999999999997 567788889999999999999999999984
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.1e-32 Score=188.02 Aligned_cols=154 Identities=51% Similarity=0.937 Sum_probs=136.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEE-EEEEEECCE---------EEEEEEeeCCCccccch
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRT 79 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~d~~g~~~~~~ 79 (164)
+..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||++.+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 35678899999999999999999999999988888888887776 566666655 78999999999999999
Q ss_pred hhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEE
Q 031201 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (164)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (164)
.+..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.++++..+++++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-DQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999887664 579999999999997 455677788999999999999999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|+
T Consensus 165 Sa~~~~ 170 (195)
T 3bc1_A 165 SAANGT 170 (195)
T ss_dssp CTTTCT
T ss_pred ECCCCC
Confidence 999884
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.1e-32 Score=187.63 Aligned_cols=149 Identities=21% Similarity=0.357 Sum_probs=128.6
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.......+||+|+|++|+|||||+++++++.+...+.++.+ .+...+.+++..+.+.|||++|++.+. +++++
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 34667889999999999999999999999998887777643 345788889999999999999988766 67889
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCCccchHHHHHHHHHhC-CcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMD-ESKRAVPTSKGQALADEYG-IKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 164 (164)
|++++|||++++++|+.+..|+..+..... .+.|+++|+||+|+. ...+.+..+++.++++..+ ++|++|||++|+
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 999999999999999999999999977653 479999999999995 2456778888999999997 899999999984
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-32 Score=190.90 Aligned_cols=153 Identities=61% Similarity=1.097 Sum_probs=135.9
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34567899999999999999999999999988888888888888888889999899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++.++++..+++++++||++|+
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDD 167 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999988777689999999999994 45566788899999999999999999874
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=192.23 Aligned_cols=152 Identities=29% Similarity=0.520 Sum_probs=128.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
.+....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+..++..+++++|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 4556789999999999999999999999999888888887665 566666777789999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
++|+|||++++++++.+..|+..+..... .++|+++|+||+|+. ..+.+..+++..+++..+++|+++||++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSAREN 171 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECCTTCH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-cccccCHHHHHHHHHHhCCeEEEEeCCCC
Confidence 99999999999999999999998876533 478999999999997 56677788899999999999999999987
No 48
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-32 Score=188.97 Aligned_cols=153 Identities=27% Similarity=0.561 Sum_probs=134.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 3446889999999999999999999999988888777776554 456677888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEE
Q 031201 90 GILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF 156 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (164)
++|+|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+. .+.+..+++.++++.+++ +|+
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999998 69888887765 7999999999999743 246778889999999998 999
Q ss_pred EEeccCCC
Q 031201 157 ETVMQRQI 164 (164)
Q Consensus 157 ~~Sa~~g~ 164 (164)
+|||++|+
T Consensus 171 ~~Sa~~g~ 178 (194)
T 2atx_A 171 ECSALTQK 178 (194)
T ss_dssp ECCTTTCT
T ss_pred EeeCCCCC
Confidence 99999984
No 49
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.2e-32 Score=186.43 Aligned_cols=151 Identities=24% Similarity=0.565 Sum_probs=130.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....+||+|+|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++++|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 356789999999999999999999999998888888877655 3566778888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhC-CcEEE
Q 031201 91 ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFE 157 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 157 (164)
+|+|||++++++++.+ ..|+..+....+ +.|+++|+||+|+.+. .+.+..+++.+++++++ ++|++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 568888877654 7999999999999732 35677888999999988 69999
Q ss_pred Eecc-CC
Q 031201 158 TVMQ-RQ 163 (164)
Q Consensus 158 ~Sa~-~g 163 (164)
|||+ +|
T Consensus 161 ~Sa~~~~ 167 (184)
T 1m7b_A 161 CSALQSE 167 (184)
T ss_dssp CBTTTBH
T ss_pred eeecCCC
Confidence 9998 44
No 50
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=188.00 Aligned_cols=153 Identities=29% Similarity=0.549 Sum_probs=124.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+|+|.+|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 4567889999999999999999999999888877777776444 466778888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEE
Q 031201 90 GILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF 156 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (164)
++|+|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+. .+.+..+++..+++..++ +|+
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999997 69988887765 8999999999999743 356778889999999998 999
Q ss_pred EEeccCCC
Q 031201 157 ETVMQRQI 164 (164)
Q Consensus 157 ~~Sa~~g~ 164 (164)
+|||++|+
T Consensus 173 ~~Sa~~g~ 180 (201)
T 2q3h_A 173 ECSALTQK 180 (201)
T ss_dssp ECCTTTCT
T ss_pred EEecCCCC
Confidence 99999984
No 51
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.5e-32 Score=187.17 Aligned_cols=153 Identities=31% Similarity=0.569 Sum_probs=134.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3445689999999999999999999999988888777776544 466778888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.++++.++++++++||++|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-ccccccHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 99999999999999999999999877654 579999999999997 455677888999999999999999999984
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.2e-32 Score=183.34 Aligned_cols=150 Identities=30% Similarity=0.428 Sum_probs=119.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc--cchhhhhhcccccE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG 90 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--~~~~~~~~~~~~~~ 90 (164)
...+||+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 357999999999999999999999987765433 345566677788899999999999999887 56677788899999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..++++.++...++++++|||++|+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEEGRACAVVFDCKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHHTSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc-cccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 999999999999999999998887653 3479999999999997 456677788899999999999999999984
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1e-31 Score=185.82 Aligned_cols=149 Identities=32% Similarity=0.579 Sum_probs=132.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEE----------------------------
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------------------- 63 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 63 (164)
.+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4568999999999999999999999999988888888888887777777655
Q ss_pred ---------EEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 64 ---------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 64 ---------~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
+.+.|||+||++.+...+..+++.+|++|+|||++++.+++.+..|+..+..... .|+++|+||+|+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~-- 159 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK-- 159 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC--
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc--
Confidence 8999999999999999999999999999999999999999999999998877654 899999999993
Q ss_pred CCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 135 SKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
..+.+..++++++++..+++++++||++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 189 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGT 189 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ccccCCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 456777889999999999999999999984
No 54
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3.6e-32 Score=189.01 Aligned_cols=152 Identities=38% Similarity=0.713 Sum_probs=133.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45678999999999999999999999999988888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccchHHHHHHHH-HhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~ 164 (164)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 9999999999999999999988876543 478999999999996 45566777888887 667899999999984
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.1e-32 Score=182.42 Aligned_cols=149 Identities=34% Similarity=0.615 Sum_probs=130.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 368999999999999999999999988888888777554 3566778888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh-CCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++.++++.. +++++++||++|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSKI 152 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTSCEEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-ccccCCHHHHHHHHHHccCCcEEEecCCCCC
Confidence 999999999999999988887653 3579999999999997 45667778899999988 7899999999984
No 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.1e-32 Score=181.19 Aligned_cols=149 Identities=32% Similarity=0.597 Sum_probs=129.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999988877777776544 4556788888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNVNYVETSAKTRA 152 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 9999999999999999998877654 479999999999997 455677888999999999999999999984
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=6.6e-32 Score=184.49 Aligned_cols=152 Identities=31% Similarity=0.573 Sum_probs=132.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999988887777776544 4566788888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++++++..+++++++||++|+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVETSAKTRA 166 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 9999999999999999999988877654 479999999999997 455677788999999999999999999984
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=5.8e-33 Score=192.92 Aligned_cols=152 Identities=24% Similarity=0.467 Sum_probs=101.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEECCE--EEEEEEeeCCCccccchhhhhhcccc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
...+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.|||+||++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57899999999999999999999998 787788888877777788888876 88999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC-CC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR-QI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-g~ 164 (164)
|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+..+.+..+++.++++.+++++++|||++ |+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988766 68999999999999732567778889999999999999999999 74
No 59
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.2e-31 Score=186.06 Aligned_cols=154 Identities=29% Similarity=0.590 Sum_probs=132.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.......+||+|+|.+|+|||||++++.+..+...+.++.+.++. ..+..++..+.+.|||+||++.+..++..+++++
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 97 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCC
Confidence 345578899999999999999999999999988887787776554 4467788889999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHhCC-cE
Q 031201 89 MGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KF 155 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~ 155 (164)
|++|+|||++++++++.+ ..|+..+....+ +.|+++|+||+|+.+.. +.+..+++.++++..++ +|
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 999999999999999999 568888877654 79999999999997431 45677889999999998 99
Q ss_pred EEEeccCCC
Q 031201 156 FETVMQRQI 164 (164)
Q Consensus 156 ~~~Sa~~g~ 164 (164)
++|||++|+
T Consensus 177 ~~~SA~~g~ 185 (201)
T 2gco_A 177 LECSAKTKE 185 (201)
T ss_dssp EECCTTTCT
T ss_pred EEeeCCCCC
Confidence 999999984
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=9.5e-32 Score=180.39 Aligned_cols=148 Identities=36% Similarity=0.632 Sum_probs=130.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|++|+|||||++++.++.+...+.++.+. .....+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3589999999999999999999999888877777664 346677888988999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+++..+++..+++..+++++++||++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-SEREVSSSEGRALAEEWGCPFMETSAKSK 150 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSCEEEECTTCH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-ccccCCHHHHHHHHHHhCCCEEEecCCCC
Confidence 9999999999999999888876543 579999999999997 45667778889999999999999999987
No 61
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=198.68 Aligned_cols=155 Identities=64% Similarity=1.089 Sum_probs=131.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
....+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++++
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 34457789999999999999999999999999888888888888888899999999999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..+++++++||++|+
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPFLETSAKNAT 181 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---H
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-ccccCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 999999999999999999999999988777789999999999997 455666677889999999999999999873
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1e-31 Score=180.53 Aligned_cols=147 Identities=30% Similarity=0.418 Sum_probs=107.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|++|+|||||++++.+..+... .++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665433 33334333 46678899999999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++..++...++++++|||++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRACAVVFDCKFIETSAALHH 149 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-SSCCSCHHHHHHHHHHTTCEEEECBGGGTB
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-cccccCHHHHHHHHHHhCCcEEEeccCCCC
Confidence 99999999999999998887653 3579999999999997 557788888999999999999999999984
No 63
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.4e-31 Score=181.97 Aligned_cols=145 Identities=23% Similarity=0.370 Sum_probs=122.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||+++|.++.+.. +.++.+.. +...+.+++..+.+.+||++|++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999998876 66666643 467778899999999999999876 45778899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCccchHHHHHHHHHh-CCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|++.+.... ..+.|+++|+||+|+.+ ..+.+..+++.++++.. +++|++|||++|+
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 9999999999999999876665443 35799999999999952 45667788899999887 6899999999984
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-31 Score=187.82 Aligned_cols=153 Identities=27% Similarity=0.386 Sum_probs=124.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCC--CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-cchhhhhhcc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYR 86 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~ 86 (164)
......+||+|+|.+|+|||||+++|++.. +...+ ++.+.++..+.+.+++..+.+.+||++|.+. +..+...+++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 345677999999999999999999999643 33333 3355566677788899999999999999876 5556677888
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.++++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+. ..+.+..++++.++..++++|++|||++|+
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-cCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999988876542 3479999999999997 456677788889999999999999999984
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=3.9e-31 Score=181.63 Aligned_cols=153 Identities=33% Similarity=0.548 Sum_probs=121.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
..++-..+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.|||+||++.+..++..+++.+
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTC
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC
Confidence 34456779999999999999999999999888777777665443 46677888889999999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ +....++++++++..+++++++||++|+
T Consensus 94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQ 168 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999999999988877654 4799999999999973 5566788999999999999999999984
No 66
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-31 Score=185.02 Aligned_cols=151 Identities=33% Similarity=0.510 Sum_probs=131.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 346689999999999999999999999998888888877554 45677888899999999999887 7778889999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++.++++..+++|++|||++|+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-HSRQVSTEEGEKLATELACAFYECSACTGE 175 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHhCCeEEEECCCcCC
Confidence 999999999999999999998887754 3579999999999997 446677888999999999999999999984
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.9e-31 Score=181.31 Aligned_cols=150 Identities=31% Similarity=0.611 Sum_probs=131.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999988887777776444 456778899999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEe
Q 031201 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETV 159 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (164)
+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+.+. .+.+..+++.++++..++ ++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999998 58888887765 7999999999999643 256677889999999998 999999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 161 a~~g~ 165 (186)
T 1mh1_A 161 ALTQR 165 (186)
T ss_dssp TTTCT
T ss_pred CCCcc
Confidence 99984
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4.9e-31 Score=180.54 Aligned_cols=149 Identities=35% Similarity=0.591 Sum_probs=129.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+|+|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988877777765 445567788899999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+. .+....+++..+++..+++++++||++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARSYGIPFIETSAKTRQ 151 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999999998877543 579999999999996 45667788999999999999999999984
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=186.96 Aligned_cols=151 Identities=32% Similarity=0.627 Sum_probs=111.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|.+|+|||||+++|+++.+...+.++....+ ...+.+++..+.+.|||+||++.+..++..+++++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 35679999999999999999999999888877777775433 56678889999999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHhCC-cEEEE
Q 031201 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET 158 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (164)
|+|||++++++++.+. .|+..+..... +.|+++|+||+|+.+.. +.+..+++.++++..++ +|++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999997 58888877654 79999999999997432 35677888999999998 99999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|+
T Consensus 189 SA~~g~ 194 (214)
T 2j1l_A 189 SARLHD 194 (214)
T ss_dssp BTTTTB
T ss_pred cCCCCC
Confidence 999984
No 70
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.98 E-value=1.3e-31 Score=187.09 Aligned_cols=151 Identities=31% Similarity=0.642 Sum_probs=129.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++++|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35689999999999999999999999998888878777544 45667788889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------ccchHHHHHHHHHhCC-cEEEEeccC
Q 031201 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-------AVPTSKGQALADEYGI-KFFETVMQR 162 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (164)
|+|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+... .+..+++.++++.+++ +|++|||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999997 69998887765 799999999999963221 2467888999999997 999999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 164 g~ 165 (212)
T 2j0v_A 164 QQ 165 (212)
T ss_dssp CT
T ss_pred CC
Confidence 85
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4e-31 Score=178.23 Aligned_cols=149 Identities=30% Similarity=0.478 Sum_probs=128.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
..+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888777777776544 3556778888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..+++..+++++++||++|+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-PSREVQSSEAEALARTWKCAFMETSAKLNH 152 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-cccccCHHHHHHHHHHhCCeEEEecCCCCc
Confidence 9999999999999998888876543 478999999999997 445666778899999999999999999974
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=7.5e-32 Score=189.05 Aligned_cols=153 Identities=29% Similarity=0.518 Sum_probs=130.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
.....+||+|+|.+|+|||||+++|++..+...+.++.+.+.....+... +..+.+.+||+||++.+..++..++.++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45678999999999999999999999988888777887766666665554 44489999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++..+++..++++++|||++|+
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-NRQKISKKLVMEVLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 99999999999999999999999988877679999999999997 455677788899999999999999999884
No 73
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=7.1e-32 Score=189.69 Aligned_cols=153 Identities=29% Similarity=0.615 Sum_probs=134.9
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
........+||+|+|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.|||+||++.+..++..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34566788999999999999999999988877777778888888888888889999999999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|++|+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.. . ..+...+++..+++|++|||++|+
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNLQYYDISAKSNY 160 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTCEEEECBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccc--c-cHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999999999999999999988765 79999999999997322 2 235677888999999999999874
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=7e-31 Score=182.97 Aligned_cols=151 Identities=31% Similarity=0.592 Sum_probs=125.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|.+|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.|||+||++.+..++..+++++|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 356789999999999999999999999988877777765554 4467888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHhCC-cEEEE
Q 031201 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET 158 (164)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (164)
|+|||++++++++.+ ..|+..+....+ +.|+++|+||+|+.+.. +.+..+++..++...++ ++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999 568888877654 79999999999996431 45677788999999998 99999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|+
T Consensus 180 SA~~g~ 185 (207)
T 2fv8_A 180 SAKTKE 185 (207)
T ss_dssp CTTTCT
T ss_pred eCCCCC
Confidence 999984
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=2.2e-30 Score=173.44 Aligned_cols=147 Identities=34% Similarity=0.572 Sum_probs=129.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEE
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (164)
.+||+++|++|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999988877777766543 356677888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
||++++++++.+..|+..+..... .+.|+++|+||+|+.+ +....+++.++++..+++++++||++|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQ 150 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCT
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999999998877654 4799999999999973 5566788999999999999999999984
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.6e-30 Score=179.58 Aligned_cols=150 Identities=31% Similarity=0.484 Sum_probs=129.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+..++..+.+.|||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34579999999999999999999999988877777776444 35567788889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ +.+..+++..+++..+++++++||++|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNY 156 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCC
Confidence 999999999999999988887766543 3689999999999963 5566788899999999999999999984
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=6.7e-32 Score=183.96 Aligned_cols=151 Identities=31% Similarity=0.634 Sum_probs=114.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 35679999999999999999999999988777777665333 23345566778899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---------ccchHHHHHHHHHhCC-cEEEEec
Q 031201 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR---------AVPTSKGQALADEYGI-KFFETVM 160 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa 160 (164)
++|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+... .+..+++.++++..++ +|++|||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999998 59888887765 799999999999963322 2467788999999997 9999999
Q ss_pred cCCC
Q 031201 161 QRQI 164 (164)
Q Consensus 161 ~~g~ 164 (164)
++|+
T Consensus 163 ~~~~ 166 (182)
T 3bwd_D 163 KSQE 166 (182)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 9985
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=8.8e-31 Score=182.20 Aligned_cols=152 Identities=31% Similarity=0.588 Sum_probs=128.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....+||+++|.+|+|||||+++++++.+...+.++.+ +.....+..++..+.+.|||+||++.+..++..+++++|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 346689999999999999999999999998887777775 3445667788888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHhCC-cEEE
Q 031201 91 ILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFE 157 (164)
Q Consensus 91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~ 157 (164)
+|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. +.+..+++..+++..++ +|++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999997 6888888776 479999999999997322 23677889999999997 6999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
|||++|+
T Consensus 184 ~SA~~g~ 190 (204)
T 4gzl_A 184 CSALTQR 190 (204)
T ss_dssp CCTTTCT
T ss_pred eeCCCCC
Confidence 9999985
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2.1e-31 Score=183.49 Aligned_cols=150 Identities=24% Similarity=0.319 Sum_probs=122.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc-----------ccceeeeEEEEEEE-EECCEEEEEEEeeCCCcccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERF 77 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~d~~g~~~~ 77 (164)
......+||+|+|++|+|||||++.+.+ .+... +.++.+.++....+ ..++..+.+.+||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3457789999999999999999976665 44443 33455555554444 56777889999999999999
Q ss_pred chhhhhhcccccEEEEEEECC------ChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh
Q 031201 78 RTITTAYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 151 (164)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (164)
..++..+++++|++|+|||++ +.++|+.+..|+..+.. ...+.|+++|+||+|+.+ .+..++++++++..
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPE 163 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhc
Confidence 999999999999999999999 56788888888887743 234899999999999974 26778899999999
Q ss_pred CC-cEEEEeccCCC
Q 031201 152 GI-KFFETVMQRQI 164 (164)
Q Consensus 152 ~~-~~~~~Sa~~g~ 164 (164)
++ ++++|||++|+
T Consensus 164 ~~~~~~~~Sa~~~~ 177 (198)
T 3t1o_A 164 GKFPVLEAVATEGK 177 (198)
T ss_dssp CCSCEEECBGGGTB
T ss_pred CCceEEEEecCCCc
Confidence 99 99999999984
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=4.8e-30 Score=177.01 Aligned_cols=150 Identities=28% Similarity=0.399 Sum_probs=121.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-cchhhhhhccccc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM 89 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~~~~ 89 (164)
...+||+++|.+|+|||||+++|++. .+...+. +.+.++....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999999963 3344333 345566677788899999999999999775 5566777888999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++..++...+++|++|||++|+
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-ccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 9999999999999999999988877653 3478999999999997 456677788888989999999999999984
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=4.5e-30 Score=177.28 Aligned_cols=155 Identities=17% Similarity=0.314 Sum_probs=114.2
Q ss_pred CCCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhh
Q 031201 6 ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (164)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~ 84 (164)
+....+.....||+|+|.+|+|||||+++|++..+.. .+.++.+... ..+... .+.+.|||+||++.+..++..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHH
Confidence 3345677899999999999999999999999999888 7778777443 334433 4789999999999999999999
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCccchHHH--H-HHHHHhCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKVLVGNKADMDESKRAVPTSKG--Q-ALADEYGI 153 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~--~-~~~~~~~~ 153 (164)
++++|++|+|||++++++|+.+..|+..+..... .+.|+++|+||+|+.+........+. . .+++..++
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence 9999999999999999999999998887755421 27899999999999743211111111 1 11245678
Q ss_pred cEEEEeccCCC
Q 031201 154 KFFETVMQRQI 164 (164)
Q Consensus 154 ~~~~~Sa~~g~ 164 (164)
+|++|||++|+
T Consensus 164 ~~~~~Sa~~g~ 174 (199)
T 4bas_A 164 VIFASNGLKGT 174 (199)
T ss_dssp EEEECBTTTTB
T ss_pred EEEEeeCCCcc
Confidence 99999999984
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=3.9e-29 Score=173.12 Aligned_cols=151 Identities=50% Similarity=0.877 Sum_probs=132.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
+..+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999999988888888887888888899999999999999999999888888899999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||+.++.+++.+..|+..+......+.|+++++||+|+. ..+....+++..++.+.++.++++||++|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~ 153 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNNLSFIETSALDST 153 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999999999889888776655578999999999997 455666788999999999999999999874
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=4.5e-29 Score=171.94 Aligned_cols=154 Identities=49% Similarity=0.888 Sum_probs=137.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
...+..++|+|+|++|+|||||++++.+..++..+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 34467899999999999999999999999998888899888888888999999999999999999998888888999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.+++|||..+..+++.+..|+..+......+.|+++++||+|+. ..+....+++..++.+.++.++++||++++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNGLSFIETSALDST 177 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999998889888776655578999999999997 445566788999999999999999999874
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=174.20 Aligned_cols=149 Identities=19% Similarity=0.341 Sum_probs=117.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCC-CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
.......+||+|+|.+|+|||||+++|.+.. +...+.++.+ +....+.+++ +.+.+||+||++.+...+..++++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 3455678999999999999999999999987 5666666666 4455666665 689999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccchHHHHHHHH-----HhCCcEEEEe
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETV 159 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~S 159 (164)
+|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ....+++.++.. ..++++++||
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEcc
Confidence 9999999999999999999998888866543 4799999999999963 233455555553 2357899999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 168 a~~~~ 172 (190)
T 2h57_A 168 AIKGE 172 (190)
T ss_dssp TTTTB
T ss_pred CCCCc
Confidence 99984
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.7e-30 Score=177.44 Aligned_cols=150 Identities=21% Similarity=0.395 Sum_probs=116.7
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
.+......+||+|+|.+|+|||||+++|++..+...+.++.+.++. .+... .+.+.|||+||++.+..++..++++
T Consensus 15 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (188)
T 1zd9_A 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRG 90 (188)
T ss_dssp ----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTT
T ss_pred cccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHcc
Confidence 3455577899999999999999999999999988777787776554 34444 3789999999999999999999999
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEecc
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQ 161 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 161 (164)
+|++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. ...++++++|||+
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECC
Confidence 999999999999999999999888776532 2579999999999997421 112222211 1235689999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 168 ~g~ 170 (188)
T 1zd9_A 168 EKD 170 (188)
T ss_dssp TCT
T ss_pred CCC
Confidence 984
No 86
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.2e-30 Score=178.75 Aligned_cols=148 Identities=25% Similarity=0.460 Sum_probs=110.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEE---CCEEEEEEEeeCCCccccchhhhhhccccc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 89 (164)
.+||+|+|++|+|||||+++|++. .+...+.++.+.++....+.. ++..+.+.+||++|++.+..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999984 555666777777766555443 345678999999999999999999999999
Q ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc---hHHHHHHHHHhCCc----EEEEecc
Q 031201 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP---TSKGQALADEYGIK----FFETVMQ 161 (164)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 161 (164)
++++|||++++ .+++.+..|+..+....+ +.|+++|+||+|+.+ .+.+. .+.+..+++.++++ |+++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSD-EKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCC-HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCccc-chhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 589999999998876654 789999999999963 33322 34456777777887 9999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|.
T Consensus 160 ~~~ 162 (184)
T 2zej_A 160 EES 162 (184)
T ss_dssp SCC
T ss_pred cCc
Confidence 983
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=2.1e-29 Score=174.51 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=111.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||++++.++.+. .+.++.+.+ ...+.+++ +.+.+||+||++.+..++..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45679999999999999999999987764 345555543 34566676 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH-----------------hCCc
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----------------YGIK 154 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~ 154 (164)
+|||++++++|+.+..|+..+... ...+.|+++|+||+|+.+ .+..+++.++... .+++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEE
Confidence 999999999999999998887654 234799999999999973 4556777776653 3458
Q ss_pred EEEEeccCCC
Q 031201 155 FFETVMQRQI 164 (164)
Q Consensus 155 ~~~~Sa~~g~ 164 (164)
+++|||++|+
T Consensus 175 ~~~~SA~~g~ 184 (198)
T 1f6b_A 175 VFMCSVLKRQ 184 (198)
T ss_dssp EEECBTTTTB
T ss_pred EEEEECCCCC
Confidence 9999999984
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.5e-29 Score=172.61 Aligned_cols=148 Identities=20% Similarity=0.309 Sum_probs=113.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~ 88 (164)
.......+||+|+|.+|+|||||+++|.+..+ ..+.++.+.+. ..+.+++ +.+.+||+||++.+..++..+++++
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 45667789999999999999999999999887 44555555333 4455555 7899999999999999999999999
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEeccC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQR 162 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~ 162 (164)
|++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.. ...++++++|||++
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 99999999999999999999888776542 347999999999999632 2233333332 23456899999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 167 g~ 168 (181)
T 2h17_A 167 GE 168 (181)
T ss_dssp TB
T ss_pred Cc
Confidence 84
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=8.6e-29 Score=170.35 Aligned_cols=144 Identities=21% Similarity=0.303 Sum_probs=116.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||++++.++.+. .+.++.+.+ ...+.+++ +.+.+||+||++.+..++..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45679999999999999999999998765 345555543 45666776 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH------------hCCcEEEEe
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETV 159 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 159 (164)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+ ....+++.++... .+++|++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 999999999999999988887653 234799999999999973 4455666665443 356899999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 173 a~~g~ 177 (190)
T 1m2o_B 173 VVMRN 177 (190)
T ss_dssp TTTTB
T ss_pred CCcCC
Confidence 99984
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.9e-29 Score=169.19 Aligned_cols=145 Identities=23% Similarity=0.421 Sum_probs=113.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+++|++|+|||||+++|.++.+.. +.++.+ .....+.+++ +.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 3457999999999999999999999988754 455555 3445556654 6899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHH-----HHHHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQ-----ALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++.. .+++..++++++|||++|+
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---SSEMANSLGLPALKDRKWQIFKTSATKGT 154 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---HHHHHHHhCchhccCCceEEEECcCCCCc
Confidence 99999999999999988887775542 24799999999999974321 12222 2233346689999999984
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.6e-28 Score=181.68 Aligned_cols=150 Identities=30% Similarity=0.615 Sum_probs=132.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|.+|+|||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4568999999999999999999999988888777776444 566788899999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccchHHHHHHHHHhCC-cEEEEe
Q 031201 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETV 159 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (164)
+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+.+. .+.+..+++.++++..++ +|++||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999998 58888877765 8999999999999643 256778889999999998 999999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 311 a~~~~ 315 (332)
T 2wkq_A 311 ALTQR 315 (332)
T ss_dssp TTTCT
T ss_pred CCCCc
Confidence 99984
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=8.9e-30 Score=175.99 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=111.4
Q ss_pred CCCCCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCEEEEEEEeeCCCccccchhh--
Q 031201 5 PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTIT-- 81 (164)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~g~~~~~~~~-- 81 (164)
++....+....+||+++|.+|+|||||++++.+.- ..........+.......+ ++..+.+++||++|++.|....
T Consensus 10 ~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 88 (196)
T 3llu_A 10 GRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD 88 (196)
T ss_dssp ----------CCEEEEEESTTSSHHHHHHHHHSCC-CGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred CCCCCcccCcceEEEEECCCCCCHHHHHHHHHhcC-CCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence 34445677889999999999999999999888743 3222222222222222233 2556799999999999987766
Q ss_pred -hhhcccccEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CCccchHHHHHHHH---
Q 031201 82 -TAYYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES------KRAVPTSKGQALAD--- 149 (164)
Q Consensus 82 -~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~~~~~--- 149 (164)
..+++++|++|+|||++++ +++..+..|+..+..... +.|+++|+||+|+.+. .+.+..+++.++++
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 7899999999999999997 778888888887755444 8999999999998531 34455666788888
Q ss_pred -HhCCcEEEEeccC
Q 031201 150 -EYGIKFFETVMQR 162 (164)
Q Consensus 150 -~~~~~~~~~Sa~~ 162 (164)
..+++|++|||++
T Consensus 168 ~~~~~~~~e~Sa~~ 181 (196)
T 3llu_A 168 EKLHLSFYLTSIYD 181 (196)
T ss_dssp TTSCEEEEEECTTS
T ss_pred hcCCcceEEEEech
Confidence 7788999999997
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=2e-28 Score=167.57 Aligned_cols=144 Identities=21% Similarity=0.385 Sum_probs=115.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||++++.++. ...+.++.+. ....+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999988 6666777663 344555554 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-----HhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+. . ..++..+... ..++++++|||++|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA-L--SCNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-C--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-C--CHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 999999999999999988877654 2347999999999999742 1 2233333222 345689999999984
No 94
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=1.6e-29 Score=169.52 Aligned_cols=141 Identities=21% Similarity=0.410 Sum_probs=109.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEE
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (164)
+||+++|++|+|||||++++.++.+.. +.++.+. ....+..++ +.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887764 4555553 233444433 78999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHH-----HHHhCCcEEEEeccCCC
Q 031201 96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETVMQRQI 164 (164)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 164 (164)
|++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+. ++..++++++|||++|+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 999999999999888877553 33479999999999996421 12222221 12234579999999984
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.1e-29 Score=171.24 Aligned_cols=144 Identities=20% Similarity=0.338 Sum_probs=111.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+|+|.+|+|||||+++|.++.+. .+.++.+.+ ...+.+++ +.+.+||+||++.+..++..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999988776 555655533 34455555 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHH-----HhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..++++++|||++|+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 9999999999999999988886643 247999999999999632 22344444332 345689999999984
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.6e-29 Score=173.24 Aligned_cols=145 Identities=23% Similarity=0.413 Sum_probs=107.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|++|+|||||+++++++.+.. +.++.+ +....+..++ +.+.+||+||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 4567999999999999999999999887753 455555 3344455554 7899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHH-----HHHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 164 (164)
|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+. +...++++++|||++|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 99999999999999999888775532 3479999999999996421 11222211 12234579999999984
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=3.2e-31 Score=184.17 Aligned_cols=151 Identities=31% Similarity=0.623 Sum_probs=127.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|.+|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 36789999999999999999999999888777777665333 45566677788999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccchHHHHHHHHHhCC-cEEEE
Q 031201 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET 158 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (164)
|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+.+.. +.+..+++.++++..++ ++++|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999987 68888776655 78999999999996432 25566778889999998 99999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|+
T Consensus 185 SA~~g~ 190 (204)
T 3th5_A 185 SALTQR 190 (204)
Confidence 999984
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=1.7e-28 Score=167.65 Aligned_cols=145 Identities=21% Similarity=0.366 Sum_probs=113.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
+...+||+++|++|+|||||++++.+..+ ..+.++.+ +....+..++ +.+.+||+||++.+...+..+++++|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 36679999999999999999999998754 33455555 3345566664 7899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (164)
++|||++++++++.+..|+..+... ...+.|+++|+||+|+.+. . ..++..+.. ...++++++|||++|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA-A--PASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC-C--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC-C--CHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 9999999999999998888777543 2347899999999999743 2 122232221 2235689999999985
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=4.1e-28 Score=169.55 Aligned_cols=120 Identities=15% Similarity=0.279 Sum_probs=91.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCE-EEEEEEeeCCCccccch-hhhhhccccc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAM 89 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~d~~g~~~~~~-~~~~~~~~~~ 89 (164)
....+||+|+|++|+|||||+++|++..+...+.++. .++. .+.+++. .+.+.+||+||++.+.. ++..+++++|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3567899999999999999999999998877765443 3333 2555543 57899999999999887 7888999999
Q ss_pred EEEEEEECCChH-HHHHHHHHH-HHHHHh--cCCCCcEEEEEeCCCCCC
Q 031201 90 GILLVYDVTDES-SFNNIRNWI-RNIEQH--ASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~-~~~~~~--~~~~~p~ivv~nK~Dl~~ 134 (164)
++|+|||+++.. ++..+..++ ..+... ...+.|+++|+||+|+.+
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 999999999854 566666644 444332 234789999999999974
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=8.8e-29 Score=169.80 Aligned_cols=144 Identities=19% Similarity=0.349 Sum_probs=112.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||++++.++.+.. +.++.+. ....+..++ +.+.+||+||++.+...+..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999999877654 4455543 334455554 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHH-----HHHHhCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQA-----LADEYGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .++..+ .+...++++++|||++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhccCCceEEEEccCCCcc
Confidence 9999999999999988887775542 34799999999999974321 122222 223345689999999984
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-28 Score=167.06 Aligned_cols=144 Identities=21% Similarity=0.378 Sum_probs=110.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
...+||+++|++|+|||||++++.++.+ ..+.++.+. ....+.+++ +.+.+||+||.+.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998776 444555553 334455555 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH-----hCCcEEEEeccCCC
Q 031201 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~ 164 (164)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.... .++++++|||++|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 9999999999999999888876653 357999999999999632 223333333322 24589999999984
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.2e-29 Score=179.98 Aligned_cols=153 Identities=23% Similarity=0.328 Sum_probs=112.4
Q ss_pred CCCCCceeeEEEEcCC---------CCcHHHHHHHHhc---CCCCCccccee-eeEEEEEE--------------EEECC
Q 031201 9 RADYDCLIKLLLIGDS---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIRT--------------IELDG 61 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~---------~~GKssl~~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~ 61 (164)
.......+||+|+|.+ |+|||||+++|++ ..+...+.++. +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 4556778999999999 9999999999999 55666655554 32221111 12456
Q ss_pred EEEEEEEee-----------------------CCCccccchhhhhhcc---------------------cccEEEEEEEC
Q 031201 62 KRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVYDV 97 (164)
Q Consensus 62 ~~~~~~l~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~ 97 (164)
..+.+.||| ++|++.+..++..++. ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 778999999 5667777777777776 79999999999
Q ss_pred CCh--HHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH-hCCcEEEEeccCCC
Q 031201 98 TDE--SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETVMQRQI 164 (164)
Q Consensus 98 ~~~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~ 164 (164)
+++ ++|+.+..|+..+... ...++|+++|+||+|+. ..+.+ ++++++++. .+++|++|||++|+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG-VERYI--RDAHTFALSKKNLQVVETSARSNV 240 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB-CHHHH--HHHHHHHHTSSSCCEEECBTTTTB
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc-ccHHH--HHHHHHHHhcCCCeEEEEECCCCC
Confidence 998 9999999999888765 33479999999999996 33333 577888876 48899999999984
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=2.6e-27 Score=174.15 Aligned_cols=147 Identities=23% Similarity=0.379 Sum_probs=115.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCC--CC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCcccc-----chhhhhhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGS--FT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYY 85 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~-----~~~~~~~~ 85 (164)
..+||+++|.+|+|||||+++++++. +. ..+.+|.+.++. .+.+++ .+.+.+||+||++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 46899999999999999999998873 32 245555554444 444444 579999999999988 67888899
Q ss_pred ccccEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCC-CCc----cchHHHHHHHHHhC---CcE
Q 031201 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDES-KRA----VPTSKGQALADEYG---IKF 155 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~---~~~ 155 (164)
+++|++|+|||++++++++.+..|...+.... ..+.|+++|+||+|+.+. .+. ...+++.++++.++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877655543321 347999999999999731 343 55678899999997 799
Q ss_pred EEEeccCC
Q 031201 156 FETVMQRQ 163 (164)
Q Consensus 156 ~~~Sa~~g 163 (164)
+++||+++
T Consensus 159 ~~tSa~~~ 166 (307)
T 3r7w_A 159 FPTSIWDE 166 (307)
T ss_dssp EECCTTSS
T ss_pred EEeeecCC
Confidence 99999873
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=6.7e-27 Score=157.41 Aligned_cols=140 Identities=18% Similarity=0.224 Sum_probs=102.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc------hhhhhhcc--
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-- 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~------~~~~~~~~-- 86 (164)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+||+||+..+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999999776555445444444445556665 579999999988764 33355554
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+++++++|+|+++.++. ..|+..+... +.|+++|+||+|+.+ .+.+.. ++.++++..+++++++||++|+
T Consensus 81 ~~~~~i~v~D~~~~~~~---~~~~~~~~~~---~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 81 KPDLVVNIVDATALERN---LYLTLQLMEM---GANLLLALNKMDLAK-SLGIEI-DVDKLEKILGVKVVPLSAAKKM 150 (165)
T ss_dssp CCSEEEEEEETTCHHHH---HHHHHHHHHT---TCCEEEEEECHHHHH-HTTCCC-CHHHHHHHHTSCEEECBGGGTB
T ss_pred CCCEEEEEecCCchhHh---HHHHHHHHhc---CCCEEEEEEchHhcc-ccChhh-HHHHHHHHhCCCEEEEEcCCCC
Confidence 89999999999986543 3466655442 689999999999862 233332 3678888999999999999984
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=2.9e-26 Score=161.83 Aligned_cols=149 Identities=21% Similarity=0.166 Sum_probs=102.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc------cc---chhhh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE------RF---RTITT 82 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~------~~---~~~~~ 82 (164)
....++|+|+|.+|+|||||+++|++..+.....+..+.+.....+..++ ..+.|||+||.. .. ...+.
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 46789999999999999999999999877533323223333334444444 689999999983 21 11223
Q ss_pred hhcccccEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchH---HHHHHHHHhC--CcE
Q 031201 83 AYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS---KGQALADEYG--IKF 155 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~~ 155 (164)
.+...+|++|+|||++++.++. ....|+..+.... .+.|+++|+||+|+.+ .+.+..+ ...+++...+ +++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCN-MDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCC-chhhHHHHHHHHHHHHHhcCCCceE
Confidence 4567889999999999987764 2234555554432 2789999999999973 3444332 4677777777 899
Q ss_pred EEEeccCCC
Q 031201 156 FETVMQRQI 164 (164)
Q Consensus 156 ~~~Sa~~g~ 164 (164)
++|||++|+
T Consensus 182 ~~~SA~~g~ 190 (228)
T 2qu8_A 182 SSFSTLTGV 190 (228)
T ss_dssp EECCTTTCT
T ss_pred EEEecccCC
Confidence 999999985
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.1e-27 Score=174.60 Aligned_cols=145 Identities=20% Similarity=0.378 Sum_probs=105.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|.+|+|||||+++|.+..+.... +|.+..+ ..+...+ +.+.|||+||++.+..++..+++.+|++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 346789999999999999999999998875443 4554333 3444444 7899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (164)
|+|||++++++|..+..++..+... ...++|++||+||+|+.+... .++..... ...+++|+++||++|+
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 9999999999999998877666443 335799999999999974321 12222211 1234579999999984
No 107
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1e-27 Score=168.01 Aligned_cols=144 Identities=16% Similarity=0.245 Sum_probs=107.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC---cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ 87 (164)
.....++|+|+|++|+|||||+++|.+..+.. .+.++.+.++ ..+.+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 35678999999999999999999999987654 2333333221 33579999999999998888888877
Q ss_pred ----ccEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCccc------hHHHHHHHHHhC
Q 031201 88 ----AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDESKRAVP------TSKGQALADEYG 152 (164)
Q Consensus 88 ----~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~ 152 (164)
+|++|+|||++ +++++..+..|+..+... ...++|+++|+||+|+.+ ..... .+++..++...+
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT-ARPPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc-cCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999 888998888887777554 345899999999999973 33322 455778888888
Q ss_pred CcEEEEeccCCC
Q 031201 153 IKFFETVMQRQI 164 (164)
Q Consensus 153 ~~~~~~Sa~~g~ 164 (164)
++|+++||++|+
T Consensus 158 ~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 158 KSLNEVERKINE 169 (218)
T ss_dssp HHHHC-------
T ss_pred cccccccccccc
Confidence 999999999874
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.1e-27 Score=175.89 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=108.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCC---cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch---hhhhhcccccE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 90 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~---~~~~~~~~~~~ 90 (164)
||+++|..|+|||||++++.++.++. .+.+|.+.++.. + + ..+.++|||++|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999888764432 245666655542 2 2 347899999999999964 46889999999
Q ss_pred EEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccchHHHHHHHHH----hCCcEEEE
Q 031201 91 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------RAVPTSKGQALADE----YGIKFFET 158 (164)
Q Consensus 91 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~ 158 (164)
+|+|||++++ ++++.+..|+..+....+ ++|+++++||+|+.+.. +.+..++++++++. ++++|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 444445555555555544 79999999999997432 45677778888886 68899999
Q ss_pred eccCC
Q 031201 159 VMQRQ 163 (164)
Q Consensus 159 Sa~~g 163 (164)
||++.
T Consensus 155 SAkd~ 159 (331)
T 3r7w_B 155 SIFDH 159 (331)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 99863
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=5.5e-26 Score=154.08 Aligned_cols=141 Identities=20% Similarity=0.212 Sum_probs=106.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 90 (164)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++ ..+.+||+||++.+..++..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345788999999999999999999999888877666666556556667777 457899999999999999999999999
Q ss_pred EEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh-------C--CcEEEE
Q 031201 91 ILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFET 158 (164)
Q Consensus 91 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~ 158 (164)
+|+|||+++ +++++.+ ..+ ...+.|+++|+||+|+.+. ..++......+. + +++++|
T Consensus 82 ~i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKL 150 (178)
T ss_dssp EEEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEE
Confidence 999999988 4444333 222 2237899999999999742 122233322222 2 589999
Q ss_pred eccCCC
Q 031201 159 VMQRQI 164 (164)
Q Consensus 159 Sa~~g~ 164 (164)
||++|+
T Consensus 151 Sa~~~~ 156 (178)
T 2lkc_A 151 SAKTKE 156 (178)
T ss_dssp CSSSSH
T ss_pred ecCCCC
Confidence 999983
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=8.3e-26 Score=154.62 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=108.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc------hhhhhhcc-
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~------~~~~~~~~- 86 (164)
..++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ ..+.+||+||...+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 568999999999999999999999776555555555566666677766 689999999988764 34555554
Q ss_pred -cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+ .+.+. ++..++++..+++++++||++|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAK-SLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHH-HTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccc-cccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 5999999999876 4445556666654 3789999999999863 22232 35788889999999999999874
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=8.6e-26 Score=175.74 Aligned_cols=145 Identities=21% Similarity=0.406 Sum_probs=112.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (164)
....+||+|+|.+|+|||||+++|.+..+.. +.+|.+.++ ..+...+ +.+.|||++|++.+..++..+++++|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3567999999999999999999999988654 345555443 3444444 7899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccchHHHHHHH-----HHhCCcEEEEeccCCC
Q 031201 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETVMQRQI 164 (164)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (164)
|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.. ..++..+.. ...++++++|||++|+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM---KPHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC---CHHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC---CHHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 99999999999999999888775533 2579999999999997321 122222211 1223469999999984
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=1.7e-25 Score=160.77 Aligned_cols=142 Identities=17% Similarity=0.161 Sum_probs=107.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh------hhhhc-
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY- 85 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~------~~~~~- 85 (164)
...++|+++|.+|+|||||+|+|++..+.....+..+.+.....+..++ ..+.|||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4678999999999999999999999876655555555555555555555 68999999998876642 24455
Q ss_pred -ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 86 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 86 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
..+|++++|+|+++.++... |...+.. .+.|+++|+||+|+.+ .+.+.. +...+++.++++++++||++|+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~---~~~~l~~---~~~pvilv~NK~Dl~~-~~~i~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY---LLLEILE---MEKKVILAMTAIDEAK-KTGMKI-DRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH---HHHHHHT---TTCCEEEEEECHHHHH-HTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred hcCCCEEEEEeCCCchhhHHH---HHHHHHh---cCCCEEEEEECcCCCC-ccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence 58999999999998765432 4444433 2789999999999863 333333 3788899999999999999984
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=4.1e-26 Score=156.99 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=96.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC----------ccccchh
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~~ 80 (164)
+....++|+|+|++|+|||||+++|++..+...+.++.+.+........++ .+.+||+|| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 456789999999999999999999999876665555555444444444554 699999999 6677777
Q ss_pred hhhhcccc---cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc--hHHHHH-HHHHhCCc
Q 031201 81 TTAYYRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQA-LADEYGIK 154 (164)
Q Consensus 81 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~-~~~~~~~~ 154 (164)
+..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+ ..... .+++.+ +....+++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIP-KGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSC-GGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCC-hHHHHHHHHHHHHHHcccCCCc
Confidence 77777766 9999999999876665532 2222222 3789999999999973 22221 123333 33334679
Q ss_pred EEEEeccCCC
Q 031201 155 FFETVMQRQI 164 (164)
Q Consensus 155 ~~~~Sa~~g~ 164 (164)
++++||++|+
T Consensus 171 ~~~~Sa~~~~ 180 (195)
T 1svi_A 171 LILFSSETKK 180 (195)
T ss_dssp EEECCTTTCT
T ss_pred eEEEEccCCC
Confidence 9999999984
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=1e-25 Score=152.75 Aligned_cols=140 Identities=20% Similarity=0.213 Sum_probs=101.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh--------hhhh
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~~~ 84 (164)
...||+|+|++|+|||||+++|.+..+. ....+..+.++....+.+++ ..+.+||+||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987643 12223333445566677777 35899999997643211 1235
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+.... ++...++++++|||++|+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCC
Confidence 78999999999999988765 346777776666567999999999999632211 122356799999999985
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=3.2e-26 Score=179.61 Aligned_cols=149 Identities=22% Similarity=0.293 Sum_probs=112.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEE------EEE--CCEEEEEEEeeCCCccccchhhh
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT------IEL--DGKRIKLQIWDTAGQERFRTITT 82 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~d~~g~~~~~~~~~ 82 (164)
.....+||+++|.+|+|||||++++++..+...+.++.+.++.... +.+ ++..+.+.+||+||++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999999988888888887666442 112 23357899999999999999999
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
.+++.+|++|+|||+++. +.+..|+..+....+ +.|+++|+||+|+. ..+.+..+++++++...+++++++||++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDEN-PSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTC-TTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcc-cccccCHHHHHHHHHhcCCceEEEecCc
Confidence 999999999999999865 455668888877765 78999999999997 4566677888999999999999999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 192 g~ 193 (535)
T 3dpu_A 192 GD 193 (535)
T ss_dssp --
T ss_pred cc
Confidence 84
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=6.7e-26 Score=155.16 Aligned_cols=139 Identities=20% Similarity=0.271 Sum_probs=104.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC-----------ccccchhhhhh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY 84 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g-----------~~~~~~~~~~~ 84 (164)
+||+++|++|+|||||+++|.+..+...+.++.+... ..+..+ .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999988776666554322 233333 689999999 56677777778
Q ss_pred ccc-ccEEEEEEECCChHHHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC
Q 031201 85 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (164)
Q Consensus 85 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (164)
++. ++.+++||++.+..++..+ ..|... + ......+.|+++|+||+|+.+.. .+++.++++..++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence 777 7877777777777787776 445542 2 22223478999999999997332 5668888888887
Q ss_pred c-------EEEEeccCCC
Q 031201 154 K-------FFETVMQRQI 164 (164)
Q Consensus 154 ~-------~~~~Sa~~g~ 164 (164)
+ +++|||++|+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~ 169 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGD 169 (190)
T ss_dssp CGGGHHHHEEECCTTTCT
T ss_pred hhhccCCcEEEEecCCCC
Confidence 5 7999999985
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2e-25 Score=160.23 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=107.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch----------hhhhhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY 85 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~----------~~~~~~ 85 (164)
.+|+++|.+|+|||||+|+|++........++.+.+.....+..++ ..+.|||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999876665666666667777777777 3899999999876653 445566
Q ss_pred --ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 86 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 86 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
.++|++|+|+|+++.+++..+..++. ..+.|+++|+||+|+.+ .+.... ....+.+..+++++++||++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~-~~~~~~-~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAE-HRGISI-DTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHH-HTTCEE-CHHHHHHHHCSCEEECBGGGT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCC-cCCcHH-HHHHHHHHcCCCEEEEECCCC
Confidence 88999999999998766655444333 22789999999999863 222222 256688889999999999988
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 152 ~ 152 (256)
T 3iby_A 152 I 152 (256)
T ss_dssp B
T ss_pred C
Confidence 4
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=7.8e-25 Score=146.02 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=93.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc-------cchhhhhhccc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG 87 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-------~~~~~~~~~~~ 87 (164)
.||+++|++|+|||||++++.+..+. ....+..+.+.....+..++. .+.+||+||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999997753 222333333445555666663 789999999876 34455667899
Q ss_pred ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
+|++++|+|++++.+... ..+.+.+.. .+.|+++|+||+|+.+. .+++.+++ +.++ +++++||++|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHAR 147 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTB
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCC
Confidence 999999999998533221 112222222 26899999999999743 13344555 6777 89999999984
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=4.6e-25 Score=151.45 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=102.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC----------ccccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFR 78 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~ 78 (164)
..+....+||+|+|++|+|||||+++|++..+. ...++.+.+........+. .+.+||+|| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence 345567889999999999999999999998733 2233333333333333344 688999999 56677
Q ss_pred hhhhhhcccc---cEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccchHHHHHHHHHhC
Q 031201 79 TITTAYYRGA---MGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYG 152 (164)
Q Consensus 79 ~~~~~~~~~~---~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 152 (164)
.++..+++.+ +++++|+|.++.. ....+..|+... +.|+++|+||+|+.+. ......+++.+++...+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 7777777665 9999999988753 333444444433 6899999999999632 23444566677777644
Q ss_pred -CcEEEEeccCCC
Q 031201 153 -IKFFETVMQRQI 164 (164)
Q Consensus 153 -~~~~~~Sa~~g~ 164 (164)
+++++|||++|+
T Consensus 167 ~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 167 EYTIIPTSSVTGE 179 (195)
T ss_dssp CSCEEECCTTTCT
T ss_pred CCceEEEecCCCC
Confidence 699999999985
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=7.6e-25 Score=158.68 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=105.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch----------hhhhh
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAY 84 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~----------~~~~~ 84 (164)
.++|+++|.+|+|||||+|+|++..+.....++.+.+.....+..++ ..+.+||+||...+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999876655566666666666666655 4688999999877652 22233
Q ss_pred c--ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 85 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
+ ..+|++|+|+|+++.++...+..++... +.|+++|+||+|+.+ .+... .....+++..+++++++||++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~-~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAE-KQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHH-HTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchh-hhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 3 6899999999999876655544444433 789999999999863 22222 235778888999999999998
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 153 g~ 154 (274)
T 3i8s_A 153 GR 154 (274)
T ss_dssp GH
T ss_pred CC
Confidence 73
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3.4e-25 Score=160.22 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=102.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc------hhhhhhcc-
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~------~~~~~~~~- 86 (164)
..++|+++|++|+|||||+|+|++........+..+ .......++. ...+.+||+||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~t--v~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVT--VERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCC--CSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCc--EEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 458999999999999999999999764443334333 3233344454 5689999999988775 34555665
Q ss_pred -cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|++|+|+|+++.++.. .|...+.. .+.|+++|+||+|+.+ .+.+. .+...+++.++++++++||++|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~~---~~~~~l~~---~~~p~ilv~NK~Dl~~-~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 149 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL---YLTTQLIE---TGIPVTIALNMIDVLD-GQGKK-INVDKLSYHLGVPVVATSALKQT 149 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH---HHHHHHHH---TCSCEEEEEECHHHHH-HTTCC-CCHHHHHHHHTSCEEECBTTTTB
T ss_pred CCCCEEEEEecCCchHhHH---HHHHHHHh---cCCCEEEEEEChhhCC-cCCcH-HHHHHHHHHcCCCEEEEEccCCC
Confidence 699999999999876543 34444443 3789999999999862 23333 34678889999999999999984
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=3.8e-24 Score=157.40 Aligned_cols=151 Identities=15% Similarity=0.052 Sum_probs=110.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc---------
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------- 78 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--------- 78 (164)
..+....-.|+++|.+|+|||||+|+|++..+... ..+..+..........+ ...++.||||||.....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence 35567788999999999999999999999876532 22222222222233333 13689999999986543
Q ss_pred -hhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC--CcE
Q 031201 79 -TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKF 155 (164)
Q Consensus 79 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~ 155 (164)
.....++.++|++++|+|+++..++.....|++.+... +.|+++|+||+|+. .......+....+.+..+ .++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKI-GPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGS-SSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCC-CCHHHHHHHHHHHHHhccCCCeE
Confidence 45667788999999999999987777776677777653 68999999999996 244455666778888875 689
Q ss_pred EEEeccCCC
Q 031201 156 FETVMQRQI 164 (164)
Q Consensus 156 ~~~Sa~~g~ 164 (164)
+++||++|+
T Consensus 159 ~~vSA~~g~ 167 (308)
T 3iev_A 159 VPISALKGA 167 (308)
T ss_dssp EECBTTTTB
T ss_pred EEEeCCCCC
Confidence 999999884
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=3.3e-24 Score=155.10 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=107.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch------hhhhhc--c
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~------~~~~~~--~ 86 (164)
.++|+++|++|+|||||+|+|++..+.....++.+.+.....+..++ ..+.+||+||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 58999999999999999999999877666666666677667777776 4599999999887665 455555 6
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++|++++|+|+++.+. ...+...+.... ..|+++|+||+|+.+ .+....+ ...+.+..+++++++||++|+
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~-~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLK-KKGAKID-IKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHH-HHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCc-ccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence 8999999999998643 223333333331 289999999999862 2223222 778888999999999999874
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=1.7e-23 Score=146.88 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=94.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CEEEEEEEeeCCCc----------cccch
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQ----------ERFRT 79 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~d~~g~----------~~~~~ 79 (164)
+....++|+|+|.+|+|||||+++|++..+........+.+......... .....+.|||+||. +.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34567899999999999999999999986322212222222222222333 23357999999993 34455
Q ss_pred hhhhhccc---ccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc--chHHHHHHHHH----
Q 031201 80 ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV--PTSKGQALADE---- 150 (164)
Q Consensus 80 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~---- 150 (164)
+...++.. +|++++|+|+++..+. ....++..+.. .+.|+++|+||+|+.+ .... ..++..+....
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLT-RQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCC-hhhHHHHHHHHHHHHHhhhhc
Confidence 55666665 7889999999874331 12234444443 3689999999999963 2211 12222333333
Q ss_pred ---hCCcEEEEeccCCC
Q 031201 151 ---YGIKFFETVMQRQI 164 (164)
Q Consensus 151 ---~~~~~~~~Sa~~g~ 164 (164)
.+++++++||++|+
T Consensus 180 ~~~~~~~~~~~SA~~g~ 196 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRT 196 (223)
T ss_dssp TCCSCEEEEEEBTTTTB
T ss_pred ccCCCCeEEEeecCCCc
Confidence 45699999999984
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=8.1e-23 Score=156.74 Aligned_cols=146 Identities=17% Similarity=0.110 Sum_probs=100.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCc----------cccchh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI 80 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~----------~~~~~~ 80 (164)
.+..+||+++|.+|+|||||+|+|++..+. ....+..+.+.....+..++. .+.||||||+ +.|..+
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHH
Confidence 346799999999999999999999997753 233344444444556666764 5899999997 444444
Q ss_pred hh-hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH-----HHHHHhCCc
Q 031201 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-----ALADEYGIK 154 (164)
Q Consensus 81 ~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~ 154 (164)
.. .+++.+|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+.+ ......++.. .+....+++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVD-KDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSC-CCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCC-cchHHHHHHHHHHHHhcccCCCCC
Confidence 33 477889999999999998777665 45555543 3789999999999973 3333323332 222234679
Q ss_pred EEEEeccCCC
Q 031201 155 FFETVMQRQI 164 (164)
Q Consensus 155 ~~~~Sa~~g~ 164 (164)
++++||++|+
T Consensus 325 ~~~~SA~tg~ 334 (436)
T 2hjg_A 325 ILFMSALTKK 334 (436)
T ss_dssp EEECCTTTCT
T ss_pred EEEEecccCC
Confidence 9999999985
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=1.1e-22 Score=157.01 Aligned_cols=143 Identities=19% Similarity=0.124 Sum_probs=86.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhh--------hhh
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~--------~~~ 84 (164)
..++|+|+|.+|+|||||+|+|++... .....+..+.+.....+.+++ +.+.||||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 457899999999999999999999753 233334444455556677777 679999999987665433 346
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++++|++++|+|++++.+++++..+...+... . +.|+++|+||+|+.+. ... ..+++.+....+++++||++|+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~-~~~---~~~~l~~~~~~~~i~vSAktg~ 383 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAAN-ADA---LIRAIADGTGTEVIGISALNGD 383 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTT-THH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCc-cch---hHHHHHhcCCCceEEEEECCCC
Confidence 78999999999999987775433333333222 2 6899999999999732 222 1234544434799999999984
No 127
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.3e-23 Score=140.27 Aligned_cols=114 Identities=16% Similarity=0.272 Sum_probs=87.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc---ccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhccc-
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~- 87 (164)
....++|+|+|++|+|||||+++|.+..+... ..++.+ .+...+.+.+||+||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 46778999999999999999999999876441 122211 11133579999999999888877777766
Q ss_pred ---ccEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 031201 88 ---AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 88 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~ 134 (164)
+|++|+|||++ +++++..+..|+..+... ...+.|+++|+||+|+.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 899999998887776543 335799999999999973
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.88 E-value=8.6e-22 Score=147.53 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=105.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccc---------hhhhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTA 83 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~---------~~~~~ 83 (164)
...++|+++|++|+|||||+++|.+........+..+.+.....+..++ ..+.+||+||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 5678999999999999999999998764322222222223333344443 579999999964321 11223
Q ss_pred hcccccEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEecc
Q 031201 84 YYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQ 161 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (164)
+...+|.+++|+|++++. +++....|+..+..... +.|+++|+||+|+.+ ... .+++.+++...+++++++||+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~-~~~--~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD-EEN--IKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC-HHH--HHHHHHHHHHTTCCCEECBTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC-hHH--HHHHHHHHHhcCCCeEEEeCC
Confidence 445799999999999877 67777788888877655 789999999999963 222 255677777888999999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 319 ~g~ 321 (357)
T 2e87_A 319 KGT 321 (357)
T ss_dssp TTB
T ss_pred CCc
Confidence 985
No 129
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=4.6e-22 Score=152.58 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=101.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCcccceeeeEEEEEEEE
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIE 58 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (164)
.+....++|+++|.+++|||||+++|+... ......+..+++.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 345678999999999999999999995531 1111223334444444444
Q ss_pred ECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031201 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE 134 (164)
Q Consensus 59 ~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (164)
.+ ...+.|||+||++.|.......+..+|++|+|+|+++.. +|+...++.+.+......++| +++++||+|+.+
T Consensus 92 ~~--~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TE--KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred cC--CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 44 368999999999999998888999999999999998742 122111122222111122566 899999999953
Q ss_pred CC-----CccchHHHHHHHHHhC------CcEEEEeccCCC
Q 031201 135 SK-----RAVPTSKGQALADEYG------IKFFETVMQRQI 164 (164)
Q Consensus 135 ~~-----~~~~~~~~~~~~~~~~------~~~~~~Sa~~g~ 164 (164)
.. .....++...+.+..+ ++++++||++|+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ 210 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA 210 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCc
Confidence 21 1122344555665554 479999999985
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=2.2e-23 Score=158.63 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=101.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh-------hh
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TT 82 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-------~~ 82 (164)
+....++|+|+|..|+|||||+++|++..+. ....+..+.+.....+...+.. .+.||||||+..+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 4567899999999999999999999998763 2333333444455556665543 7999999998876554 34
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
.++..+|++|+|+|++..+. ...|+..+... +.|+++|+||+|+.+... . +...++++..+++++++||++
T Consensus 109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~-~--~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKA-E--ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCC-T--HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccH-H--HHHHHHHHHcCCCEEEEECCC
Confidence 57889999999999943333 34466666554 789999999999974332 2 667788888899999999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 180 g~ 181 (423)
T 3qq5_A 180 KK 181 (423)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 131
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=5.6e-22 Score=145.30 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=93.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCEEEEEEEeeCCCccc--------cchhhhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA 83 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--------~~~~~~~ 83 (164)
-+..+|+|+|.+|+|||||+|+|++..+... ..+..+.+.....+..+ ..++.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 3456899999999999999999999876432 22211111111122333 36899999999765 3445567
Q ss_pred hcccccEEEEEEECCChHHHHHHHHH-HHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC-CcEEEEecc
Q 031201 84 YYRGAMGILLVYDVTDESSFNNIRNW-IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETVMQ 161 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (164)
+++++|++++|+|++++.+.. ..| ++.+.... .+.|+++|+||+|+.+. .....+.+.++ .+ .+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~-~~~~~~~~~~~---~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKY-PEEAMKAYHEL---LPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSS-HHHHHHHHHHT---STTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCc-hHHHHHHHHHh---cCcCcEEEEeCC
Confidence 789999999999998764432 233 34454443 36899999999999632 11012222222 23 479999999
Q ss_pred CC
Q 031201 162 RQ 163 (164)
Q Consensus 162 ~g 163 (164)
+|
T Consensus 156 ~g 157 (301)
T 1wf3_A 156 DE 157 (301)
T ss_dssp CH
T ss_pred CC
Confidence 86
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=2.8e-22 Score=154.49 Aligned_cols=147 Identities=17% Similarity=0.107 Sum_probs=103.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCEEEEEEEeeCCC----------ccccch
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRT 79 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g----------~~~~~~ 79 (164)
.....+||+++|.+|+|||||+++|++... .....++.+.+.....+..++. .+.|||||| ++.+..
T Consensus 191 ~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 191 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred cccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHH
Confidence 345689999999999999999999997652 2223333333333345566664 789999999 566666
Q ss_pred hhhh-hcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh-----CC
Q 031201 80 ITTA-YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GI 153 (164)
Q Consensus 80 ~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~ 153 (164)
+... +++.+|++|+|+|+++.-+. ....|...+.. .+.|+++|+||+|+. ..+....++..+.+++. ++
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAV-DKDESTMKEFEENIRDHFQFLDYA 343 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGS-CCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcC-CCchHHHHHHHHHHHHhcccCCCC
Confidence 5553 67899999999999874332 22234444443 368999999999997 44555566667766665 57
Q ss_pred cEEEEeccCCC
Q 031201 154 KFFETVMQRQI 164 (164)
Q Consensus 154 ~~~~~Sa~~g~ 164 (164)
+++++||++|+
T Consensus 344 ~~~~~SA~~g~ 354 (456)
T 4dcu_A 344 PILFMSALTKK 354 (456)
T ss_dssp CEEECCTTTCT
T ss_pred CEEEEcCCCCc
Confidence 99999999985
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=4.1e-22 Score=154.33 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=99.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC-------CCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~ 85 (164)
-..++|+++|..++|||||+++|++.. ......+..+++.....+..++ ..+.|||+||++.|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999999876 2233333333333333445555 6899999999999988888899
Q ss_pred ccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccchHHHHHHHHHh----CCcEEE
Q 031201 86 RGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEY----GIKFFE 157 (164)
Q Consensus 86 ~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~----~~~~~~ 157 (164)
..+|++|+|+|+++ +++.+.+. .+.. .++|+++++||+|+.+.. .....++..++.+.. ++++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999987 55554443 2222 267889999999997321 122344566666655 579999
Q ss_pred EeccCCC
Q 031201 158 TVMQRQI 164 (164)
Q Consensus 158 ~Sa~~g~ 164 (164)
+||++|+
T Consensus 168 vSA~~g~ 174 (482)
T 1wb1_A 168 ISAKTGF 174 (482)
T ss_dssp CCTTTCT
T ss_pred EECcCCC
Confidence 9999985
No 134
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=5.1e-22 Score=154.02 Aligned_cols=147 Identities=14% Similarity=0.073 Sum_probs=94.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC--CCC-----------------------------cccceeeeEEEEEEEEECC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-----------------------------SFITTIGIDFKIRTIELDG 61 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (164)
...+||+++|.+++|||||+++|++.. +.. ...+..+++.. ...++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~--~~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSIC--TSHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCC--EEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEee--eEEEec
Confidence 467999999999999999999997641 111 11111122222 222333
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
..+.+.|||+||++.|......++..+|++|+|+|+++..++.. ....+..+... . ..|+++|+||+|+.+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~~- 185 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVD- 185 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGGT-
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCccc-
Confidence 34689999999999999999999999999999999998654322 22222222222 2 356999999999973
Q ss_pred CCccchHH----HHHHHHHh-----CCcEEEEeccCCC
Q 031201 136 KRAVPTSK----GQALADEY-----GIKFFETVMQRQI 164 (164)
Q Consensus 136 ~~~~~~~~----~~~~~~~~-----~~~~~~~Sa~~g~ 164 (164)
..+...++ ...+.+.. +++++++||++|+
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~ 223 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGE 223 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCT
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCC
Confidence 33333333 33343333 4589999999985
No 135
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=6.3e-22 Score=147.63 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=87.6
Q ss_pred EEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCC----------hHHHHHHHHHHHHHHHhc-CCCCc
Q 031201 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVN 122 (164)
Q Consensus 54 ~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p 122 (164)
...+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ .+++.+...|++.+.... ..++|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34455554 789999999999999999999999999999999999 567888888888876542 25799
Q ss_pred EEEEEeCCCCCCCC--------------CccchHHHHHHHH-----------HhCCcEEEEeccCC
Q 031201 123 KVLVGNKADMDESK--------------RAVPTSKGQALAD-----------EYGIKFFETVMQRQ 163 (164)
Q Consensus 123 ~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~g 163 (164)
++|++||+|+.+.. ..+..+++.+++. ..++.+++|||++|
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 99999999985221 1356788888887 35678999999987
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=1.1e-22 Score=151.14 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=102.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCccc--ceeeeEEEEEEEEECCEEEEEEEeeCCCccc----cchhhhhhc---c
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---R 86 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~~~~~~---~ 86 (164)
.+|+|+|.+++|||||+++|++........ .|...+ ...+.+++. ..+.|||+||... +..+...++ .
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 478999999999999999999865332111 222222 223444432 3799999999532 333444444 4
Q ss_pred cccEEEEEEECCC---hHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC--CcEEEEe
Q 031201 87 GAMGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETV 159 (164)
Q Consensus 87 ~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~S 159 (164)
.++++|+|+|+++ +++++.+..|...+..+.+ .+.|+++|+||+|+.+. .+..+++.+..+ .+++++|
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCS
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEE
Confidence 5999999999998 7899999999999987653 47999999999999631 134566777766 6899999
Q ss_pred ccCCC
Q 031201 160 MQRQI 164 (164)
Q Consensus 160 a~~g~ 164 (164)
|++|+
T Consensus 311 A~tg~ 315 (342)
T 1lnz_A 311 AVTRE 315 (342)
T ss_dssp SCCSS
T ss_pred CCCCc
Confidence 99874
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=8.5e-22 Score=152.23 Aligned_cols=138 Identities=22% Similarity=0.226 Sum_probs=99.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc-ccch--------hhhhh
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRT--------ITTAY 84 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~-~~~~--------~~~~~ 84 (164)
.++|+|+|.+|+|||||+|+|++..+. ....+..+.+.....+.+++ ..+.||||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999997542 22233334445556666776 568999999987 5542 23457
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
++.+|++|+|+|++++.+++... +++.+ .+.|+++|+||+|+.+. ...++..++.. .+++++++||++|+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGE 390 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence 88999999999999887765532 33332 26899999999999632 33344544432 34799999999985
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1.6e-20 Score=142.93 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=95.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC---CCCcccc--eeeeEEEEEEEEE-------------C--C----EEEEEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIKLQ 67 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 67 (164)
++..++|+++|..++|||||+++|++.. +.....+ |....+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998642 3333334 3333333333221 1 1 236899
Q ss_pred EeeCCCccccchhhhhhcccccEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccchH
Q 031201 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTS 142 (164)
Q Consensus 68 l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~ 142 (164)
|||+||++.|.......+..+|++|+|+|+++ +++++.+..+ ... . ..|+++++||+|+.+... ....+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-G-IDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-T-CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-C-CCeEEEEEEccCCCCHHHHHHHHH
Confidence 99999999988877778889999999999984 4555554432 222 1 357999999999975333 23456
Q ss_pred HHHHHHHH---hCCcEEEEeccCCC
Q 031201 143 KGQALADE---YGIKFFETVMQRQI 164 (164)
Q Consensus 143 ~~~~~~~~---~~~~~~~~Sa~~g~ 164 (164)
+++++.+. .+++++++||++|+
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~ 183 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEA 183 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCC
Confidence 67777765 36799999999884
No 139
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=3.3e-22 Score=153.30 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=100.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCCcc-----------------------------cceeeeEEEEEEEEECC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSF-----------------------------ITTIGIDFKIRTIELDG 61 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 61 (164)
...++|+++|..++|||||+++|+.. .+.... .+..+++..... ++.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~--~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMR--FET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CE--EEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEE--Eec
Confidence 46799999999999999999999874 332111 112222222222 333
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHh----cCCC-CcEEEEEeCCCCCCCC
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH----ASDN-VNKVLVGNKADMDESK 136 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~-~p~ivv~nK~Dl~~~~ 136 (164)
..+.+.|||+||+..|...+..++..+|++|+|+|+++ .+|+....|..+...+ ...+ .|+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 34689999999999999988899999999999999998 6776443322111111 1113 4689999999997421
Q ss_pred C-----ccchHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 137 R-----AVPTSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 137 ~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
. ....+++.++.+..+ ++++++||++|+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~ 198 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD 198 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCc
Confidence 1 223456777777776 689999999884
No 140
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=4.6e-21 Score=143.67 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=96.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc---------ccchhhhhhccc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYYRG 87 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~---------~~~~~~~~~~~~ 87 (164)
.|+++|++|+|||||+|+|++..+.....+..+.+.....+.+++ ..+.+||++|.. .+...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999999776433333333344556677777 468999999962 222322 24678
Q ss_pred ccEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHh---CCcEEEEeccC
Q 031201 88 AMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---GIKFFETVMQR 162 (164)
Q Consensus 88 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~ 162 (164)
+|++++|+|++++. ..+.+..|.+.+......+.|+++|+||+|+.........+.+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 56666667666666554578999999999986322111122344444555 34789999999
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|+
T Consensus 338 g~ 339 (364)
T 2qtf_A 338 RT 339 (364)
T ss_dssp TB
T ss_pred Cc
Confidence 84
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=1.5e-20 Score=142.87 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=103.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEE-------EEEE------------CCEEEEEEEeeC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR-------TIEL------------DGKRIKLQIWDT 71 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~------------~~~~~~~~l~d~ 71 (164)
.....++|+++|.+++|||||+++|++........... .+.... .+.. ......+.|||+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 45678999999999999999999999865433211100 000000 0000 122368999999
Q ss_pred CCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccchHHHHHHHHH
Q 031201 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADE 150 (164)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 150 (164)
||++.|.......+..+|++|+|+|+++..++.....++..+.... ..|+++++||+|+.+... ....++..++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998766666667766665543 258999999999973221 1122333344333
Q ss_pred h---CCcEEEEeccCCC
Q 031201 151 Y---GIKFFETVMQRQI 164 (164)
Q Consensus 151 ~---~~~~~~~Sa~~g~ 164 (164)
. +++++++||++|+
T Consensus 161 ~~~~~~~ii~vSA~~g~ 177 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKI 177 (403)
T ss_dssp STTTTCCEEECBTTTTB
T ss_pred hCCCCCEEEEEECCCCc
Confidence 2 5689999999984
No 142
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2.4e-20 Score=132.44 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=96.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccc--eeeeEEEEEEEEECCEEEEEEEeeCCCc-----------ccc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQ-----------ERF 77 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~d~~g~-----------~~~ 77 (164)
.....+||+|+|.+|+|||||+|+|++..+.....+ +.+.+.....+..++ ..+.|||+||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 446789999999999999999999999887665544 333344445556666 47899999993 234
Q ss_pred chhhhhhcccccEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc------hHHHHHHHH
Q 031201 78 RTITTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP------TSKGQALAD 149 (164)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~ 149 (164)
......+..++|++|+|+|+++... ...+..+.+.+... ...|+++|+||+|+.+. ..+. .+..+++.+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~-~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGD-TNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCc-ccHHHHHHhchHHHHHHHH
Confidence 4445556678899999999876332 33333333333222 13589999999998632 2221 346788888
Q ss_pred HhCCcEEEEeccC
Q 031201 150 EYGIKFFETVMQR 162 (164)
Q Consensus 150 ~~~~~~~~~Sa~~ 162 (164)
..+..|+..+.+.
T Consensus 180 ~~~~~~~~~~~~~ 192 (239)
T 3lxx_A 180 IFGDRYCALNNKA 192 (239)
T ss_dssp HHSSSEEECCTTC
T ss_pred HcCCEEEEEECCC
Confidence 8888888777653
No 143
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.6e-22 Score=150.47 Aligned_cols=147 Identities=24% Similarity=0.334 Sum_probs=83.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCccc--------ceeeeEEEEEEEEECCEEEEEEEeeCCCc-------cc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER 76 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~d~~g~-------~~ 76 (164)
...++|+|+|++|+|||||+++|++... ...+. ++.+.+.....+..++..+.+.+||+||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999876543 22221 34444443344445666778999999998 55
Q ss_pred cchhhh-------hhcccccE-----------EEEEEECCC-hHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 77 FRTITT-------AYYRGAMG-----------ILLVYDVTD-ESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 77 ~~~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
+..+.. .++...+. .+++|++.+ ..++..+.. +++.+ ..++|+++|+||+|+. ..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~-~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTL-TL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSS-CH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCC-CH
Confidence 666554 44443332 235555544 344444442 44333 3478999999999997 33
Q ss_pred Cccch--HHHHHHHHHhCCcEEEEeccCCC
Q 031201 137 RAVPT--SKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+.+.. +++.++++.+++++|++||++|+
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~ 219 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESD 219 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC-----
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCC
Confidence 33332 56778888889999999999873
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=5.3e-21 Score=150.99 Aligned_cols=145 Identities=22% Similarity=0.298 Sum_probs=97.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC--CCC-----cc------cceeeeEEEEEE--EEE---CCEEEEEEEeeCCCc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-----SF------ITTIGIDFKIRT--IEL---DGKRIKLQIWDTAGQ 74 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~l~d~~g~ 74 (164)
++..+|+|+|+.++|||||+++|+... +.. .. ....++++.... +.+ ++..+.++||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 457899999999999999999998632 110 00 011222332222 222 566789999999999
Q ss_pred cccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-
Q 031201 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI- 153 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (164)
..|...+...+..+|++|+|+|+++..+.+....|..... .++|+++++||+|+.+.. ..+...++.+..++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGID 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCC
Confidence 9999999999999999999999998666666655655443 268999999999997432 22334566666676
Q ss_pred --cEEEEeccCCC
Q 031201 154 --KFFETVMQRQI 164 (164)
Q Consensus 154 --~~~~~Sa~~g~ 164 (164)
+++++||++|+
T Consensus 155 ~~~vi~vSAktg~ 167 (599)
T 3cb4_D 155 ATDAVRCSAKTGV 167 (599)
T ss_dssp CTTCEEECTTTCT
T ss_pred cceEEEeecccCC
Confidence 49999999984
No 145
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=6.9e-21 Score=145.95 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=99.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC--CCcc----------cc---------------------eeeeEEEEEEEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF--TTSF----------IT---------------------TIGIDFKIRTIE 58 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~----------~~---------------------~~~~~~~~~~~~ 58 (164)
....+||+++|..++|||||+++|++... .... .. ..+++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 45679999999999999999999986431 1100 01 111111112222
Q ss_pred ECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 031201 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (164)
Q Consensus 59 ~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (164)
. ....+.|||+||++.|...+..++..+|++|+|+|+++... .....++..+... . ..|+++|+||+|+.+....
T Consensus 101 ~--~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 101 T--AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp C--SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHH
T ss_pred c--CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHH
Confidence 2 33679999999999998888888999999999999987432 1223343333332 1 2369999999999742211
Q ss_pred ---cchHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 139 ---VPTSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
...++..++.+..+ ++++++||++|+
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~ 209 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGD 209 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCC
Confidence 13455677777777 689999999984
No 146
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=5.4e-22 Score=153.21 Aligned_cols=151 Identities=15% Similarity=0.060 Sum_probs=88.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CCCCc-----------------------------ccceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 60 (164)
....++|+++|..++|||||+++|+.. .+... .....+++.....+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 356789999999999999999999752 22100 01111222222233334
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK 136 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 136 (164)
+ ..+.|||+||++.|.......+..+|++|+|+|+++. ++|+...++.+.+......++| +++++||+|+.+..
T Consensus 120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 3 6799999999999998888889999999999999875 3343222233333222223566 99999999996322
Q ss_pred C-----ccchHHHHHHHHHh-------CCcEEEEeccCCC
Q 031201 137 R-----AVPTSKGQALADEY-------GIKFFETVMQRQI 164 (164)
Q Consensus 137 ~-----~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~ 164 (164)
. ....++..++.+.. +++++++||++|+
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence 1 12334567777766 4579999999984
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=4.7e-21 Score=136.86 Aligned_cols=151 Identities=14% Similarity=0.060 Sum_probs=91.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCccccee--eeEEEEEEEEECCEEEEEEEeeCCCc--------cccc
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTI--GIDFKIRTIELDGKRIKLQIWDTAGQ--------ERFR 78 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~g~--------~~~~ 78 (164)
.......+||+|+|.+|+|||||+|+|++........+.. +.......+..++ ..+.||||||. +.+.
T Consensus 15 ~~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ 92 (247)
T 3lxw_A 15 YFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGC 92 (247)
T ss_dssp -----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTS
T ss_pred cccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHH
Confidence 3455778999999999999999999999987655433332 2222334445555 57999999995 2222
Q ss_pred hhhhhh----cccccEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----chHHHHHHH
Q 031201 79 TITTAY----YRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-----PTSKGQALA 148 (164)
Q Consensus 79 ~~~~~~----~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~ 148 (164)
.....+ ..++|++|+|+|+++... ...+..++..+......+.|++|++||.|+.+..... ..+..+.+.
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 222222 389999999999985321 1222233333322111268999999999996422111 124467888
Q ss_pred HHhCCcEEEEecc
Q 031201 149 DEYGIKFFETVMQ 161 (164)
Q Consensus 149 ~~~~~~~~~~Sa~ 161 (164)
+..+..|+..+++
T Consensus 173 ~~~g~~~~~~~~~ 185 (247)
T 3lxw_A 173 AECGGRVCAFDNR 185 (247)
T ss_dssp HHTTTCEEECCTT
T ss_pred HHcCCeEEEEeCC
Confidence 8888877766654
No 148
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=8.6e-21 Score=144.48 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=102.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCC---CCCcccc--eeeeEEEEEEEEE-------------C--C----EEE
Q 031201 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFIT--TIGIDFKIRTIEL-------------D--G----KRI 64 (164)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~ 64 (164)
+..++..++|+++|+.++|||||+++|++.. +.....+ |....+....+.. + + ...
T Consensus 4 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 83 (410)
T 1kk1_A 4 RKSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR 83 (410)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred cccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence 3456788999999999999999999999542 3333334 3333333333221 1 1 136
Q ss_pred EEEEeeCCCccccchhhhhhcccccEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-cc
Q 031201 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AV 139 (164)
Q Consensus 65 ~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~ 139 (164)
.+.|||+||++.|.......+..+|++|+|+|+++ +++.+.+..+ ... . ..|+++++||+|+.+... ..
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~-~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-G-QKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-T-CCCEEEEEECGGGSCHHHHHH
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-C-CCcEEEEEECccCCCHHHHHH
Confidence 89999999999988877777889999999999984 4555554332 222 1 357999999999974221 12
Q ss_pred chHHHHHHHHH---hCCcEEEEeccCCC
Q 031201 140 PTSKGQALADE---YGIKFFETVMQRQI 164 (164)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~~Sa~~g~ 164 (164)
..++++++.+. .+++++++||++|+
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~ 185 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGA 185 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTB
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCC
Confidence 34455666654 46799999999884
No 149
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=5.2e-21 Score=141.01 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=85.4
Q ss_pred EEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCC
Q 031201 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNV 121 (164)
Q Consensus 53 ~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~ 121 (164)
....+..++ +.+++||++|++.++..|..++++++++|+|||++ +.+++.+...|++.+.... ..+.
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 344455554 78999999999999999999999999999999665 6678888888887775533 3579
Q ss_pred cEEEEEeCCCCCCCC---------------CccchHHHHHHH----------HHhCCcEEEEeccCC
Q 031201 122 NKVLVGNKADMDESK---------------RAVPTSKGQALA----------DEYGIKFFETVMQRQ 163 (164)
Q Consensus 122 p~ivv~nK~Dl~~~~---------------~~~~~~~~~~~~----------~~~~~~~~~~Sa~~g 163 (164)
|++|++||+|+.+.. .....+++.+++ ...++.++++||+++
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~ 302 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence 999999999985321 145677888884 345678899999975
No 150
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=2e-21 Score=144.95 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=62.6
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKA 130 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 130 (164)
..+.+++||++|++.++.+|..++++++++|+|||++ +.+++++...|++.+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7889999999888886543 3579999999999
Q ss_pred CCC
Q 031201 131 DMD 133 (164)
Q Consensus 131 Dl~ 133 (164)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 985
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=1.4e-21 Score=141.52 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=87.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cc-------cceeeeEEEEEEEEECCEEEEEEEeeCCCcc-------c
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-------R 76 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~-------~ 76 (164)
+...++|+|+|.+|+|||||+|+|++..... .+ .++.+.+.....+..++..+.+.||||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 4568999999999999999999987765433 33 4556666655555556666799999999962 2
Q ss_pred cchhh-------hhhcc-------------cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-
Q 031201 77 FRTIT-------TAYYR-------------GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES- 135 (164)
Q Consensus 77 ~~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~- 135 (164)
+..+. ..++. .+|+++++++.++..-...-..+++.+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22222 22222 36788998876652111111223444433 6899999999998521
Q ss_pred CCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 136 KRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
......+.+.+.....+++++.+||++|+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~ 189 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDE 189 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC------
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCCh
Confidence 11122344566667788999999998764
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=1.4e-20 Score=148.48 Aligned_cols=146 Identities=20% Similarity=0.288 Sum_probs=100.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CCCCc-----ccc------eeeeEEE--EEEEEE---CCEEEEEEEeeCCC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----FIT------TIGIDFK--IRTIEL---DGKRIKLQIWDTAG 73 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~-----~~~------~~~~~~~--~~~~~~---~~~~~~~~l~d~~g 73 (164)
.++..+|+|+|+.++|||||+++|+.. .+... ... ..++++. ...+.+ ++..+.++||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356889999999999999999999762 11110 000 0111111 111211 45668999999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (164)
+..|...+...+..+|++|+|+|+++..+.+....|..... .++|+++++||+|+.+.. ..+...++.+..++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGL 155 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCC
Confidence 99999888889999999999999998766666666655443 278999999999997432 22334556666676
Q ss_pred ---cEEEEeccCCC
Q 031201 154 ---KFFETVMQRQI 164 (164)
Q Consensus 154 ---~~~~~Sa~~g~ 164 (164)
+++++||++|+
T Consensus 156 ~~~~vi~vSAktg~ 169 (600)
T 2ywe_A 156 DPEEAILASAKEGI 169 (600)
T ss_dssp CGGGCEECBTTTTB
T ss_pred CcccEEEEEeecCC
Confidence 49999999984
No 153
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.5e-21 Score=152.72 Aligned_cols=150 Identities=16% Similarity=0.092 Sum_probs=97.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc-------------------------------cceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 60 (164)
....+||+++|.+++|||||+++|++....... .+..+++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356789999999999999999999875322111 1122222222233333
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH---HHHHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCCCC
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESK 136 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~ 136 (164)
.+.+.|||+||++.|......++..+|++|+|+|+++.. ++.....+.+.+......+ .|++||+||+|+.+ .
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~-~ 320 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD-W 320 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT-T
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc-h
Confidence 368999999999999998889999999999999998742 1111112222222111223 45999999999973 2
Q ss_pred Cccc----hHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 137 RAVP----TSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 137 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
.+.. .++...+....+ ++++++||++|+
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~ 357 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGE 357 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCT
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCC
Confidence 2222 333444555444 589999999985
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=7.6e-21 Score=145.92 Aligned_cols=136 Identities=23% Similarity=0.295 Sum_probs=89.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc---------cchhhhhhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY 85 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~---------~~~~~~~~~ 85 (164)
.+|+|+|.+|+|||||+|+|++.... ....+..+.+.....+..++. .+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 233334444444556666774 578999999653 234456678
Q ss_pred ccccEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHH-HHHHHHhCC-cEEEEecc
Q 031201 86 RGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALADEYGI-KFFETVMQ 161 (164)
Q Consensus 86 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~ 161 (164)
+++|++++|+|+.+..+.. .+..|+.. .+.|+++|+||+|+.+. . ..++ .++. +.++ +++++||+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence 9999999999998753322 23333332 16899999999998521 1 1223 4454 5677 79999999
Q ss_pred CCC
Q 031201 162 RQI 164 (164)
Q Consensus 162 ~g~ 164 (164)
+|+
T Consensus 149 ~g~ 151 (439)
T 1mky_A 149 HNI 151 (439)
T ss_dssp TTB
T ss_pred CCC
Confidence 984
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=2.4e-21 Score=147.32 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=101.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC--------CCCCc-------ccceeeeEEEEEEEEECCEEEEEEEeeCCCcc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 75 (164)
.....++|+++|.+++|||||+++|++. .+... .....++++......++.....+.|||+||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456799999999999999999999873 21110 00111222222333333334689999999999
Q ss_pred ccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccchHHHHHHHHHhC
Q 031201 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG 152 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (164)
.|.......+..+|++|+|+|+++.... ....++..+... ++| +++++||+|+.+... ....++..++.+..+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9988888889999999999999875432 334455544443 577 889999999973111 112335667777765
Q ss_pred -----CcEEEEeccCC
Q 031201 153 -----IKFFETVMQRQ 163 (164)
Q Consensus 153 -----~~~~~~Sa~~g 163 (164)
++++++||++|
T Consensus 163 ~~~~~~~~i~~SA~~g 178 (405)
T 2c78_A 163 FPGDEVPVIRGSALLA 178 (405)
T ss_dssp SCTTTSCEEECCHHHH
T ss_pred ccccCCCEEEccHHHh
Confidence 68999999986
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=4.9e-21 Score=145.24 Aligned_cols=146 Identities=18% Similarity=0.136 Sum_probs=98.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC-------CCCCc-------ccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDG-------SFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~ 79 (164)
..+||+++|..++|||||+++|++. .+... .....++++......++.....+.|||+||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999873 11110 001122233333333433346899999999999988
Q ss_pred hhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccchHHHHHHHHHhC----
Q 031201 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG---- 152 (164)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---- 152 (164)
.....+..+|++|+|+|+++....+. ..++..+... ++| +++++||+|+.+... ....+++.++.++.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888999999999999988432222 2222333322 677 789999999973111 112345677777766
Q ss_pred -CcEEEEeccCC
Q 031201 153 -IKFFETVMQRQ 163 (164)
Q Consensus 153 -~~~~~~Sa~~g 163 (164)
++++++||++|
T Consensus 158 ~~~~i~~SA~~g 169 (397)
T 1d2e_A 158 ETPIIVGSALCA 169 (397)
T ss_dssp TSCEEECCHHHH
T ss_pred cCcEEEeehhhc
Confidence 58999999985
No 157
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.84 E-value=3.1e-20 Score=133.31 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=91.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC-CCCcccce-eeeEEEEEEEEECCEEEEEEEeeCCCccccch---------
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------- 79 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------- 79 (164)
+....++|+|+|.+|+|||||+++|++.. +.....++ .+.+.....+..++ ..+.||||||...+..
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 45567999999999999999999999877 44443333 33334444555555 5799999999765432
Q ss_pred --hhhhhcccccEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCCccch-------HHHHHHH
Q 031201 80 --ITTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGN-KADMDESKRAVPT-------SKGQALA 148 (164)
Q Consensus 80 --~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~~-------~~~~~~~ 148 (164)
....+++.+|++|+|+|+++... ...+..++..+..... ..|.++|+| |+|+... .... ++..++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHH
Confidence 12236788999999999986222 2222233333321111 345666666 9999732 1211 3345566
Q ss_pred HHhCCc---E--EEEeccCC
Q 031201 149 DEYGIK---F--FETVMQRQ 163 (164)
Q Consensus 149 ~~~~~~---~--~~~Sa~~g 163 (164)
+..+.. + +++||++|
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~ 192 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQD 192 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHH
T ss_pred HHhCCeEEEecCcccccccH
Confidence 666543 2 68898875
No 158
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=1e-21 Score=151.37 Aligned_cols=147 Identities=15% Similarity=0.107 Sum_probs=99.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCCc-----------------------------ccceeeeEEEEEEEEECC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDG 61 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (164)
...++|+++|.+++|||||+++|++. .+... .....+++.....+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-- 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence 45799999999999999999999864 22110 0011222222223333
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVN-KVLVGNKADMDE 134 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (164)
....+.|||+||++.|......++..+|++|+|+|+++.. +|+ .....+..+... ++| +++++||+|+.+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 3368999999999999988888999999999999998742 332 222233222222 454 899999999973
Q ss_pred CCC---ccchHHHHHHHHHhC-----CcEEEEeccCCC
Q 031201 135 SKR---AVPTSKGQALADEYG-----IKFFETVMQRQI 164 (164)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~g~ 164 (164)
... ....++..++.+..+ ++++++||++|+
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~ 197 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGD 197 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCc
Confidence 111 123345666777765 689999999884
No 159
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=1.3e-20 Score=141.04 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=79.1
Q ss_pred EEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCCcE
Q 031201 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQH-ASDNVNK 123 (164)
Q Consensus 55 ~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~ 123 (164)
..+.+++ +.+++||++|++.++..|..++++++++|+|||+++ .+++.+...|+..+... ...++|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 4455554 789999999999999999999999999999999999 78999999988887654 2357999
Q ss_pred EEEEeCCCCCCCC---------------CccchHHHHHHHH-----------HhCCcEEEEeccCCC
Q 031201 124 VLVGNKADMDESK---------------RAVPTSKGQALAD-----------EYGIKFFETVMQRQI 164 (164)
Q Consensus 124 ivv~nK~Dl~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~g~ 164 (164)
+|++||+|+.+.. .....+++.+++. ..++.+++|||++|+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~ 338 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE 338 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch
Confidence 9999999985211 1256677877762 346789999999873
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.83 E-value=4.2e-23 Score=160.85 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=101.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (164)
+.++|+++|++++|||||+++|.+..+.....++.+.++....+..++. ..+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4578999999999999999999987665555555544443333333221 378999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHH---HHHh--CCcEEEEeccCCC
Q 031201 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEY--GIKFFETVMQRQI 164 (164)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~ 164 (164)
|+|+++....+.. +.+......++|+++++||+|+.+.......++...+ +..+ .++++++||++|+
T Consensus 82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence 9999885433322 2222222347899999999999754333333333322 1122 3589999999985
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.83 E-value=1e-19 Score=133.32 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=94.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCEEEEEEEeeCCCcc-c--------cchhhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-R--------FRTITT 82 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~-~--------~~~~~~ 82 (164)
.+..+|+|+|++|+|||||+|+|++..+... ..+..+.......+..++ .++.+|||||.. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 3455899999999999999999999765321 111111111111123333 589999999986 2 333345
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEec
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVM 160 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (164)
..++.+|++++|+|.++ +.....++ +.+. ..+.|+++++||+|+.. ......+...++.+..++ .++++||
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA 156 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISA 156 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEEC
Confidence 67889999999999976 22222332 2222 23689999999999963 233334556667666776 7999999
Q ss_pred cCCC
Q 031201 161 QRQI 164 (164)
Q Consensus 161 ~~g~ 164 (164)
++|+
T Consensus 157 ~~g~ 160 (301)
T 1ega_A 157 ETGL 160 (301)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9874
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.83 E-value=4.7e-21 Score=147.46 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=86.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhh--------hhh
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~--------~~~ 84 (164)
..++|+++|++|+|||||+|+|++..+. ....++.+.+.....+.+++ ..+.||||||...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4578999999999999999999986432 22223333334444556676 568999999976554332 235
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+..+|++++|+|.+++.+... ..|++.+. ..|+++|+||+|+.+. .... ...++. .+.+++++||++|+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~-~~~~--~~~~~~--~~~~~i~iSAktg~ 369 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEK-QLIT--SLEYPE--NITQIVHTAAAQKQ 369 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCG-GGST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcc-hhhH--HHHHhc--cCCcEEEEECCCCC
Confidence 788999999999998765543 33444442 3689999999999732 2211 111111 35689999999984
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=5.4e-22 Score=153.53 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=96.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEE
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 92 (164)
++..+|+++|+.++|||||+++|.+..+.....+..+.+.....+..++ ..+.|||+||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4567999999999999999999988655443333333322222333344 47899999999999999999999999999
Q ss_pred EEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cchH--HHHHHHHHh--CCcEEEEeccCCC
Q 031201 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS--KGQALADEY--GIKFFETVMQRQI 164 (164)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~--~~~~~~~~~--~~~~~~~Sa~~g~ 164 (164)
+|+|+++ +++.+.+ ..+.. .++|+++++||+|+.+.... +..+ +...++..+ .++++++||++|+
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999987 4444333 22222 37899999999999743211 1100 000111222 2699999999985
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=2.4e-19 Score=137.56 Aligned_cols=145 Identities=22% Similarity=0.143 Sum_probs=91.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh-----------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------- 80 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~----------- 80 (164)
+..++|+|+|++|+|||||+|+|++.... ....+..+.+.....+.+++. .+.+||++|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45699999999999999999999987642 122222333334455677774 5789999996432211
Q ss_pred -hhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHH-----HHHHHHhCCc
Q 031201 81 -TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-----QALADEYGIK 154 (164)
Q Consensus 81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~ 154 (164)
...+++.+|++++|+|+++..+.+.. .+...+.. .+.|+++|+||.|+.+ ......++. ..+....+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVV-HREKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGST-TGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCC-chhhHHHHHHHHHHHHhccCCCCc
Confidence 12356789999999999875554432 22232322 2689999999999973 233222322 2223334679
Q ss_pred EEEEeccCCC
Q 031201 155 FFETVMQRQI 164 (164)
Q Consensus 155 ~~~~Sa~~g~ 164 (164)
++++||++|+
T Consensus 331 ~~~~SA~~g~ 340 (439)
T 1mky_A 331 LIFTSADKGW 340 (439)
T ss_dssp EEECBTTTTB
T ss_pred EEEEECCCCC
Confidence 9999999984
No 165
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=4.5e-19 Score=127.54 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=82.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcc-----
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR----- 86 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~----- 86 (164)
...++|+++|..|+|||||+|+|++..+.. ...+..+.......+..++ ..+.||||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 467999999999999999999999977522 2222222333444555555 58999999998776554433332
Q ss_pred ----cccEEEEEEECCChHHHHHH-HHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031201 87 ----GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDN--VNKVLVGNKADMD 133 (164)
Q Consensus 87 ----~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~Dl~ 133 (164)
++|++++|++++... +... ..|++.+......+ .|+++|+||+|+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987654 3333 35666666554433 4899999999995
No 166
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=5.7e-21 Score=146.49 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=84.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc--------ccchhhhhhcc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYR 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--------~~~~~~~~~~~ 86 (164)
..+|+++|.+|+|||||+|+|++..+... ..+.+.+.........-....+.+|||||.. .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999998765321 2222333322222333223579999999975 45666777889
Q ss_pred cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCCC
Q 031201 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQI 164 (164)
Q Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 164 (164)
++|++|+|+|+.+..+.... .+...+. ..+.|+++|+||+|+.+.... +.++. +.++ +++++||++|.
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISGTHGL 150 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBTTTTB
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeCcCCC
Confidence 99999999999876554321 2222232 247899999999998632211 11222 3466 78999999884
No 167
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=3e-19 Score=132.08 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred EEEEEEeeCCCccccchhhhhhcccccEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCC
Q 031201 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKAD 131 (164)
Q Consensus 63 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 131 (164)
.+.+++||++|++.++.+|..++++++++|+|||++ +.+++.+...|+..+.... ..++|++|++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378999999999999999999999999999999998 7788999888888776543 35899999999999
Q ss_pred CC
Q 031201 132 MD 133 (164)
Q Consensus 132 l~ 133 (164)
+.
T Consensus 240 L~ 241 (340)
T 4fid_A 240 LF 241 (340)
T ss_dssp HH
T ss_pred hh
Confidence 85
No 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.2e-20 Score=149.29 Aligned_cols=144 Identities=17% Similarity=0.124 Sum_probs=79.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCcccceeeeEEEEEEEEEC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELD 60 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (164)
....++|+++|.+++|||||+++|+... +.....+..+++.....+ .
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~--~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF--E 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE--E
Confidence 4567899999999999999999996421 001112222222222222 3
Q ss_pred CEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCCh----------HHHHHHHHHHHHHHHhcCCCCc-EEEEEeC
Q 031201 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHASDNVN-KVLVGNK 129 (164)
Q Consensus 61 ~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK 129 (164)
.....+.|||+||+..|.......+..+|++|+|+|+++. .+.+.+ ..+... ++| +++|+||
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~l---gip~iIvviNK 324 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRAL---GISEIVVSVNK 324 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHHS---SCCCEEEEEEC
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHHc---CCCeEEEEEec
Confidence 3346899999999999998888889999999999999852 232222 222222 454 8999999
Q ss_pred CCCCCCCCcc---chHHHHHHH-HHhCC-----cEEEEeccCCC
Q 031201 130 ADMDESKRAV---PTSKGQALA-DEYGI-----KFFETVMQRQI 164 (164)
Q Consensus 130 ~Dl~~~~~~~---~~~~~~~~~-~~~~~-----~~~~~Sa~~g~ 164 (164)
+|+.+..... ..++...+. +..++ +++++||++|+
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~ 368 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence 9997422211 223344454 44454 79999999984
No 169
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=1.7e-19 Score=136.13 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=67.6
Q ss_pred EEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCC----------hHHHHHHHHHHHHHHHhc-CCCCcE
Q 031201 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNK 123 (164)
Q Consensus 55 ~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ 123 (164)
..+.+++ +.+++||++|++.++.+|..++++++++|+|||+++ .++|++...|++.+.... ..++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3445554 789999999999999999999999999999999999 889999999999887653 357999
Q ss_pred EEEEeCCCCC
Q 031201 124 VLVGNKADMD 133 (164)
Q Consensus 124 ivv~nK~Dl~ 133 (164)
+||+||+|+.
T Consensus 288 iLvgNK~DL~ 297 (402)
T 1azs_C 288 ILFLNKQDLL 297 (402)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEChhhh
Confidence 9999999985
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=1.7e-19 Score=140.80 Aligned_cols=117 Identities=16% Similarity=0.105 Sum_probs=83.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-----------------CC-----cccceeeeEEEEEEEEECCEEEEEEEe
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF-----------------TT-----SFITTIGIDFKIRTIELDGKRIKLQIW 69 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (164)
.....+|+|+|.+|+|||||+++|+.... .. ...+..++......+..++ +.+.||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~li 87 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLL 87 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEE
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEE
Confidence 35678999999999999999999962110 00 0011122222333444444 689999
Q ss_pred eCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 70 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
||||+..|......+++.+|++|+|+|+++..+......|. .+.. .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999999865555544343 3322 3789999999999963
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=6.9e-20 Score=151.64 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=99.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccceeeeEEEEEEEEECCEEEEEEEeeCCCccc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS-------FTT-------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 76 (164)
.....++|+++|..++|||||+++|++.. +.. ....+.++++....+.++.....+.|||+||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 44567999999999999999999998731 000 0111222333222233444446899999999999
Q ss_pred cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccchHHHHHHHHHhC-
Q 031201 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG- 152 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~- 152 (164)
|.......+..+|++|+|+|+++.... +...++..+... ++| +++++||+|+.+... ....+++.++.+..+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 988888889999999999999874222 222333444332 577 789999999973211 112345677777765
Q ss_pred ----CcEEEEeccCC
Q 031201 153 ----IKFFETVMQRQ 163 (164)
Q Consensus 153 ----~~~~~~Sa~~g 163 (164)
++++++||++|
T Consensus 448 ~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 448 PGDDTPIVRGSALKA 462 (1289)
T ss_dssp CTTTCCEEECCSTTT
T ss_pred cccceeEEEEEeccC
Confidence 68999999998
No 172
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.80 E-value=1.3e-19 Score=143.06 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=80.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc----cceeeeEEEEEEE------------EECCEEEEEEEeeCCCcccc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTI------------ELDGKRIKLQIWDTAGQERF 77 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~d~~g~~~~ 77 (164)
+.++|+|+|++++|||||+++|++..+.... ..+.+..+..... ..+.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4579999999999999999999875443221 1122211111000 00001125999999999999
Q ss_pred chhhhhhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 78 RTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
..++...+..+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+.+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGST
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEeccccccc
Confidence 9999989999999999999998 677665542 222 3789999999999963
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=1.4e-19 Score=135.96 Aligned_cols=130 Identities=8% Similarity=0.033 Sum_probs=90.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEE
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (164)
+|+++|.+++|||||+++|+ . ...+++.....+..+ ...+.|||+||++.|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~--~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------K--KGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------E--EEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------h--CCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 1 122222222233333 3579999999999998877778899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCC-ccchHHHHHHHHHhC---CcEEE--EeccC
Q 031201 97 VTDESSFNNIRNWIRNIEQHASDNVNK-VLVGN-KADMDESKR-AVPTSKGQALADEYG---IKFFE--TVMQR 162 (164)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~--~Sa~~ 162 (164)
.. ..+.....++..+... ++|. ++++| |+|+ +... ....++++++.+..+ +++++ +||++
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 43 3344445555555443 5666 88899 9998 3221 112245666665543 69999 99998
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=5e-20 Score=142.01 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=86.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCC--------ccccchhhhhh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTITTAY 84 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g--------~~~~~~~~~~~ 84 (164)
-...+|+|+|.+|+|||||+|+|++..+... ..+.+.+..............+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3467999999999999999999999765321 22233334434444444446899999999 66677778888
Q ss_pred cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCC-cEEEEeccCC
Q 031201 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETVMQRQ 163 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (164)
+.++|++|+|+|..+..+ ....++..+.. ..+.|+++|+||+|+.+.. +...++. ..++ .++++||++|
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~--~~~~pvilV~NK~D~~~~~-----~~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILY--RTKKPVVLAVNKLDNTEMR-----ANIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHT--TCCSCEEEEEECC--------------CCSG-GGSSSSEEECCTTTC
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHH--HcCCCEEEEEECccchhhh-----hhHHHHH-HcCCCceEEeecccc
Confidence 999999999999876322 12222222222 2478999999999986321 1111221 2343 5789999987
Q ss_pred C
Q 031201 164 I 164 (164)
Q Consensus 164 ~ 164 (164)
.
T Consensus 170 ~ 170 (456)
T 4dcu_A 170 L 170 (456)
T ss_dssp T
T ss_pred c
Confidence 4
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=1.6e-19 Score=131.91 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=90.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCc------ccceee--------------------eEE------------
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTIG--------------------IDF------------ 52 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------~~~~~~--------------------~~~------------ 52 (164)
.....++|+|+|.+|+|||||+|+|++..+.+. ..++.. .+.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999887421 112100 000
Q ss_pred -------------EEEEEEECCEEEEEEEeeCCCcc-------------ccchhhhhhcccccEEE-EEEECCChHHHHH
Q 031201 53 -------------KIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNN 105 (164)
Q Consensus 53 -------------~~~~~~~~~~~~~~~l~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~ 105 (164)
....+... ....+.|||+||.. .+..+...+++.++.+| +|+|+++..+...
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 180 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred HhcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence 00000001 12479999999953 34456667888888666 6999987544333
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHH--HHHhC-CcEEEEeccCCC
Q 031201 106 IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL--ADEYG-IKFFETVMQRQI 164 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~g~ 164 (164)
...+...+. ..+.|+++|+||+|+.+.. ....+..+.. ....+ .+++++||++|+
T Consensus 181 ~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 181 ALKIAKEVD---PQGQRTIGVITKLDLMDEG-TDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HHHHHHHHC---TTCSSEEEEEECGGGSCTT-CCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HHHHHHHhC---CCCCeEEEEEEccccCCCC-chHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 323444432 3478999999999997332 2222222110 00112 378899999874
No 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=8.7e-18 Score=121.31 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=78.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhh-------hh
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT-------AY 84 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~-------~~ 84 (164)
...++|+++|.+|+|||||+|+|++..+... ..+..+.......+..++ +.+.||||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 4579999999999999999999999775321 111112122223333444 6799999999866543221 11
Q ss_pred --cccccEEEEEEECCChHHHHHH-HHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031201 85 --YRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDN--VNKVLVGNKADMD 133 (164)
Q Consensus 85 --~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~Dl~ 133 (164)
...+|++++|+|++.. ++... ..|++.+....+.+ .|+++|+||+|+.
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 2479999999998653 23332 35666666554433 6999999999986
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=8.3e-19 Score=121.78 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=87.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----------cchhh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT 81 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----------~~~~~ 81 (164)
.....+|+++|++|+|||||++++++..+.....++.+.+.....+..++ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34567999999999999999999998764433344444333333333333 578999999632 22222
Q ss_pred hhhc---ccccEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccchHHHHHHHHHhC--C
Q 031201 82 TAYY---RGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYG--I 153 (164)
Q Consensus 82 ~~~~---~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~--~ 153 (164)
..++ ..++.+++++|+.++.++. .+..|+. . .+.|+++++||+|+... .++...+.+..++.+.+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3333 4789999999998764432 2222332 1 26889999999998522 12222455666666664 4
Q ss_pred cEEEEeccCCC
Q 031201 154 KFFETVMQRQI 164 (164)
Q Consensus 154 ~~~~~Sa~~g~ 164 (164)
.++++||++++
T Consensus 174 ~~~~~Sal~~~ 184 (210)
T 1pui_A 174 QVETFSSLKKQ 184 (210)
T ss_dssp EEEECBTTTTB
T ss_pred ceEEEeecCCC
Confidence 78999999873
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=5.3e-19 Score=132.52 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=97.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceee---eEEEEE----------------------------------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG---IDFKIR---------------------------------- 55 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~---~~~~~~---------------------------------- 55 (164)
....+|+|+|++|+|||||+|+|++..+.+......+ ......
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3566999999999999999999999876433222111 000000
Q ss_pred ---------------EEEE-CCEEEEEEEeeCCCcccc-------------chhhhhhcccccEEEEEEECCChHHHHHH
Q 031201 56 ---------------TIEL-DGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI 106 (164)
Q Consensus 56 ---------------~~~~-~~~~~~~~l~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 106 (164)
.+.+ ......+.|||+||...+ ..+...++.++|++|+|+|..+.+...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 0000 001135899999997665 556677899999999999876533221
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 107 RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 107 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
..|+..+....+.+.|+++|+||+|+.+ ......+....+....+.+|+.+|++++
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMD-KGTDAVEILEGRSFKLKYPWVGVVNRSQ 245 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCC-TTCCSHHHHTTSSSCCSSCCEEECCCCH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCC-CcccHHHHHcCccccccCCeEEEEECCh
Confidence 2344445555555789999999999973 3334445455555666789999999875
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=8.2e-18 Score=127.34 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=47.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccc--eeeeEEEEEEE-------------------EECC-EEEEEEEeeCCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTI-------------------ELDG-KRIKLQIWDTAG 73 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~--~~~~~~~~~~~-------------------~~~~-~~~~~~l~d~~g 73 (164)
++|+|+|.+|+|||||+|+|++........+ |.........+ .+++ ..++++|||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763222111 11111111111 1233 247899999999
Q ss_pred ccc----cchhhh---hhcccccEEEEEEECCCh
Q 031201 74 QER----FRTITT---AYYRGAMGILLVYDVTDE 100 (164)
Q Consensus 74 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 100 (164)
... ...+.. ..++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222333 346899999999999874
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=1.1e-18 Score=127.89 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=76.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC-CCCCcc--------cceeeeEEEEEEEEECCEEEEEEEeeCCCc-------c
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG-SFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E 75 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~-------~ 75 (164)
....++|+|+|++|+|||||+++|.+. .++... .++.........+..++....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 456689999999999999999998875 443332 111111111111222344568999999997 4
Q ss_pred ccchhhh-------hhcccc-------------cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 76 RFRTITT-------AYYRGA-------------MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 76 ~~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
.+..+.. .++... ++++++.+.+. .+++.+.. +.+.... .+.++++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~- 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH-NKVNIVPVIAKADTLT- 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHT-TTSCEEEEECCGGGSC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCC-
Confidence 4444443 333322 22333333221 12333321 2233332 3678999999999863
Q ss_pred CCc--cchHHHHHHHHHhCCcEEEEeccCC
Q 031201 136 KRA--VPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
..+ ...+++.++++.++++||++||++|
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES 199 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc
Confidence 222 2346788999999999999999976
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=126.11 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc--------cceeeeEEEEEEEEECCEEEEEEEeeCCCccccc-----
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----- 78 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~----- 78 (164)
....++|+|+|++|+|||||++.|++..++... .++.........+..++....+.+||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 456688999999999999999999997663221 1122211111111223334579999999965431
Q ss_pred --hh------------------hhhhcccccEEEEEEECCCh-HHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 79 --TI------------------TTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 79 --~~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
.+ ...++.++++.+++|....- .+++... .|+..+. .++|+++|+||+|+. ..
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll-~~ 182 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTL-TP 182 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSS-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCc-cH
Confidence 11 12344566655555555432 3444443 3555553 278999999999986 33
Q ss_pred Cccch--HHHHHHHHHhCCcEEEEeccCCC
Q 031201 137 RAVPT--SKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+.+.. +++.+++..+++++|++||++++
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~ 212 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDE 212 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCc
Confidence 33332 67888889999999999998763
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=8.4e-19 Score=128.51 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=99.9
Q ss_pred HHHHHHhcCCCC-CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChH-HHHHHH
Q 031201 30 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR 107 (164)
Q Consensus 30 sl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 107 (164)
+|+.+++.+.|. ..+.+|.+..+. ..+..++ .+++||+ ++++..+++.+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 588888888888 788899984443 3332333 7899999 8899999999999999999999999997 788888
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhC--CcEEEEeccCCC
Q 031201 108 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETVMQRQI 164 (164)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~g~ 164 (164)
.|+..+.. .++|+++|+||+||.+ .+.+ ++++++++.++ +++++|||++|+
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~-~~~v--~~~~~~~~~~~~~~~~~~~SAktg~ 158 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYD-EDDL--RKVRELEEIYSGLYPIVKTSAKTGM 158 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCC-HHHH--HHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCC-chhH--HHHHHHHHHHhhhCcEEEEECCCCc
Confidence 99987765 3789999999999963 2222 55778888887 899999999985
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=1.9e-17 Score=129.46 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=90.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCc--------------------ccceeeeEE--EEEEEEECCEEEEEEEee
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS--------------------FITTIGIDF--KIRTIELDGKRIKLQIWD 70 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~d 70 (164)
....+|+|+|++|+|||||+++|+....... .....++++ ....+..++ +.+.|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 5679999999999999999999986321100 000111111 112233333 6899999
Q ss_pred CCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH
Q 031201 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE 150 (164)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (164)
+||+..|......++..+|++|+|+|+++.... ....++..+ ...++|+++++||+|+..... .+...++.+.
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~---~~~~ipiivviNK~Dl~~~~~---~~~~~~i~~~ 161 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT---RLRDTPILTFMNKLDRDIRDP---MELLDEVENE 161 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH---TTTTCCEEEEEECTTSCCSCH---HHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH---HHcCCCEEEEEcCcCCccccH---HHHHHHHHHH
Confidence 999999998888899999999999999874321 112222222 223789999999999974321 2334555566
Q ss_pred hCCc-----EEEEeccCC
Q 031201 151 YGIK-----FFETVMQRQ 163 (164)
Q Consensus 151 ~~~~-----~~~~Sa~~g 163 (164)
.+.+ +..+|++++
T Consensus 162 l~~~~~~~~~pi~sa~~~ 179 (529)
T 2h5e_A 162 LKIGCAPITWPIGCGKLF 179 (529)
T ss_dssp HCCEEEESEEEESCGGGC
T ss_pred hCCCccceecceecccCc
Confidence 6653 233566554
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=2.5e-17 Score=132.42 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhcC--CCCCc----------------ccceeeeEEEEEEEEECCEEEEEEEe
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS----------------FITTIGIDFKIRTIELDGKRIKLQIW 69 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (164)
+.....+..+|+|+|..|+|||||+++|+.. .+... .....++......+..++ +.+.||
T Consensus 5 l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~li 82 (691)
T 1dar_A 5 VEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINII 82 (691)
T ss_dssp CCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEE
T ss_pred ccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEE
Confidence 3455678999999999999999999999842 11000 011111222223334443 689999
Q ss_pred eCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 70 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
||||+..|...+..+++.+|++|+|+|+++..+++....|.. +.. .++|+++++||+|+...
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence 999999999989999999999999999998766666555543 322 27899999999999743
No 185
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=2.1e-17 Score=135.29 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC--CCC--------------cccc--eeeeEEEEEEEE------------ECC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT--------------SFIT--TIGIDFKIRTIE------------LDG 61 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~--------------~~~~--~~~~~~~~~~~~------------~~~ 61 (164)
..+..||+|+|+.++|||||+++|+... ... ...+ |+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998641 100 0111 111111111222 234
Q ss_pred EEEEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 031201 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV 139 (164)
Q Consensus 62 ~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (164)
..+.++||||||+..|...+..+++.+|++|+|+|+++..+++....|..... .++|+++++||+|+...+...
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~~e~~~ 169 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRALLELQV 169 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHHHTSCC
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcchhhhcc
Confidence 46899999999999999999999999999999999998777766555544332 268999999999986433333
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.72 E-value=2e-17 Score=132.49 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=81.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc------------------cceeeeEEEEEEEEECCEEEEEEEeeCCC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 73 (164)
.+...+|+|+|+.|+|||||+++|++....... ....++......+... .+.++|||+||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 356789999999999999999999853322100 0111222222233333 47899999999
Q ss_pred ccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
+..|......+++.+|++++|+|..+.-... ...++..+... ++|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence 9999988889999999999999987643322 22344444332 68999999999986
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=4.2e-17 Score=131.18 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=83.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc--CCCCCc-----------c-----cceeeeEEEEEEEEECCEEEEEEEeeCC
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSD--GSFTTS-----------F-----ITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 72 (164)
+..+..+|+|+|.+|+|||||+++|+. ..+... + .+..++......+..++ +.+.|||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 346789999999999999999999985 222100 0 01111111122334444 689999999
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (164)
|+..+......+++.+|++|+|+|+++..+......|.. +... ++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 999999888899999999999999998666655544443 3332 789999999999974
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=7.1e-18 Score=124.04 Aligned_cols=147 Identities=14% Similarity=0.192 Sum_probs=86.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCccc------ceeeeEEEEE------------------------------
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI------TTIGIDFKIR------------------------------ 55 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~------~~~~~~~~~~------------------------------ 55 (164)
....++|+|+|.+|+|||||+|+|++..+.+... ++. +.....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLI-LQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIR 99 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEE-EEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEE-EEEEeCCCcccccchhhhhhhhcccccccCCHHHHH
Confidence 4567899999999999999999999987632211 100 001000
Q ss_pred ----------------------EEE-ECCEEEEEEEeeCCCccc-------------cchhhhhhcccccEEEEEEECCC
Q 031201 56 ----------------------TIE-LDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTD 99 (164)
Q Consensus 56 ----------------------~~~-~~~~~~~~~l~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~ 99 (164)
.+. .......+.||||||... +......++..+|++++|+|..+
T Consensus 100 ~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 100 EEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 000 001114799999999643 44556678889999999999744
Q ss_pred hH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCC
Q 031201 100 ES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQ 163 (164)
Q Consensus 100 ~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (164)
.. .-.....+...+ ...+.|+++|+||+|+.+.. ....+.........+.+|+++|+.++
T Consensus 180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v~~~sa 240 (315)
T 1jwy_B 180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKG-TDAMEVLTGRVIPLTLGFIGVINRSQ 240 (315)
T ss_dssp SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSS-CCCHHHHTTSSSCCTTCEEECCCCCH
T ss_pred cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcc-hHHHHHHhCCCccCCCCeEEEecCCh
Confidence 22 101111222222 23478999999999997332 21222222111112367888888764
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.70 E-value=5.5e-17 Score=123.23 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=94.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc----cchhhhh---hcccc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGA 88 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~----~~~~~~~---~~~~~ 88 (164)
..|+|+|++|+|||||++.+++........+..+.......+..++ ...+.+||+||... +..+... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999988643111111111111122233333 24789999999632 2112222 24579
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccCCC
Q 031201 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (164)
+.++.++|++ .+.+.++..+.+++..+.. ...|.++|+||+|+... ...++..+..+..+++++.+||++|+
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 9999999998 5667777777666655432 25788999999998632 33445556666678899999999874
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=2.8e-16 Score=126.58 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=84.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC--CCCc-----------c-----cceeeeEEEEEEEEEC-----CEEEEEE
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTS-----------F-----ITTIGIDFKIRTIELD-----GKRIKLQ 67 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 67 (164)
..++..+|+|+|..++|||||+++|+... +... . ....++......+.++ +..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 44678899999999999999999997531 1110 0 1111222222223332 3347899
Q ss_pred EeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031201 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (164)
Q Consensus 68 l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (164)
||||||+..|...+...++.+|++|+|+|+++.........|. .+.. .++|+++++||+|+....
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccccc
Confidence 9999999999988899999999999999999765544433332 2222 378999999999987443
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1.9e-16 Score=118.17 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCE---------------EEEEEEeeCCCccccc--
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERFR-- 78 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g~~~~~-- 78 (164)
++|+++|.+|+|||||+|+|++........+..+.+.....+.+++. ...++|||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999997643222221111111112333432 1479999999987653
Q ss_pred --hhh---hhhcccccEEEEEEECCCh----------HHHHHHHHHHHHH------------------------------
Q 031201 79 --TIT---TAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI------------------------------ 113 (164)
Q Consensus 79 --~~~---~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~------------------------------ 113 (164)
.+. ..+++++|++++|+|+++. +.++.+..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 222 2346899999999999851 2333322211111
Q ss_pred ----------HH-------------------h-cCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 114 ----------EQ-------------------H-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 114 ----------~~-------------------~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
.+ + .....|+++++|+.|..- ......+.++++++..+++++.+||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 0 112489999999999642 223346678888888899999999874
No 192
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.69 E-value=1.5e-16 Score=127.95 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=79.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceee-eEEEEE------EE---------------------------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIG-IDFKIR------TI--------------------------- 57 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~-~~~~~~------~~--------------------------- 57 (164)
...++|+|+|.+|+|||||+|+|++..+.+ ...++.. ++.... ++
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 357899999999999999999999876433 2222221 000000 11
Q ss_pred -------------------EECCEE--EEEEEeeCCCccc---cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHH
Q 031201 58 -------------------ELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113 (164)
Q Consensus 58 -------------------~~~~~~--~~~~l~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 113 (164)
..+... ..+.||||||... .......+++.+|++|+|+|++++.+..+...|.+.+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 111000 2589999999654 3345667889999999999999887776665555444
Q ss_pred HHhcCCCCcEEEEEeCCCCC
Q 031201 114 EQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 114 ~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.. .+.|+++|+||+|+.
T Consensus 227 ~~---~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQV 243 (695)
T ss_dssp TT---SCCCEEEEEECGGGG
T ss_pred Hh---hCCCEEEEEECcccc
Confidence 32 257899999999986
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=1.7e-16 Score=124.70 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=79.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC---CcccceeeeEEEEE----------------------EEEE------
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIR----------------------TIEL------ 59 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~----------------------~~~~------ 59 (164)
.....++|+|+|.+|+|||||+|+|++..+. ....++........ .+..
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 4467899999999999999999999998763 22222111000000 0000
Q ss_pred CCEE---------EEEEEeeCCCccc-----------cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCC
Q 031201 60 DGKR---------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD 119 (164)
Q Consensus 60 ~~~~---------~~~~l~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 119 (164)
++.. ..+.||||||... +......++..+|++|+|+|+++....+....++..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 0000 2589999999764 445666778899999999999875444455555555533 3
Q ss_pred CCcEEEEEeCCCCC
Q 031201 120 NVNKVLVGNKADMD 133 (164)
Q Consensus 120 ~~p~ivv~nK~Dl~ 133 (164)
+.|+++|+||+|+.
T Consensus 218 ~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 218 EDKIRVVLNKADMV 231 (550)
T ss_dssp GGGEEEEEECGGGS
T ss_pred CCCEEEEEECCCcc
Confidence 57899999999986
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.61 E-value=4.9e-17 Score=121.57 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=81.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcc------cceee-------------------------------------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIG------------------------------------- 49 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~------~~~~~------------------------------------- 49 (164)
...++|+|+|.+++|||||+|+|++..+.+.. .++..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998774221 12200
Q ss_pred ------eEEEEEEEEEC-CEEEEEEEeeCCCcc-------------ccchhhhhhccccc-EEEEEEECCChHHHHHHHH
Q 031201 50 ------IDFKIRTIELD-GKRIKLQIWDTAGQE-------------RFRTITTAYYRGAM-GILLVYDVTDESSFNNIRN 108 (164)
Q Consensus 50 ------~~~~~~~~~~~-~~~~~~~l~d~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 108 (164)
+......+.+. .....+.|||+||.. .+..+...++...+ ++++|.|.+..-.-..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 00000001110 012479999999953 33445666776655 4555666554211111
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHH--HHHHhC-CcEEEEeccCC
Q 031201 109 WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA--LADEYG-IKFFETVMQRQ 163 (164)
Q Consensus 109 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~g 163 (164)
+...+....+.+.|+++|+||+|+.+.... ..+..+. +....+ .+++.+||++|
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccc
Confidence 222333333457899999999999733221 1111110 011123 25678999875
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=6.8e-15 Score=110.21 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=88.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-Cccc-ceeeeEEEEEEEEECC-------------------EEEEEEEeeCCCc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFI-TTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQ 74 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~-------------------~~~~~~l~d~~g~ 74 (164)
++|+++|.+|+|||||+|+|++.... ..+. .|...+.... .+++ ....+++||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 68999999999999999999885421 1111 1122122111 2221 2357999999997
Q ss_pred cccch----h---hhhhcccccEEEEEEECCCh----------HHHHHHHHHHHH-------------------------
Q 031201 75 ERFRT----I---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRN------------------------- 112 (164)
Q Consensus 75 ~~~~~----~---~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~------------------------- 112 (164)
....+ + ....++.+|++++|+|+++. +.++.+..+..+
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 65431 2 22347899999999999751 122222111110
Q ss_pred --------------HHHh-------------------c-CCCCcEEEEEeCCCC--CCCCCccchHHHHHHHHHhCCcEE
Q 031201 113 --------------IEQH-------------------A-SDNVNKVLVGNKADM--DESKRAVPTSKGQALADEYGIKFF 156 (164)
Q Consensus 113 --------------~~~~-------------------~-~~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~ 156 (164)
+..- . -...|+++++||.|. .+..+....+.++++++..+++++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv 239 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV 239 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence 0000 0 113799999999984 321113446778889999999999
Q ss_pred EEeccC
Q 031201 157 ETVMQR 162 (164)
Q Consensus 157 ~~Sa~~ 162 (164)
++||++
T Consensus 240 ~iSAk~ 245 (368)
T 2dby_A 240 VVSARL 245 (368)
T ss_dssp EECHHH
T ss_pred Eeechh
Confidence 999986
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.55 E-value=1.9e-15 Score=105.57 Aligned_cols=139 Identities=18% Similarity=0.144 Sum_probs=80.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEE--------------EEEEEEEC----------------CEE
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--------------KIRTIELD----------------GKR 63 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~ 63 (164)
...+|+|+|.+|+|||||+++|+..............+. ....+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999987522111111110000 00111110 012
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHH
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (164)
+.+.+||++|.... . ..+....+.+++|+|+.+... ....+...+ +.|.++|+||+|+.+ ......++
T Consensus 109 ~d~iiidt~G~~~~-~--~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~------~~~~iiv~NK~Dl~~-~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLIC-P--VDFDLGENYRVVMVSVTEGDD--VVEKHPEIF------RVADLIVINKVALAE-AVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSG-G--GGCCCSCSEEEEEEEGGGCTT--HHHHCHHHH------HTCSEEEEECGGGHH-HHTCCHHH
T ss_pred CCEEEEeCCCCCCC-C--chhccccCcEEEEEeCCCcch--hhhhhhhhh------hcCCEEEEecccCCc-chhhHHHH
Confidence 46788998884110 0 011125678999999876432 111111111 467899999999862 22234566
Q ss_pred HHHHHHHh--CCcEEEEeccCCC
Q 031201 144 GQALADEY--GIKFFETVMQRQI 164 (164)
Q Consensus 144 ~~~~~~~~--~~~~~~~Sa~~g~ 164 (164)
..++.+.. +++++++||++|+
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~ 199 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGK 199 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTB
T ss_pred HHHHHHHhCCCCeEEEeecCCCC
Confidence 66666665 4689999999984
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.55 E-value=3.7e-14 Score=111.34 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=85.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC----------------------CCCcccceeeeEEEEEEEEECCEEEEEEEee
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 70 (164)
.+.-+|+|+|..++|||||.++|+... ........+++......+.+++ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 467899999999999999999995311 1112222222223334455555 6899999
Q ss_pred CCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH
Q 031201 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 145 (164)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 145 (164)
|||+..|......-++-+|++|+|+|+..--.-+....| +.+..+ ++|.++++||+|..........++++
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~ad~~~~~~~i~ 177 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREALHPLDVMADIE 177 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCCCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchhcchhHhhhhhh
Confidence 999999999999999999999999999873222233234 333333 78999999999987544433333333
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.53 E-value=3.9e-17 Score=114.62 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=76.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEE------------EEEEEEC-CEEE----------------
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK------------IRTIELD-GKRI---------------- 64 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~---------------- 64 (164)
..++|+|+|.+|+|||||+++|+...+...+.++...++. ...+.++ +..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999987655444444443321 1112221 1111
Q ss_pred ---EEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccch
Q 031201 65 ---KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 141 (164)
Q Consensus 65 ---~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (164)
.+.+.|++|.-.. ...+....+..+.+.|........ ......+ ..|.++|+||+|+.+ .+....
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~------~~~~iiv~NK~Dl~~-~~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTI--EKHPGIM------KTADLIVINKIDLAD-AVGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH------TTCSEEEEECGGGHH-HHTCCH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhH--hhhhhHh------hcCCEEEEeccccCc-hhHHHH
Confidence 2444444442100 001111233445566642211100 0001111 357799999999862 333456
Q ss_pred HHHHHHHHHh--CCcEEEEeccCCC
Q 031201 142 SKGQALADEY--GIKFFETVMQRQI 164 (164)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~Sa~~g~ 164 (164)
++..++++.. +++++++||++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~ 209 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTME 209 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCT
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCC
Confidence 6677777765 5799999999985
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.50 E-value=6e-15 Score=110.34 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=54.9
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHH
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (164)
+.+.|||+||... ........+|++++|+|....+.+..+.. .. .+.|.++|+||+|+.+. ... ...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~~-~~~p~ivVlNK~Dl~~~-~~~-~~~ 238 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------GV-LELADIVVVNKADGEHH-KEA-RLA 238 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------TS-GGGCSEEEEECCCGGGH-HHH-HHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------hH-hhcCCEEEEECCCCcCh-hHH-HHH
Confidence 5799999999432 23334588999999999876544322221 00 13588999999998621 111 111
Q ss_pred HHHHHHH---h-------CCcEEEEeccCCC
Q 031201 144 GQALADE---Y-------GIKFFETVMQRQI 164 (164)
Q Consensus 144 ~~~~~~~---~-------~~~~~~~Sa~~g~ 164 (164)
..++... . +.+++.+||++|+
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 269 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGR 269 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCC
Confidence 2222222 1 5789999999984
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.3e-13 Score=103.38 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=88.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch----h---hhhh
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----I---TTAY 84 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~----~---~~~~ 84 (164)
+.-..+|+++|.|++|||||+|+|++........+..+.+.....+.+++ .+++|.|+||...-.+ + .-..
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 34567999999999999999999999765444444455555556667777 5789999999532211 1 1234
Q ss_pred cccccEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CCCccchHHHHHHHHHhC
Q 031201 85 YRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-------SKRAVPTSKGQALADEYG 152 (164)
Q Consensus 85 ~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~ 152 (164)
++.+|++++|+|+++|.. .+.+...+........ ..|.+++.||.|... .......++++.+...+.
T Consensus 147 i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~-~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLN-KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp HHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEET-CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred HHhcCccccccccCccHHHHHHHHHHHHHhhHhhc-cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence 578999999999998743 3333333333222222 567788999999631 112234455555555443
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=3.8e-13 Score=108.61 Aligned_cols=130 Identities=15% Similarity=0.075 Sum_probs=84.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC--------C----------CCcccceeeeEEEEEEEEEC-----CEEEEEEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--------F----------TTSFITTIGIDFKIRTIELD-----GKRIKLQI 68 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--------~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l 68 (164)
-++.-+|+|+|+.++|||||..+|+... . ..+....+++......+.+. ...+.++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 3688999999999999999999985311 0 01111222222222333332 23578999
Q ss_pred eeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH
Q 031201 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 145 (164)
Q Consensus 69 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 145 (164)
+||||+..|......-++-+|++|+|+|+..--.-+...-|.+.... ++|.++++||+|....+.....++++
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~a~~~~~~~ei~ 162 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQGANFLRVVEQIK 162 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTTCCHHHHHHHHH
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccCccHHHHHHHhh
Confidence 99999999999999999999999999999863222222223333332 78999999999986544444444443
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.40 E-value=2.1e-12 Score=96.31 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=48.9
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHH
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (164)
+.+.|+|++|.... .......+|++++|+|.++.+..+.+.. .+ ...|.++|+||+|+.+.. .. ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~~-~~~ 233 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-PA-RRI 233 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-HH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-hH-HHH
Confidence 47899999995321 2344678999999999987543322211 11 135779999999985211 00 011
Q ss_pred HHHHHH----------HhCCcEEEEeccCCC
Q 031201 144 GQALAD----------EYGIKFFETVMQRQI 164 (164)
Q Consensus 144 ~~~~~~----------~~~~~~~~~Sa~~g~ 164 (164)
...+.. .++.+++.+||++|+
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~ 264 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGE 264 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCT
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCC
Confidence 222221 124578999999985
No 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=7.4e-13 Score=96.96 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=70.3
Q ss_pred ccccchhhhhhcccccEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc-hHHHHHHHHHh
Q 031201 74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADEY 151 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~ 151 (164)
++++..+.+.+++++|.+++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+ ...+. .++..++.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~-~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLN-EEEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCC-HHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCC-ccccHHHHHHHHHHHHC
Confidence 5667777888999999999999999987 88888899887765 3789999999999963 22222 45566777778
Q ss_pred CCcEEEEeccCCC
Q 031201 152 GIKFFETVMQRQI 164 (164)
Q Consensus 152 ~~~~~~~Sa~~g~ 164 (164)
+++++++||++|+
T Consensus 142 g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 142 GYDVLKVSAKTGE 154 (302)
T ss_dssp TCEEEECCTTTCT
T ss_pred CCeEEEEECCCCC
Confidence 9999999999984
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.37 E-value=9.1e-14 Score=110.99 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=79.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC--CCC----------------CcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG--SFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~ 76 (164)
..||+|+|+.++|||||.++|+.. ... .+....+++......+.+++ +.++|.||||+..
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence 468999999999999999998641 111 01111222222222333333 6799999999999
Q ss_pred cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
|......-++-+|++|+|+|+..--.-+. ...+..+..+ ++|.++++||+|....+.
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEeccccccCCH
Confidence 99999999999999999999986322222 2333333333 688899999999864443
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=4.6e-13 Score=100.86 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCE---------------EEEEEEeeCCCcc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQE 75 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~d~~g~~ 75 (164)
......+|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+++. ...+++||+||..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 3355689999999999999999999997654433333333333333444332 2359999999976
Q ss_pred ccch-------hhhhhcccccEEEEEEECCChH
Q 031201 76 RFRT-------ITTAYYRGAMGILLVYDVTDES 101 (164)
Q Consensus 76 ~~~~-------~~~~~~~~~~~~i~v~d~~~~~ 101 (164)
...+ .+..+++++|++++|+|+.+.+
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 5443 3456778999999999997543
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.37 E-value=8.7e-13 Score=106.39 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=83.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCccc-ceee--eEE-------------------------------------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIG--IDF------------------------------------- 52 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~--~~~------------------------------------- 52 (164)
....+|+|+|..++|||||+|+|++..+.+... .... +..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 467799999999999999999999987632111 0000 000
Q ss_pred -----------EEEEEEECCEEEEEEEeeCCCccc-------------cchhhhhhc-ccccEEEEEEECCChHHHHHHH
Q 031201 53 -----------KIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIR 107 (164)
Q Consensus 53 -----------~~~~~~~~~~~~~~~l~d~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~ 107 (164)
-...+...+. .++.|+|+||-.. +..+...++ ..+|++++|+|++....-.+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0011111111 2588999999433 222334444 5789999999998643222222
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHH----hC-CcEEEEeccCCC
Q 031201 108 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YG-IKFFETVMQRQI 164 (164)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~g~ 164 (164)
.++..+ ...+.|+++|+||+|+.+.. ....+ ... .+. .+ .+++.+||++|.
T Consensus 208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~-~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 208 KIAKEV---DPQGQRTIGVITKLDLMDEG-TDARD-VLE-NKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp HHHHHH---CTTCSSEEEEEECTTSSCTT-CCSHH-HHT-TCSSCCSSCEEECCCCCCEESS
T ss_pred HHHHHH---HhcCCCEEEEEeCcccCCcc-hhhHH-HHH-HHhhhhhccCCceEEecccccc
Confidence 233333 23478999999999997322 22111 111 111 12 256778998874
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.36 E-value=2e-12 Score=92.43 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=40.7
Q ss_pred EEEEEeeCCCccccchhhh------hhcccccEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
+.+.|||+||......... ..+.+ +++|+++|... +..+.....+.... ....+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEeccccc
Confidence 5799999999875443221 23466 88888998754 22332222111111 111257899999999986
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.36 E-value=1.8e-13 Score=101.75 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=50.9
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccc--h
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--T 141 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 141 (164)
+.+.||||||...... .....+|++++|+|.+..+.++.+.. .. .+.|.++|+||+|+.+. .... .
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~-~~~~~~~ 216 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNH-TNVAIAR 216 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCH-HHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCCh-HHHHHHH
Confidence 5799999999654333 24578999999999876543221111 00 13578999999998621 1111 1
Q ss_pred HHHHHHHHHh-------CCcEEEEeccCCC
Q 031201 142 SKGQALADEY-------GIKFFETVMQRQI 164 (164)
Q Consensus 142 ~~~~~~~~~~-------~~~~~~~Sa~~g~ 164 (164)
++..+..... ..+++.+||++|+
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 246 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKR 246 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTB
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCC
Confidence 1222211121 3578999999874
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=3.1e-11 Score=91.07 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=59.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCE-------------E--EEEEEeeCCCcc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK-------------R--IKLQIWDTAGQE 75 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~l~d~~g~~ 75 (164)
.....+|+++|++|+|||||+|.|++... .....+..+.+.....+.+++. . ..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34567999999999999999999999765 3333333232223333444431 1 368999999954
Q ss_pred c-------cchhhhhhcccccEEEEEEECCC
Q 031201 76 R-------FRTITTAYYRGAMGILLVYDVTD 99 (164)
Q Consensus 76 ~-------~~~~~~~~~~~~~~~i~v~d~~~ 99 (164)
. +.......++.+|.++.|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 22234445678999999999863
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.17 E-value=1.6e-11 Score=91.17 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=49.6
Q ss_pred EEEEEeeCCCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHH
Q 031201 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (164)
+.+.|+||+|...-. ......+|.+++++|.+..+..+.+.... . ..+.++++||+|+.. ........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~-~~~~s~~~ 215 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGD-GERRASAA 215 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTC-CHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccC-chhHHHHH
Confidence 579999999964321 22356899999999987543322111111 1 134577779999742 12111122
Q ss_pred HHHHHHHh----------CCcEEEEeccCCC
Q 031201 144 GQALADEY----------GIKFFETVMQRQI 164 (164)
Q Consensus 144 ~~~~~~~~----------~~~~~~~Sa~~g~ 164 (164)
.+++.... ..+++.+||++|+
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~ 246 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGK 246 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCC
Confidence 33333211 3578999999874
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=80.57 Aligned_cols=89 Identities=6% Similarity=-0.072 Sum_probs=54.5
Q ss_pred CCccccchhhhhhcccccEEEEEEECCChHHHHHHHHHH----HHHHHhc-CCCCcEEEEEeCC-CCCCCCCccchHHHH
Q 031201 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI----RNIEQHA-SDNVNKVLVGNKA-DMDESKRAVPTSKGQ 145 (164)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~----~~~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~ 145 (164)
+|+..++.+|..|+.++|++|+|+|.+|.+.++ .+..+ ..+.+.. ..+.|++|++||. |++.+ +..+++.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---ms~~EI~ 185 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYLA 185 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---CCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---CCHHHHH
Confidence 378899999999999999999999999875433 22222 2222222 2478999999995 77533 3333333
Q ss_pred HHHH----HhCCcEEEEeccCCC
Q 031201 146 ALAD----EYGIKFFETVMQRQI 164 (164)
Q Consensus 146 ~~~~----~~~~~~~~~Sa~~g~ 164 (164)
+... .+...++.|||+||+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGe 208 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLT 208 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCT
T ss_pred HHcCCcCCCCCEEEEEeECCCCc
Confidence 2221 134578999999986
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=4.8e-10 Score=85.21 Aligned_cols=143 Identities=18% Similarity=0.214 Sum_probs=68.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccc--eeeeEEEEEEEEE--CCEEEEEEEeeCCCcccc-----------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIEL--DGKRIKLQIWDTAGQERF----------- 77 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~d~~g~~~~----------- 77 (164)
...++++|+|++|+|||||++.|++..+...... ..+.......+.. .+....+.++|++|-...
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 3456799999999999999999998643211100 0111111122222 222236889998874321
Q ss_pred ---chhh----hhh---------cccc--cE-EEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CC
Q 031201 78 ---RTIT----TAY---------YRGA--MG-ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KR 137 (164)
Q Consensus 78 ---~~~~----~~~---------~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~ 137 (164)
...+ ..+ ..+. |+ +.++.|....-+-.+ ..+.+.+ . .++|+++|.||+|.-.. +.
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L---~-~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL---D-SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT---C-SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH---h-hCCCEEEEEcchhccchHHH
Confidence 0111 111 1122 33 445555543322112 1122222 2 47899999999997421 11
Q ss_pred ccchHHHHHHHHHhCCcEEEEec
Q 031201 138 AVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
....+.+.+-....|+++|.+|.
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHHcCCcEEecCC
Confidence 11222233323445666666653
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=4.6e-10 Score=80.85 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|+|++|+|||||+|.|++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999998843
No 214
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.95 E-value=6.2e-10 Score=80.14 Aligned_cols=91 Identities=5% Similarity=-0.047 Sum_probs=59.8
Q ss_pred CCCccccchhhhhhcccccEEEEEEECCChHHHH---HHHHHHHHHHHh-cCCCCcEEEEEeC-CCCCCCCCccchHHHH
Q 031201 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQH-ASDNVNKVLVGNK-ADMDESKRAVPTSKGQ 145 (164)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~~~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 145 (164)
.+|+..++.+|..|+.++|++|+|+|.+|.+.++ ++.++...+.+. ...+.|++|++|| .|++.+ +...++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHHH
Confidence 4578899999999999999999999999976433 332222333222 1247899999996 688633 3333332
Q ss_pred HHHH----HhCCcEEEEeccCCC
Q 031201 146 ALAD----EYGIKFFETVMQRQI 164 (164)
Q Consensus 146 ~~~~----~~~~~~~~~Sa~~g~ 164 (164)
+... .+...++.|||.||+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGe 293 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLT 293 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCT
T ss_pred HHcCCccCCCcEEEEecccCCCc
Confidence 2211 134578999999986
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=1.5e-10 Score=86.91 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=74.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC------CCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccch--------hh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------IT 81 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~--------~~ 81 (164)
.+|+++|.+|+|||||+|+|++. .......+.. +.....+.++. .+.++|+||-..... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT--TLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS--SCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe--EEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999985 2222222222 22333344443 389999999532211 11
Q ss_pred hhhc--ccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 82 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 82 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
..++ +..+.++++++.....-+..+ ..+......+.|+++++||.|... ..-.......+.+..+..+...+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL----ARLDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCE----EEEEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence 1222 567889999987421000011 012222234689999999999752 22222334445555554444333
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.84 E-value=3.5e-10 Score=84.86 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=62.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC-----CCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccccchh--------hh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSF-----TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TT 82 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--------~~ 82 (164)
.+|+++|.+|+|||||+|+|++... ........+.+.....+.++. .+.++||||-.....+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 5799999999999999999988521 111111112223333344443 2889999995322211 11
Q ss_pred hh--cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031201 83 AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (164)
Q Consensus 83 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (164)
.+ .+..+.++++++.....-+..+ ..+......+.|+++++||.|..
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCE
T ss_pred HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCcccc
Confidence 11 3567788888876321000010 01222223468999999999975
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.79 E-value=9.2e-09 Score=77.16 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=62.1
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHH----HHHH
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG----QALA 148 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~ 148 (164)
..+.|...+..+.+..+++++|+|+.+++ ..|...+..... +.|+++|+||+|+.+. ....+.. ..+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~--~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK--SVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT--TSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc--ccCHHHHHHHHHHHH
Confidence 35788888999999999999999999864 345566655554 7899999999999632 2222333 3346
Q ss_pred HHhCC---cEEEEeccCCC
Q 031201 149 DEYGI---KFFETVMQRQI 164 (164)
Q Consensus 149 ~~~~~---~~~~~Sa~~g~ 164 (164)
++.++ +++.+||++|+
T Consensus 127 ~~~g~~~~~v~~iSA~~g~ 145 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQ 145 (368)
T ss_dssp HHTTCCCSEEEECCTTTCT
T ss_pred HHcCCCcccEEEEeCCCCc
Confidence 66777 79999999984
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.64 E-value=6.8e-08 Score=75.09 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=69.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHh------cCCCCC-cc---cce-----------eeeEEEEEEEE-------------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFS------DGSFTT-SF---ITT-----------IGIDFKIRTIE------------- 58 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~------~~~~~~-~~---~~~-----------~~~~~~~~~~~------------- 58 (164)
.....|+|+|.+|+||||+++.|. +....- .. .+. .++.++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 322100 00 000 01111110000
Q ss_pred ECCEEEEEEEeeCCCccccc-hhhhh---h--cccccEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCcE-EEEEeCC
Q 031201 59 LDGKRIKLQIWDTAGQERFR-TITTA---Y--YRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNK-VLVGNKA 130 (164)
Q Consensus 59 ~~~~~~~~~l~d~~g~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~ 130 (164)
.....+.+.|+||||..... .+... . ...+|.+++|+|..... .+.. ...+... +|+ .+|+||.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~~----~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKDK----VDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHHH----HCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHhh----cCceEEEEeCC
Confidence 00023579999999965322 11111 1 12689999999997642 2222 2223221 454 7889999
Q ss_pred CCCCCCCccchHHHHHHHHHhCCcE
Q 031201 131 DMDESKRAVPTSKGQALADEYGIKF 155 (164)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (164)
|.. .... .+.......+.|+
T Consensus 251 D~~-~~~g----~~l~~~~~~g~PI 270 (504)
T 2j37_W 251 DGH-AKGG----GALSAVAATKSPI 270 (504)
T ss_dssp TSC-CCCT----HHHHHHHHHCCCE
T ss_pred ccc-cchH----HHHHHHHHhCCCe
Confidence 985 2221 1333445566665
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.61 E-value=1.9e-08 Score=75.56 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=60.0
Q ss_pred CccccchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHH----HHH
Q 031201 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALA 148 (164)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~ 148 (164)
.++.|...+..+...++++++|+|+.++++ .|...+..... +.|+++|+||+|+.+.. ...+... ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~--~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS--VKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT--CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc--cCHHHHHHHHHHHH
Confidence 467888989888899999999999999764 34444444444 78999999999996322 2223333 335
Q ss_pred HHhCC---cEEEEeccCCC
Q 031201 149 DEYGI---KFFETVMQRQI 164 (164)
Q Consensus 149 ~~~~~---~~~~~Sa~~g~ 164 (164)
+..+. +++.+||++|.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~ 147 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGI 147 (369)
T ss_dssp HTTTCCCSEEEECBTTTTB
T ss_pred HHcCCCcccEEEEECCCCC
Confidence 56676 78999999874
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=6.8e-08 Score=69.94 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=36.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCEEEEEEEeeCCCcc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 75 (164)
...++|+++|.+|+|||||+|+|.+..... ...+. .+.....+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g--~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG--ITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCC--eeeeeEEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999866332 22221 222222233333 68999999953
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.57 E-value=1.9e-08 Score=72.10 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=35.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCcc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~ 75 (164)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+. .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 6999999999999999999998765322 12222222222223333 68999999954
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.43 E-value=3e-07 Score=66.55 Aligned_cols=86 Identities=17% Similarity=0.094 Sum_probs=56.0
Q ss_pred EeeCCCcc-ccchhhhhhcccccEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHH
Q 031201 68 IWDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 144 (164)
Q Consensus 68 l~d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 144 (164)
+-..||+. .........++.+|+++.|+|+.+|.+.. .+.+++ .+.|.++|+||+|+.+. ...+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHH
Confidence 34578875 34445566789999999999999987653 333332 37899999999999731 112223
Q ss_pred HHHHHHhCCcEEEEeccCCC
Q 031201 145 QALADEYGIKFFETVMQRQI 164 (164)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~g~ 164 (164)
.++.++.+.+++.+||++|.
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~ 91 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQ 91 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCT
T ss_pred HHHHHhcCCcEEEEECCCcc
Confidence 44445567899999999874
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.30 E-value=1.5e-06 Score=65.99 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=57.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCccccee-eeEEE--EEEEEECCEEEEEEEeeCCCccccc----hhhh-hhcc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTI-GIDFK--IRTIELDGKRIKLQIWDTAGQERFR----TITT-AYYR 86 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~d~~g~~~~~----~~~~-~~~~ 86 (164)
...++|+|++|+|||||+|.+.+...+....-.. +.+.. ........ .-.+.+||.+|-.... .... .-+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999999843322111000 00100 01111111 1157899999843211 1111 1123
Q ss_pred cccEEEEEEECC--ChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 87 GAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 87 ~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
..+..++ ++.. ..... . +...+.. .+.|+++|.||.|+
T Consensus 148 ~~~~~~~-lS~G~~~kqrv-~---la~aL~~---~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI-D---IAKAISM---MKKEFYFVRTKVDS 187 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH-H---HHHHHHH---TTCEEEEEECCHHH
T ss_pred ccCCeEE-eCCCCccHHHH-H---HHHHHHh---cCCCeEEEEecCcc
Confidence 3455554 7776 33222 1 2222222 26799999999996
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.26 E-value=7.6e-07 Score=70.42 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CcccceeeeE--EEEEEEEE-CCEEEEEEEeeCCCcc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGID--FKIRTIEL-DGKRIKLQIWDTAGQE 75 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~--~~~~~~~~-~~~~~~~~l~d~~g~~ 75 (164)
....++|+|+|.+|+|||||+|+|++.... .....+.+.+ .......+ ......+.|+||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 456789999999999999999999997632 1111111111 11111111 1122478999999954
No 225
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.25 E-value=2.6e-06 Score=67.82 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGSFT 41 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~~~ 41 (164)
..|+|+|++|||||||++.+.+-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 45999999999999999999986433
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.24 E-value=4.3e-06 Score=63.93 Aligned_cols=84 Identities=18% Similarity=0.088 Sum_probs=48.5
Q ss_pred EEEEEeeCCCccccch-hh---hh--hcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRT-IT---TA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KVLVGNKADMDES 135 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~-~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~~ 135 (164)
+.+.|+|+||...... +. .. .+..+|.+++|+|...... .......+ .. .. | ..+|+||.|.. .
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~-~~~~i~gvVlnK~D~~-~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE-AVGEIGSIIVTKLDGS-A 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT-TSCSCEEEEEECSSSC-S
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh-cccCCeEEEEeCCCCc-c
Confidence 5789999999654211 11 11 1236899999999865421 11122222 22 34 5 78899999975 2
Q ss_pred CCccchHHHHHHHHHhCCcEEEEe
Q 031201 136 KRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
.. ..+..+....+.|+..++
T Consensus 253 ~~----g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 KG----GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp TT----HHHHHHHHHSSCCEEEEC
T ss_pred ch----HHHHHHHHHHCCCEEEee
Confidence 21 224456667777766553
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.17 E-value=2e-05 Score=60.24 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=50.6
Q ss_pred EEEEEeeCCCccccch-h---hhh--hcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRT-I---TTA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~-~---~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
+.+.|+||+|...... . ... .....|.+++|+|+...... ......+... -.+..+|.||.|.. ...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~-~~g 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGS-AKG 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSC-SSH
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCc-ccc
Confidence 5789999999543221 1 111 12357889999998753221 1122333322 23456889999975 221
Q ss_pred ccchHHHHHHHHHhCCcEEEEec
Q 031201 138 AVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
..+..+....+.|+..++.
T Consensus 256 ----G~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 256 ----GGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp ----HHHHHHHHTTCCCEEEEEC
T ss_pred ----cHHHHHHHHHCCCEEEEEc
Confidence 2355566678888877775
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.10 E-value=5.6e-06 Score=63.23 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=50.7
Q ss_pred EEEEEeeCCCccc--cch-h---hhhh--cccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031201 64 IKLQIWDTAGQER--FRT-I---TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (164)
Q Consensus 64 ~~~~l~d~~g~~~--~~~-~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (164)
+.+.|.|++|... ... + .... ....+.+++|+|....... ......+... -.+..+|+||.|.. .
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~---~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA---SPIGSVIITKMDGT-A 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH---CSSEEEEEECGGGC-S
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc---cCCcEEEEeccccc-c
Confidence 5688999999543 111 1 1111 1245889999998753221 1222333332 23467889999975 2
Q ss_pred CCccchHHHHHHHHHhCCcEEEEec
Q 031201 136 KRAVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
. ...+.......+.|+..++.
T Consensus 253 ~----~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 K----GGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp C----HHHHHHHHHHHTCEEEEEEC
T ss_pred c----chHHHHHHHHHCCCEEEEEC
Confidence 2 23356666778999877765
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.09 E-value=1.6e-07 Score=72.60 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=58.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCEEEEEEEeeCCCccc--cchhh--------h
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTIT--------T 82 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--~~~~~--------~ 82 (164)
....+|+++|.+|+||||+.++|...-.... .++..+..........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999976422111 11111000000000111112456899888732 22222 4
Q ss_pred hhcccccEEEEEEECCChHHHHHHHHHHHHHHHh
Q 031201 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH 116 (164)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 116 (164)
.++...++.++|+|.++. +.+....|.+.+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 455567788999999986 444555566666554
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.08 E-value=6.5e-06 Score=60.17 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=53.3
Q ss_pred hhhhhhcccccEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cchHHHHHHHHHhCCcEE
Q 031201 79 TITTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADEYGIKFF 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 156 (164)
.+.+..+.++|.+++|+|+.+|.. ...+.+++..... .++|.++|+||+||.+.... ...++..++-+..+.+.+
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 344556889999999999998753 4444445443332 26888999999999732110 012233344445688999
Q ss_pred EEeccCC
Q 031201 157 ETVMQRQ 163 (164)
Q Consensus 157 ~~Sa~~g 163 (164)
.+||++|
T Consensus 155 ~~sa~~~ 161 (307)
T 1t9h_A 155 LTSSKDQ 161 (307)
T ss_dssp ECCHHHH
T ss_pred EEecCCC
Confidence 9998765
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=4.3e-05 Score=55.63 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=51.5
Q ss_pred EEEEEeeCCCccc--cch-hhh-----hhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031201 64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE 134 (164)
Q Consensus 64 ~~~~l~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (164)
+.+.|.|+||... ... +.. .....+|.+++|.|..... ......+.+.. ..+ ..+|.||.|..
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~- 252 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT- 252 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC-
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC-
Confidence 5789999999765 322 111 1234688999999986431 11122222222 244 67888999974
Q ss_pred CCCccchHHHHHHHHHhCCcEEEEec
Q 031201 135 SKRAVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
.. ...+..+....+.|+..++.
T Consensus 253 ~~----~g~~~~~~~~~~~pi~~i~~ 274 (297)
T 1j8m_F 253 AK----GGGALSAVAATGATIKFIGT 274 (297)
T ss_dssp TT----HHHHHHHHHTTTCCEEEEEC
T ss_pred cc----hHHHHHHHHHHCcCEEEEeC
Confidence 21 23456677788888877653
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.90 E-value=6.1e-06 Score=59.02 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCCccc-cchhhhhhcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHH
Q 031201 71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 149 (164)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (164)
.||+.. ........++++|+++.|+|+.+|.+.... .+. .. +.|.++|+||+||.+. ...+...++.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~---~~~~~~~~~~~ 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADE---KTTKKWVEFFK 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCH---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCH---HHHHHHHHHHH
Confidence 477653 223456678899999999999988664321 011 11 6889999999999731 11222344455
Q ss_pred HhCCcEEEEeccCCC
Q 031201 150 EYGIKFFETVMQRQI 164 (164)
Q Consensus 150 ~~~~~~~~~Sa~~g~ 164 (164)
+.+.++ .+||++|.
T Consensus 73 ~~g~~v-~iSa~~~~ 86 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEP 86 (262)
T ss_dssp HTTCCE-EECCTTSC
T ss_pred HcCCeE-EEECCCCc
Confidence 567888 99999874
No 233
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.75 E-value=1.6e-05 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.755 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.74 E-value=3.4e-05 Score=59.17 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=23.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..+..-|.|+|++++|||+|+|.|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 45677899999999999999999986
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.67 E-value=8e-05 Score=55.52 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=47.2
Q ss_pred hcccccEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccchHHHHHHHHHhCCcEEEEeccC
Q 031201 84 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETVMQR 162 (164)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (164)
...++|.+++|... .|. +...+.+++...... ++|.+||+||+||.+.......++....-...|.+.+.+||++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46789999988665 464 344455555444333 5778999999999732110001112222335678999999998
Q ss_pred CC
Q 031201 163 QI 164 (164)
Q Consensus 163 g~ 164 (164)
|.
T Consensus 203 ~~ 204 (358)
T 2rcn_A 203 QD 204 (358)
T ss_dssp TB
T ss_pred Cc
Confidence 63
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.64 E-value=2.9e-05 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.59 E-value=3.7e-05 Score=52.55 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.++|+|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999976
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.58 E-value=4.7e-05 Score=52.11 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..--|+|+||+|+|||||++.|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3345889999999999999999863
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.56 E-value=4.3e-05 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-|+|+|++||||||+++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.55 E-value=4.3e-05 Score=51.59 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
++|+|++||||||+++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.55 E-value=4.4e-05 Score=51.48 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-.|+|+|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999885
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.53 E-value=4.9e-05 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 243
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.52 E-value=8e-05 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...|+|+|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999998865
No 244
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.49 E-value=5.8e-05 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
--++|+||+|||||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999998743
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.48 E-value=6.2e-05 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|++|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.47 E-value=7.5e-05 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
+....|+|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999998865
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.47 E-value=8.7e-05 Score=50.78 Aligned_cols=30 Identities=17% Similarity=0.019 Sum_probs=23.6
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
|.........|+|.|++||||||+++.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 333334456799999999999999999865
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.47 E-value=6.2e-05 Score=50.16 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.5
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 031201 17 KLLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~ 36 (164)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 249
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.42 E-value=7.8e-05 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998843
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.42 E-value=8.3e-05 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-|+|+||+|+||||+++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999998753
No 251
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=9e-05 Score=49.09 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..|+|+|++||||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999773
No 252
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.41 E-value=9.1e-05 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998854
No 253
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.39 E-value=0.00017 Score=49.14 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
......|+|.|++||||||+++.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999998864
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.38 E-value=0.0001 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
|+|+||+|+||+||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999763
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.37 E-value=9.2e-05 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998843
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.36 E-value=0.0001 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
..|+|+|++||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998754
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.36 E-value=0.00013 Score=49.53 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=23.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
....+...|+|.|++||||||+.+.|...
T Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 3 HEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 33445678999999999999999999875
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.36 E-value=0.00011 Score=50.26 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999763
No 259
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.36 E-value=0.00011 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
++|+|+|+|||||+|.+..|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.35 E-value=0.00011 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.35 E-value=0.00012 Score=48.29 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCcHHHHHHHH
Q 031201 16 IKLLLIGDSGVGKSCLLLRF 35 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l 35 (164)
.-|+|.|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 262
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.35 E-value=0.00012 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.34 E-value=0.00012 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.|+|+|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999865
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.34 E-value=0.00013 Score=49.98 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
....|+|+|++|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 265
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.34 E-value=0.00012 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
++|+|.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.00012 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|++||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.33 E-value=0.00013 Score=48.56 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999987
No 268
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.32 E-value=0.00012 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++|+|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.32 E-value=0.00013 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.32 E-value=0.00012 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998843
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.32 E-value=0.00013 Score=50.14 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
++|+|.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999965
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.31 E-value=0.00015 Score=51.08 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 031201 16 IKLLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~ 36 (164)
..|+|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.29 E-value=0.00013 Score=51.90 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.29 E-value=0.00015 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999884
No 275
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.29 E-value=0.00013 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998843
No 276
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.28 E-value=0.00024 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=19.1
Q ss_pred ceee-EEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIK-LLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~-i~v~G~~~~GKssl~~~l~~ 37 (164)
...| |+|+|+|||||+|.++.|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344 56789999999999999865
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.28 E-value=0.00016 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998853
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.28 E-value=0.00015 Score=49.23 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999877
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.27 E-value=0.00015 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998853
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.27 E-value=0.00015 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.27 E-value=0.00016 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
No 282
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.26 E-value=0.00016 Score=49.29 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+|+|+|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.26 E-value=0.00015 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.00018 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.25 E-value=0.00016 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.25 E-value=0.00017 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 287
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.25 E-value=0.00014 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998773
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.25 E-value=0.00013 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.25 E-value=0.00016 Score=51.20 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998853
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00017 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 291
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=0.00018 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-|++.|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999773
No 292
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.24 E-value=0.00018 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.24 E-value=0.00031 Score=48.01 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
......|+|+|++||||||+++.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344567999999999999999999874
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.23 E-value=0.00018 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...-|+|+|++||||||+++.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998866
No 295
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.23 E-value=0.00023 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.23 E-value=0.0002 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|+|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 297
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.22 E-value=0.00018 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998554
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.22 E-value=0.00024 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
...|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998764
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.22 E-value=0.0002 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998853
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.22 E-value=0.00018 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 301
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.21 E-value=0.0002 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999884
No 302
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.21 E-value=0.0006 Score=43.91 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999998774
No 303
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.21 E-value=0.0002 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999876
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.20 E-value=0.0002 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.++|+|+.||||||+++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999877
No 305
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.19 E-value=0.00024 Score=49.63 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.....|+|.|++||||||+++.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999865
No 306
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.19 E-value=0.0002 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 307
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.19 E-value=0.00023 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.18 E-value=0.0002 Score=51.20 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998853
No 309
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.00029 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=22.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
......|+|.|++||||||+++.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999999865
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.18 E-value=0.00022 Score=49.87 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 031201 17 KLLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~ 36 (164)
-++|+|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.17 E-value=0.00026 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 312
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.17 E-value=0.0002 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.17 E-value=0.00013 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=15.0
Q ss_pred eEEEEcCCCCcHHHHHHHHh-cC
Q 031201 17 KLLLIGDSGVGKSCLLLRFS-DG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~-~~ 38 (164)
-++|+|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 53
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.17 E-value=0.00031 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..++|+|.|++||||||+++.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.16 E-value=0.00032 Score=46.93 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...|++.|++||||||+++.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 316
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.16 E-value=0.00023 Score=49.01 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
++|+|.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.16 E-value=0.00032 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.....-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45567899999999999999999866
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.15 E-value=0.00027 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 319
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.15 E-value=0.00026 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.15 E-value=0.00025 Score=47.13 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.14 E-value=0.00035 Score=46.98 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...|+|.|++||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 322
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.14 E-value=0.00024 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 323
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.14 E-value=0.00027 Score=47.32 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..-++|+|++|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999873
No 324
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.13 E-value=0.00022 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999884
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.13 E-value=0.00028 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...|+|.|++||||||+++.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 326
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=0.00031 Score=51.13 Aligned_cols=25 Identities=40% Similarity=0.386 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSFT 41 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~~ 41 (164)
.++++|++|+|||||+|.+.+...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 5789999999999999999885443
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.12 E-value=0.0003 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.11 E-value=0.00025 Score=52.87 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999854
No 329
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.10 E-value=0.00035 Score=49.14 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
....|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999866
No 330
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.00094 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998763
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.00036 Score=45.91 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999866
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.08 E-value=0.00047 Score=50.67 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
....+-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998754
No 333
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.08 E-value=0.00031 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999854
No 334
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.07 E-value=0.00042 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...-|+|.|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999965
No 335
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.07 E-value=0.00038 Score=48.52 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..-.-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999999874
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.07 E-value=0.00041 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 337
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.06 E-value=0.00033 Score=49.40 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
No 338
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.06 E-value=0.00043 Score=46.16 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...|++.|++|+||||+++.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999999874
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.06 E-value=0.00033 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999999853
No 340
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.05 E-value=0.00034 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999999844
No 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.00034 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999854
No 342
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.04 E-value=0.00037 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+.|+|.|++||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 343
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.04 E-value=0.00033 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999884
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.00044 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 345
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.03 E-value=0.00036 Score=49.44 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999865
No 346
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.03 E-value=0.00057 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=21.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
......|+|.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988754
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.03 E-value=0.00018 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.++|+|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.03 E-value=0.00024 Score=51.88 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|++|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999999884
No 349
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00063 Score=45.61 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.....|++.|.+||||||+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.02 E-value=0.00038 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998843
No 351
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.02 E-value=0.00038 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999998844
No 352
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.02 E-value=0.00027 Score=46.04 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 353
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.02 E-value=0.00037 Score=50.73 Aligned_cols=22 Identities=50% Similarity=0.792 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999998 54
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.02 E-value=0.00049 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.....|+|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998876
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.02 E-value=0.00037 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999999854
No 356
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.02 E-value=0.00011 Score=53.59 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998754
No 357
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.01 E-value=0.00054 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=21.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
....-|+|+|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.00 E-value=0.00048 Score=48.65 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.....+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 334557899999999999999998865
No 359
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.00043 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
......|+++|++||||||+++.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999865
No 360
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.00 E-value=0.00043 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 361
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.98 E-value=0.00045 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 362
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.00047 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988763
No 363
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.97 E-value=0.00039 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|+|++||||||+++.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 364
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.97 E-value=0.00085 Score=48.28 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
....+.|+|.|++||||||+++.|..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999863
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00068 Score=45.40 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 366
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.96 E-value=0.00043 Score=51.59 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.++|+|+.||||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 367
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.95 E-value=0.00031 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999854
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.94 E-value=0.00047 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.|+|+|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999865
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.94 E-value=0.00052 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 370
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.93 E-value=0.0005 Score=49.23 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999874
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.93 E-value=0.0006 Score=46.25 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..|+|.|++||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.93 E-value=0.00058 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHh
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~ 36 (164)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 373
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.92 E-value=0.0005 Score=45.98 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 374
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.91 E-value=0.0005 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999873
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.00059 Score=45.80 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999866
No 376
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.90 E-value=0.0005 Score=51.86 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999873
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00058 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 378
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.89 E-value=0.00067 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...+.|+|++|+|||||++++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999865
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.89 E-value=0.00062 Score=44.90 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 380
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.00051 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|||||||++.+.+--
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.88 E-value=0.00058 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..--++++|+.|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999866
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.88 E-value=0.00061 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-|+|.|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998763
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.87 E-value=0.00053 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-.++|+|+.|||||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998843
No 384
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.00061 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..+++.|++|+|||++++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999987
No 385
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.86 E-value=0.00063 Score=46.91 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-++|+|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.85 E-value=0.00023 Score=48.74 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 387
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.84 E-value=0.00031 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999854
No 388
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.84 E-value=0.00071 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...|+|.|++||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.83 E-value=0.00067 Score=50.00 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=70.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCccc---------------------ceeeeEEEEEEEEEC-----------
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI---------------------TTIGIDFKIRTIELD----------- 60 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~----------- 60 (164)
+..--++++|++|+||||+++.+.+.-.+.... ...++.+.......+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345679999999999999999987621110000 000000100000000
Q ss_pred --CEEEEEEEeeCCCccccchh-hhh-----hcccccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031201 61 --GKRIKLQIWDTAGQERFRTI-TTA-----YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (164)
Q Consensus 61 --~~~~~~~l~d~~g~~~~~~~-~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (164)
.....+.+.|++|....... ... ..-..|-.+++.|..... .+......+..... .-.+++||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCC
Confidence 00124567899986432211 111 111367788899976532 22233333333222 23677899996
Q ss_pred CCCCCccchHHHHHHHHHhCCcEEEEe
Q 031201 133 DESKRAVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (164)
. .. .-.+.......+.|+..++
T Consensus 281 ~-a~----~G~~l~~~~~~~~pi~~i~ 302 (328)
T 3e70_C 281 D-AR----GGAALSISYVIDAPILFVG 302 (328)
T ss_dssp C-SC----CHHHHHHHHHHTCCEEEEE
T ss_pred c-cc----hhHHHHHHHHHCCCEEEEe
Confidence 3 22 2335667777888877766
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.82 E-value=0.00085 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|.+||||||+++.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.82 E-value=0.0007 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.++|+|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999977
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.00094 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...|++.|++||||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 393
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.81 E-value=0.00087 Score=44.11 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999855
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.81 E-value=0.00097 Score=45.85 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+.|+|.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 395
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.00061 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-.++|+|+.|||||||++.|++-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 368999999999999999998843
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.80 E-value=0.00076 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999855
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.78 E-value=0.00056 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=15.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 398
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.78 E-value=0.00086 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.++|.|++|+|||++++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 399
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.77 E-value=0.00063 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.++|.|++|+|||++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999998866
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.76 E-value=0.0009 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999864
No 401
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.75 E-value=0.00078 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-++|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 402
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.74 E-value=0.0038 Score=47.89 Aligned_cols=64 Identities=25% Similarity=0.268 Sum_probs=40.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc------------------CCCCC---cccceeeeEEEEEEE--EE-CCEEEEEE
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSD------------------GSFTT---SFITTIGIDFKIRTI--EL-DGKRIKLQ 67 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~------------------~~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~~ 67 (164)
.+...=|.|+|+.++|||+|+|.|+. ..|.. ...-|.++-.....+ .. ++..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45677788999999999999996641 12221 122233333322222 22 56678999
Q ss_pred EeeCCCcc
Q 031201 68 IWDTAGQE 75 (164)
Q Consensus 68 l~d~~g~~ 75 (164)
+.||.|..
T Consensus 144 llDTEG~~ 151 (457)
T 4ido_A 144 LMDTQGTF 151 (457)
T ss_dssp EEEECCBT
T ss_pred EEeccCCC
Confidence 99999943
No 403
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.73 E-value=0.00098 Score=42.97 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
...|++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999998743
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.73 E-value=0.001 Score=45.12 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.72 E-value=0.00088 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 406
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.72 E-value=0.00082 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998773
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.00096 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999987
No 408
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.70 E-value=0.00087 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.||||||+++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999998843
No 409
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.70 E-value=0.0013 Score=44.60 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-...+.|++.|.+||||||+.+.|...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 356788999999999999999998654
No 410
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.70 E-value=0.00077 Score=46.34 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+++.||||+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988876
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.70 E-value=0.00096 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
+++|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.68 E-value=0.00099 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..--|+++|+.|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345689999999999999999866
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.68 E-value=0.0011 Score=46.19 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999884
No 414
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.67 E-value=0.001 Score=47.95 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 415
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999977
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.65 E-value=0.0011 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..-|+|.|++|+||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.64 E-value=0.0011 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..--|+|+|++|+|||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345689999999999999999865
No 418
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.63 E-value=0.0011 Score=47.78 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|.|++||||||+++.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 419
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.63 E-value=0.0018 Score=45.22 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998763
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.0011 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-.+++.|++|+|||++++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999774
No 421
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.61 E-value=0.0012 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-.|++.|++|+|||++++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999873
No 422
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.60 E-value=0.00086 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.--++|+|+.|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4467899999999999999999753
No 423
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.59 E-value=0.0015 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
..-+++.|++|+|||++++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345777899999999999999763
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.59 E-value=0.0013 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998843
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.58 E-value=0.0015 Score=42.41 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031201 18 LLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~ 36 (164)
.+|+|+.|+||||+++++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999874
No 426
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.57 E-value=0.0016 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=20.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999986654
No 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.56 E-value=0.0013 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998853
No 428
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0013 Score=50.14 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
--|++.||||+|||+|++++.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999987
No 429
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.56 E-value=0.0014 Score=45.09 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.56 E-value=0.0013 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 431
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0013 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..-.|++.||||+|||+|++++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 432
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.53 E-value=0.0014 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999866
No 433
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.53 E-value=0.0022 Score=45.58 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45568999999999999999999874
No 434
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.52 E-value=0.0017 Score=43.71 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
++|+|+++||||+|+..+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0014 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998843
No 436
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.51 E-value=0.0017 Score=45.37 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=20.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...+++.|+|++||||||+++.|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998855
No 437
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.51 E-value=0.0023 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999998773
No 438
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0015 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.--|++.||||+|||+|++++.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999987
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.49 E-value=0.0018 Score=45.14 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 11 DYDCLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.......|+|+|++||||||+.+.|..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344556899999999999999998865
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.46 E-value=0.0015 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998843
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.46 E-value=0.0016 Score=46.66 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0017 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998843
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.45 E-value=0.0016 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999876
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.44 E-value=0.0018 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998843
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.43 E-value=0.0029 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
...-|+++|++||||||+++.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999999763
No 446
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.42 E-value=0.013 Score=42.69 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999764
No 447
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0018 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.--|++.||||+|||.|++++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 34699999999999999999987
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.41 E-value=0.0022 Score=43.49 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 449
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.40 E-value=0.0018 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999999874
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.40 E-value=0.0027 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999987754
No 451
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.39 E-value=0.002 Score=46.42 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.36 E-value=0.0015 Score=46.30 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 13 ~~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+...|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999998763
No 453
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.35 E-value=0.0023 Score=43.73 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
..|+|+|++|+|||+|+..|..+-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998754
No 454
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.34 E-value=0.0031 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
...|++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999773
No 455
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.34 E-value=0.0016 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58899999999999999998843
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.33 E-value=0.0022 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++|+|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998843
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.32 E-value=0.0023 Score=47.80 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031201 18 LLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~ 36 (164)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999976
No 458
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.30 E-value=0.0021 Score=47.55 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.++|.|++|+|||+|++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999877
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.0029 Score=49.72 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
.++|+|+.|||||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998543
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.29 E-value=0.0033 Score=49.36 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998543
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0019 Score=47.59 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031201 18 LLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~ 37 (164)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999877
No 462
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.28 E-value=0.0019 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.++++|++|+|||||++.+.+--
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998843
No 463
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.0025 Score=44.36 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-++|.|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 464
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0025 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.--|++.||||+|||.|++++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHH
Confidence 34699999999999999999987
No 465
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.26 E-value=0.0024 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998774
No 466
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.23 E-value=0.0027 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++|.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 467
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.23 E-value=0.0011 Score=46.98 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999976
No 468
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.22 E-value=0.0038 Score=49.77 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~~~ 40 (164)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998543
No 469
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.20 E-value=0.0026 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-+.|+|++|+|||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.20 E-value=0.0016 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999998884
No 471
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.18 E-value=0.0027 Score=46.03 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=46.1
Q ss_pred EEEEEeeCCCccccch-hh---hhhcc--cccEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 031201 64 IKLQIWDTAGQERFRT-IT---TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (164)
..+.|.|++|...... .. ...+. ..+..++|+|.+.. ...+..+.+.+.. -+. .-+|.||.|.. ..
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~~-~giVltk~D~~-~~- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VPV-NQYIFTKIDET-TS- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SCC-CEEEEECTTTC-SC-
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CCC-CEEEEeCCCcc-cc-
Confidence 4789999999654322 11 12222 35677888887642 2233333332221 122 34566999975 22
Q ss_pred ccchHHHHHHHHHhCCcEEEEe
Q 031201 138 AVPTSKGQALADEYGIKFFETV 159 (164)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (164)
...+.......++|+..++
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2256667777787765443
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0029 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDGSFT 41 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~~~~ 41 (164)
++|+|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 699999999999999999985433
No 473
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.17 E-value=0.0029 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-.|++.|++|+|||++++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999873
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.16 E-value=0.0032 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999876
No 475
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0026 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
..--|++.||||+|||+|++++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh
Confidence 344799999999999999999987
No 476
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.14 E-value=0.0033 Score=45.87 Aligned_cols=85 Identities=24% Similarity=0.188 Sum_probs=47.5
Q ss_pred EEEEEeeCCCccccchhh-------hhh-----cccccEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 031201 64 IKLQIWDTAGQERFRTIT-------TAY-----YRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130 (164)
Q Consensus 64 ~~~~l~d~~g~~~~~~~~-------~~~-----~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (164)
..+.|.|+||........ ... -...+.+++|.|.... +....+. .+.... ++ .-+|.||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~----~~~~~~--~i-~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAK----IFKEAV--NV-TGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHH----HHHHHS--CC-CEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHH----HHHhcC--CC-CEEEEeCC
Confidence 358899999963322211 111 1246788899998643 2233332 232221 22 34567999
Q ss_pred CCCCCCCccchHHHHHHHHHhCCcEEEEec
Q 031201 131 DMDESKRAVPTSKGQALADEYGIKFFETVM 160 (164)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (164)
|-. ... -.+..+....+.|+..++.
T Consensus 260 D~~-~~g----G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 260 DGT-AKG----GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GGC-SCT----THHHHHHHHHCCCEEEEEC
T ss_pred CCc-cch----HHHHHHHHHHCCCEEEEeC
Confidence 964 222 2367788888888766643
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.13 E-value=0.0022 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.0033 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999876
No 479
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.13 E-value=0.0032 Score=46.74 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
....|++.|++|+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999874
No 480
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.12 E-value=0.003 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.0032 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998763
No 482
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.11 E-value=0.0031 Score=49.62 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.++++|++|+|||||++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 483
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.09 E-value=0.0029 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.++|.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 484
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.09 E-value=0.0032 Score=49.01 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031201 18 LLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~~~ 38 (164)
++++|++|+|||+|++.+.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.09 E-value=0.0036 Score=44.27 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
..|+|.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999998753
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.09 E-value=0.0039 Score=45.69 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999764
No 487
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.07 E-value=0.0035 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
-|+++|++|+|||+|++.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999987
No 488
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.06 E-value=0.0042 Score=42.45 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031201 18 LLLIGDSGVGKSCLLLRFS 36 (164)
Q Consensus 18 i~v~G~~~~GKssl~~~l~ 36 (164)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999863
No 489
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.06 E-value=0.004 Score=45.37 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 490
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.05 E-value=0.002 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=16.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998754
No 491
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.04 E-value=0.0037 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 14 ~~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
....|++.|++|+|||++++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999763
No 492
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.03 E-value=0.0038 Score=46.55 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999873
No 493
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.02 E-value=0.0037 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 494
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.00 E-value=0.0037 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988663
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.99 E-value=0.0045 Score=41.36 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~~~ 39 (164)
.-|++.|++|+||||++-.|..+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999998753
No 496
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.93 E-value=0.005 Score=45.06 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031201 17 KLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~~ 38 (164)
-|+|+||.|+|||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 497
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.92 E-value=0.003 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031201 17 KLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 17 ~i~v~G~~~~GKssl~~~l~~ 37 (164)
.+++.|++|+|||++++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 699999999999999999876
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.92 E-value=0.0046 Score=42.35 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
+.|+|.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 499
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.0043 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031201 16 IKLLLIGDSGVGKSCLLLRFSD 37 (164)
Q Consensus 16 ~~i~v~G~~~~GKssl~~~l~~ 37 (164)
-.++|.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 500
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.91 E-value=0.0044 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031201 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (164)
Q Consensus 15 ~~~i~v~G~~~~GKssl~~~l~~~ 38 (164)
.-.|++.|++|+|||+|++.+...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
Done!