BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031202
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 11/149 (7%)
Query: 14 SPNSKAALRWAADNLI--DSGDL-IILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREIN 70
S + K A W + ++ ++ D I+L+HVQ + D F+D S E+FR+
Sbjct: 24 SISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG-----FDDVDSIYASPEDFRD-- 76
Query: 71 FSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL 130
+Q +L+ G A + GDP++ +C V+ ++ D LVVGSRGL
Sbjct: 77 -XRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL 135
Query: 131 GALKRVLLGSVSNHVVTNSSCPVTVVKGN 159
G ++V +G+VS V ++ CPV +K N
Sbjct: 136 GRFQKVFVGTVSAFCVKHAECPVXTIKRN 164
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLE 64
+T+ + D S +++ A A G +I++H P D+ + FE+ L
Sbjct: 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEA---LRRRL 59
Query: 65 EFREINFSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLV 124
E E + LT P K A + G P E + A K D +V
Sbjct: 60 ERAEGVLEEARALTGVP---------------KEDALLLEGVPAEAILQAARAEKADLIV 104
Query: 125 VGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
+G+RGLGAL + LGS S VV + CPV +V+
Sbjct: 105 MGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 95 GAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154
G KV + G P E++ ED +D +++GS G LK +LLGSV+ +V+ S+ PV
Sbjct: 96 GFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVL 155
Query: 155 VVK 157
VVK
Sbjct: 156 VVK 158
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
WG+PRE++ E +D +VVGS G L +LLGS +N V+ + C V V+
Sbjct: 94 WGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
WG+PRE++ E +D +VVGS G L +LLGS +N V+ + C V V+
Sbjct: 94 WGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 96 AKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155
A+V+ GDP ++ A E+ + GSRG K++LLGSVS V+ +S PV +
Sbjct: 102 AEVIKPFPAGDPVVEIIKASENYSF--IAXGSRGASKFKKILLGSVSEGVLHDSKVPVYI 159
Query: 156 VKGNPV 161
K + V
Sbjct: 160 FKHDXV 165
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSN 143
L + + + +G +V + G P + + E++ T+ GSRG G++ +LGS S
Sbjct: 216 LRVXEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFXGSRGAGSVXTXILGSTSE 275
Query: 144 HVVTNSSCPVTVVK 157
V+ S PV V K
Sbjct: 276 SVIRRSPVPVFVCK 289
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 18/119 (15%)
Query: 56 TGSPLVPLEEFREINFSKQYGLTSNPEVLDILD-----------TLSRTKGA-------K 97
TG+ L L F+ + + + PE LDI D ++T+ K
Sbjct: 29 TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADK 88
Query: 98 VVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156
V A V G P + + D +V+G++G K +LLGSV+ V ++ CPV VV
Sbjct: 89 VRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 9 VGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFRE 68
VG+D+SP ++ A+RWAA + + L+H P E P V
Sbjct: 24 VGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEV----ATWLEVPLPPGV------- 72
Query: 69 INFSKQYGLTSNPEVLDILDTLSRTKGAKVV-AKVYWGDPREKLCDAVEDLKLDTLVVGS 127
+ + + +G + L +++ S G V +++ L D +D L +VVG
Sbjct: 73 LRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSKDAVL--MVVGC 130
Query: 128 RGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
G G LLGSVS+ ++ ++ CPV ++
Sbjct: 131 LGSGRWPGRLLGSVSSGLLRHAHCPVVIIH 160
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
P +L E+ +L +VVGSRG G +L+GSV V + PV V +
Sbjct: 256 QPARQLVQRSEEAQL--VVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR 305
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPL 60
+S +TV VG D S +S A+ AA LII P + D + +D
Sbjct: 14 LSAYKTVVVGTDGSDSSXRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKD----- 68
Query: 61 VPLEEFREINFSKQYGLTSNPEVLDIL-DTLSRTK--GAK-VVAKVYWGDPREKLCDAVE 116
+ Y +T + +IL D R GAK V + G P + L + +
Sbjct: 69 ------------ESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLAD 116
Query: 117 DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156
+ K D LVVG+ GL + LLGSV +V + V +V
Sbjct: 117 EEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 9 VGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFRE 68
VG+D+SP ++ A+RWAA + + L+H P E P V
Sbjct: 12 VGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEV----ATWLEVPLPPGV------- 60
Query: 69 INFSKQYGLTSNPEVLDILDTLSRTKGAKVV-AKVYWGDPREKLCDAVEDLKLDTLVVGS 127
+ + + +G + L +++ S G V +++ L D +D L VVG
Sbjct: 61 LRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDXSKDAVL--XVVGC 118
Query: 128 RGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
G G LLGSVS+ ++ ++ CPV ++
Sbjct: 119 LGSGRWPGRLLGSVSSGLLRHAHCPVVIIH 148
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 107 PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
P +L E+ +L +VVGSRG G L+GSV V + PV V +
Sbjct: 245 PARQLVQRSEEAQL--VVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVAR 293
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 90 LSRTKGAKVVAKVYWGDPREKLCD-AVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN 148
++ T + ++ +G P+ + D A + ++D +V+G+ G + RV +GS +++VV +
Sbjct: 78 VATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDH 137
Query: 149 SSCPVTVVK 157
+ C V V++
Sbjct: 138 APCNVIVIR 146
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 92 RTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSC 151
R K + + + +G P +++ E+ + +++ SRG +L LGS V+ +
Sbjct: 92 RAKNVRTI--IRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKK 149
Query: 152 PVTVVK 157
PV ++K
Sbjct: 150 PVLIIK 155
>pdb|3QTB|A Chain A, Structure Of The Universal Stress Protein From
Archaeoglobus Fulgidus In Complex With Damp
pdb|3QTB|B Chain B, Structure Of The Universal Stress Protein From
Archaeoglobus Fulgidus In Complex With Damp
Length = 155
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 76 GLTSNPEVLDILDTLS------RTKGAKVVAK--VYWGDPREKLCDAVEDLKLDTLVVGS 127
G T + ++++ +TLS R +GA+ V +P + + D +++ +V+G
Sbjct: 66 GRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGI 125
Query: 128 RGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
R +++ GSV+ V+ ++ PV +K
Sbjct: 126 RKRSPTGKLIFGSVARDVILKANKPVICIK 155
>pdb|3DLO|A Chain A, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|B Chain B, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|C Chain C, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|D Chain D, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
Length = 155
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 76 GLTSNPEVLDILDTLS------RTKGAKVVAK--VYWGDPREKLCDAVEDLKLDTLVVGS 127
G T + ++++ +TLS R +GA+ V +P + + D +++ +V+G
Sbjct: 66 GRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGI 125
Query: 128 RGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
R +++ GSV+ V+ ++ PV +K
Sbjct: 126 RKRSPTGKLIFGSVARDVILKANKPVICIK 155
>pdb|1VR5|A Chain A, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
pdb|1VR5|B Chain B, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
Length = 547
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 68 EINFSKQYGLTSNPEVLDILDTLSRT----KGAKVVAKV 102
E ++S +G +NPEV +LD L+R+ K +VVAK+
Sbjct: 448 EYSYSGNFGKYANPEVETLLDELNRSNDDAKIKEVVAKL 486
>pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase
pdb|1IY8|B Chain B, Crystal Structure Of Levodione Reductase
pdb|1IY8|C Chain C, Crystal Structure Of Levodione Reductase
pdb|1IY8|D Chain D, Crystal Structure Of Levodione Reductase
pdb|1IY8|E Chain E, Crystal Structure Of Levodione Reductase
pdb|1IY8|F Chain F, Crystal Structure Of Levodione Reductase
pdb|1IY8|G Chain G, Crystal Structure Of Levodione Reductase
pdb|1IY8|H Chain H, Crystal Structure Of Levodione Reductase
Length = 267
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 43 PNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTL 90
P +++ KQL D +P EEF ++N SK+YG PE+ ++ L
Sbjct: 201 PMVENSMKQL--DPENPRKAAEEFIQVNPSKRYG--EAPEIAAVVAFL 244
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 102 VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
V G P++K+ + L D +++ S + LLGS + VV ++ C V VV+
Sbjct: 90 VAEGSPKDKILALAKSLPADLVIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 102 VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157
V G P++K+ + L D +++ S + LLGS + VV ++ C V VV+
Sbjct: 89 VAEGSPKDKILALAKSLPADLVIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|3SXN|A Chain A, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|B Chain B, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|C Chain C, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|D Chain D, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|E Chain E, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|F Chain F, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
Length = 422
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALK 134
VLD+ D R+ G + ++ G R DA D+++D V+G LGA +
Sbjct: 335 VLDVADGF-RSDGGRFALQISGGRARCTTTDAPADIEIDLDVLGGLYLGAHR 385
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 29/94 (30%)
Query: 62 PLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAKVVA----KVYWGDP---------- 107
PLEE RE + + +D + G K+VA V G P
Sbjct: 285 PLEEMRE-----------SRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKV 333
Query: 108 REKLCDAVEDLKLDT----LVVGSRGLGALKRVL 137
RE++ +ED+K+DT +VV + LG+L+ V+
Sbjct: 334 REEILSEIEDIKIDTDEAGVVVKADTLGSLEAVV 367
>pdb|1GEF|A Chain A, Crystal Structure Of The Archaeal Holliday Junction
Resolvase Hjc
pdb|1GEF|B Chain B, Crystal Structure Of The Archaeal Holliday Junction
Resolvase Hjc
pdb|1GEF|D Chain D, Crystal Structure Of The Archaeal Holliday Junction
Resolvase Hjc
pdb|1GEF|E Chain E, Crystal Structure Of The Archaeal Holliday Junction
Resolvase Hjc
pdb|1IPI|A Chain A, Crystal Structure Of The Archaeal Holliday Junction
Resolvase Hjc From Pyrococcus Furiosus Form Ii
pdb|1IPI|B Chain B, Crystal Structure Of The Archaeal Holliday Junction
Resolvase Hjc From Pyrococcus Furiosus Form Ii
Length = 123
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 76 GLTSNPEVLDILD----TLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131
G + E++ +L+ + R+ G+K V V G+ ++ LC V+ K D L VG R +G
Sbjct: 5 GAQAERELIKLLEKHGFAVVRSAGSKKVDLVA-GNGKKYLCIEVKVTKKDHLYVGKRDMG 63
Query: 132 AL 133
L
Sbjct: 64 RL 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,909,855
Number of Sequences: 62578
Number of extensions: 195941
Number of successful extensions: 459
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 27
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)