Query 031202
Match_columns 164
No_of_seqs 107 out of 1796
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15005 universal stress prot 100.0 2.1E-27 4.6E-32 155.8 14.2 141 4-157 2-144 (144)
2 PRK15456 universal stress prot 100.0 1E-27 2.3E-32 157.0 12.5 140 3-157 1-142 (142)
3 PRK09982 universal stress prot 99.9 2.8E-27 6E-32 155.0 10.5 141 2-160 1-141 (142)
4 cd01989 STK_N The N-terminal d 99.9 1.7E-26 3.7E-31 151.8 13.6 141 6-158 1-145 (146)
5 PRK15118 universal stress glob 99.9 1.5E-26 3.2E-31 151.9 11.3 139 2-159 1-140 (144)
6 PF00582 Usp: Universal stress 99.9 7E-26 1.5E-30 146.8 11.4 140 3-157 1-140 (140)
7 PRK10116 universal stress prot 99.9 1.6E-25 3.6E-30 146.5 11.9 139 2-159 1-140 (142)
8 cd01988 Na_H_Antiporter_C The 99.9 1.7E-24 3.8E-29 139.8 12.9 131 6-157 1-132 (132)
9 PRK11175 universal stress prot 99.9 9.4E-25 2E-29 159.6 12.1 147 2-160 1-148 (305)
10 cd01987 USP_OKCHK USP domain i 99.9 5.4E-24 1.2E-28 136.3 11.2 123 6-157 1-124 (124)
11 PRK11175 universal stress prot 99.9 1.2E-21 2.7E-26 143.1 13.2 143 3-160 151-302 (305)
12 cd00293 USP_Like Usp: Universa 99.9 5.1E-21 1.1E-25 122.6 12.7 130 6-156 1-130 (130)
13 COG0589 UspA Universal stress 99.9 4.8E-20 1E-24 121.6 14.6 148 2-159 3-153 (154)
14 PRK12652 putative monovalent c 99.7 4.8E-17 1E-21 120.0 12.6 131 1-155 2-148 (357)
15 PRK10490 sensor protein KdpD; 99.6 1.4E-13 3E-18 113.2 14.1 124 5-159 251-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.5 3.4E-13 7.3E-18 106.5 12.1 127 5-160 249-376 (890)
17 cd01984 AANH_like Adenine nucl 98.8 3.2E-08 7E-13 59.0 7.3 84 7-155 1-85 (86)
18 PLN03159 cation/H(+) antiporte 98.3 3.7E-05 7.9E-10 63.7 13.3 145 5-159 459-616 (832)
19 TIGR02432 lysidine_TilS_N tRNA 97.8 0.00065 1.4E-08 46.4 10.7 93 6-130 1-110 (189)
20 PF01171 ATP_bind_3: PP-loop f 97.7 0.0017 3.7E-08 44.1 11.7 92 6-129 1-106 (182)
21 cd01992 PP-ATPase N-terminal d 97.5 0.0036 7.9E-08 42.5 10.8 92 6-129 1-106 (185)
22 PLN03159 cation/H(+) antiporte 97.5 0.0018 4E-08 53.9 10.6 41 4-44 630-670 (832)
23 cd01993 Alpha_ANH_like_II This 97.0 0.023 4.9E-07 38.5 10.8 92 6-129 1-116 (185)
24 PRK12342 hypothetical protein; 96.9 0.011 2.3E-07 42.5 8.3 104 13-154 33-140 (254)
25 PRK03359 putative electron tra 96.7 0.02 4.4E-07 41.1 8.6 105 13-154 34-143 (256)
26 COG0037 MesJ tRNA(Ile)-lysidin 96.7 0.052 1.1E-06 39.7 10.9 93 5-131 22-132 (298)
27 PF01012 ETF: Electron transfe 96.3 0.13 2.7E-06 34.3 10.2 88 6-130 1-101 (164)
28 COG2086 FixA Electron transfer 96.1 0.061 1.3E-06 38.7 8.3 105 12-155 34-143 (260)
29 PRK10696 tRNA 2-thiocytidine b 96.1 0.22 4.8E-06 35.9 11.1 90 5-129 30-141 (258)
30 PRK10660 tilS tRNA(Ile)-lysidi 95.9 0.2 4.3E-06 39.0 10.6 66 4-101 15-81 (436)
31 PRK05253 sulfate adenylyltrans 95.7 0.27 5.9E-06 36.3 10.1 92 4-129 27-137 (301)
32 PF00448 SRP54: SRP54-type pro 95.1 0.44 9.6E-06 32.9 9.4 91 7-134 5-98 (196)
33 PRK07313 phosphopantothenoylcy 95.1 0.062 1.3E-06 36.6 4.9 35 4-39 1-35 (182)
34 TIGR00268 conserved hypothetic 94.9 0.74 1.6E-05 33.1 10.2 37 3-43 11-47 (252)
35 cd01995 ExsB ExsB is a transcr 94.8 0.73 1.6E-05 30.7 10.0 87 6-130 1-87 (169)
36 TIGR00591 phr2 photolyase PhrI 94.8 0.19 4.1E-06 39.3 7.6 86 17-128 37-122 (454)
37 PRK13820 argininosuccinate syn 94.8 1.1 2.4E-05 34.4 11.3 37 4-43 2-39 (394)
38 cd01985 ETF The electron trans 94.4 0.73 1.6E-05 31.2 8.8 37 6-43 1-46 (181)
39 PRK14665 mnmA tRNA-specific 2- 94.3 1.8 3.9E-05 32.9 12.4 92 3-130 4-124 (360)
40 COG1927 Mtd Coenzyme F420-depe 94.2 0.48 1E-05 32.9 7.4 69 87-160 23-97 (277)
41 cd01990 Alpha_ANH_like_I This 94.0 1.4 2.9E-05 30.4 9.7 86 7-129 1-105 (202)
42 TIGR02039 CysD sulfate adenyly 94.0 1.5 3.3E-05 32.3 10.2 91 4-128 19-128 (294)
43 COG0041 PurE Phosphoribosylcar 93.8 0.68 1.5E-05 30.5 7.2 70 83-160 17-90 (162)
44 cd01713 PAPS_reductase This do 93.8 1.2 2.7E-05 29.2 9.9 38 6-44 1-38 (173)
45 TIGR02113 coaC_strep phosphopa 93.4 0.3 6.5E-06 33.2 5.5 34 5-39 1-34 (177)
46 TIGR02852 spore_dpaB dipicolin 93.3 0.31 6.7E-06 33.4 5.4 34 5-39 1-35 (187)
47 KOG1650 Predicted K+/H+-antipo 93.3 0.71 1.5E-05 38.6 8.3 42 5-46 615-656 (769)
48 TIGR01162 purE phosphoribosyla 93.2 0.94 2E-05 30.0 7.3 71 82-160 12-86 (156)
49 PRK10867 signal recognition pa 93.0 2.5 5.5E-05 33.0 10.5 91 8-134 105-198 (433)
50 PRK05579 bifunctional phosphop 92.7 0.47 1E-05 36.5 6.1 38 1-39 3-40 (399)
51 PF00875 DNA_photolyase: DNA p 92.0 0.37 8E-06 32.1 4.5 111 19-158 15-125 (165)
52 PRK00779 ornithine carbamoyltr 92.0 2.4 5.3E-05 31.4 9.0 42 105-156 85-126 (304)
53 COG0299 PurN Folate-dependent 92.0 2.9 6.3E-05 28.8 10.2 82 5-127 1-87 (200)
54 PRK08305 spoVFB dipicolinate s 91.8 0.55 1.2E-05 32.4 5.1 37 2-39 3-40 (196)
55 PRK12563 sulfate adenylyltrans 91.8 3.9 8.4E-05 30.5 9.7 43 4-46 37-79 (312)
56 PF02601 Exonuc_VII_L: Exonucl 91.3 0.69 1.5E-05 34.4 5.7 55 102-156 50-113 (319)
57 PF00731 AIRC: AIR carboxylase 91.2 1.2 2.5E-05 29.5 5.9 72 81-160 13-88 (150)
58 TIGR00342 thiazole biosynthesi 91.1 5.6 0.00012 30.4 11.0 37 4-44 172-208 (371)
59 TIGR00959 ffh signal recogniti 91.1 5.8 0.00012 31.0 10.5 90 8-133 104-196 (428)
60 PRK00994 F420-dependent methyl 90.7 2.3 5.1E-05 30.2 7.3 71 87-162 23-99 (277)
61 PLN00200 argininosuccinate syn 90.7 6.6 0.00014 30.4 11.9 37 4-43 5-41 (404)
62 PRK13982 bifunctional SbtC-lik 90.5 1.5 3.2E-05 34.6 6.9 35 4-39 70-104 (475)
63 cd01986 Alpha_ANH_like Adenine 90.5 2.6 5.6E-05 25.5 7.9 34 7-44 1-34 (103)
64 TIGR01425 SRP54_euk signal rec 90.4 6.5 0.00014 30.7 10.2 93 8-137 105-200 (429)
65 TIGR00032 argG argininosuccina 90.1 7.3 0.00016 30.1 10.6 34 6-43 1-34 (394)
66 TIGR03556 photolyase_8HDF deox 89.8 1.5 3.2E-05 34.6 6.5 85 17-128 15-99 (471)
67 COG0541 Ffh Signal recognition 89.8 8.1 0.00018 30.2 10.2 95 7-138 104-201 (451)
68 TIGR00884 guaA_Cterm GMP synth 89.6 7 0.00015 29.1 10.4 37 5-44 17-53 (311)
69 PRK00143 mnmA tRNA-specific 2- 89.3 7.9 0.00017 29.3 10.6 35 5-43 1-35 (346)
70 cd01712 ThiI ThiI is required 89.2 5 0.00011 26.9 10.5 35 6-44 1-35 (177)
71 cd01994 Alpha_ANH_like_IV This 89.1 5.3 0.00012 27.5 8.1 91 6-129 1-98 (194)
72 PRK09590 celB cellobiose phosp 88.3 1.1 2.3E-05 27.7 3.9 69 82-159 16-84 (104)
73 TIGR02765 crypto_DASH cryptoch 88.3 2.7 5.8E-05 32.7 7.0 47 80-128 59-105 (429)
74 PRK06029 3-octaprenyl-4-hydrox 87.7 1.5 3.2E-05 30.1 4.6 36 4-39 1-36 (185)
75 PF12683 DUF3798: Protein of u 87.1 4.4 9.5E-05 29.4 6.8 92 6-130 4-97 (275)
76 PRK00074 guaA GMP synthase; Re 86.8 15 0.00032 29.5 10.3 37 5-44 216-252 (511)
77 PRK08576 hypothetical protein; 86.5 11 0.00024 29.6 9.2 34 6-43 236-269 (438)
78 TIGR02699 archaeo_AfpA archaeo 86.3 4.1 8.9E-05 27.6 6.1 33 6-38 1-34 (174)
79 PRK06027 purU formyltetrahydro 85.9 12 0.00025 27.6 9.9 40 90-129 132-175 (286)
80 TIGR00521 coaBC_dfp phosphopan 85.9 9.4 0.0002 29.5 8.6 35 4-39 3-37 (390)
81 cd05565 PTS_IIB_lactose PTS_II 85.4 1.8 3.9E-05 26.4 3.7 67 81-158 14-80 (99)
82 TIGR00853 pts-lac PTS system, 85.3 1.8 4E-05 26.1 3.7 66 83-159 19-84 (95)
83 PRK00286 xseA exodeoxyribonucl 85.2 2.8 6.1E-05 32.7 5.6 55 102-156 171-230 (438)
84 cd01997 GMP_synthase_C The C-t 85.2 13 0.00028 27.5 10.4 36 6-44 1-36 (295)
85 PF02844 GARS_N: Phosphoribosy 84.7 0.92 2E-05 27.7 2.2 23 106-128 49-71 (100)
86 PRK00919 GMP synthase subunit 84.6 14 0.00031 27.5 10.3 37 5-44 22-58 (307)
87 cd01715 ETF_alpha The electron 84.6 9.3 0.0002 25.5 7.3 24 107-130 71-94 (168)
88 PRK00109 Holliday junction res 84.3 1.5 3.2E-05 28.5 3.1 55 107-161 42-100 (138)
89 TIGR00420 trmU tRNA (5-methyla 83.9 17 0.00036 27.7 10.8 33 5-41 1-33 (352)
90 PRK08349 hypothetical protein; 83.6 12 0.00026 25.7 8.8 33 6-42 2-34 (198)
91 PRK13010 purU formyltetrahydro 83.2 16 0.00035 27.0 9.2 40 89-128 135-178 (289)
92 TIGR00237 xseA exodeoxyribonuc 83.1 4.5 9.9E-05 31.6 5.9 55 102-156 165-225 (432)
93 KOG1467 Translation initiation 83.1 22 0.00047 28.3 9.9 108 6-160 361-471 (556)
94 COG1606 ATP-utilizing enzymes 82.6 16 0.00035 26.5 10.1 90 2-128 15-122 (269)
95 TIGR00655 PurU formyltetrahydr 82.5 17 0.00037 26.7 9.4 39 90-128 127-169 (280)
96 COG1066 Sms Predicted ATP-depe 82.5 17 0.00036 28.4 8.4 100 17-158 107-218 (456)
97 PF03652 UPF0081: Uncharacteri 82.1 3.6 7.8E-05 26.6 4.3 57 105-161 37-98 (135)
98 PRK11070 ssDNA exonuclease Rec 81.9 25 0.00054 28.7 9.7 92 5-129 70-161 (575)
99 COG1597 LCB5 Sphingosine kinas 81.5 15 0.00033 27.2 7.9 77 78-160 16-93 (301)
100 PRK11889 flhF flagellar biosyn 81.2 24 0.00052 27.6 8.9 53 82-134 283-335 (436)
101 TIGR00930 2a30 K-Cl cotranspor 81.1 25 0.00054 30.6 9.9 95 6-129 577-677 (953)
102 COG1570 XseA Exonuclease VII, 81.0 5.1 0.00011 31.3 5.3 73 83-156 152-231 (440)
103 PRK11914 diacylglycerol kinase 80.6 12 0.00025 27.7 7.1 73 81-160 25-98 (306)
104 PRK14664 tRNA-specific 2-thiou 80.6 23 0.00051 27.1 11.4 34 4-41 5-38 (362)
105 cd02067 B12-binding B12 bindin 80.4 10 0.00023 23.5 6.0 44 84-128 16-59 (119)
106 cd05564 PTS_IIB_chitobiose_lic 80.2 3.9 8.5E-05 24.6 3.8 66 83-159 15-80 (96)
107 COG0042 tRNA-dihydrouridine sy 80.2 23 0.00049 26.6 9.4 102 7-129 69-175 (323)
108 COG2876 AroA 3-deoxy-D-arabino 80.1 11 0.00024 27.4 6.4 87 14-131 54-140 (286)
109 COG0452 Dfp Phosphopantothenoy 80.0 10 0.00023 29.2 6.8 42 2-44 2-43 (392)
110 PF13167 GTP-bdg_N: GTP-bindin 79.8 11 0.00024 22.8 6.3 50 79-128 5-66 (95)
111 PRK05920 aromatic acid decarbo 79.8 5.9 0.00013 27.6 5.0 36 3-39 2-37 (204)
112 PF13662 Toprim_4: Toprim doma 79.7 4 8.7E-05 23.5 3.6 35 4-38 46-80 (81)
113 cd01996 Alpha_ANH_like_III Thi 79.7 14 0.00031 24.0 9.9 34 6-42 3-36 (154)
114 PF07355 GRDB: Glycine/sarcosi 79.0 8.3 0.00018 29.2 5.7 69 86-156 39-117 (349)
115 PRK04284 ornithine carbamoyltr 77.8 23 0.00051 26.7 7.9 41 104-154 86-126 (332)
116 cd01998 tRNA_Me_trans tRNA met 77.8 28 0.00061 26.4 10.8 34 6-43 1-34 (349)
117 PF01993 MTD: methylene-5,6,7, 77.8 2.9 6.3E-05 29.8 2.9 66 90-160 25-96 (276)
118 COG3340 PepE Peptidase E [Amin 77.5 22 0.00048 25.1 9.7 46 81-128 48-93 (224)
119 cd03364 TOPRIM_DnaG_primases T 77.4 11 0.00024 21.5 5.2 35 4-38 43-77 (79)
120 COG3360 Uncharacterized conser 77.3 9.2 0.0002 21.5 4.2 45 1-45 3-47 (71)
121 TIGR03573 WbuX N-acetyl sugar 77.2 29 0.00063 26.2 9.6 34 6-42 61-94 (343)
122 PF02441 Flavoprotein: Flavopr 77.2 6.5 0.00014 25.0 4.3 33 5-38 1-33 (129)
123 KOG0780 Signal recognition par 77.0 28 0.00061 27.1 8.0 52 82-133 143-197 (483)
124 PRK12562 ornithine carbamoyltr 76.5 28 0.0006 26.4 8.0 42 104-155 86-127 (334)
125 cd01714 ETF_beta The electron 76.2 23 0.0005 24.5 9.1 30 13-42 33-62 (202)
126 TIGR00250 RNAse_H_YqgF RNAse H 75.8 4.4 9.5E-05 26.0 3.2 56 106-161 35-94 (130)
127 PRK00509 argininosuccinate syn 74.9 37 0.00081 26.4 11.8 38 4-44 2-39 (399)
128 cd02070 corrinoid_protein_B12- 74.9 15 0.00032 25.4 5.9 70 84-156 99-171 (201)
129 PRK13398 3-deoxy-7-phosphohept 74.7 30 0.00065 25.2 10.7 85 15-131 38-122 (266)
130 PLN02948 phosphoribosylaminoim 74.7 19 0.0004 29.4 7.2 71 82-160 424-498 (577)
131 PF01596 Methyltransf_3: O-met 73.9 13 0.00029 25.9 5.4 48 81-128 80-130 (205)
132 PLN02331 phosphoribosylglycina 73.8 28 0.0006 24.4 10.0 40 89-128 43-87 (207)
133 PHA02031 putative DnaG-like pr 73.6 9.4 0.0002 27.7 4.7 37 5-41 207-243 (266)
134 PRK15424 propionate catabolism 73.5 17 0.00037 29.4 6.6 67 81-159 23-92 (538)
135 TIGR01769 GGGP geranylgeranylg 73.5 6.6 0.00014 27.4 3.8 51 109-161 14-64 (205)
136 PF01008 IF-2B: Initiation fac 73.3 33 0.00071 25.0 7.7 63 90-158 153-218 (282)
137 PRK05703 flhF flagellar biosyn 73.2 43 0.00093 26.2 8.8 48 83-133 266-313 (424)
138 PRK02261 methylaspartate mutas 73.1 15 0.00032 23.8 5.2 45 84-129 20-64 (137)
139 COG0552 FtsY Signal recognitio 72.9 39 0.00084 25.6 9.1 57 81-138 180-240 (340)
140 TIGR02855 spore_yabG sporulati 72.9 16 0.00036 26.6 5.7 49 81-129 114-163 (283)
141 PF04459 DUF512: Protein of un 72.8 29 0.00064 24.2 6.9 67 94-160 123-203 (204)
142 PRK08185 hypothetical protein; 72.8 12 0.00026 27.6 5.2 66 91-156 8-74 (283)
143 PRK08384 thiamine biosynthesis 72.5 42 0.00092 25.9 9.7 36 4-43 180-215 (381)
144 PF01207 Dus: Dihydrouridine s 72.0 29 0.00062 25.9 7.1 73 83-155 110-188 (309)
145 PRK13059 putative lipid kinase 71.9 31 0.00068 25.3 7.3 72 82-160 19-92 (295)
146 PRK02255 putrescine carbamoylt 71.8 41 0.0009 25.5 8.6 41 105-155 84-124 (338)
147 COG0420 SbcD DNA repair exonuc 71.6 5.1 0.00011 30.7 3.2 18 109-126 30-47 (390)
148 cd07044 CofD_YvcK Family of Co 71.4 5.7 0.00012 29.6 3.3 52 106-159 163-215 (309)
149 TIGR02329 propionate_PrpR prop 71.3 28 0.00061 28.1 7.4 66 82-159 14-82 (526)
150 cd02071 MM_CoA_mut_B12_BD meth 71.1 18 0.00039 22.7 5.2 45 84-129 16-60 (122)
151 cd00954 NAL N-Acetylneuraminic 71.1 31 0.00068 25.3 7.1 52 109-160 86-138 (288)
152 PRK03170 dihydrodipicolinate s 70.9 30 0.00064 25.4 7.0 78 82-160 58-137 (292)
153 cd00950 DHDPS Dihydrodipicolin 70.8 24 0.00053 25.7 6.5 53 108-160 84-136 (284)
154 COG1646 Predicted phosphate-bi 70.8 8 0.00017 27.5 3.7 53 106-160 28-80 (240)
155 PRK00211 sulfur relay protein 70.6 18 0.00038 22.8 5.0 40 4-44 1-44 (119)
156 PF05582 Peptidase_U57: YabG p 70.6 17 0.00037 26.7 5.4 49 81-129 115-164 (287)
157 PRK13054 lipid kinase; Reviewe 70.5 40 0.00087 24.8 7.8 70 84-160 20-94 (300)
158 PRK04147 N-acetylneuraminate l 70.2 25 0.00055 25.8 6.5 64 96-159 74-139 (293)
159 TIGR00646 MG010 DNA primase-re 69.9 17 0.00036 25.7 5.1 37 4-40 154-190 (218)
160 PRK04527 argininosuccinate syn 69.7 51 0.0011 25.7 10.8 36 4-43 2-37 (400)
161 cd02072 Glm_B12_BD B12 binding 69.7 22 0.00049 22.8 5.3 42 86-128 18-59 (128)
162 COG0615 TagD Cytidylyltransfer 69.6 28 0.00061 22.7 6.0 36 95-130 62-97 (140)
163 COG1058 CinA Predicted nucleot 69.0 29 0.00063 25.2 6.3 70 81-155 20-92 (255)
164 PRK14805 ornithine carbamoyltr 69.0 45 0.00098 24.8 7.9 43 103-155 78-120 (302)
165 COG0540 PyrB Aspartate carbamo 68.7 47 0.001 24.9 9.4 43 103-154 86-129 (316)
166 TIGR01501 MthylAspMutase methy 68.6 24 0.00052 22.8 5.4 71 85-158 19-90 (134)
167 PRK14561 hypothetical protein; 68.2 36 0.00078 23.4 9.8 32 6-42 2-33 (194)
168 PRK11106 queuosine biosynthesi 67.7 42 0.00091 23.9 10.4 36 5-44 2-37 (231)
169 COG0745 OmpR Response regulato 67.6 32 0.0007 24.4 6.4 71 80-159 9-81 (229)
170 TIGR02766 crypt_chrom_pln cryp 67.2 22 0.00048 28.2 6.0 48 80-128 49-96 (475)
171 PRK08745 ribulose-phosphate 3- 67.2 22 0.00047 25.2 5.4 43 85-128 159-201 (223)
172 PF04244 DPRP: Deoxyribodipyri 67.2 23 0.0005 25.1 5.5 73 83-160 50-127 (224)
173 COG1440 CelA Phosphotransferas 67.2 22 0.00048 21.8 4.6 66 82-158 16-81 (102)
174 PRK13055 putative lipid kinase 67.0 52 0.0011 24.7 7.9 74 81-160 19-95 (334)
175 PF11965 DUF3479: Domain of un 66.8 36 0.00078 22.9 8.2 87 6-126 2-92 (164)
176 TIGR00683 nanA N-acetylneurami 66.8 44 0.00095 24.6 7.1 65 96-160 71-138 (290)
177 COG3969 Predicted phosphoadeno 66.8 14 0.0003 28.0 4.4 45 3-47 26-71 (407)
178 cd06361 PBP1_GPC6A_like Ligand 66.7 57 0.0012 25.2 11.3 39 92-130 231-269 (403)
179 TIGR02069 cyanophycinase cyano 66.6 46 0.001 24.0 7.9 23 17-39 13-35 (250)
180 cd07186 CofD_like LPPG:FO 2-ph 66.5 20 0.00044 26.6 5.3 50 106-157 172-222 (303)
181 cd02801 DUS_like_FMN Dihydrour 66.5 41 0.0009 23.4 9.4 63 95-157 123-190 (231)
182 PRK00771 signal recognition pa 66.4 63 0.0014 25.5 9.9 32 9-41 101-132 (437)
183 PRK09195 gatY tagatose-bisphos 66.3 22 0.00047 26.3 5.4 68 91-158 13-82 (284)
184 cd05569 PTS_IIB_fructose PTS_I 66.2 17 0.00037 21.8 4.2 47 82-129 16-63 (96)
185 TIGR01826 CofD_related conserv 66.1 11 0.00023 28.2 3.8 52 106-159 161-213 (310)
186 PRK06806 fructose-bisphosphate 66.1 28 0.0006 25.6 5.9 69 90-158 12-82 (281)
187 PRK12857 fructose-1,6-bisphosp 66.0 24 0.00053 26.0 5.6 68 91-158 13-82 (284)
188 cd08550 GlyDH-like Glycerol_de 65.9 56 0.0012 24.7 8.5 70 83-160 37-111 (349)
189 cd02069 methionine_synthase_B1 65.6 28 0.00061 24.4 5.7 69 84-155 105-174 (213)
190 cd00952 CHBPH_aldolase Trans-o 65.5 45 0.00097 24.8 7.0 66 95-160 77-145 (309)
191 TIGR00674 dapA dihydrodipicoli 64.9 39 0.00085 24.7 6.6 65 96-160 68-134 (285)
192 PRK10674 deoxyribodipyrimidine 64.6 34 0.00074 27.1 6.6 88 17-128 16-105 (472)
193 PRK15411 rcsA colanic acid cap 64.5 44 0.00096 23.1 7.3 69 83-158 12-85 (207)
194 PRK13337 putative lipid kinase 64.5 55 0.0012 24.1 7.9 71 84-160 21-93 (304)
195 PF01220 DHquinase_II: Dehydro 64.4 37 0.00081 22.2 7.2 73 78-157 25-99 (140)
196 PRK08091 ribulose-phosphate 3- 64.4 26 0.00057 24.9 5.3 43 85-128 167-209 (228)
197 TIGR01858 tag_bisphos_ald clas 64.3 27 0.00059 25.7 5.6 69 90-158 10-80 (282)
198 PRK03515 ornithine carbamoyltr 64.2 61 0.0013 24.6 8.4 41 104-154 86-126 (336)
199 PF02887 PK_C: Pyruvate kinase 64.2 20 0.00044 22.2 4.4 44 107-159 4-48 (117)
200 cd06533 Glyco_transf_WecG_TagA 64.1 24 0.00052 23.7 5.0 45 106-156 86-130 (171)
201 TIGR00289 conserved hypothetic 64.1 49 0.0011 23.4 10.7 90 6-128 2-94 (222)
202 cd02065 B12-binding_like B12 b 64.1 31 0.00066 21.3 5.3 69 84-156 16-86 (125)
203 PF00180 Iso_dh: Isocitrate/is 63.8 35 0.00077 25.9 6.3 30 15-44 160-190 (348)
204 PRK12737 gatY tagatose-bisphos 63.7 27 0.00058 25.8 5.5 69 90-158 12-82 (284)
205 PRK02628 nadE NAD synthetase; 63.7 60 0.0013 27.2 8.0 38 3-40 360-400 (679)
206 PRK06801 hypothetical protein; 63.6 31 0.00066 25.5 5.7 68 91-158 13-82 (286)
207 COG0415 PhrB Deoxyribodipyrimi 63.6 36 0.00079 27.0 6.4 47 80-128 53-99 (461)
208 PRK04523 N-acetylornithine car 63.5 63 0.0014 24.5 8.5 50 105-155 92-142 (335)
209 PRK06988 putative formyltransf 63.3 60 0.0013 24.2 8.6 41 86-129 46-87 (312)
210 TIGR00696 wecB_tagA_cpsF bacte 63.1 17 0.00037 24.7 4.1 31 95-127 74-108 (177)
211 PF09043 Lys-AminoMut_A: D-Lys 63.0 37 0.00081 26.6 6.2 49 95-143 146-197 (509)
212 PF01507 PAPS_reduct: Phosphoa 63.0 40 0.00088 22.1 8.1 35 6-44 1-35 (174)
213 PF03808 Glyco_tran_WecB: Glyc 62.9 28 0.00061 23.4 5.2 69 82-156 59-132 (172)
214 PF02729 OTCace_N: Aspartate/o 62.8 10 0.00022 24.7 2.9 58 87-154 57-120 (142)
215 PRK08192 aspartate carbamoyltr 62.2 67 0.0015 24.4 8.5 43 103-155 85-127 (338)
216 PF02310 B12-binding: B12 bind 62.1 34 0.00074 21.0 7.1 71 83-156 16-86 (121)
217 TIGR00829 FRU PTS system, fruc 62.0 21 0.00044 21.1 3.9 47 83-129 16-62 (85)
218 TIGR00640 acid_CoA_mut_C methy 61.9 31 0.00068 22.1 5.0 70 84-156 19-89 (132)
219 PRK13011 formyltetrahydrofolat 61.5 63 0.0014 23.8 9.3 38 91-128 133-174 (286)
220 PRK13057 putative lipid kinase 61.5 45 0.00097 24.3 6.4 70 83-160 14-84 (287)
221 COG0036 Rpe Pentose-5-phosphat 60.9 39 0.00085 23.9 5.6 31 97-128 169-199 (220)
222 PF01884 PcrB: PcrB family; I 60.7 11 0.00024 26.8 2.9 51 106-160 19-69 (230)
223 PF01261 AP_endonuc_2: Xylose 60.7 23 0.00049 23.9 4.6 81 18-122 70-158 (213)
224 PF01933 UPF0052: Uncharacteri 60.4 10 0.00023 28.1 2.9 51 106-158 172-223 (300)
225 COG0788 PurU Formyltetrahydrof 60.2 21 0.00046 26.0 4.2 44 85-128 128-175 (287)
226 COG0329 DapA Dihydrodipicolina 59.9 69 0.0015 23.8 10.1 55 107-161 87-141 (299)
227 TIGR00177 molyb_syn molybdenum 59.8 43 0.00094 21.7 5.5 46 81-126 26-73 (144)
228 PRK14057 epimerase; Provisiona 59.8 34 0.00074 24.8 5.3 42 86-128 182-223 (254)
229 TIGR00169 leuB 3-isopropylmala 59.6 44 0.00096 25.5 6.1 30 15-44 163-192 (349)
230 COG0191 Fba Fructose/tagatose 59.6 28 0.0006 25.7 4.8 70 89-158 11-83 (286)
231 PRK09722 allulose-6-phosphate 59.3 40 0.00087 24.0 5.5 42 86-128 158-199 (229)
232 cd00951 KDGDH 5-dehydro-4-deox 59.2 53 0.0012 24.1 6.4 63 95-158 69-133 (289)
233 cd00408 DHDPS-like Dihydrodipi 59.1 66 0.0014 23.3 10.0 78 82-160 54-133 (281)
234 TIGR00064 ftsY signal recognit 58.9 68 0.0015 23.4 10.0 51 83-133 115-168 (272)
235 smart00851 MGS MGS-like domain 58.9 29 0.00063 20.3 4.2 65 89-154 24-89 (90)
236 PRK14974 cell division protein 58.7 78 0.0017 24.0 9.7 51 82-132 182-235 (336)
237 TIGR00364 exsB protein. This p 58.6 57 0.0012 22.4 10.1 32 8-43 2-33 (201)
238 TIGR03702 lip_kinase_YegS lipi 58.4 71 0.0015 23.4 7.4 69 86-160 18-90 (293)
239 TIGR02634 xylF D-xylose ABC tr 58.4 64 0.0014 23.5 6.8 74 79-158 12-87 (302)
240 COG1184 GCD2 Translation initi 58.2 76 0.0016 23.7 10.8 66 86-158 161-229 (301)
241 cd00946 FBP_aldolase_IIA Class 58.1 42 0.00091 25.6 5.7 69 90-158 10-95 (345)
242 PRK01713 ornithine carbamoyltr 58.0 80 0.0017 23.9 7.3 43 104-156 87-129 (334)
243 COG0816 Predicted endonuclease 57.8 19 0.00041 23.5 3.5 55 107-161 41-99 (141)
244 PRK08194 tartrate dehydrogenas 57.6 46 0.001 25.4 5.9 30 15-44 161-190 (352)
245 PF14639 YqgF: Holliday-juncti 57.6 10 0.00022 25.0 2.2 20 108-127 52-71 (150)
246 PRK09197 fructose-bisphosphate 57.5 43 0.00094 25.5 5.7 69 90-158 15-100 (350)
247 cd00947 TBP_aldolase_IIB Tagat 57.2 36 0.00078 25.0 5.2 68 91-158 8-77 (276)
248 PF03575 Peptidase_S51: Peptid 57.2 12 0.00027 24.5 2.6 60 85-146 3-62 (154)
249 PLN02828 formyltetrahydrofolat 57.1 75 0.0016 23.3 10.5 85 4-128 70-156 (268)
250 PRK00772 3-isopropylmalate deh 57.1 59 0.0013 24.9 6.4 30 15-44 166-195 (358)
251 cd07187 YvcK_like family of mo 57.1 18 0.00039 27.0 3.6 51 106-158 164-215 (308)
252 PRK00856 pyrB aspartate carbam 57.0 80 0.0017 23.6 8.4 44 104-156 86-129 (305)
253 PRK02929 L-arabinose isomerase 56.3 73 0.0016 25.7 7.0 48 107-160 56-107 (499)
254 TIGR00147 lipid kinase, YegS/R 56.3 76 0.0017 23.1 8.0 73 81-160 18-93 (293)
255 PRK03620 5-dehydro-4-deoxygluc 56.1 63 0.0014 23.9 6.4 63 95-158 76-140 (303)
256 cd00958 DhnA Class I fructose- 56.0 69 0.0015 22.5 6.8 68 83-158 110-187 (235)
257 TIGR02088 LEU3_arch isopropylm 55.9 40 0.00087 25.4 5.3 30 14-43 140-169 (322)
258 TIGR00524 eIF-2B_rel eIF-2B al 55.8 84 0.0018 23.5 8.3 66 88-158 171-239 (303)
259 TIGR02370 pyl_corrinoid methyl 55.8 42 0.00092 23.1 5.2 62 84-148 101-162 (197)
260 COG1184 GCD2 Translation initi 55.4 76 0.0016 23.7 6.5 52 104-159 128-179 (301)
261 cd00532 MGS-like MGS-like doma 55.4 47 0.001 20.4 5.7 65 91-155 38-104 (112)
262 COG0603 Predicted PP-loop supe 55.3 73 0.0016 22.6 8.4 37 4-44 2-38 (222)
263 TIGR01859 fruc_bis_ald_ fructo 55.2 81 0.0017 23.2 6.7 76 82-157 115-207 (282)
264 TIGR01440 conserved hypothetic 55.2 63 0.0014 21.8 7.5 112 18-156 4-117 (172)
265 COG0301 ThiI Thiamine biosynth 55.2 98 0.0021 24.0 8.7 37 5-45 176-212 (383)
266 cd03557 L-arabinose_isomerase 55.1 39 0.00085 27.0 5.4 48 107-160 50-101 (484)
267 PRK08883 ribulose-phosphate 3- 55.1 52 0.0011 23.2 5.6 45 83-128 153-197 (220)
268 PF00834 Ribul_P_3_epim: Ribul 55.1 17 0.00036 25.3 3.1 45 82-127 151-195 (201)
269 PRK02090 phosphoadenosine phos 55.0 75 0.0016 22.6 6.5 36 5-44 41-76 (241)
270 COG1197 Mfd Transcription-repa 54.9 74 0.0016 28.4 7.2 48 80-128 656-705 (1139)
271 PLN02589 caffeoyl-CoA O-methyl 54.9 78 0.0017 22.8 7.1 48 81-128 114-165 (247)
272 PRK10653 D-ribose transporter 54.9 78 0.0017 22.8 7.6 73 80-158 41-115 (295)
273 PRK12738 kbaY tagatose-bisphos 54.9 49 0.0011 24.5 5.6 68 91-158 13-82 (286)
274 TIGR00737 nifR3_yhdG putative 54.6 88 0.0019 23.3 10.1 64 95-158 131-200 (319)
275 COG3640 CooC CO dehydrogenase 54.3 81 0.0018 22.8 7.2 120 6-148 2-128 (255)
276 PRK00861 putative lipid kinase 54.1 86 0.0019 23.0 7.0 68 85-160 23-91 (300)
277 TIGR00290 MJ0570_dom MJ0570-re 54.0 77 0.0017 22.5 10.7 90 6-128 2-94 (223)
278 PF02142 MGS: MGS-like domain 53.9 11 0.00024 22.5 1.8 68 86-154 21-94 (95)
279 cd01539 PBP1_GGBP Periplasmic 53.8 84 0.0018 22.9 7.0 72 81-158 15-90 (303)
280 PRK10415 tRNA-dihydrouridine s 53.8 93 0.002 23.3 9.1 64 95-158 133-202 (321)
281 PRK13015 3-dehydroquinate dehy 53.7 62 0.0013 21.3 6.8 73 78-157 26-100 (146)
282 TIGR00670 asp_carb_tr aspartat 53.5 91 0.002 23.2 7.9 42 104-155 81-122 (301)
283 TIGR01918 various_sel_PB selen 53.1 59 0.0013 25.5 5.8 48 108-156 65-113 (431)
284 cd00578 L-fuc_L-ara-isomerases 52.9 66 0.0014 25.3 6.4 74 81-160 22-98 (452)
285 cd05008 SIS_GlmS_GlmD_1 SIS (S 52.8 35 0.00077 21.1 4.1 39 4-43 46-84 (126)
286 PF00781 DAGK_cat: Diacylglyce 52.7 56 0.0012 20.5 6.2 71 84-160 17-92 (130)
287 COG0794 GutQ Predicted sugar p 52.6 39 0.00085 23.6 4.5 43 3-46 85-127 (202)
288 PRK10886 DnaA initiator-associ 52.6 33 0.00071 23.8 4.2 42 3-45 108-149 (196)
289 PRK06850 hypothetical protein; 52.5 57 0.0012 26.3 5.9 38 6-43 36-78 (507)
290 PF13727 CoA_binding_3: CoA-bi 52.4 17 0.00037 23.8 2.8 46 108-157 130-175 (175)
291 TIGR00715 precor6x_red precorr 52.3 46 0.00099 24.1 5.0 66 90-161 166-234 (256)
292 cd01537 PBP1_Repressors_Sugar_ 52.2 76 0.0016 21.9 8.6 73 80-159 14-88 (264)
293 PRK05395 3-dehydroquinate dehy 52.1 66 0.0014 21.2 6.8 73 78-157 26-100 (146)
294 cd06375 PBP1_mGluR_groupII Lig 51.9 1.2E+02 0.0025 24.0 11.3 24 106-129 243-266 (458)
295 TIGR02089 TTC tartrate dehydro 51.8 66 0.0014 24.6 5.9 30 15-44 164-193 (352)
296 TIGR02313 HpaI-NOT-DapA 2,4-di 51.7 95 0.0021 22.9 9.5 66 95-160 69-137 (294)
297 PRK10550 tRNA-dihydrouridine s 51.7 1E+02 0.0022 23.1 10.7 61 95-158 133-202 (312)
298 TIGR00583 mre11 DNA repair pro 51.7 25 0.00054 27.4 3.8 10 149-158 109-118 (405)
299 TIGR00421 ubiX_pad polyprenyl 51.5 35 0.00076 23.3 4.1 33 6-39 1-33 (181)
300 TIGR01917 gly_red_sel_B glycin 51.5 67 0.0015 25.2 5.9 62 94-156 42-113 (431)
301 PRK12726 flagellar biosynthesi 51.5 1.2E+02 0.0025 23.8 8.9 51 83-133 249-299 (407)
302 KOG1466 Translation initiation 51.4 96 0.0021 22.8 6.6 64 90-160 176-242 (313)
303 cd01029 TOPRIM_primases TOPRIM 51.3 43 0.00094 18.8 5.0 32 5-36 44-75 (79)
304 PRK06806 fructose-bisphosphate 51.1 97 0.0021 22.8 7.9 76 82-157 115-207 (281)
305 PRK05282 (alpha)-aspartyl dipe 50.9 60 0.0013 23.2 5.4 40 83-128 49-88 (233)
306 cd06320 PBP1_allose_binding Pe 50.9 80 0.0017 22.3 6.2 72 81-158 15-90 (275)
307 PRK05647 purN phosphoribosylgl 50.8 82 0.0018 21.8 9.4 42 87-128 43-89 (200)
308 cd04795 SIS SIS domain. SIS (S 50.5 43 0.00093 19.0 4.0 35 4-39 47-81 (87)
309 cd05710 SIS_1 A subgroup of th 50.3 46 0.001 20.7 4.3 40 4-44 47-86 (120)
310 cd05403 NT_KNTase_like Nucleot 50.3 13 0.00028 21.5 1.7 60 97-159 17-76 (93)
311 cd05006 SIS_GmhA Phosphoheptos 50.2 39 0.00085 22.6 4.2 40 4-44 101-140 (177)
312 cd06315 PBP1_ABC_sugar_binding 50.2 92 0.002 22.3 6.6 73 80-158 15-89 (280)
313 PRK12822 phospho-2-dehydro-3-d 50.1 1.1E+02 0.0025 23.4 7.5 128 5-157 52-187 (356)
314 CHL00076 chlB photochlorophyll 50.0 31 0.00067 27.7 4.2 23 22-44 14-36 (513)
315 COG1504 Uncharacterized conser 50.0 37 0.0008 21.2 3.6 38 118-158 60-97 (121)
316 COG1737 RpiR Transcriptional r 50.0 30 0.00065 25.3 3.9 42 3-45 176-217 (281)
317 PF00070 Pyr_redox: Pyridine n 49.9 47 0.001 18.8 6.2 51 18-100 9-59 (80)
318 TIGR00619 sbcd exonuclease Sbc 49.9 24 0.00052 25.3 3.3 24 82-107 26-49 (253)
319 PF02571 CbiJ: Precorrin-6x re 49.9 25 0.00054 25.4 3.3 45 112-162 187-231 (249)
320 PRK03692 putative UDP-N-acetyl 49.6 58 0.0013 23.4 5.2 53 95-155 130-187 (243)
321 PF13362 Toprim_3: Toprim doma 49.6 53 0.0012 19.4 4.8 38 3-40 40-79 (96)
322 cd00466 DHQase_II Dehydroquina 49.5 72 0.0016 20.9 6.5 73 78-157 24-98 (140)
323 TIGR00381 cdhD CO dehydrogenas 49.4 41 0.00088 26.0 4.5 44 113-156 147-194 (389)
324 PRK07998 gatY putative fructos 49.4 54 0.0012 24.2 5.0 67 90-156 12-80 (283)
325 PLN02342 ornithine carbamoyltr 49.4 1.2E+02 0.0025 23.2 8.4 42 104-155 126-167 (348)
326 TIGR01859 fruc_bis_ald_ fructo 49.2 64 0.0014 23.8 5.4 68 91-158 11-82 (282)
327 cd06284 PBP1_LacI_like_6 Ligan 49.2 89 0.0019 21.8 7.9 71 79-158 13-85 (267)
328 TIGR01304 IMP_DH_rel_2 IMP deh 49.2 1.2E+02 0.0026 23.4 7.1 65 89-155 126-193 (369)
329 cd03145 GAT1_cyanophycinase Ty 49.1 90 0.0019 21.8 8.8 24 16-39 13-36 (217)
330 TIGR03127 RuMP_HxlB 6-phospho 49.1 40 0.00086 22.6 4.2 41 4-45 72-112 (179)
331 PRK12858 tagatose 1,6-diphosph 49.1 1.2E+02 0.0025 23.2 7.5 115 19-159 106-250 (340)
332 PRK05720 mtnA methylthioribose 49.0 1.2E+02 0.0026 23.2 8.3 67 88-160 199-269 (344)
333 COG2099 CobK Precorrin-6x redu 48.9 26 0.00056 25.4 3.2 53 106-162 53-105 (257)
334 PRK13690 hypothetical protein; 48.7 85 0.0019 21.5 7.9 114 16-156 9-124 (184)
335 PF11215 DUF3010: Protein of u 48.7 49 0.0011 21.5 4.2 51 108-158 50-102 (138)
336 PLN02476 O-methyltransferase 48.6 1.1E+02 0.0023 22.6 8.9 50 79-128 151-203 (278)
337 cd06277 PBP1_LacI_like_1 Ligan 48.6 93 0.002 21.9 7.9 70 80-158 17-88 (268)
338 cd05014 SIS_Kpsf KpsF-like pro 48.6 46 0.00099 20.6 4.2 41 4-45 47-87 (128)
339 PRK11815 tRNA-dihydrouridine s 48.6 1.2E+02 0.0025 23.0 9.3 34 95-128 133-173 (333)
340 TIGR00441 gmhA phosphoheptose 48.6 46 0.00099 21.8 4.3 40 4-44 79-118 (154)
341 COG4122 Predicted O-methyltran 48.6 96 0.0021 22.0 6.7 50 78-128 91-141 (219)
342 PF03054 tRNA_Me_trans: tRNA m 48.6 79 0.0017 24.2 5.9 96 5-129 1-126 (356)
343 TIGR02260 benz_CoA_red_B benzo 48.5 48 0.001 25.9 4.9 53 107-159 338-390 (413)
344 PRK08417 dihydroorotase; Provi 48.0 57 0.0012 25.0 5.3 28 18-45 181-208 (386)
345 PRK10474 putative PTS system f 47.8 51 0.0011 19.5 4.0 46 84-129 3-48 (88)
346 PRK13794 hypothetical protein; 47.8 1.5E+02 0.0031 23.8 7.9 37 5-44 248-284 (479)
347 PF01902 ATP_bind_4: ATP-bindi 47.7 98 0.0021 21.9 8.6 89 6-127 2-93 (218)
348 PRK06849 hypothetical protein; 47.7 88 0.0019 23.9 6.2 37 1-41 1-37 (389)
349 cd05017 SIS_PGI_PMI_1 The memb 47.5 41 0.00088 20.8 3.8 35 4-39 43-77 (119)
350 TIGR01520 FruBisAldo_II_A fruc 47.4 97 0.0021 23.8 6.2 70 89-158 20-107 (357)
351 PRK11891 aspartate carbamoyltr 47.4 1.4E+02 0.0031 23.6 8.5 43 104-156 168-210 (429)
352 PF00793 DAHP_synth_1: DAHP sy 47.4 1.1E+02 0.0024 22.4 8.0 64 84-159 77-140 (270)
353 PRK08057 cobalt-precorrin-6x r 47.3 30 0.00066 24.9 3.5 43 112-160 183-225 (248)
354 cd06267 PBP1_LacI_sugar_bindin 47.3 93 0.002 21.5 7.7 70 81-158 15-86 (264)
355 PRK14466 ribosomal RNA large s 47.2 1.3E+02 0.0028 23.0 7.8 67 11-105 258-324 (345)
356 KOG2310 DNA repair exonuclease 47.2 19 0.00042 29.0 2.6 21 107-127 40-60 (646)
357 KOG1552 Predicted alpha/beta h 47.1 1.1E+02 0.0024 22.3 8.4 63 94-158 126-200 (258)
358 PRK05627 bifunctional riboflav 47.1 1.2E+02 0.0026 22.7 9.4 30 15-44 27-56 (305)
359 PF01012 ETF: Electron transfe 47.0 81 0.0018 20.7 5.8 80 80-159 17-99 (164)
360 COG0512 PabA Anthranilate/para 46.9 69 0.0015 22.2 4.9 63 85-155 15-79 (191)
361 TIGR00512 salvage_mtnA S-methy 46.9 1.3E+02 0.0027 22.9 8.6 64 89-158 200-267 (331)
362 PRK02102 ornithine carbamoyltr 46.8 1.3E+02 0.0027 22.9 7.5 41 104-154 87-127 (331)
363 COG0036 Rpe Pentose-5-phosphat 46.8 1E+02 0.0022 21.9 8.5 61 83-145 97-157 (220)
364 PRK12361 hypothetical protein; 46.6 1.3E+02 0.0029 24.3 7.3 70 83-160 261-331 (547)
365 COG1911 RPL30 Ribosomal protei 46.6 53 0.0011 20.0 3.8 48 108-160 24-71 (100)
366 COG0279 GmhA Phosphoheptose is 46.5 49 0.0011 22.4 4.0 40 4-44 109-148 (176)
367 PRK13936 phosphoheptose isomer 46.5 49 0.0011 22.8 4.3 41 3-44 110-150 (197)
368 cd00453 FTBP_aldolase_II Fruct 46.5 59 0.0013 24.7 4.9 70 90-159 7-94 (340)
369 cd01971 Nitrogenase_VnfN_like 46.4 39 0.00086 26.4 4.2 51 81-131 72-128 (427)
370 PF12683 DUF3798: Protein of u 46.4 1.2E+02 0.0025 22.4 6.5 76 24-129 122-209 (275)
371 smart00732 YqgFc Likely ribonu 46.4 58 0.0013 19.1 4.2 56 106-161 38-95 (99)
372 TIGR03679 arCOG00187 arCOG0018 46.2 1E+02 0.0022 21.6 9.7 87 9-129 2-96 (218)
373 PF02568 ThiI: Thiamine biosyn 46.2 99 0.0021 21.5 9.2 36 5-44 4-39 (197)
374 KOG0781 Signal recognition par 46.1 1.6E+02 0.0035 23.9 8.1 37 107-143 454-490 (587)
375 TIGR00167 cbbA ketose-bisphosp 46.1 84 0.0018 23.3 5.6 68 90-157 12-84 (288)
376 smart00852 MoCF_biosynth Proba 46.1 76 0.0016 20.1 5.7 46 81-126 17-64 (135)
377 TIGR01088 aroQ 3-dehydroquinat 45.8 85 0.0018 20.6 7.1 73 78-157 24-98 (141)
378 TIGR00824 EIIA-man PTS system, 45.6 73 0.0016 19.8 7.4 88 5-125 2-89 (116)
379 PRK13399 fructose-1,6-bisphosp 45.6 84 0.0018 24.0 5.6 68 90-157 12-82 (347)
380 cd01541 PBP1_AraR Ligand-bindi 45.5 1.1E+02 0.0023 21.6 8.2 76 80-158 14-91 (273)
381 TIGR01521 FruBisAldo_II_B fruc 45.4 86 0.0019 24.0 5.7 68 90-157 10-80 (347)
382 PF02878 PGM_PMM_I: Phosphoglu 45.3 71 0.0015 20.4 4.7 41 4-44 40-80 (137)
383 smart00493 TOPRIM topoisomeras 45.3 46 0.00099 18.5 3.5 25 5-29 48-72 (76)
384 PRK12723 flagellar biosynthesi 45.3 1.4E+02 0.0031 23.1 8.4 47 82-132 220-267 (388)
385 cd06318 PBP1_ABC_sugar_binding 45.2 1.1E+02 0.0024 21.7 7.8 73 80-158 14-88 (282)
386 cd00885 cinA Competence-damage 45.1 94 0.002 20.9 5.8 46 81-126 18-65 (170)
387 cd06322 PBP1_ABC_sugar_binding 44.9 1.1E+02 0.0023 21.5 7.2 73 80-158 14-88 (267)
388 cd01297 D-aminoacylase D-amino 44.7 1.5E+02 0.0032 23.0 8.9 30 16-45 225-254 (415)
389 PRK06027 purU formyltetrahydro 44.7 1.3E+02 0.0027 22.3 10.8 69 81-159 64-146 (286)
390 PRK08335 translation initiatio 44.3 1.3E+02 0.0028 22.2 9.1 65 88-160 153-221 (275)
391 TIGR03183 DNA_S_dndC putative 44.3 1.1E+02 0.0024 24.3 6.3 23 6-28 15-37 (447)
392 PF10087 DUF2325: Uncharacteri 44.3 69 0.0015 19.1 5.5 73 82-160 10-85 (97)
393 PRK10416 signal recognition pa 44.2 1.4E+02 0.0029 22.5 10.8 52 83-134 157-211 (318)
394 PF01380 SIS: SIS domain SIS d 44.2 69 0.0015 19.7 4.5 40 3-43 52-91 (131)
395 PF00072 Response_reg: Respons 44.2 67 0.0014 18.9 6.0 72 81-160 8-81 (112)
396 TIGR03297 Ppyr-DeCO2ase phosph 43.6 22 0.00048 27.1 2.4 55 105-159 63-124 (361)
397 PHA02546 47 endonuclease subun 43.3 56 0.0012 24.6 4.5 14 83-96 27-40 (340)
398 TIGR00658 orni_carb_tr ornithi 43.1 1.4E+02 0.003 22.3 8.1 43 104-156 80-122 (304)
399 TIGR00511 ribulose_e2b2 ribose 43.0 1.4E+02 0.003 22.3 10.4 65 87-158 158-225 (301)
400 TIGR01430 aden_deam adenosine 43.0 1.4E+02 0.003 22.2 9.1 41 82-122 172-212 (324)
401 PRK08997 isocitrate dehydrogen 43.0 1.2E+02 0.0027 23.0 6.1 31 14-44 146-177 (334)
402 PRK05234 mgsA methylglyoxal sy 43.0 94 0.002 20.3 9.6 79 1-127 1-83 (142)
403 PRK09875 putative hydrolase; P 42.9 94 0.002 23.0 5.5 50 81-130 138-189 (292)
404 TIGR00347 bioD dethiobiotin sy 42.9 63 0.0014 21.2 4.3 40 118-158 98-137 (166)
405 PRK10481 hypothetical protein; 42.8 1.2E+02 0.0026 21.6 6.4 56 94-156 152-212 (224)
406 COG0655 WrbA Multimeric flavod 42.7 1.1E+02 0.0024 21.1 9.1 39 6-44 5-43 (207)
407 cd06301 PBP1_rhizopine_binding 42.7 1.2E+02 0.0026 21.4 6.7 73 80-158 14-89 (272)
408 cd06295 PBP1_CelR Ligand bindi 42.6 1.2E+02 0.0026 21.4 8.7 71 80-158 25-95 (275)
409 PLN02347 GMP synthetase 42.6 1.9E+02 0.0041 23.7 8.6 38 4-44 229-266 (536)
410 PRK13938 phosphoheptose isomer 42.6 50 0.0011 22.9 3.8 40 4-44 113-152 (196)
411 PRK07315 fructose-bisphosphate 42.5 92 0.002 23.1 5.4 67 90-156 12-83 (293)
412 cd06323 PBP1_ribose_binding Pe 42.4 1.2E+02 0.0025 21.2 6.4 73 80-158 14-88 (268)
413 PRK05772 translation initiatio 42.3 1.6E+02 0.0034 22.7 9.0 63 90-158 222-288 (363)
414 KOG1650 Predicted K+/H+-antipo 42.2 2.2E+02 0.0049 24.4 9.1 141 6-158 445-599 (769)
415 cd01981 Pchlide_reductase_B Pc 42.2 51 0.0011 25.7 4.3 21 21-41 13-33 (430)
416 PRK07565 dihydroorotate dehydr 42.0 1.5E+02 0.0032 22.3 6.8 74 83-156 89-171 (334)
417 PF05728 UPF0227: Uncharacteri 41.9 89 0.0019 21.4 5.0 68 85-160 18-91 (187)
418 PF00701 DHDPS: Dihydrodipicol 41.9 1.2E+02 0.0027 22.1 6.1 65 95-159 70-136 (289)
419 cd04731 HisF The cyclase subun 41.9 1.2E+02 0.0027 21.4 7.4 51 108-158 151-201 (243)
420 PF13500 AAA_26: AAA domain; P 41.8 30 0.00065 23.6 2.7 40 6-45 2-42 (199)
421 PRK09856 fructoselysine 3-epim 41.8 1.3E+02 0.0028 21.6 6.6 78 18-119 89-172 (275)
422 PLN02496 probable phosphopanto 41.8 72 0.0016 22.4 4.5 34 4-39 19-52 (209)
423 COG1036 Archaeal flavoproteins 41.4 26 0.00055 23.6 2.1 51 111-161 80-136 (187)
424 cd06275 PBP1_PurR Ligand-bindi 41.2 1.2E+02 0.0027 21.2 9.0 73 80-159 14-88 (269)
425 cd05005 SIS_PHI Hexulose-6-pho 41.1 73 0.0016 21.3 4.5 41 4-45 75-115 (179)
426 PRK01269 tRNA s(4)U8 sulfurtra 40.8 1.9E+02 0.0041 23.2 8.3 37 4-44 177-213 (482)
427 PF03162 Y_phosphatase2: Tyros 40.7 44 0.00094 22.4 3.2 68 90-157 27-98 (164)
428 KOG3180 Electron transfer flav 40.3 1.3E+02 0.0028 21.1 6.8 79 15-128 40-123 (254)
429 PF01116 F_bP_aldolase: Fructo 40.3 31 0.00066 25.5 2.6 67 90-156 11-79 (287)
430 cd01972 Nitrogenase_VnfE_like 40.3 41 0.00089 26.2 3.5 17 24-40 15-31 (426)
431 PRK01565 thiamine biosynthesis 40.1 1.8E+02 0.0038 22.6 8.9 35 4-42 176-210 (394)
432 PRK14025 multifunctional 3-iso 40.1 1.2E+02 0.0026 23.0 5.7 30 15-44 140-174 (330)
433 PRK03437 3-isopropylmalate deh 40.0 1.3E+02 0.0028 23.0 5.9 30 15-44 160-190 (344)
434 PTZ00323 NAD+ synthase; Provis 39.8 1.6E+02 0.0034 22.0 10.8 26 4-29 46-71 (294)
435 CHL00073 chlN photochlorophyll 39.8 45 0.00098 26.5 3.6 52 80-131 82-140 (457)
436 PRK05835 fructose-bisphosphate 39.6 1.2E+02 0.0025 22.8 5.5 68 90-157 11-81 (307)
437 PRK07627 dihydroorotase; Provi 39.6 77 0.0017 24.8 4.9 28 18-45 212-239 (425)
438 PRK06731 flhF flagellar biosyn 39.5 1.5E+02 0.0033 21.7 9.6 51 83-133 118-168 (270)
439 PLN00118 isocitrate dehydrogen 39.5 1.2E+02 0.0026 23.5 5.7 31 14-44 183-214 (372)
440 cd01967 Nitrogenase_MoFe_alpha 39.4 64 0.0014 24.9 4.4 12 118-129 117-128 (406)
441 cd06282 PBP1_GntR_like_2 Ligan 39.2 1.3E+02 0.0029 20.9 8.3 70 81-157 15-86 (266)
442 TIGR03249 KdgD 5-dehydro-4-deo 39.0 1.6E+02 0.0034 21.7 9.3 61 96-157 75-137 (296)
443 cd03115 SRP The signal recogni 39.0 1.1E+02 0.0025 20.1 9.8 33 8-41 5-37 (173)
444 COG0151 PurD Phosphoribosylami 38.9 32 0.00069 26.9 2.6 22 107-128 51-72 (428)
445 PRK14072 6-phosphofructokinase 38.9 1.9E+02 0.0042 22.7 9.2 39 1-40 1-43 (416)
446 COG0482 TrmU Predicted tRNA(5- 38.7 1.8E+02 0.0039 22.4 9.9 37 4-44 3-39 (356)
447 cd01538 PBP1_ABC_xylose_bindin 38.6 1.5E+02 0.0032 21.3 7.2 73 80-158 14-88 (288)
448 TIGR01362 KDO8P_synth 3-deoxy- 38.6 1.1E+02 0.0024 22.3 5.1 44 81-129 59-102 (258)
449 PRK14461 ribosomal RNA large s 38.5 1.9E+02 0.004 22.5 7.5 26 80-105 326-351 (371)
450 COG0163 UbiX 3-polyprenyl-4-hy 38.5 1E+02 0.0022 21.3 4.6 35 4-39 2-36 (191)
451 TIGR03264 met_CoM_red_C methyl 38.4 1.3E+02 0.0028 20.6 6.4 69 86-160 53-138 (194)
452 PRK08392 hypothetical protein; 38.3 1.4E+02 0.003 20.8 5.8 68 82-152 137-205 (215)
453 PLN02527 aspartate carbamoyltr 38.2 1.7E+02 0.0037 21.9 8.8 42 105-156 83-124 (306)
454 PRK07084 fructose-bisphosphate 38.0 1.1E+02 0.0024 23.2 5.2 69 90-158 18-93 (321)
455 cd01424 MGS_CPS_II Methylglyox 38.0 94 0.002 18.9 5.5 63 90-155 38-100 (110)
456 PRK13011 formyltetrahydrofolat 38.0 1.7E+02 0.0036 21.7 7.4 68 81-158 64-145 (286)
457 PRK06372 translation initiatio 37.9 1.6E+02 0.0034 21.5 5.9 66 86-159 125-194 (253)
458 cd01968 Nitrogenase_NifE_I Nit 37.9 77 0.0017 24.6 4.6 10 31-40 22-31 (410)
459 TIGR01768 GGGP-family geranylg 37.9 68 0.0015 22.8 4.0 50 108-160 16-65 (223)
460 PF10649 DUF2478: Protein of u 37.9 39 0.00084 22.6 2.6 47 109-156 83-129 (159)
461 PRK03670 competence damage-ind 37.8 1.5E+02 0.0032 21.5 5.8 46 81-126 19-67 (252)
462 PRK05437 isopentenyl pyrophosp 37.7 1.8E+02 0.004 22.2 8.0 48 82-129 173-220 (352)
463 PRK08610 fructose-bisphosphate 37.6 1.3E+02 0.0027 22.4 5.4 67 91-157 13-84 (286)
464 TIGR00273 iron-sulfur cluster- 37.3 66 0.0014 25.4 4.2 57 71-127 40-96 (432)
465 PF06574 FAD_syn: FAD syntheta 37.2 1.2E+02 0.0027 20.0 7.7 121 15-159 19-146 (157)
466 PRK10427 putative PTS system f 37.0 75 0.0016 19.9 3.7 46 83-129 21-67 (114)
467 PF05690 ThiG: Thiazole biosyn 37.0 1.6E+02 0.0035 21.3 9.4 115 6-155 64-180 (247)
468 PF00551 Formyl_trans_N: Formy 37.0 99 0.0021 20.9 4.6 36 6-44 2-37 (181)
469 PLN02958 diacylglycerol kinase 36.9 2.2E+02 0.0048 22.8 12.2 71 84-160 132-209 (481)
470 KOG2697 Histidinol dehydrogena 36.9 1.7E+02 0.0036 22.1 5.8 98 3-134 243-349 (446)
471 PF13941 MutL: MutL protein 36.9 1.6E+02 0.0035 23.5 6.2 72 84-157 90-162 (457)
472 COG2179 Predicted hydrolase of 36.8 61 0.0013 22.0 3.4 37 4-41 35-71 (175)
473 PF01645 Glu_synthase: Conserv 36.8 2E+02 0.0042 22.3 6.5 34 95-128 203-236 (368)
474 PRK03673 hypothetical protein; 36.7 2.1E+02 0.0045 22.4 7.3 71 81-155 20-92 (396)
475 COG0371 GldA Glycerol dehydrog 36.6 1.9E+02 0.0041 22.3 6.3 73 81-161 43-119 (360)
476 PLN02285 methionyl-tRNA formyl 36.6 1.9E+02 0.0041 21.9 7.8 43 87-129 60-103 (334)
477 TIGR00175 mito_nad_idh isocitr 36.6 1.4E+02 0.0029 22.8 5.5 30 15-44 145-175 (333)
478 KOG0256 1-aminocyclopropane-1- 36.5 2.2E+02 0.0047 22.6 6.8 47 79-125 208-265 (471)
479 PRK06371 translation initiatio 36.5 1.9E+02 0.0041 22.0 8.9 65 88-158 189-257 (329)
480 COG1201 Lhr Lhr-like helicases 36.5 1.9E+02 0.0042 25.0 6.9 47 80-128 86-132 (814)
481 cd01542 PBP1_TreR_like Ligand- 36.4 1.5E+02 0.0032 20.6 8.2 71 80-158 14-86 (259)
482 cd06296 PBP1_CatR_like Ligand- 36.3 1.5E+02 0.0033 20.7 8.3 72 79-158 13-86 (270)
483 PF06050 HGD-D: 2-hydroxygluta 36.2 43 0.00093 25.0 3.0 54 105-159 272-326 (349)
484 PRK10310 PTS system galactitol 36.2 97 0.0021 18.5 4.8 41 83-128 19-59 (94)
485 PRK07369 dihydroorotase; Provi 36.0 91 0.002 24.3 4.8 28 18-45 213-240 (418)
486 cd01979 Pchlide_reductase_N Pc 36.0 44 0.00096 25.8 3.1 51 81-131 73-130 (396)
487 COG2870 RfaE ADP-heptose synth 36.0 71 0.0015 25.1 4.0 52 106-160 128-181 (467)
488 cd02812 PcrB_like PcrB_like pr 36.0 68 0.0015 22.7 3.7 51 108-161 14-65 (219)
489 COG1922 WecG Teichoic acid bio 35.9 1.6E+02 0.0035 21.4 5.6 19 109-127 151-169 (253)
490 PRK13814 pyrB aspartate carbam 35.9 1.9E+02 0.0041 21.7 7.6 44 104-156 86-130 (310)
491 PRK12724 flagellar biosynthesi 35.7 2.2E+02 0.0048 22.6 8.6 43 85-131 269-311 (432)
492 cd06274 PBP1_FruR Ligand bindi 35.7 1.5E+02 0.0033 20.7 8.8 71 80-158 14-86 (264)
493 PF06506 PrpR_N: Propionate ca 35.6 1.4E+02 0.003 20.1 5.2 49 98-158 10-61 (176)
494 COG2379 GckA Putative glycerat 35.6 2.2E+02 0.0047 22.3 9.1 130 26-158 170-315 (422)
495 TIGR00735 hisF imidazoleglycer 35.5 1.7E+02 0.0036 21.0 7.1 51 108-158 157-207 (254)
496 COG0391 Uncharacterized conser 35.4 63 0.0014 24.4 3.6 50 106-158 178-229 (323)
497 COG2102 Predicted ATPases of P 35.4 1.6E+02 0.0036 20.9 10.2 90 6-127 2-94 (223)
498 PRK01033 imidazole glycerol ph 35.3 1.7E+02 0.0037 21.1 8.4 90 2-127 1-104 (258)
499 COG0078 ArgF Ornithine carbamo 35.3 1.9E+02 0.0042 21.7 7.7 28 2-29 4-32 (310)
500 PRK00090 bioD dithiobiotin syn 35.2 99 0.0022 21.4 4.5 12 29-40 25-36 (222)
No 1
>PRK15005 universal stress protein F; Provisional
Probab=99.95 E-value=2.1e-27 Score=155.80 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=103.6
Q ss_pred CcEEEEEecCChh--hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 4 ARTVGVGMDNSPN--SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 4 ~~~ILv~~d~s~~--s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|++||+|+|+|+. +..|+++|..+|+..+++++++||.++...... .+...... ....+... +..+
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~------~~~~~~~~--~~~~~~~~----~~~~ 69 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYAS------LGLAYSAE--LPAMDDLK----AEAK 69 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccc------cccccccc--chHHHHHH----HHHH
Confidence 7999999999997 579999999999999999999999976432110 00000000 00000001 1122
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
+.++.+.+.+...+++++.++..|++.+.|++++++.++||||||++ ++++.+.++||++++|+++++||||++|
T Consensus 70 ~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 70 SQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCC-CCCchheeecchHHHHHHhCCCCEEEeC
Confidence 33333333444456778888999999999999999999999999988 4567888999999999999999999986
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.95 E-value=1e-27 Score=157.01 Aligned_cols=140 Identities=25% Similarity=0.324 Sum_probs=104.0
Q ss_pred CCcEEEEEecCCh--hhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 3 KARTVGVGMDNSP--NSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 3 ~~~~ILv~~d~s~--~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++||||+|+|+ .+..|+++|..+|+.. ++++++||.++..... . .........+ .+...+..
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~----~---~~~~~~~~~~------~~~~~~~~ 66 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLS----L---HRFAADVRRF------EEHLQHEA 66 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCccccc----c---cccccchhhH------HHHHHHHH
Confidence 3899999999994 8999999999999874 6999999997653211 0 0000000111 11111222
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
++.++.+.+.+...+.++++++..|++.++|.+++++.++||||||+++++ +.++++||++++|+++++||||+||
T Consensus 67 ~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 67 EERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 334444444444457788888999999999999999999999999999876 6778999999999999999999986
No 3
>PRK09982 universal stress protein UspD; Provisional
Probab=99.95 E-value=2.8e-27 Score=154.97 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+|+.+..|+++|..+|+..+++++++||.++...... +......... .+...+..+
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~-------~~~~~~~~~~------~~~~~~~~~ 67 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP-------GIYFPATEDI------LQLLKNKSD 67 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch-------hhhccchHHH------HHHHHHHHH
Confidence 358999999999999999999999999999999999999876432110 0000000111 111111122
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.++.+.+.+. ...++.++..|+|.+.|++++++.++||||||++ ++++.+++ | ++++|+++++||||+||...
T Consensus 68 ~~l~~~~~~~~--~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 68 NKLYKLTKNIQ--WPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMSADLLIVPFID 141 (142)
T ss_pred HHHHHHHHhcC--CCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCCCCEEEecCCC
Confidence 33333333332 2356677888999999999999999999999986 77776665 5 99999999999999999754
No 4
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.95 E-value=1.7e-26 Score=151.84 Aligned_cols=141 Identities=28% Similarity=0.401 Sum_probs=110.3
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|||++|+|+.+..|++||+.+|+..+++++++|+.++...... . .+ .. . ... ...+...+..++.++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~----~-~~---~~-~-~~~--~~~~~~~~~~~~~l~ 68 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPS----S-SG---KL-E-VAS--AYKQEEDKEAKELLL 68 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCC----C-cc---ch-H-HHH--HHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999876532210 0 00 00 0 000 111112223455666
Q ss_pred HHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeec-cchhHHhcCCC--ccEEEEeC
Q 031202 86 ILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLG-SVSNHVVTNSS--CPVTVVKG 158 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~g-s~~~~v~~~~~--~pVliv~~ 158 (164)
.+.+.+...+++++..+..| ++.++|++++++.++|+||||+++++++.++++| |++.+|+++++ |||++|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 69 PYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred HHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 66667777789999888776 8999999999999999999999999999888887 69999999999 99999986
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.94 E-value=1.5e-26 Score=151.86 Aligned_cols=139 Identities=22% Similarity=0.223 Sum_probs=100.0
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+|+.+..|+++|..+|+..+++++++||..+..... .+........+. ++..+
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-------~~~~~~~~~~~~---------~~~~~ 64 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLY-------TGLIDVNLGDMQ---------KRISE 64 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhh-------hhhhhcchHHHH---------HHHHH
Confidence 45899999999999999999999999999999999999943321110 000000000000 01122
Q ss_pred hHHHHHHHHhhhcCceEE-EEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVV-AKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
...+.+.+.....|+.+. ..+..|++.++|++++++.++||||||+++ +.+. . +||++++|+++++||||+||.+
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~-~-lgSva~~v~~~a~~pVLvv~~~ 140 (144)
T PRK15118 65 ETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWS-K-LMSSARQLINTVHVDMLIVPLR 140 (144)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHH-H-HHHHHHHHHhhCCCCEEEecCC
Confidence 333445555556677754 445689999999999999999999999995 3333 3 5799999999999999999864
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.94 E-value=7e-26 Score=146.81 Aligned_cols=140 Identities=28% Similarity=0.391 Sum_probs=105.5
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|+++|||++|+++.+..++++|..+|+..+++|+++|+.+...... ...................
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 65 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYS---------------FSAAEDEESEEEAEEEEQA 65 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccc---------------cccccccccccccchhhhh
Confidence 4799999999999999999999999999999999999999885432 0011100000000000000
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
............+......+..|++.++|++++++.++|+||||+++++++.++++||++++|+++++|||||||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 66 RQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred hhHHHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 000012233344667777788999999999999999999999999998999999999999999999999999997
No 7
>PRK10116 universal stress protein UspC; Provisional
Probab=99.93 E-value=1.6e-25 Score=146.53 Aligned_cols=139 Identities=15% Similarity=0.163 Sum_probs=104.0
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++|||++|+++.+..++++|..+|+.++++++++|+.+...... ... ... . ++..+...+
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--------~~~----~~~-~----~~~~~~~~~ 63 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN--------QFA----APM-L----EDLRSVMQE 63 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch--------hhh----HHH-H----HHHHHHHHH
Confidence 45899999999999999999999999999999999999986642210 000 000 0 011111122
Q ss_pred hHHHHHHHHhhhcCceEE-EEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVV-AKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+..+.+.+.....|++.. ..+..|++.++|++++++.++||||||+++++++.+++ |++++|+++++||||+||.+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~pVLvv~~~ 140 (142)
T PRK10116 64 ETQSFLDKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEVDVLLVPLT 140 (142)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCCCEEEEeCC
Confidence 333445555556677654 45678999999999999999999999999988777643 78999999999999999864
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.93 E-value=1.7e-24 Score=139.75 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=108.9
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+||||+|+++++..++++|..+|+..+++|+++|+.+...... . .... ...+..++.++
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~-----------~-~~~~---------~~~~~~~~~~~ 59 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS-----------P-SQLE---------VNVQRARKLLR 59 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC-----------c-chhH---------HHHHHHHHHHH
Confidence 6999999999999999999999999999999999998764221 0 0000 00123456677
Q ss_pred HHHHHhhhcCceEEEEEe-eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 86 ILDTLSRTKGAKVVAKVY-WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+.+.+...|++++..+. .|++.++|.+++++.++|+||||+++++++.++++||++.+|+++++|||++++
T Consensus 60 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 60 QAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 777777788999888765 479999999999999999999999999988889999999999999999999985
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.92 E-value=9.4e-25 Score=159.55 Aligned_cols=147 Identities=19% Similarity=0.155 Sum_probs=110.6
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|++++|||++|+|+.+..|+++|+.+|+..+++++++|+.+...... .+. ....... ...+...+..+
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~-------~~~--~~~~~~~---~~~~~~~~~~~ 68 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEM-------TTL--LSPDERE---AMRQGVISQRT 68 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhh-------hcc--cchhHHH---HHHHHHHHHHH
Confidence 45899999999999999999999999999999999999986543211 000 0000000 00011111123
Q ss_pred hHHHHHHHHhhhcCceEEEEEe-eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVY-WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.++.+.+.+...+++++..+. .|++.++|.+++++.++||||||+++.+++.+.++||++.+|+++++||||++|...
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~ 148 (305)
T PRK11175 69 AWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQD 148 (305)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecccc
Confidence 3344444455567888888766 589999999999999999999999999889999999999999999999999999754
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.91 E-value=5.4e-24 Score=136.29 Aligned_cols=123 Identities=19% Similarity=0.234 Sum_probs=103.0
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+||||+|+++.+..++++|+.+|+..+++|+++|+.++.... ..+..++.++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~----------------------------~~~~~~~~l~ 52 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR----------------------------LSEAERRRLA 52 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc----------------------------CCHHHHHHHH
Confidence 699999999999999999999999999999999998764210 0011234556
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEe
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVK 157 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~ 157 (164)
.+.+.+.+.++++.. +..|++.++|.+++++.++|+||||+++++++.++++||++++|++++ +|||||++
T Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 53 EALRLAEELGAEVVT-LPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred HHHHHHHHcCCEEEE-EeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 666666667776543 456799999999999999999999999999999999999999999999 99999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.88 E-value=1.2e-21 Score=143.13 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=105.0
Q ss_pred CCcEEEEEecCChhh-------HHHHHHHHHHhccC-CCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhh
Q 031202 3 KARTVGVGMDNSPNS-------KAALRWAADNLIDS-GDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQ 74 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s-------~~al~~a~~la~~~-~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (164)
.+++||+++|+++.+ ..++++|..+|+.. +++++++|+.+....... .+.+......+..
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~------~~~~~~~~~~~~~------ 218 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIA------IELPEFDPSVYND------ 218 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhcc------ccccccchhhHHH------
Confidence 368999999998653 67999999999998 999999999875432110 0000000011111
Q ss_pred hcCCCChhHHHHHHHHhhhcCceE-EEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccE
Q 031202 75 YGLTSNPEVLDILDTLSRTKGAKV-VAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPV 153 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pV 153 (164)
...++..+.+.++....++.. ...+..|++.++|.+++++.++||||||+++++++.++++||++++|+++++|||
T Consensus 219 ---~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pV 295 (305)
T PRK11175 219 ---AIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDL 295 (305)
T ss_pred ---HHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCE
Confidence 011223344555555556654 3557789999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 031202 154 TVVKGNP 160 (164)
Q Consensus 154 liv~~~~ 160 (164)
|++|++.
T Consensus 296 Lvv~~~~ 302 (305)
T PRK11175 296 LAIKPDG 302 (305)
T ss_pred EEEcCCC
Confidence 9998644
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.87 E-value=5.1e-21 Score=122.55 Aligned_cols=130 Identities=37% Similarity=0.560 Sum_probs=106.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|||++|+++.+..++++|..+|+..+++|+++|+.+...... . .. .+......++.++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~-----------~----~~------~~~~~~~~~~~l~ 59 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA-----------A----EL------AELLEEEARALLE 59 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc-----------h----hH------HHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999987764321 0 00 0001112345566
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.+...+...++++...+..|++.++|.+++++.++|++|||+++++.+.+.++|+++.+++++++||||++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 60 ALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 66666666789998888889889999999999999999999998888888999999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.86 E-value=4.8e-20 Score=121.61 Aligned_cols=148 Identities=29% Similarity=0.382 Sum_probs=116.5
Q ss_pred CCCcEEEEEec-CChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 2 SKARTVGVGMD-NSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 2 ~~~~~ILv~~d-~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
+++++||+++| +++.+..+++.+..++...+..++++++.+......... ....... ............
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~ 72 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVS-------VALADAP---IPLSEEELEEEA 72 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccc-------cccccch---hhhhHHHHHHHH
Confidence 46899999999 999999999999999999999999999987775432100 0000000 001111112334
Q ss_pred hhHHHHHHHHhhhcCce-EEEEEeeCCh-hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAK-VVAKVYWGDP-REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~v~~g~~-~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
++..+.+.+.....+++ +...+..|++ .+.|..++.+.++|+||||+++++++.++++||++++++++++|||+++|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~~ 152 (154)
T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVRS 152 (154)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEcc
Confidence 67777778888888888 4888999988 799999999999999999999999999999999999999999999999987
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 153 ~ 153 (154)
T COG0589 153 E 153 (154)
T ss_pred C
Confidence 5
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.74 E-value=4.8e-17 Score=120.04 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=90.1
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccC--CCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDS--GDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLT 78 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|+++++||||+|+|+.++.|+++|+++|+.. +++|+++||.+...... . .... . .
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~--------~-----~~~~------~----~ 58 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP--------E-----GQDE------L----A 58 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc--------c-----hhHH------H----H
Confidence 6789999999999999999999999999984 69999999998643211 0 0000 0 1
Q ss_pred CChhHHHHHHHHhhh------cCceEEEEEee--------CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhH
Q 031202 79 SNPEVLDILDTLSRT------KGAKVVAKVYW--------GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNH 144 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~------~~~~~~~~v~~--------g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~ 144 (164)
..++.++.+.+.+.. .|+++++.+.. |++.++|+++|++.++|+||||..-..+...-++. -.+.
T Consensus 59 ~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~-~~~~ 137 (357)
T PRK12652 59 AAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQ-PLER 137 (357)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccc-hHHH
Confidence 123344444444443 58998888765 89999999999999999999997633322222222 2344
Q ss_pred HhcCCCccEEE
Q 031202 145 VVTNSSCPVTV 155 (164)
Q Consensus 145 v~~~~~~pVli 155 (164)
-+.++.|.+=.
T Consensus 138 ~~~~~~~~~~~ 148 (357)
T PRK12652 138 ELARAGITYEE 148 (357)
T ss_pred HHHhcCCceec
Confidence 44555554433
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.55 E-value=1.4e-13 Score=113.23 Aligned_cols=124 Identities=14% Similarity=0.162 Sum_probs=99.9
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+||||+++++.++.++++|.++|...+++++++||..+..... . .+..+.+.
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~---------------~------------~~~~~~l~ 303 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL---------------P------------EKKRRAIL 303 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC---------------C------------HHHHHHHH
Confidence 57999999999999999999999999999999999997643210 0 01112333
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEEEeCC
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTVVKGN 159 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVliv~~~ 159 (164)
+.+ +.+++.|.++.. +..+++.++|+++|++++++.||||.+.+++| ++.||+++++++.++ +.|.||+..
T Consensus 304 ~~~-~lA~~lGa~~~~-~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 304 SAL-RLAQELGAETAT-LSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred HHH-HHHHHcCCEEEE-EeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 344 477788988653 55569999999999999999999999887765 556899999999998 999999754
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.51 E-value=3.4e-13 Score=106.46 Aligned_cols=127 Identities=19% Similarity=0.263 Sum_probs=111.4
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+||||+++++++...+++|.++|...+++++++||..+.....+ +..+..+
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~----------------------------~~~~~~l 300 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLS----------------------------EKEARRL 300 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccccc----------------------------HHHHHHH
Confidence 589999999999999999999999999999999999988753210 2345677
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEEEeCCC
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTVVKGNP 160 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVliv~~~~ 160 (164)
+...+.+++.|-++.+ +..+++.++|.++|+.+++.-||||.+.+++|..++.|+.++++++..+ ..|.|++...
T Consensus 301 ~~~~~Lae~lGae~~~-l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~ 376 (890)
T COG2205 301 HENLRLAEELGAEIVT-LYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDA 376 (890)
T ss_pred HHHHHHHHHhCCeEEE-EeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCC
Confidence 7888888888999886 5567999999999999999999999999999988889999999999998 9999998644
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.81 E-value=3.2e-08 Score=58.98 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=71.8
Q ss_pred EEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHH
Q 031202 7 VGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDI 86 (164)
Q Consensus 7 ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
||++++++.+|..++.++.+++ ..+..++++++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999987 557777777765
Q ss_pred HHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeec-cchhHHhcCCCccEEE
Q 031202 87 LDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLG-SVSNHVVTNSSCPVTV 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~g-s~~~~v~~~~~~pVli 155 (164)
...+.+.+.+++.++|+|++|++.....+..+.| +++..+++.+++||+.
T Consensus 35 -------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 -------------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred -------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 5567888889999999999999987777777777 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=98.26 E-value=3.7e-05 Score=63.66 Aligned_cols=145 Identities=11% Similarity=0.186 Sum_probs=92.0
Q ss_pred cEEEEEecCChhhHHHHHHHHHH--hccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhh-hhhhcCCCCh
Q 031202 5 RTVGVGMDNSPNSKAALRWAADN--LIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINF-SKQYGLTSNP 81 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~l--a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (164)
-|||+|+...++....++.+... .+.....++++|..+-.....+- ....+...... .........+
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~----------l~~h~~~~~~~~~~~~~~~~~~ 528 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAM----------LIVHNTRKSGRPALNRTQAQSD 528 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccc----------eeeeeccccccccccccccccc
Confidence 38999999888888777765443 22345699999998865432210 00000000000 0000112345
Q ss_pred hHHHHHHHHhhhc-CceEEEEEe---eCChhhHHHHHHHhcCCCEEEEeecCCccccc------eeeccchhHHhcCCCc
Q 031202 82 EVLDILDTLSRTK-GAKVVAKVY---WGDPREKLCDAVEDLKLDTLVVGSRGLGALKR------VLLGSVSNHVVTNSSC 151 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~v~---~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~------~~~gs~~~~v~~~~~~ 151 (164)
++...++.+.+.. ++.++.... ..+..++|++.|++.++++|+++.+.+....+ -.++.+.++|++++||
T Consensus 529 ~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApC 608 (832)
T PLN03159 529 HIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPC 608 (832)
T ss_pred HHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCC
Confidence 6777777666543 566664422 24889999999999999999999875433222 2456788999999999
Q ss_pred cEEEEeCC
Q 031202 152 PVTVVKGN 159 (164)
Q Consensus 152 pVliv~~~ 159 (164)
+|-|.=++
T Consensus 609 sVgIlVDR 616 (832)
T PLN03159 609 SVGILVDR 616 (832)
T ss_pred CEEEEEeC
Confidence 99988543
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.81 E-value=0.00065 Score=46.40 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=68.9
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|+++|..+|..++..+.+++...+.++.++|+...-.. ...+..+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~--------------------------------~~~~~~~ 48 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP--------------------------------ESDEEAE 48 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh--------------------------------hHHHHHH
Confidence 58999999999999999988887777888999998765321 1134466
Q ss_pred HHHHHhhhcCceEEEEEee-C--------Chh--------hHHHHHHHhcCCCEEEEeecCC
Q 031202 86 ILDTLSRTKGAKVVAKVYW-G--------DPR--------EKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~-g--------~~~--------~~I~~~a~~~~~dliv~g~~~~ 130 (164)
.+.+.++..|+++...-.. . +.. ..+.+.+++++++.|+.|++..
T Consensus 49 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 49 FVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 7777888888876654221 1 122 5778889999999999998743
No 20
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.72 E-value=0.0017 Score=44.15 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=65.0
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|+++|..+|-.++..+..+....+.++.++||...-... .....+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~--------------------------------s~~~~~ 48 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREE--------------------------------SDEEAE 48 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCC--------------------------------HHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--------------------------------cchhHH
Confidence 689999999999999999999999889999999999775321 245567
Q ss_pred HHHHHhhhcCceEEEEEee-----C-Ch--------hhHHHHHHHhcCCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKVYW-----G-DP--------REKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~-----g-~~--------~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.++|...|+++...... + +. -+.+.+.|.+.+++.|++|++.
T Consensus 49 ~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 49 FVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred HHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 8888999999887765322 1 11 1567788999999999999874
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.49 E-value=0.0036 Score=42.46 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=68.2
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|+++|..+|..++..+..+....+.++.++|+...... ...+..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~--------------------------------~~~~~~~ 48 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP--------------------------------ESDEEAA 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc--------------------------------hHHHHHH
Confidence 58999999999999999998887766789999999755321 1135667
Q ss_pred HHHHHhhhcCceEEEEE-ee--CC-h----------hhHHHHHHHhcCCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKV-YW--GD-P----------REKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v-~~--g~-~----------~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+.+...|+++.... .. +. . ...+.+.+++++++.|+.|++.
T Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~ 106 (185)
T cd01992 49 FVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHA 106 (185)
T ss_pred HHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 77788888888777541 11 11 1 1557788999999999999874
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.47 E-value=0.0018 Score=53.88 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=37.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.++|.++.=|.++++.|+.+|.++|.+.+-+++++++....
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~ 670 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGE 670 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEccc
Confidence 35899999999999999999999999999999999998654
No 23
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.03 E-value=0.023 Score=38.46 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=63.2
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccC--CCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDS--GDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+|+|+++|..+|-.++..+.++.... +.+++++|+....... ....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~--------------------------------~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGY--------------------------------RDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCC--------------------------------cHHH
Confidence 58999999999998888888876655 6788999988654211 1233
Q ss_pred HHHHHHHhhhcCceEEEEEee-------------C---------ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW-------------G---------DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~-------------g---------~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+++.+...|+++...-.. + .....+.+.+++++++.|+.|++.
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 455566666667765543211 0 112566778999999999999874
No 24
>PRK12342 hypothetical protein; Provisional
Probab=96.89 E-value=0.011 Score=42.48 Aligned_cols=104 Identities=19% Similarity=0.077 Sum_probs=66.9
Q ss_pred CChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhh
Q 031202 13 NSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSR 92 (164)
Q Consensus 13 ~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (164)
-++++.+|++.|+++. ..+.+++++++-++... ...++..+-....
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~---------------------------------~~~l~r~alamGa 78 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQ---------------------------------NSKVRKDVLSRGP 78 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHh---------------------------------HHHHHHHHHHcCC
Confidence 4677899999999998 57899999999887521 1112222222333
Q ss_pred hcCceEEEEEeeC-Ch---hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 93 TKGAKVVAKVYWG-DP---REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 93 ~~~~~~~~~v~~g-~~---~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
+.++.+.-....| |+ +..|...++..++|||+.|....-.. -|.+.-.+......|.+
T Consensus 79 D~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~----tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 79 HSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLY----AQQVGLLLGELLQLPVI 140 (254)
T ss_pred CEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCC----CCCHHHHHHHHhCCCcE
Confidence 3445554333334 55 68888899988999999996543221 24555666666666544
No 25
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=96.70 E-value=0.02 Score=41.11 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=66.6
Q ss_pred CChhhHHHHHHHHHHhccCC-CeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHh
Q 031202 13 NSPNSKAALRWAADNLIDSG-DLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLS 91 (164)
Q Consensus 13 ~s~~s~~al~~a~~la~~~~-~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
-++++.+|++.|+++....+ .+++++++-++... ....+..+-...
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------------------------------~~~~lr~aLAmG 80 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------------------------------NAKGRKDVLSRG 80 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------------------------------hHHHHHHHHHcC
Confidence 46778999999999988765 89999999887521 112333333333
Q ss_pred hhcCceEEEEEeeC-C---hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 92 RTKGAKVVAKVYWG-D---PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 92 ~~~~~~~~~~v~~g-~---~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
.+.++.+.-....| | .+..|...++..++|||+.|.....+. .|.+.-.+......|.+
T Consensus 81 aD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~----tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 81 PDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLY----AQQVGLLVGEILNIPAI 143 (256)
T ss_pred CCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCC----CCcHHHHHHHHhCCCce
Confidence 33444444332233 3 367888888888999999996543321 24455556666655543
No 26
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.052 Score=39.73 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=64.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+|+|+++|..+|-.++..+..+... .++.++||...-... .....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~--------------------------------~~~~~ 67 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGY--------------------------------SDQEA 67 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCc--------------------------------cchHH
Confidence 58999999999999888887777655 899999998776421 24555
Q ss_pred HHHHHHhhhcCceEEEE-Ee--eC-C------h--------hhHHHHHHHhcCCCEEEEeecCCc
Q 031202 85 DILDTLSRTKGAKVVAK-VY--WG-D------P--------REKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~-v~--~g-~------~--------~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+.....+...++..... +. .+ . + -..+.+.+++.++|.|+.|++...
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD 132 (298)
T COG0037 68 ELVEKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDD 132 (298)
T ss_pred HHHHHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHH
Confidence 56666777666532221 11 11 1 1 245777899999999999987543
No 27
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=96.31 E-value=0.13 Score=34.30 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=59.8
Q ss_pred EEEEEecCC-----hhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 6 TVGVGMDNS-----PNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 6 ~ILv~~d~s-----~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
+|||..+-. +.+..++..|.+++...+.+++++.+-+..
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~------------------------------------ 44 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAE------------------------------------ 44 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCC------------------------------------
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecch------------------------------------
Confidence 466766643 788999999999999999999999988322
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC--------ChhhHHHHHHHhcCCCEEEEeecCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG--------DPREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g--------~~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
...+.+++.+...|..--..+... ...+.|.+.+++.++|+|++|+...
T Consensus 45 -~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 45 -EAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp -CHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHH
T ss_pred -hhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 334444555555565433222111 2467889999999999999997543
No 28
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=96.14 E-value=0.061 Score=38.71 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=68.1
Q ss_pred cCChhhHHHHHHHHHHhc-cCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHH
Q 031202 12 DNSPNSKAALRWAADNLI-DSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTL 90 (164)
Q Consensus 12 d~s~~s~~al~~a~~la~-~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (164)
.-++.+..|++.|++|.. ..+.+++++++-++.. +..+..+-..
T Consensus 34 ~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------------------------~~~lr~aLAm 78 (260)
T COG2086 34 SINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------------------------EEALREALAM 78 (260)
T ss_pred ccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------------------------HHHHHHHHhc
Confidence 345778999999999999 6899999999987752 3333332223
Q ss_pred hhhcCceEEEEEeeC----ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 91 SRTKGAKVVAKVYWG----DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 91 ~~~~~~~~~~~v~~g----~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
..+..+-++-+...+ ..+..|...++..+.|||+.|...-.+ --|.+...+......|.+-
T Consensus 79 GaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~----~t~qvg~~lAe~Lg~P~~t 143 (260)
T COG2086 79 GADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDG----DTGQVGPLLAELLGWPQVT 143 (260)
T ss_pred CCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccC----CccchHHHHHHHhCCceee
Confidence 223344444322233 346888889999999999999653322 1345555566666665543
No 29
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=96.08 E-value=0.22 Score=35.85 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=60.5
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccC--CCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDS--GDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+|+|+++|..+|-.++..+..+.... +-++..+|+...... ...+
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~--------------------------------~~~~ 77 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG--------------------------------FPEH 77 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC--------------------------------CCHH
Confidence 589999999999998888887776543 347888887643210 0011
Q ss_pred HHHHHHHHhhhcCceEEEEEee-----------CC---------hhhHHHHHHHhcCCCEEEEeecC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW-----------GD---------PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~-----------g~---------~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+.|...|+++...-.. +. --..+.+.+++.++|.|++|++.
T Consensus 78 ---~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~ 141 (258)
T PRK10696 78 ---VLPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHR 141 (258)
T ss_pred ---HHHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCch
Confidence 3466777788876643111 10 11456678999999999999874
No 30
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=95.87 E-value=0.2 Score=38.98 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=50.2
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHh-ccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNL-IDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
-.+|+|+++|..+|-.++..+..+. ...+.+++++||...-.. ...+
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~--------------------------------~s~~ 62 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP--------------------------------NADS 62 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc--------------------------------chHH
Confidence 3689999999999988888777765 235789999999866531 1345
Q ss_pred HHHHHHHHhhhcCceEEEE
Q 031202 83 VLDILDTLSRTKGAKVVAK 101 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (164)
..+.+++.|...|+++...
T Consensus 63 ~~~~~~~~~~~l~i~~~~~ 81 (436)
T PRK10660 63 WVKHCEQVCQQWQVPLVVE 81 (436)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 5677888999999887754
No 31
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.65 E-value=0.27 Score=36.31 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=63.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.+++++++|..+|..++..+.......+.++.++|+...... .+.
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F----------------------------------pEt 72 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF----------------------------------PEM 72 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC----------------------------------HHH
Confidence 5689999999999998888887765444567899999866532 234
Q ss_pred HHHHHHHhhhcCceEEEEEe-----eC-C-------------hhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVY-----WG-D-------------PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~-----~g-~-------------~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+...+.+...|+++..... .| . -...+.+.++++++|.++.|.+.
T Consensus 73 ~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~Rr 137 (301)
T PRK05253 73 IEFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARR 137 (301)
T ss_pred HHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 44455566666776654311 11 0 02567788889999999999764
No 32
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.14 E-value=0.44 Score=32.85 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=62.4
Q ss_pred EEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHH
Q 031202 7 VGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDI 86 (164)
Q Consensus 7 ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
++|.-.|..-.-.+...|.++... +.++.++....-+ -.+.++
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R------------------------------------~ga~eQ 47 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYR------------------------------------IGAVEQ 47 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSS------------------------------------THHHHH
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCC------------------------------------ccHHHH
Confidence 455556666566778888888777 8888888875443 467888
Q ss_pred HHHHhhhcCceEEEEEeeCChhhHH---HHHHHhcCCCEEEEeecCCcccc
Q 031202 87 LDTLSRTKGAKVVAKVYWGDPREKL---CDAVEDLKLDTLVVGSRGLGALK 134 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g~~~~~I---~~~a~~~~~dliv~g~~~~~~~~ 134 (164)
++.+++..|+++...-...++.+.+ ++..+..++|+|++-+.|++...
T Consensus 48 L~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d 98 (196)
T PF00448_consen 48 LKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRD 98 (196)
T ss_dssp HHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTH
T ss_pred HHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhh
Confidence 8999999999877522233555544 45556677899999998887654
No 33
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=95.07 E-value=0.062 Score=36.63 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=27.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+++|++++.|+..+.++.++.-.|.+ .+.+++++-
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVLM 35 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 47999999999999998888777754 577766543
No 34
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=94.87 E-value=0.74 Score=33.05 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..++++|+++|.-+|-.++..+.+. +.++..+++..+
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~ 47 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSP 47 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCC
Confidence 3578999999999998877776653 667888888653
No 35
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=94.83 E-value=0.73 Score=30.74 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=51.7
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+++|.++|..+|-.++..+.+ .+.++..+++....... .-.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~~~~~~----------------------------------~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDYGQRHA----------------------------------KEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEECCCCCh----------------------------------hHHH
Confidence 588999999999877766654 34578888887542100 0112
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
.+...+...|.......+.......+.+.+.+.+++.|++|.+..
T Consensus 43 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 43 AAKLIAEKLGPSTYVPARNLIFLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHHHHHHCCCEEEeCcCHHHHHHHHHHHHHCCCCEEEEeeccC
Confidence 333333333422221111112335567788999999999998753
No 36
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.82 E-value=0.19 Score=39.28 Aligned_cols=86 Identities=13% Similarity=-0.108 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
+-.||..|++.|...+.+|..+++.++..... .........+.+..+.+.+++.|.
T Consensus 37 DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~------------------------~~~r~~Fl~esL~~L~~~L~~~g~ 92 (454)
T TIGR00591 37 DNWALIAAQTLALKKKLPLHVCFCLVDFFLAA------------------------TRRHYFFMLGGLDEVANECERLII 92 (454)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEEeCCCcccc------------------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34578888887766677899999997753210 001112345667777788888888
Q ss_pred eEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 97 KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 97 ~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+. +..|++.+.|.+.+++.+++.|+....
T Consensus 93 ~L~--v~~g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 93 PFH--LLDGPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred ceE--EeecChHHHHHHHHHHcCCCEEEEecc
Confidence 776 668999999999999999999999764
No 37
>PRK13820 argininosuccinate synthase; Provisional
Probab=94.77 E-value=1.1 Score=34.45 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=29.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCC-eEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGD-LIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~-~l~ll~v~~~ 43 (164)
+++|+|+++|.-+|-.++.++.+ .++. +++.+|+...
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd~g 39 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVDVG 39 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEECC
Confidence 57999999999999888877543 3564 8999999754
No 38
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=94.35 E-value=0.73 Score=31.17 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=25.6
Q ss_pred EEEEEec---------CChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 6 TVGVGMD---------NSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 6 ~ILv~~d---------~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+|||.++ ..+.+..++..|.+++. .+..++++.+-..
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~ 46 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKE-YGGEVTALVIGPP 46 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhh-cCCeEEEEEECCh
Confidence 3666665 45667788888888876 5567777776543
No 39
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=94.27 E-value=1.8 Score=32.90 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=58.0
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.-.+|+|+++|.-+|..++..+.+ .+.+++.+|+....... ..+
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~~~~~~--------------------------------~~~ 47 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRFYEFNG--------------------------------STE 47 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEecCCCCC--------------------------------ChH
Confidence 446999999999999776655443 47788888887432100 122
Q ss_pred HHHHHHHHhhhcCceEEEEEe-----------------eC----------C-h-hhHHHHHHHhcCCCEEEEeecCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVY-----------------WG----------D-P-REKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~-----------------~g----------~-~-~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
..+.+++.|+..|+++...-. .| . . ...+.++|++.++|.|+.|++-+
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 344555566666665443211 01 1 1 24667889999999999997753
No 40
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=94.19 E-value=0.48 Score=32.87 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=49.9
Q ss_pred HHHHhhhcCceEEEEEeeC---Ch---hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 87 LDTLSRTKGAKVVAKVYWG---DP---REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g---~~---~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.+++.+.++.+.+ +..| +| ...+.+..++.++|++|+++.+.... ..+.+..++..++.|.+|+.+.+
T Consensus 23 lDErAdRedi~vrV-vgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaP----GP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 23 LDERADREDIEVRV-VGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAP----GPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHhhcccCCceEEE-eccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC----CchHHHHHHhhcCCCEEEecCCc
Confidence 34556667787775 3333 33 35667778999999999987754322 35678999999999999998765
No 41
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=93.96 E-value=1.4 Score=30.38 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=55.3
Q ss_pred EEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHH
Q 031202 7 VGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDI 86 (164)
Q Consensus 7 ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
|+|+++|..+|..++..+... .+.++..+|+..... .....+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~---~~~~v~~v~vd~g~~----------------------------------~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDA---LGDRVLAVTATSPLF----------------------------------PRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHH---hCCcEEEEEeCCCCC----------------------------------CHHHHHH
Confidence 588999999998777766554 223788888875531 1234455
Q ss_pred HHHHhhhcCceEEEEEee-------------------CChhhHHHHHHHhcCCCEEEEeecC
Q 031202 87 LDTLSRTKGAKVVAKVYW-------------------GDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~-------------------g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+++.+...|++....-.. .-....+.+.+++.+++.|+.|++.
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred HHHHHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 556666666655433111 0123466778999999999999764
No 42
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=93.95 E-value=1.5 Score=32.32 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=61.3
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.+.++++++.++|-.++..+.......+.++.++|+...-.+ .+.
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F----------------------------------~Et 64 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF----------------------------------REM 64 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC----------------------------------HHH
Confidence 4567788999999998888887765544668999999876542 234
Q ss_pred HHHHHHHhhhcCceEEEEEe-----eC-Ch-------------hhHHHHHHHhcCCCEEEEeec
Q 031202 84 LDILDTLSRTKGAKVVAKVY-----WG-DP-------------REKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~-----~g-~~-------------~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+...+.++..|+++.+... .| ++ .+.+.+.++++++|.++.|.+
T Consensus 65 ~efrd~~a~~~gl~l~v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~R 128 (294)
T TIGR02039 65 IAFRDHMVAKYGLRLIVHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGAR 128 (294)
T ss_pred HHHHHHHHHHhCCCEEEEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCC
Confidence 44444555556666554311 11 01 145777788899999999965
No 43
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.68 Score=30.46 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC----ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG----DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g----~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
..+...+.+.+.|+.++.+|.+- +...+..+.+++.++..||-|..+...+.+ -+.-.++.||+=||-
T Consensus 17 ~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPG--------mvAa~T~lPViGVPv 88 (162)
T COG0041 17 TMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPG--------MVAAKTPLPVIGVPV 88 (162)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcch--------hhhhcCCCCeEeccC
Confidence 34455566677799999998764 234556666788888889998877655433 256678899999987
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
.+
T Consensus 89 ~s 90 (162)
T COG0041 89 QS 90 (162)
T ss_pred cc
Confidence 64
No 44
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=93.77 E-value=1.2 Score=29.21 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=28.2
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+|+|+++|..+|..++..+.+..... .++.++++....
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCCC
Confidence 47899999999988888776654432 477888886654
No 45
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=93.44 E-value=0.3 Score=33.16 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=25.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
++|+|++.|+..+.++.+..-.|. ..+.+++++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~-~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLT-KLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 589999999999988887666654 4577766543
No 46
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=93.29 E-value=0.31 Score=33.40 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=25.7
Q ss_pred cEEEEEecCChhhHHHH-HHHHHHhccCCCeEEEEE
Q 031202 5 RTVGVGMDNSPNSKAAL-RWAADNLIDSGDLIILIH 39 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al-~~a~~la~~~~~~l~ll~ 39 (164)
++|++++.|+..+.++. +..-.| ...|.+++++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCcCEEEEEE
Confidence 58999999999999886 655555 45577766554
No 47
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=93.27 E-value=0.71 Score=38.64 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=37.1
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNAD 46 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~ 46 (164)
.+|.+..=+.++++.|+.++.+++.+.+..++++........
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~ 656 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESK 656 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchh
Confidence 367778888899999999999999999999999999987753
No 48
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=93.16 E-value=0.94 Score=30.02 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-Ch---hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DP---REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~---~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++.+.++..|++++.+|..- .. ...+.+.+++.+++.+|.+...... .+.-+.-.++.||+=||
T Consensus 12 ~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~--------Lpgvva~~t~~PVIgvP 83 (156)
T TIGR01162 12 PTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAH--------LPGMVAALTPLPVIGVP 83 (156)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccch--------hHHHHHhccCCCEEEec
Confidence 445566667778899999887664 33 3455555566778877777654433 35557778899999999
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 84 ~~~ 86 (156)
T TIGR01162 84 VPS 86 (156)
T ss_pred CCc
Confidence 754
No 49
>PRK10867 signal recognition particle protein; Provisional
Probab=93.00 E-value=2.5 Score=32.96 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=56.4
Q ss_pred EEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHH
Q 031202 8 GVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDIL 87 (164)
Q Consensus 8 Lv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
++...|+.-+-.+...|..+++..+.++.++....-+ ..+.+++
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R------------------------------------~aa~eQL 148 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR------------------------------------PAAIEQL 148 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc------------------------------------hHHHHHH
Confidence 3344555556667777777766557777777665433 2344556
Q ss_pred HHHhhhcCceEEEEEeeCChh---hHHHHHHHhcCCCEEEEeecCCcccc
Q 031202 88 DTLSRTKGAKVVAKVYWGDPR---EKLCDAVEDLKLDTLVVGSRGLGALK 134 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~---~~I~~~a~~~~~dliv~g~~~~~~~~ 134 (164)
..++...++++.......+|. ...++.++..++|+|++-+.|+....
T Consensus 149 ~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d 198 (433)
T PRK10867 149 KTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHID 198 (433)
T ss_pred HHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccC
Confidence 666677787765432223543 33445667778999999888876543
No 50
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=92.66 E-value=0.47 Score=36.52 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=28.9
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
|+..++|++++.|+..+..+.++.-.|- ..+.++.++-
T Consensus 3 ~l~~k~IllgvTGsiaa~k~~~lv~~L~-~~g~~V~vv~ 40 (399)
T PRK05579 3 MLAGKRIVLGVSGGIAAYKALELVRRLR-KAGADVRVVM 40 (399)
T ss_pred CCCCCeEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEE
Confidence 3456899999999999988888877764 4677766554
No 51
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=92.03 E-value=0.37 Score=32.08 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=65.0
Q ss_pred HHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCceE
Q 031202 19 AALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAKV 98 (164)
Q Consensus 19 ~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
.||..| ...+.++..+++.++..... ...... ......+.+..+++.++..|+..
T Consensus 15 ~aL~~A----~~~~~~v~~vfv~d~~~~~~----------~~~~~~-----------r~~Fl~~sL~~L~~~L~~~g~~L 69 (165)
T PF00875_consen 15 PALHAA----AQNGDPVLPVFVFDPEEFHP----------YRIGPR-----------RRRFLLESLADLQESLRKLGIPL 69 (165)
T ss_dssp HHHHHH----HHTTSEEEEEEEE-HHGGTT----------CSSCHH-----------HHHHHHHHHHHHHHHHHHTTS-E
T ss_pred HHHHHH----HHcCCCeEEEEEeccccccc----------ccCcch-----------HHHHHHHHHHHHHHHHHhcCcce
Confidence 455555 44678899999998872110 000001 11234566777777777778776
Q ss_pred EEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 99 VAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 99 ~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
. +..|++.+.|.+.+++.+++.|+.... .+.... -.-....+.+...++++..+..
T Consensus 70 ~--v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~-~rd~~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 70 L--VLRGDPEEVLPELAKEYGATAVYFNEE-YTPYER-RRDERVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp E--EEESSHHHHHHHHHHHHTESEEEEE----SHHHH-HHHHHHHHHHHHTTSEEEEE--
T ss_pred E--EEecchHHHHHHHHHhcCcCeeEeccc-cCHHHH-HHHHHHHHHHHhcceEEEEECC
Confidence 6 779999999999999999999998754 332221 1122344455555677766654
No 52
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=92.00 E-value=2.4 Score=31.41 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
|+-.....+....+ +|+||+.+.... ..+.+.+++++||+=-
T Consensus 85 gEsl~Dt~~~l~~~-~D~iv~R~~~~~---------~~~~~a~~~~vPVINa 126 (304)
T PRK00779 85 GEPIEDTARVLSRY-VDAIMIRTFEHE---------TLEELAEYSTVPVING 126 (304)
T ss_pred CcCHHHHHHHHHHh-CCEEEEcCCChh---------HHHHHHHhCCCCEEeC
Confidence 54455556666666 899999765332 4667788899998743
No 53
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=92.00 E-value=2.9 Score=28.84 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=55.0
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+|.|-++++.....++-.|+. ....++++.++....+. ...+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~------------------------------------A~~l 43 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKAD------------------------------------AYAL 43 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCC------------------------------------CHHH
Confidence 3788888988888778877877 44456666665554432 1222
Q ss_pred HHHHHHhhhcCceEEEEEeeC-----ChhhHHHHHHHhcCCCEEEEee
Q 031202 85 DILDTLSRTKGAKVVAKVYWG-----DPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g-----~~~~~I~~~a~~~~~dliv~g~ 127 (164)
++++.+|++....-+.+ ....+|.+..++.++|+||+..
T Consensus 44 ----erA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 44 ----ERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred ----HHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 34455687765432222 2678999999999999999964
No 54
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=91.77 E-value=0.55 Score=32.42 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCCcEEEEEecCChhhHH-HHHHHHHHhccCCCeEEEEE
Q 031202 2 SKARTVGVGMDNSPNSKA-ALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~-al~~a~~la~~~~~~l~ll~ 39 (164)
+.-++|++++.|+..+.+ +.+.+-.|. ..|.+++++-
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~-k~G~~V~vv~ 40 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLV-DEGAEVTPIV 40 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHH-hCcCEEEEEE
Confidence 345799999999999998 588776664 4577766554
No 55
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=91.76 E-value=3.9 Score=30.48 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=34.2
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNAD 46 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~ 46 (164)
+.++.++.++.++|..++..+.......+.++-+||+.....+
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~F 79 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKF 79 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCC
Confidence 4578899999999999998888776555668899999776543
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.34 E-value=0.69 Score=34.38 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=32.8
Q ss_pred EeeC-ChhhHHHHHHHhc-------CCCEEEEeecCCccccceee-ccchhHHhcCCCccEEEE
Q 031202 102 VYWG-DPREKLCDAVEDL-------KLDTLVVGSRGLGALKRVLL-GSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 102 v~~g-~~~~~I~~~a~~~-------~~dliv~g~~~~~~~~~~~~-gs~~~~v~~~~~~pVliv 156 (164)
.+.| +....|++..+.. ++|+|||++.|.+...-+.| .-..-.-+..+++||+.-
T Consensus 50 ~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 50 SVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISA 113 (319)
T ss_pred cccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEe
Confidence 3456 5666676665543 48999999765443221222 223444566788998763
No 57
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=91.19 E-value=1.2 Score=29.45 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=44.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHh---cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVED---LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~---~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
....+++.+.+++.|+.++.++..- .-.+.+.+++++ .+++.+|.+.-..+. .+.-+.-.++.||+=|
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~--------Lpgvva~~t~~PVIgv 84 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAA--------LPGVVASLTTLPVIGV 84 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS----------HHHHHHHHSSS-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCccc--------chhhheeccCCCEEEe
Confidence 3556677777888899999887765 344555555554 456877776554333 3445667779999999
Q ss_pred eCCC
Q 031202 157 KGNP 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 85 P~~~ 88 (150)
T PF00731_consen 85 PVSS 88 (150)
T ss_dssp EE-S
T ss_pred ecCc
Confidence 8544
No 58
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=91.13 E-value=5.6 Score=30.41 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=28.7
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
-.++|+.++|.-+|..++-++.. .|.+++.+|+....
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~~ 208 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNEP 208 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 36899999999999876655533 47899999998543
No 59
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.09 E-value=5.8 Score=31.01 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=55.2
Q ss_pred EEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHH
Q 031202 8 GVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDIL 87 (164)
Q Consensus 8 Lv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
++...|+.-+-.+...|..+....+.++.++....-+. .+.+.+
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~------------------------------------~a~~QL 147 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP------------------------------------AAIEQL 147 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch------------------------------------HHHHHH
Confidence 44445555566777777776655677777776654331 234456
Q ss_pred HHHhhhcCceEEEEEeeCChh---hHHHHHHHhcCCCEEEEeecCCccc
Q 031202 88 DTLSRTKGAKVVAKVYWGDPR---EKLCDAVEDLKLDTLVVGSRGLGAL 133 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~---~~I~~~a~~~~~dliv~g~~~~~~~ 133 (164)
..++...++++.......+|. ...++.+...++|+|++-+.|+...
T Consensus 148 ~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~ 196 (428)
T TIGR00959 148 KVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQI 196 (428)
T ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcccc
Confidence 666666677765432223553 3345556677889999988887654
No 60
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=90.71 E-value=2.3 Score=30.21 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHhhhcCceEEEEEeeC------ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 87 LDTLSRTKGAKVVAKVYWG------DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g------~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.+++.+.++.+.+ +..| +..+......++.++|++|+.+.+..- -...-++.++.....|.+|+.+.+
T Consensus 23 lDErAdRedI~vrv-~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~----PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 23 LDERADREDIDVRV-VGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAA----PGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHhhhcccCceEEE-eccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCC----CCchHHHHHHHhcCCCEEEEcCCC
Confidence 34555566776664 3343 223445556688899999998765332 134579999999999999998776
Q ss_pred CC
Q 031202 161 VS 162 (164)
Q Consensus 161 ~~ 162 (164)
..
T Consensus 98 ~~ 99 (277)
T PRK00994 98 GK 99 (277)
T ss_pred cc
Confidence 44
No 61
>PLN00200 argininosuccinate synthase; Provisional
Probab=90.66 E-value=6.6 Score=30.44 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=29.8
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.++|+|+++|.-+|..++.++.+ ..+.+++.+++...
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 57999999999999888777655 24778999998755
No 62
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=90.51 E-value=1.5 Score=34.61 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=28.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-++|++++.|+-.+.++.+..-.|.+ .|..|+++-
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k-~G~~V~Vvm 104 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKE-RGAHVRCVL 104 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHh-CcCEEEEEE
Confidence 47999999999999999998777754 577766554
No 63
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=90.51 E-value=2.6 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=25.9
Q ss_pred EEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 7 VGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 7 ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
|+|+++|..+|-.++..+.++ +.++.++|+....
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----GYQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 589999999998877776664 2378888887664
No 64
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.38 E-value=6.5 Score=30.74 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=54.6
Q ss_pred EEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHH
Q 031202 8 GVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDIL 87 (164)
Q Consensus 8 Lv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
++...|+.-+-.+...|..+. ..|.++.++.....+ ..+.+++
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R------------------------------------~aA~eQL 147 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFR------------------------------------AGAFDQL 147 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccc------------------------------------hhHHHHH
Confidence 344455555555666666554 346677766543222 2455666
Q ss_pred HHHhhhcCceEEEEEeeCChhh---HHHHHHHhcCCCEEEEeecCCcccccee
Q 031202 88 DTLSRTKGAKVVAKVYWGDPRE---KLCDAVEDLKLDTLVVGSRGLGALKRVL 137 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~---~I~~~a~~~~~dliv~g~~~~~~~~~~~ 137 (164)
+.++...++++.......+|.. .-++.++..++|+|++-+.|+......+
T Consensus 148 k~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~l 200 (429)
T TIGR01425 148 KQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSL 200 (429)
T ss_pred HHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHH
Confidence 7777777777654333346543 3344556668899999888876554333
No 65
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=90.14 E-value=7.3 Score=30.11 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.4
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+|+|+++|.-+|..++.++.+. +.+++.+|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5899999999998888776553 778999999754
No 66
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=89.82 E-value=1.5 Score=34.64 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
+-.||..|++ .+.+|.++++.++..... ... .........+.+..+++.+...|+
T Consensus 15 DN~AL~~A~~----~~~~vl~vfi~dp~~~~~----------~~~-----------~~~r~~Fl~esL~~L~~~L~~~G~ 69 (471)
T TIGR03556 15 DNIGLAAARQ----QSAKVVGLFCLDPNILQA----------DDM-----------APARVAYLIGCLQELQQRYQQAGS 69 (471)
T ss_pred hHHHHHHHHh----cCCCEEEEEEEchhhhcc----------ccC-----------CHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3356666664 356799999988753211 000 000012345667777777777887
Q ss_pred eEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 97 KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 97 ~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+. ++.|++.+.|.+.+++.+++.|+....
T Consensus 70 ~L~--v~~G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 70 QLL--ILQGDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred CeE--EEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 775 668999999999999999999998654
No 67
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.81 E-value=8.1 Score=30.17 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=67.1
Q ss_pred EEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHH
Q 031202 7 VGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDI 86 (164)
Q Consensus 7 ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
.+|.+.|+.-.-.+...|..+-+ .+-++-++....-+ -.+.++
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~R------------------------------------pAA~eQ 146 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYR------------------------------------PAAIEQ 146 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCC------------------------------------hHHHHH
Confidence 45667777666667777777766 77777777665443 367778
Q ss_pred HHHHhhhcCceEEEEEeeCChh---hHHHHHHHhcCCCEEEEeecCCccccceee
Q 031202 87 LDTLSRTKGAKVVAKVYWGDPR---EKLCDAVEDLKLDTLVVGSRGLGALKRVLL 138 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g~~~---~~I~~~a~~~~~dliv~g~~~~~~~~~~~~ 138 (164)
++..+.+.++.+-......+|. ..=++.+++..+|++++-+.||-.+..-++
T Consensus 147 L~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm 201 (451)
T COG0541 147 LKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELM 201 (451)
T ss_pred HHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHH
Confidence 8888888888887653333555 555677888899999998888776655444
No 68
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=89.57 E-value=7 Score=29.12 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=28.3
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|+++|.-+|-.++..+.. ..|.+++.+|+...-
T Consensus 17 ~kVvValSGGVDSsvla~ll~~---~~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHR---AIGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHH---HhCCCEEEEEEeCCC
Confidence 6899999999988776655544 246789999998664
No 69
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=89.30 E-value=7.9 Score=29.31 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=26.2
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
++|+|+++|..+|..++..+.+ .+.++..+|+...
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~~ 35 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKLW 35 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 3899999999999776554433 4667889988754
No 70
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=89.19 E-value=5 Score=26.93 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=28.3
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+++|+++|..+|..++..+.+ .|.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 589999999999877776655 47889999998664
No 71
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=89.07 E-value=5.3 Score=27.51 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=53.1
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++++.++|..+|-.++.++.+ .+-++..++...+..... . -....-.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~--------------------------~--~~h~~~~e 48 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTPEEGSS--------------------------M--MYHTVNHE 48 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEecCCCCc--------------------------c--cccccCHH
Confidence 478999999999887777766 366777777665432110 0 00011345
Q ss_pred HHHHHhhhcCceEEEEEee---CChhhH----HHHHHHhcCCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKVYW---GDPREK----LCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~---g~~~~~----I~~~a~~~~~dliv~g~~~ 129 (164)
.++.+++..|++....-.. .+..+. +.+..++ +++.+|-|..-
T Consensus 49 ~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~ 98 (194)
T cd01994 49 LLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAIL 98 (194)
T ss_pred HHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEECccc
Confidence 5666777778876543221 123333 3333333 68999988753
No 72
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=88.34 E-value=1.1 Score=27.67 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=44.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
-....+++.+.+.|++++.. ..+. .++.+.....++|+|++|..-+-.. ......+..-++||.++++.
T Consensus 16 lla~k~k~~~~e~gi~~~i~--a~~~-~e~~~~~~~~~~DvIll~PQi~~~~------~~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVD--AITA-TEGEKAIAAAEYDLYLVSPQTKMYF------KQFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred HHHHHHHHHHHHCCCceEEE--EecH-HHHHHhhccCCCCEEEEChHHHHHH------HHHHHHhhhcCCCEEEeCHH
Confidence 44566677888889987643 3332 3455555666789999986633221 23555666778999998753
No 73
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=88.32 E-value=2.7 Score=32.67 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+.++.+++.++..|+... ++.|++.+.|.+.+++.+++.|+....
T Consensus 59 l~esL~~L~~~L~~~g~~L~--v~~G~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLL--VRSGKPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeE--EEeCCHHHHHHHHHHHhCCCEEEEecc
Confidence 45667777777887788775 668999999999999999999999754
No 74
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=87.67 E-value=1.5 Score=30.07 Aligned_cols=36 Identities=11% Similarity=-0.031 Sum_probs=29.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
|++|++++.|+-.+..+.+..-.|.+..+.+++++-
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~ 36 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVI 36 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 479999999999999999988888665677765543
No 75
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=87.07 E-value=4.4 Score=29.44 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=52.3
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|-|.+...+.+..-++-|-++.+.++.. .+.|+..|..+.. ..+....
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf~~------------------------------e~EttIs 52 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNFMS------------------------------EQETTIS 52 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTGGG------------------------------CHHHHHH
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCcccc------------------------------hHHHHHH
Confidence 56666666666666777788888777766 8899999986542 1344455
Q ss_pred HHHHHhhhcCceEEEEEee-CCh-hhHHHHHHHhcCCCEEEEeecCC
Q 031202 86 ILDTLSRTKGAKVVAKVYW-GDP-REKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~-g~~-~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
++...+.+..+++- |.. +.+ .-+-.+-+++.+.|+++++...+
T Consensus 53 kI~~lAdDp~mKaI--Vv~q~vpGt~~af~kIkekRpDIl~ia~~~~ 97 (275)
T PF12683_consen 53 KIVSLADDPDMKAI--VVSQAVPGTAEAFRKIKEKRPDILLIAGEPH 97 (275)
T ss_dssp HHHGGGG-TTEEEE--EEE-SS---HHHHHHHHHH-TTSEEEESS--
T ss_pred HHHHhccCCCccEE--EEeCCCcchHHHHHHHHhcCCCeEEEcCCCc
Confidence 55555555555544 443 322 23445567778889999986543
No 76
>PRK00074 guaA GMP synthase; Reviewed
Probab=86.83 E-value=15 Score=29.54 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=28.5
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|+++|.-+|..++..+.+. .+.+++.+|+....
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd~g~ 252 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVDHGL 252 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEeCCC
Confidence 68999999999997777666543 36789999997553
No 77
>PRK08576 hypothetical protein; Provisional
Probab=86.51 E-value=11 Score=29.59 Aligned_cols=34 Identities=26% Similarity=0.139 Sum_probs=25.6
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++|+++|..+|..++..+.+... .+.++++...
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG 269 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTG 269 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCC
Confidence 899999999999888876666432 3777777544
No 78
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=86.29 E-value=4.1 Score=27.62 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=24.1
Q ss_pred EEEEEecCChh-hHHHHHHHHHHhccCCCeEEEE
Q 031202 6 TVGVGMDNSPN-SKAALRWAADNLIDSGDLIILI 38 (164)
Q Consensus 6 ~ILv~~d~s~~-s~~al~~a~~la~~~~~~l~ll 38 (164)
||++++.+|.. .....+....+.++.|.+++++
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv 34 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVF 34 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 58999999944 3557788888877777776654
No 79
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=85.92 E-value=12 Score=27.59 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=28.3
Q ss_pred HhhhcCceEEEEEe----eCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 90 LSRTKGAKVVAKVY----WGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 90 ~~~~~~~~~~~~v~----~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+++.|+++...-. ..+....+.+..++.++|++|+....
T Consensus 132 lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 132 LVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred HHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecch
Confidence 36677888765211 12345678999999999999998653
No 80
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=85.92 E-value=9.4 Score=29.46 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=27.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-++|++++.|+..+..+++..-.|.+ .+.+++++-
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~-~g~~V~vv~ 37 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVR-QGAEVKVIM 37 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 37999999999999999888877744 577766543
No 81
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=85.39 E-value=1.8 Score=26.39 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=43.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.-..+++++.+++.|++++.. ... ..++.+... ++|++++|..-+-.+ ......+.....||.+++.
T Consensus 14 s~la~km~~~a~~~gi~~~i~--a~~-~~e~~~~~~--~~Dvill~PQv~~~~------~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAA--AGA-YGSHYDMIP--DYDLVILAPQMASYY------DELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEE--Eee-HHHHHHhcc--CCCEEEEcChHHHHH------HHHHHHhhhcCCCEEEeCH
Confidence 355677888888899988754 222 233444444 459999987644322 2355667777899988874
No 82
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=85.33 E-value=1.8 Score=26.08 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
....+++.+.+.|++++.. ..+.. ++.+... ++|+|+++..-+... ...+..+...++||.++++.
T Consensus 19 l~~k~~~~~~~~gi~~~v~--a~~~~-~~~~~~~--~~Dvill~pqi~~~~------~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIA--AGSYG-AAGEKLD--DADVVLLAPQVAYML------PDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHHHCCCcEEEE--EecHH-HHHhhcC--CCCEEEECchHHHHH------HHHHHHhhhcCCCEEEeChh
Confidence 4567778888889987743 33322 2333333 469999987643322 23555677788999999864
No 83
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=85.25 E-value=2.8 Score=32.68 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=32.9
Q ss_pred EeeC-ChhhHHHHHHHhcC---CCEEEEeecCCccccceee-ccchhHHhcCCCccEEEE
Q 031202 102 VYWG-DPREKLCDAVEDLK---LDTLVVGSRGLGALKRVLL-GSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 102 v~~g-~~~~~I~~~a~~~~---~dliv~g~~~~~~~~~~~~-gs~~~~v~~~~~~pVliv 156 (164)
.+.| +....|++..+..+ +|.||+++.|-+...-+.| .-..-..+..+++||+.-
T Consensus 171 ~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 171 LVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred cCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEe
Confidence 3456 56777777655433 5999999766442221222 223444566789998863
No 84
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=85.22 E-value=13 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=27.0
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+++|+++|.-+|-.++..+.+. .|.++..+|+....
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g~ 36 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNGL 36 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCCC
Confidence 5899999999997766665542 46689999997653
No 85
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=84.66 E-value=0.92 Score=27.73 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.1
Q ss_pred ChhhHHHHHHHhcCCCEEEEeec
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+-.++|.++++++++|++|+|..
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSH
T ss_pred CCHHHHHHHHHHcCCCEEEECCh
Confidence 44789999999999999999975
No 86
>PRK00919 GMP synthase subunit B; Validated
Probab=84.64 E-value=14 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=29.5
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|+++|.-+|-.++..+.+ ..|.+++.+++....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~---~lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHR---AIGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHH---HhCCeEEEEEEECCC
Confidence 6899999999999877765554 257789999998665
No 87
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=84.59 E-value=9.3 Score=25.46 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=18.9
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
..+.|.+.+++.++|+|++|....
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcc
Confidence 457788888888899999987654
No 88
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=84.29 E-value=1.5 Score=28.52 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=37.5
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCC-cccc---ceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGL-GALK---RVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~-~~~~---~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
..+.|.+.+++.+++.||+|-.-. ++.. .......++.+.++.++||..+-.+..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~T 100 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLS 100 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 478899999999999999994321 2211 112334567777777899998876543
No 89
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=83.91 E-value=17 Score=27.67 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=25.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
++|+|+++|..+|..++..+.+ .+-+++.+++.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 3799999999999776665544 46688999885
No 90
>PRK08349 hypothetical protein; Validated
Probab=83.61 E-value=12 Score=25.73 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=26.4
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
++++.++|..+|-.++-.+.. .+.+++.+|+..
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 689999999999877654433 578999999986
No 91
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=83.23 E-value=16 Score=26.96 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=28.8
Q ss_pred HHhhhcCceEEEEEe----eCChhhHHHHHHHhcCCCEEEEeec
Q 031202 89 TLSRTKGAKVVAKVY----WGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~----~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+.+++.|+++...-. ..+....+.+..++.++|++|+...
T Consensus 135 ~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 135 PLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARY 178 (289)
T ss_pred HHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehh
Confidence 567777888775211 1234567899999999999999765
No 92
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=83.11 E-value=4.5 Score=31.58 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=32.0
Q ss_pred EeeC-ChhhHHHHHHH----hcCCCEEEEeecCCccccceeec-cchhHHhcCCCccEEEE
Q 031202 102 VYWG-DPREKLCDAVE----DLKLDTLVVGSRGLGALKRVLLG-SVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 102 v~~g-~~~~~I~~~a~----~~~~dliv~g~~~~~~~~~~~~g-s~~~~v~~~~~~pVliv 156 (164)
.+.| +....|+...+ ..++|.||+++.|-+...-+.|. -..-.-+..+++||+.-
T Consensus 165 ~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 165 LVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred cccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEe
Confidence 3456 56666666544 33479999997654432222232 23344557788999864
No 93
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=83.05 E-value=22 Score=28.31 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=61.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++|+..+.+.- ++..+..|+..+-++.++-|...+..+. +.+++
T Consensus 361 dviltyg~s~v----V~~ill~A~~~~k~frVvVVDSRP~~EG--------------------------------~~~lr 404 (556)
T KOG1467|consen 361 DVLLTYGSSSV----VNMILLEAKELGKKFRVVVVDSRPNLEG--------------------------------RKLLR 404 (556)
T ss_pred CEEEEecchHH----HHHHHHHHHHhCcceEEEEEeCCCCcch--------------------------------HHHHH
Confidence 46666666654 4444444666677778877776665431 33443
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC--Ccc-ccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG--LGA-LKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~--~~~-~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
.+...|++|...... ++-....+. +-+++|.+. .++ .-.+...+-..-+.++..+|||+|=..-
T Consensus 405 ----~Lv~~GinctYv~I~-----a~syim~ev--tkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~y 471 (556)
T KOG1467|consen 405 ----RLVDRGINCTYVLIN-----AASYIMLEV--TKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAY 471 (556)
T ss_pred ----HHHHcCCCeEEEEeh-----hHHHHHHhc--ceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechh
Confidence 444569999875432 233333343 889999874 122 1111222233445677789999996543
No 94
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=82.56 E-value=16 Score=26.46 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
+...+++|+.+|.-+|-.++..|... .|.++..+.+..+-.+ +
T Consensus 15 k~~~kv~vAfSGGvDSslLa~la~~~---lG~~v~AvTv~sP~~p----------------------------------~ 57 (269)
T COG1606 15 KEKKKVVVAFSGGVDSSLLAKLAKEA---LGDNVVAVTVDSPYIP----------------------------------R 57 (269)
T ss_pred hhcCeEEEEecCCccHHHHHHHHHHH---hccceEEEEEecCCCC----------------------------------h
Confidence 34569999999998887665555443 4577788888775432 1
Q ss_pred hHHHHHHHHhhhcCceEEEE------------------EeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 82 EVLDILDTLSRTKGAKVVAK------------------VYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~------------------v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.-.+.+...+...|++-+.. .....+.+.|.+.+.+.++|.++=|+.
T Consensus 58 ~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtN 122 (269)
T COG1606 58 REIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTN 122 (269)
T ss_pred hhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCc
Confidence 22233333444444433321 111245689999999999999999875
No 95
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=82.54 E-value=17 Score=26.71 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=27.0
Q ss_pred HhhhcCceEEEEEee----CChhhHHHHHHHhcCCCEEEEeec
Q 031202 90 LSRTKGAKVVAKVYW----GDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~----g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+++.|+++...-.. .+....+.+..++.++|++|+...
T Consensus 127 ~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 127 LVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred HHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCc
Confidence 366678887653221 123567888899999999999754
No 96
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=17 Score=28.44 Aligned_cols=100 Identities=18% Similarity=0.106 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
|.-+++.+.++|++. .++||.-..+ .++++-++.+.++
T Consensus 107 STLLLQva~~lA~~~----~vLYVsGEES--------------------------------------~~QiklRA~RL~~ 144 (456)
T COG1066 107 STLLLQVAARLAKRG----KVLYVSGEES--------------------------------------LQQIKLRADRLGL 144 (456)
T ss_pred HHHHHHHHHHHHhcC----cEEEEeCCcC--------------------------------------HHHHHHHHHHhCC
Confidence 677888899988866 6788875542 3344444555565
Q ss_pred eEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCcccc--ceeeccchh---------HHhcCCCccEEEEeC
Q 031202 97 KVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALK--RVLLGSVSN---------HVVTNSSCPVTVVKG 158 (164)
Q Consensus 97 ~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~--~~~~gs~~~---------~v~~~~~~pVliv~~ 158 (164)
..... +..-.-.+.|+..+++.++|++|+-+=+.-... ...-||+++ ++++...+++++|-+
T Consensus 145 ~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 145 PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 43333 334456899999999999999999764321111 122344432 466777789988854
No 97
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=82.08 E-value=3.6 Score=26.60 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCc-c---ccceeeccchhHHhcCC-CccEEEEeCCCC
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLG-A---LKRVLLGSVSNHVVTNS-SCPVTVVKGNPV 161 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~-~---~~~~~~gs~~~~v~~~~-~~pVliv~~~~~ 161 (164)
+...+.|.+.+++.+++.||+|-.-.. + ......-..++.+.... ++||..+-.+..
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 478999999999999999999964222 1 11112334567777776 899999976553
No 98
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=81.95 E-value=25 Score=28.74 Aligned_cols=92 Identities=17% Similarity=0.126 Sum_probs=56.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++|+|.-|.+-+.-.+........+..+++-+. +.++.+.... . .......
T Consensus 70 e~I~I~gDyD~DGitstail~~~L~~~g~~~~~-~~IP~R~~eG-------Y---------------------Gl~~~~i 120 (575)
T PRK11070 70 TRIIVVGDFDADGATSTALSVLALRSLGCSNVD-YLVPNRFEDG-------Y---------------------GLSPEVV 120 (575)
T ss_pred CEEEEEEecCccHHHHHHHHHHHHHHcCCCceE-EEeCCCCcCC-------C---------------------CCCHHHH
Confidence 588888888877766666666666777763222 2334332110 0 1122333
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+.+.+ .+...-..+-.|.-..+-++++++.++|+||+-+|.
T Consensus 121 ~~~~~----~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 121 DQAHA----RGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred HHHHh----cCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 33332 355555446678778888899999999999998773
No 99
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=81.46 E-value=15 Score=27.20 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEeeCC-hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVYWGD-PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
...++.+..+.+.++..+.++..++.+.. -+..+.+.+...++|.||.+.-.-+ ++.++..+...-.-|+-|+
T Consensus 16 ~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT------v~evingl~~~~~~~Lgil 89 (301)
T COG1597 16 GKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT------VNEVANGLAGTDDPPLGIL 89 (301)
T ss_pred cchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch------HHHHHHHHhcCCCCceEEe
Confidence 44677888888889999999998877654 5777777777778999998754322 2334444444433337777
Q ss_pred eCCC
Q 031202 157 KGNP 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|-.+
T Consensus 90 P~GT 93 (301)
T COG1597 90 PGGT 93 (301)
T ss_pred cCCc
Confidence 7544
No 100
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.20 E-value=24 Score=27.62 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCcccc
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALK 134 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~ 134 (164)
...+.+..++...++.+.......+..+.|..+....++|+|++-+.|++.-.
T Consensus 283 aAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 283 GTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcC
Confidence 35556666777777776642222244444444444457899999888776543
No 101
>TIGR00930 2a30 K-Cl cotransporter.
Probab=81.14 E-value=25 Score=30.65 Aligned_cols=95 Identities=19% Similarity=0.075 Sum_probs=62.0
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++||.+........+++++..+.+ .+.-+.+.|+.+.+... .. ++.+...+
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~~-~~gl~i~~~v~~~~~~~-----------------~~-----------~~~~~~~~ 627 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFTK-GKGLMICGSVIQGPRLE-----------------CV-----------KEAQAAEA 627 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhcc-CCcEEEEEEEecCchhh-----------------hH-----------HHHHHHHH
Confidence 689999877778889999999874 33466677887654211 00 01233445
Q ss_pred HHHHHhhhcCceEEEEE-eeCChhhHHHHHHHhc-----CCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKV-YWGDPREKLCDAVEDL-----KLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v-~~g~~~~~I~~~a~~~-----~~dliv~g~~~ 129 (164)
++.++.+..+++--..+ ...++.+++....+.. +++.++||.+.
T Consensus 628 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 628 KIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 56666666677654443 3457888888887764 47889998763
No 102
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=80.99 E-value=5.1 Score=31.26 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHh----cCCCEEEEeecCCccccc-eee-ccchhHHhcCCCccEEE
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVED----LKLDTLVVGSRGLGALKR-VLL-GSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~----~~~dliv~g~~~~~~~~~-~~~-gs~~~~v~~~~~~pVli 155 (164)
++..+++.+....+-+-...+.| +...+|++.++. ..+|.||+|..|-+ +++ +.| --..-.-+..|+.||+-
T Consensus 152 Il~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS-iEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 152 ILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS-IEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch-HHHHhccChHHHHHHHHhCCCCeEe
Confidence 44444444433333333333455 666777666443 34999999966543 443 222 22444566788899875
Q ss_pred E
Q 031202 156 V 156 (164)
Q Consensus 156 v 156 (164)
-
T Consensus 231 A 231 (440)
T COG1570 231 A 231 (440)
T ss_pred e
Confidence 3
No 103
>PRK11914 diacylglycerol kinase; Reviewed
Probab=80.60 E-value=12 Score=27.68 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+..+++.+.+++.+.++....... .-...+.+.+.+.++|+||+..-. +.+. .++..+. ..+.|+-++|-.
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGD-GTi~-----evv~~l~-~~~~~lgiiP~G 97 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGD-GVIS-----NALQVLA-GTDIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCc-hHHH-----HHhHHhc-cCCCcEEEEeCC
Confidence 3445556667777788777544332 336666766667778877765332 2222 2333333 457899999865
Q ss_pred C
Q 031202 160 P 160 (164)
Q Consensus 160 ~ 160 (164)
+
T Consensus 98 T 98 (306)
T PRK11914 98 T 98 (306)
T ss_pred C
Confidence 4
No 104
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=80.57 E-value=23 Score=27.06 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=25.2
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
.++|+|+++|.-+|..++..+ +..+.++..+++.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL----~~~G~eV~av~~~ 38 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLML----QEQGYEIVGVTMR 38 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHH----HHcCCcEEEEEec
Confidence 369999999998887655533 2356778888884
No 105
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.41 E-value=10 Score=23.48 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+..+...++..|.++.. ....-+.+++++.+.+.++|+|++...
T Consensus 16 ~~~~~~~l~~~G~~V~~-lg~~~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 16 KNIVARALRDAGFEVID-LGVDVPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 34666777888988743 223467889999999999999999865
No 106
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=80.20 E-value=3.9 Score=24.64 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
..+.+++.+.+.|++++.. ..+..+ +.... .++|+|+++..-+.... ..+..+...++||.++++.
T Consensus 15 ~~~ki~~~~~~~~~~~~v~--~~~~~~-~~~~~--~~~Diil~~Pqv~~~~~------~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIE--AVPESE-LEEYI--DDADVVLLGPQVRYMLD------EVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHHHCCCceEEE--EecHHH-HHHhc--CCCCEEEEChhHHHHHH------HHHHHhccCCCcEEEcChH
Confidence 4557788888889987643 333322 32333 45699999866433222 2333445678999999864
No 107
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=80.16 E-value=23 Score=26.63 Aligned_cols=102 Identities=24% Similarity=0.241 Sum_probs=56.8
Q ss_pred EEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHH
Q 031202 7 VGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDI 86 (164)
Q Consensus 7 ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
+.|=+-+++. ..+..|+.++...+..+.=+.+-.|..... ....|........+ ..++++.
T Consensus 69 ~~vQl~gsdp--~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~----~~g~Ga~Ll~~p~l-------------v~~iv~a 129 (323)
T COG0042 69 VAVQLGGSDP--ELLAEAAKIAEELGADIIDLNCGCPSPKVV----KGGAGAALLKNPEL-------------LAEIVKA 129 (323)
T ss_pred EEEEecCCCH--HHHHHHHHHHHhcCCCEEeeeCCCChHHhc----CCCcchhhcCCHHH-------------HHHHHHH
Confidence 3444445544 456667777777776555555554443221 11122222221111 2234444
Q ss_pred HHHHhhhcCceEEEEEeeC-Ch----hhHHHHHHHhcCCCEEEEeecC
Q 031202 87 LDTLSRTKGAKVVAKVYWG-DP----REKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g-~~----~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+.+... .+.++++++-| +- ...+.+.+++.+++.+.+-.+.
T Consensus 130 ~~~av~--~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRt 175 (323)
T COG0042 130 MVEAVG--DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRT 175 (323)
T ss_pred HHHhhC--CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEeccc
Confidence 443333 47788777776 22 4579999999999999996553
No 108
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=80.08 E-value=11 Score=27.43 Aligned_cols=87 Identities=23% Similarity=0.222 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhh
Q 031202 14 SPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRT 93 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (164)
|-.+..-+..++...+..|+++.---...++...++ .+| ..++.+..+.+...+
T Consensus 54 svEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYs-----FQG---------------------lge~gL~~l~~a~~~ 107 (286)
T COG2876 54 SVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYS-----FQG---------------------LGEEGLKLLKRAADE 107 (286)
T ss_pred ccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccc-----ccc---------------------cCHHHHHHHHHHHHH
Confidence 434455555566666778888777777777654331 122 124778888888899
Q ss_pred cCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 94 KGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 94 ~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
.|+.+.+++..-.-.+.+.++ +|+|=+|.++..
T Consensus 108 ~Gl~vvtEvm~~~~~e~~~~y-----~DilqvGARNMQ 140 (286)
T COG2876 108 TGLPVVTEVMDVRDVEAAAEY-----ADILQVGARNMQ 140 (286)
T ss_pred cCCeeEEEecCHHHHHHHHhh-----hhHHHhcccchh
Confidence 999999988765545555544 366777766544
No 109
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=79.98 E-value=10 Score=29.25 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..-++|||++.++-.+.++++.+-. ....|+++.++--....
T Consensus 2 l~~k~ill~v~gsiaayk~~~l~r~-L~~~ga~v~vvmt~~a~ 43 (392)
T COG0452 2 LEGKRILLGVTGSIAAYKSVELVRL-LRRSGAEVRVVMTESAR 43 (392)
T ss_pred CCCceEEEEecCchhhhhHHHHHHH-HhhCCCeeEEEcchhhh
Confidence 3457999999999999888776544 46688888877554443
No 110
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=79.82 E-value=11 Score=22.81 Aligned_cols=50 Identities=30% Similarity=0.425 Sum_probs=38.3
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEee-----------C-ChhhHHHHHHHhcCCCEEEEeec
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYW-----------G-DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~-----------g-~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..++.++++...+...|.++...+.. | .-.++|.+.++..++|++|.-..
T Consensus 5 ~~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 5 DFEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC
Confidence 34677888888888888876654322 2 34799999999999999999754
No 111
>PRK05920 aromatic acid decarboxylase; Validated
Probab=79.77 E-value=5.9 Score=27.61 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=28.0
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+.++|++++.|+-.+.++++..-.|.+ .|.+++++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 458999999999999888887777755 477766554
No 112
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=79.75 E-value=4 Score=23.55 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=22.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILI 38 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll 38 (164)
.++|.+++|.+...+.+..+........+.+++.+
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~v 80 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTRV 80 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG---------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccccC
Confidence 47899999999999999998888666666666543
No 113
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=79.67 E-value=14 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=24.3
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
+++|+++|..+|-.++..+.+. .+.++..+++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~---~~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK---YGLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH---hCCceEEEEeCC
Confidence 6899999999998877766543 223667777754
No 114
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=78.95 E-value=8.3 Score=29.16 Aligned_cols=69 Identities=28% Similarity=0.451 Sum_probs=47.4
Q ss_pred HHHHHhhhcCceEEEEEeeCC---------hhhHHHHHHHhcCCCEEEEeec-CCccccceeeccchhHHhcCCCccEEE
Q 031202 86 ILDTLSRTKGAKVVAKVYWGD---------PREKLCDAVEDLKLDTLVVGSR-GLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~---------~~~~I~~~a~~~~~dliv~g~~-~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
.+...+.+ +.++...+..|| +.+.|+..+++.++|++|.|.- +.++. +..-|.++..|-++..+|++.
T Consensus 39 ~l~~~l~~-~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrY-G~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 39 MLEKALKD-DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRY-GVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHhcC-CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchH-HHHHHHHHHHHHHhhCCCEEE
Confidence 34444443 455555555552 4588999999999999999954 33333 234577888899999999986
Q ss_pred E
Q 031202 156 V 156 (164)
Q Consensus 156 v 156 (164)
-
T Consensus 117 a 117 (349)
T PF07355_consen 117 A 117 (349)
T ss_pred E
Confidence 4
No 115
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=77.80 E-value=23 Score=26.70 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=29.1
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
.|.......+....+ +|+||+.+... ...+.+.+++++||+
T Consensus 86 kgEsl~DTarvls~y-~D~iviR~~~~---------~~~~~~a~~s~vPVI 126 (332)
T PRK04284 86 KKESTKDTARVLGGM-YDGIEYRGFSQ---------RTVETLAEYSGVPVW 126 (332)
T ss_pred CCcCHHHHHHHHHHh-CCEEEEecCch---------HHHHHHHHhCCCCEE
Confidence 355566666777777 89999975432 246777888899987
No 116
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=77.77 E-value=28 Score=26.39 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=24.6
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+|+|+++|.-+|-.++..+.+ .+.+++.+++...
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~~ 34 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKNW 34 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEecc
Confidence 589999999988766554433 4667888887643
No 117
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=77.75 E-value=2.9 Score=29.81 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=38.7
Q ss_pred HhhhcCceEEEEEeeC---Chh---hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 90 LSRTKGAKVVAKVYWG---DPR---EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~g---~~~---~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
++.+.++.+.+ +..| ++. +...+..++.++|++|+.+.+..- .....+..++...++|.+|+.+.+
T Consensus 25 rAdRedI~vrv-~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN~~~----PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 25 RADREDIDVRV-VGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPNAAA----PGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp TS--SSEEEEE-EEEET--SHHHHHHHHHHHHHHH--SEEEEE-S-TTS----HHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred hhccCCceEEE-eccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCC----CCcHHHHHHHHhCCCCEEEEcCCC
Confidence 34444555554 3344 333 445555678999999998765432 124568899999999999998755
No 118
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=77.53 E-value=22 Score=25.06 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=37.3
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+.-.++.++.+...|+.+...-+...+.+.|.....+. |.|.+|.-
T Consensus 48 ~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~--d~IyVgGG 93 (224)
T COG3340 48 DFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKA--DIIYVGGG 93 (224)
T ss_pred HHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhc--cEEEECCc
Confidence 55677888888888999888777778888888888887 88888754
No 119
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=77.37 E-value=11 Score=21.52 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILI 38 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll 38 (164)
.++|.+++|.++..+.+...........+..+.++
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999888877777776667665543
No 120
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=77.33 E-value=9.2 Score=21.46 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=36.2
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
|+.||+|.+.=........|++-|+.-|...=..|..+.|.+...
T Consensus 3 ~hvYK~IelvGtSp~S~d~Ai~~Ai~RA~~t~~~l~wfeV~~~rg 47 (71)
T COG3360 3 HHVYKKIELVGTSPTSIDAAIANAIARAADTLDNLDWFEVVETRG 47 (71)
T ss_pred cceEEEEEEEecCCccHHHHHHHHHHHHHhhhhcceEEEEEeecc
Confidence 356788887777667778899999998888888899999988654
No 121
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=77.25 E-value=29 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=23.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
.++|+++|..+|-.++..+. +..+.++.++++..
T Consensus 61 D~iV~lSGGkDSs~la~ll~---~~~gl~~l~vt~~~ 94 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLK---KKLGLNPLLVTVDP 94 (343)
T ss_pred CEEEECCCCHHHHHHHHHHH---HHhCCceEEEEECC
Confidence 59999999999977665443 33466666677754
No 122
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=77.17 E-value=6.5 Score=24.97 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=24.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILI 38 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll 38 (164)
+||++++.|+.....+.++...|.+. |.+++++
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv 33 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVV 33 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEE
Confidence 58999999999998888887777655 7775554
No 123
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.00 E-value=28 Score=27.11 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChh---hHHHHHHHhcCCCEEEEeecCCccc
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPR---EKLCDAVEDLKLDTLVVGSRGLGAL 133 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~---~~I~~~a~~~~~dliv~g~~~~~~~ 133 (164)
.+.+++...+...++++-....+-+|+ .+=++..+..++|+|++-+.++-..
T Consensus 143 gAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~q 197 (483)
T KOG0780|consen 143 GAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQ 197 (483)
T ss_pred chHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhh
Confidence 455566655666666665544444443 2333445556677777766555433
No 124
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=76.45 E-value=28 Score=26.36 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=28.9
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
.|+......+....+ +|.||+.+... .....+.+++.+||+=
T Consensus 86 kgEsl~Dtarvls~y-~D~iviR~~~~---------~~~~~~a~~~~vPVIN 127 (334)
T PRK12562 86 HKESIKDTARVLGRM-YDGIQYRGHGQ---------EVVETLAEYAGVPVWN 127 (334)
T ss_pred CCcCHHHHHHHHHHh-CCEEEEECCch---------HHHHHHHHhCCCCEEE
Confidence 355556666666666 89999975432 2467788888999863
No 125
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=76.16 E-value=23 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=22.6
Q ss_pred CChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 13 NSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 13 ~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
.++.+..++..+..+++..+..++++.+..
T Consensus 33 i~e~~~~~l~ea~~la~~~g~~v~av~~G~ 62 (202)
T cd01714 33 INPYDEYAVEEALRLKEKYGGEVTVVSMGP 62 (202)
T ss_pred CChHhHHHHHHHHHhhhhcCCEEEEEEECC
Confidence 456677888889998887777877777654
No 126
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=75.82 E-value=4.4 Score=26.01 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=37.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCC-cccc---ceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGL-GALK---RVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~-~~~~---~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
...+.|.+.+++.+++.||+|-.-. .+.. ....-..++.+-...+.||..+-.+..
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~T 94 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERLS 94 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 4578899999999999999994321 1111 112224566777777899999876543
No 127
>PRK00509 argininosuccinate synthase; Provisional
Probab=74.95 E-value=37 Score=26.38 Aligned_cols=38 Identities=11% Similarity=0.279 Sum_probs=29.8
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+.+++|+++|.-+|..++.++.+. .+.+++.+++....
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~Gq 39 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVGQ 39 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecCC
Confidence 469999999999988777776552 47789999997653
No 128
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=74.89 E-value=15 Score=25.40 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=44.6
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC---ccEEEE
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS---CPVTVV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~---~pVliv 156 (164)
...+...++..|.++.. ...+-+.+.+++.+++.++|+|.+.......... +....+.+=...+ ++|++-
T Consensus 99 ~~~v~~~l~~~G~~vi~-lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 99 KNLVATMLEANGFEVID-LGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEE
Confidence 44566677788888742 3344689999999999999999998643333222 3344454444433 455553
No 129
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.75 E-value=30 Score=25.21 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhc
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTK 94 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
++...++++|..+.. .+.++...+...++....++ +....+-+..+++.+++.
T Consensus 38 e~~~~~~~~A~~lk~-~g~~~~r~~~~kpRTs~~s~--------------------------~G~g~~gl~~l~~~~~~~ 90 (266)
T PRK13398 38 ESEEQMVKVAEKLKE-LGVHMLRGGAFKPRTSPYSF--------------------------QGLGEEGLKILKEVGDKY 90 (266)
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEEeeecCCCCCCcc--------------------------CCcHHHHHHHHHHHHHHc
Confidence 455678888888866 67888888888866542210 011256677888888999
Q ss_pred CceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 95 GAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
|+.+-+.+..-.-.+.+. +. +|++-||++.-.
T Consensus 91 Gl~~~te~~d~~~~~~l~----~~-vd~~kIga~~~~ 122 (266)
T PRK13398 91 NLPVVTEVMDTRDVEEVA----DY-ADMLQIGSRNMQ 122 (266)
T ss_pred CCCEEEeeCChhhHHHHH----Hh-CCEEEECccccc
Confidence 999988776655444443 33 588888876543
No 130
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=74.74 E-value=19 Score=29.44 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=49.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC----ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG----DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g----~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+.+.+.+...|++++..|..- +....+.+.+++.+++.||.+.-... ..+.-+.-.+.+||+=||
T Consensus 424 ~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~--------~l~~~~a~~t~~pvi~vp 495 (577)
T PLN02948 424 PTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAA--------HLPGMVASMTPLPVIGVP 495 (577)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccc--------cchHHHhhccCCCEEEcC
Confidence 355666777778899999887653 23355566677788887777655433 335557778899999998
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 496 ~~~ 498 (577)
T PLN02948 496 VKT 498 (577)
T ss_pred CCC
Confidence 753
No 131
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=73.88 E-value=13 Score=25.86 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhc---CCCEEEEeec
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDL---KLDTLVVGSR 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~---~~dliv~g~~ 128 (164)
.+..+.+++.++..|+.=..++..|+..+.+-+...+. .+|+|++-..
T Consensus 80 ~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 80 PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 34556666677777764334467899888888887765 5899999765
No 132
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=73.77 E-value=28 Score=24.35 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHhhhcCceEEEEEeeC-----ChhhHHHHHHHhcCCCEEEEeec
Q 031202 89 TLSRTKGAKVVAKVYWG-----DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~~g-----~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+++.+.|+++...-... ...+++.+..++.++|++|+...
T Consensus 43 ~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 43 EYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGY 87 (207)
T ss_pred HHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCc
Confidence 35666688775421111 12467888899999999999654
No 133
>PHA02031 putative DnaG-like primase
Probab=73.58 E-value=9.4 Score=27.73 Aligned_cols=37 Identities=16% Similarity=-0.085 Sum_probs=31.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
++|+++.|++...+.|...|++++...+..+.++.+-
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~lP 243 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIITP 243 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEECC
Confidence 7899999999999999999999988888776666553
No 134
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=73.51 E-value=17 Score=29.41 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHH---HHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDA---VEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~---a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.+.+++.+.+++......+..+...+++... ....++|+||=. |+++..+=++.++||+.++
T Consensus 23 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~ 90 (538)
T PRK15424 23 SRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNGAYLKSRLSVPVILIK 90 (538)
T ss_pred HHHHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHHHHHHhhCCCCEEEec
Confidence 3467778888888887777666666655555544 345578887742 5677778888899999987
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
-.
T Consensus 91 ~s 92 (538)
T PRK15424 91 PS 92 (538)
T ss_pred CC
Confidence 43
No 135
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=73.49 E-value=6.6 Score=27.41 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
..+.+.+.+.+.|.|.+|.+. +....-+..+...+=++.++||++.|....
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 335566778888999998552 111111233445444447899999886543
No 136
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=73.31 E-value=33 Score=24.97 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=33.8
Q ss_pred HhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC---CccccceeeccchhHHhcCCCccEEEEeC
Q 031202 90 LSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG---LGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~---~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+.|+++... . ..++....+. ++|.+++|... .+..-.........-++++.++||+++-+
T Consensus 153 ~L~~~gi~v~~i--~---d~~~~~~m~~-~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 153 ELAEAGIPVTLI--P---DSAVGYVMPR-DVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAE 218 (282)
T ss_dssp HHHHTT-EEEEE------GGGHHHHHHC-TESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--
T ss_pred HhhhcceeEEEE--e---chHHHHHHHH-hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcc
Confidence 344568887753 2 2345555666 67999999864 22222222222344567788899999843
No 137
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.15 E-value=43 Score=26.25 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL 133 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~ 133 (164)
..+.+..+++..++.+.......+....|.+ ..++|+|++-..|++..
T Consensus 266 a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~ 313 (424)
T PRK05703 266 AVEQLKTYAKIMGIPVEVVYDPKELAKALEQ---LRDCDVILIDTAGRSQR 313 (424)
T ss_pred HHHHHHHHHHHhCCceEccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCC
Confidence 3456666666677776542222233333332 23579999987776654
No 138
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=73.13 E-value=15 Score=23.79 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
...+...++..|.++.. ....-+.+++.+.+.+.++|+|.+....
T Consensus 20 ~~iv~~~lr~~G~eVi~-LG~~vp~e~i~~~a~~~~~d~V~lS~~~ 64 (137)
T PRK02261 20 NKILDRALTEAGFEVIN-LGVMTSQEEFIDAAIETDADAILVSSLY 64 (137)
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcCcc
Confidence 34555677778888775 3345789999999999999999997643
No 139
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.94 E-value=39 Score=25.62 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=41.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHH---HHHHHhcCCCEEEEeecCCccccceee
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKL---CDAVEDLKLDTLVVGSRGLGALKRVLL 138 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I---~~~a~~~~~dliv~g~~~~~~~~~~~~ 138 (164)
..+.+++..+.++.|+++-..- .| ||+..+ +++|+..++|++++-+-||-.-...++
T Consensus 180 AaAiEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM 240 (340)
T COG0552 180 AAAIEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLM 240 (340)
T ss_pred HHHHHHHHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHH
Confidence 5778889999999999887643 45 776544 456888999999998877655443343
No 140
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=72.91 E-value=16 Score=26.64 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 81 PEVLDILDTLSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+-++.+.+..++.++++.-. +-+.+-.+.|..+.+++++|++|+..+.
T Consensus 114 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 114 PEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 355667777778888888766 4566889999999999999999997554
No 141
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=72.82 E-value=29 Score=24.21 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=44.5
Q ss_pred cCceEEEEEeeCC------------hhhHHHHHHHhcCC-CEEEEeecCCccccce-eeccchhHHhcCCCccEEEEeCC
Q 031202 94 KGAKVVAKVYWGD------------PREKLCDAVEDLKL-DTLVVGSRGLGALKRV-LLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 94 ~~~~~~~~v~~g~------------~~~~I~~~a~~~~~-dliv~g~~~~~~~~~~-~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+++++.....++ ..+.|++..+..+. |.|++...--....+. +=+-+.+.+.+..++||.+++.+
T Consensus 123 ~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~~~lg~~v~vv~~~ 202 (204)
T PF04459_consen 123 PGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEELEERLGVPVIVVRGP 202 (204)
T ss_pred CCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHHHHHhCCcEEEeCCC
Confidence 3777776544433 35777777765444 8999976433322233 33778999999999999999865
Q ss_pred C
Q 031202 160 P 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 203 ~ 203 (204)
T PF04459_consen 203 G 203 (204)
T ss_pred C
Confidence 3
No 142
>PRK08185 hypothetical protein; Provisional
Probab=72.76 E-value=12 Score=27.56 Aligned_cols=66 Identities=9% Similarity=-0.077 Sum_probs=46.6
Q ss_pred hhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 91 SRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 91 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
+.+.+.-+-.- +..-+...++++.|++.+.-+|+..+.+........+......+++++++||.+-
T Consensus 8 A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lH 74 (283)
T PRK08185 8 AKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIH 74 (283)
T ss_pred HHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 34444444333 3344889999999999999999988775543322336677888999999998774
No 143
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=72.46 E-value=42 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=27.3
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
-+++|+.++|.-+|..|+-. ....|.++..+|+...
T Consensus 180 ~gkvlvllSGGiDSpVAa~l----l~krG~~V~~v~f~~g 215 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFL----MMKRGVEVIPVHIYMG 215 (381)
T ss_pred CCcEEEEEeCChHHHHHHHH----HHHcCCeEEEEEEEeC
Confidence 46899999999999764443 3346999999999633
No 144
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=71.95 E-value=29 Score=25.85 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-C--h--hhHHHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEE
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-D--P--REKLCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~--~--~~~I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVli 155 (164)
+.+.+....+..++++.++++.| + . ..++++...+.+++.|.+..+.+.. ..+..-=.....+....++||+.
T Consensus 110 ~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~ 188 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIA 188 (309)
T ss_dssp HHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEE
T ss_pred hhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEE
Confidence 33344444444567888777766 2 2 4678888999999999997653321 11111122355677778888875
No 145
>PRK13059 putative lipid kinase; Reviewed
Probab=71.88 E-value=31 Score=25.34 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~~~ 159 (164)
+..+.+.+.+.+.+.++...... +.-. +....+...++|.||+..-. +. +..++..++.. .++|+-++|-.
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGD-GT-----v~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGD-GT-----VDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCc-cH-----HHHHHHHHHhcCCCCcEEEECCC
Confidence 34456667777778776643222 2222 33344445567877664322 21 23345556543 46899999854
Q ss_pred C
Q 031202 160 P 160 (164)
Q Consensus 160 ~ 160 (164)
+
T Consensus 92 T 92 (295)
T PRK13059 92 T 92 (295)
T ss_pred C
Confidence 4
No 146
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=71.78 E-value=41 Score=25.48 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|+......+....+ +|+||+...... ..+.+.+++.+||+=
T Consensus 84 gEsl~Dtarvls~y-~D~iviR~~~~~---------~~~~~a~~~~vPVIN 124 (338)
T PRK02255 84 HESLEDTARVLSRL-VDIIMARVDRHQ---------TVVELAKYATVPVIN 124 (338)
T ss_pred CcCHHHHHHHHHHh-CcEEEEecCChH---------HHHHHHHhCCCCEEE
Confidence 54555555666666 899999754322 356678888899763
No 147
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=71.58 E-value=5.1 Score=30.68 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=7.4
Q ss_pred hHHHHHHHhcCCCEEEEe
Q 031202 109 EKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g 126 (164)
+.+++.|++.++|+||++
T Consensus 30 ~~~l~~a~~~~vD~vliA 47 (390)
T COG0420 30 DELLEIAKEEKVDFVLIA 47 (390)
T ss_pred HHHHHHHHHccCCEEEEc
Confidence 333444444444444443
No 148
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=71.37 E-value=5.7 Score=29.61 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=35.5
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC-CccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG-LGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~-~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+..+.++.+++. |+||+|..+ .+++...+.-.-....+.++++|++.|.+-
T Consensus 163 ~~~~~~l~AI~~A--DlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni 215 (309)
T cd07044 163 SPSREVLEAIEKA--DNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNI 215 (309)
T ss_pred CCCHHHHHHHHhC--CEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCC
Confidence 4567888888888 999999543 444443344444555666789999888653
No 149
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=71.31 E-value=28 Score=28.09 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHH---HHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDA---VEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~---a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+.+.+.+.+.+-.++..+..|+..+++... ....++|+||=. |.++..+=++.++||+-++-
T Consensus 14 ~l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~ 81 (526)
T TIGR02329 14 RLFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLSLPVIVIKP 81 (526)
T ss_pred HHHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCCCCEEEecC
Confidence 455666666666654445557778877666644 446678887742 45677777788899998874
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 82 s 82 (526)
T TIGR02329 82 T 82 (526)
T ss_pred C
Confidence 3
No 150
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.14 E-value=18 Score=22.72 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
...+...++..|.++.. .....+.+++++.+.+.++|.|++....
T Consensus 16 ~~~~~~~l~~~G~~vi~-lG~~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 16 AKVIARALRDAGFEVIY-TGLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcccc
Confidence 44556677788888775 2233788999999999999999998654
No 151
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=71.11 E-value=31 Score=25.27 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=33.4
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCCC
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGNP 160 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~~ 160 (164)
-+..+++++.++|-+++..........--+-.--..|+..+ +.||+++..+.
T Consensus 86 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 86 QELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 44457789999999998765433221111122345577888 79999997654
No 152
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=70.86 E-value=30 Score=25.38 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=44.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+..+.+.+.+. ..+.+-..+...+.. -+..+.+++.++|-+++..........--+-.--..|+..++.||+++.-+
T Consensus 58 ~~~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 58 ELIRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred HHHHHHHHHhC-CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 34444444432 234444444443443 445577899999999997654332211111233456778889999999654
Q ss_pred C
Q 031202 160 P 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 137 ~ 137 (292)
T PRK03170 137 G 137 (292)
T ss_pred c
Confidence 3
No 153
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=70.79 E-value=24 Score=25.67 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=34.5
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
.-+..+.+++.++|.+++.........+--+-.--..|+..++.||+++..+.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~ 136 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPG 136 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChh
Confidence 34555779999999888876543322111112345667888899999997543
No 154
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=70.79 E-value=8 Score=27.50 Aligned_cols=53 Identities=15% Similarity=0.349 Sum_probs=38.3
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+..++|.+.+.+.+.|.|.+|.+.--..+ -.-.+.+.+-.+.+.||++.|...
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~--~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEE--NVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHH--HHHHHHHHHHhhcCCCEEEecCCh
Confidence 56778999999999999999965322111 123456666668899999998754
No 155
>PRK00211 sulfur relay protein TusC; Validated
Probab=70.58 E-value=18 Score=22.83 Aligned_cols=40 Identities=8% Similarity=0.065 Sum_probs=27.2
Q ss_pred CcEEEEEecCChh----hHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPN----SKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~----s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
|++|++.+..+++ ++.+++.|+..+.. +-++.++...+.-
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~-~~~v~vff~~DgV 44 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAF-TEDIGVFFIDDGV 44 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcc-cCCeeEEEEhhhH
Confidence 3679999986544 56777776665554 3488888876554
No 156
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=70.58 E-value=17 Score=26.67 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 81 PEVLDILDTLSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+-++...+..++.++++... +-+.+-.+.|.+..+++++|++|+..+.
T Consensus 115 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 115 EEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 356677777888889988876 4456888999999999999999996543
No 157
>PRK13054 lipid kinase; Reviewed
Probab=70.51 E-value=40 Score=24.81 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=40.4
Q ss_pred HHHHHHHhhhcCceEEEEEee--CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW--GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+.+.+.+.+++..... ++ ..++.+.+...++|.||+..-. +.+ ..++..++.. .++|+-++|-
T Consensus 20 ~~~~~~~l~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv~GGD-GTl-----~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 20 LREAVGLLREEGHTLHVRVTWEKGD-AARYVEEALALGVATVIAGGGD-GTI-----NEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCc-HHHHHHHHHHcCCCEEEEECCc-cHH-----HHHHHHHHhhccCCCCcEEEEeC
Confidence 334445567778877754433 34 5666666656667877765332 222 2344555543 3578999986
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
.+
T Consensus 93 GT 94 (300)
T PRK13054 93 GT 94 (300)
T ss_pred Cc
Confidence 54
No 158
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=70.24 E-value=25 Score=25.80 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=38.4
Q ss_pred ceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..++ ..+++++.++|-+++..........--+-.--..|+..++.||+++.-+
T Consensus 74 ~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 74 VKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred CCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 444433333344444 4577899999999998654332211111123455778889999999754
No 159
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=69.89 E-value=17 Score=25.70 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=31.2
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
.++|.++.|++...+.|...+..+....+-.+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4689999999999999999999998877877666543
No 160
>PRK04527 argininosuccinate synthase; Provisional
Probab=69.75 E-value=51 Score=25.69 Aligned_cols=36 Identities=3% Similarity=0.190 Sum_probs=28.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.++++|+++|.-+|..++.++.+ .+.+++.+++...
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~g 37 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTG 37 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeC
Confidence 36899999999888887777655 3678888888655
No 161
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=69.67 E-value=22 Score=22.78 Aligned_cols=42 Identities=31% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+...++.+|.++-. .-..-+.+++++.+.++++|+|.+.+-
T Consensus 18 iv~~~L~~~GfeVid-LG~~v~~e~~v~aa~~~~adiVglS~L 59 (128)
T cd02072 18 ILDHAFTEAGFNVVN-LGVLSPQEEFIDAAIETDADAILVSSL 59 (128)
T ss_pred HHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 344456667887654 333467899999999999999999764
No 162
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=69.64 E-value=28 Score=22.72 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=29.6
Q ss_pred CceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC
Q 031202 95 GAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
.+++--++.-|.+.+.=.+...+.++|++++|....
T Consensus 62 s~ryVD~vi~~~p~~~~~~~i~~~k~Div~lG~D~~ 97 (140)
T COG0615 62 SLRYVDEVILGAPWDIKFEDIEEYKPDIVVLGDDQK 97 (140)
T ss_pred cCcchheeeeCCccccChHHHHHhCCCEEEECCCCc
Confidence 556666688888887778999999999999997765
No 163
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=68.98 E-value=29 Score=25.16 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=46.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHH---HHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDA---VEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~---a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
+.-...+.+.+...|+.+......||-.+.|.+. +.+. +|+||.. -|-++..+ .-+.+.+++....|+.+
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~t-GGLGPT~D---DiT~e~vAka~g~~lv~ 92 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITT-GGLGPTHD---DLTAEAVAKALGRPLVL 92 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEEC-CCcCCCcc---HhHHHHHHHHhCCCccc
Confidence 4456678888889999999888888766666554 4455 8999984 33333322 12566666666666554
No 164
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=68.97 E-value=45 Score=24.81 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=29.5
Q ss_pred eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 103 YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 103 ~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
..|+......+....+ +|+||+.+.... ..+.+.+++++||+=
T Consensus 78 ~kgEsl~Dt~~vls~y-~D~iviR~~~~~---------~~~~~a~~~~vPVIN 120 (302)
T PRK14805 78 GKRESVADFAANLSCW-ADAIVARVFSHS---------TIEQLAEHGSVPVIN 120 (302)
T ss_pred CCCcCHHHHHHHHHHh-CCEEEEeCCChh---------HHHHHHHhCCCCEEE
Confidence 3455566666666666 899999765332 466678888899863
No 165
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=68.75 E-value=47 Score=24.89 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=27.7
Q ss_pred eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCc-cEE
Q 031202 103 YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSC-PVT 154 (164)
Q Consensus 103 ~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~-pVl 154 (164)
..|...-..++....+++|++||.++..+ .+..+...+.| ||+
T Consensus 86 ~KGEtL~DT~~tl~ayg~D~iViRH~~eg---------aa~~~a~~~~~~pvI 129 (316)
T COG0540 86 KKGETLADTIRTLSAYGVDAIVIRHPEEG---------AARLLAEFSGVNPVI 129 (316)
T ss_pred cccccHHHHHHHHHhhCCCEEEEeCcccc---------HHHHHHHhcCCCceE
Confidence 34555555666777788999999765332 24456666677 643
No 166
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.58 E-value=24 Score=22.83 Aligned_cols=71 Identities=21% Similarity=0.131 Sum_probs=42.8
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeC
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKG 158 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~ 158 (164)
..+...++..|.++-. .-..-+.+.+++.+.++++|+|.+.+--..... .+..+.+.+-.+. ..+++++-.
T Consensus 19 ~iv~~~l~~~GfeVi~-LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~--~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 19 KILDHAFTNAGFNVVN-LGVLSPQEEFIKAAIETKADAILVSSLYGHGEI--DCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecccccCHH--HHHHHHHHHHHCCCCCCEEEecC
Confidence 3445566777887764 233467899999999999999999765322221 2334444443332 234455543
No 167
>PRK14561 hypothetical protein; Provisional
Probab=68.25 E-value=36 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=21.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
+|+|.++|..+|-.++..+.++ .++.++++..
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~ 33 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNF 33 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEec
Confidence 5999999999987766554332 3456666653
No 168
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=67.65 E-value=42 Score=23.92 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=28.3
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|.++|.-+|-.++.+|.+ .+.+++.+++....
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~----~~~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ----QYDEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh----cCCeEEEEEEEeCC
Confidence 6899999999999888877744 24578899988764
No 169
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=67.56 E-value=32 Score=24.36 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHh--cCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVV--TNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~--~~~~~pVliv~ 157 (164)
...+.+.+...+...|..+.+ +..| ++..+.++.. +|+|++-.. -....++ .....+= .....||+++-
T Consensus 9 d~~i~~~l~~~L~~~g~~v~~-~~~~---~~a~~~~~~~-~dlviLD~~-lP~~dG~---~~~~~iR~~~~~~~PIi~Lt 79 (229)
T COG0745 9 DPELAELLKEYLEEEGYEVDV-AADG---EEALEAAREQ-PDLVLLDLM-LPDLDGL---ELCRRLRAKKGSGPPIIVLT 79 (229)
T ss_pred CHHHHHHHHHHHHHCCCEEEE-ECCH---HHHHHHHhcC-CCEEEEECC-CCCCCHH---HHHHHHHhhcCCCCcEEEEE
Confidence 456778888888999998886 2233 5566666666 899999754 2222221 1222222 34668899886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 80 a~ 81 (229)
T COG0745 80 AR 81 (229)
T ss_pred CC
Confidence 54
No 170
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=67.24 E-value=22 Score=28.15 Aligned_cols=48 Identities=23% Similarity=0.154 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+.+..+.+.++..|.+.... ..|++.+.|.+.+++.+++-|.....
T Consensus 49 l~~sL~~L~~~L~~~G~~L~v~-~~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 49 LKQSLAHLDQSLRSLGTCLVTI-RSTDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHHHHHHHcCCceEEE-eCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 4566777777777778777742 25789999999999999998887654
No 171
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=67.23 E-value=22 Score=25.18 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.++++...+.+.++...| .|.+..+-+..+.+.++|.+|+|+.
T Consensus 159 ~~l~~~~~~~~~~~~IeV-DGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 159 RAIRKKIDALGKPIRLEI-DGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEChh
Confidence 344444445566655433 5666777777888889999999964
No 172
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=67.20 E-value=23 Score=25.11 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCceEEEEEee-----CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW-----GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~-----g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
+...+.+.++..|.+|...-.. ++..+.|.+..++++++-|.+-..+.-.+. ...+.+.....+|+-+++
T Consensus 50 aMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~-----~~l~~~~~~~~i~~~~~~ 124 (224)
T PF04244_consen 50 AMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLE-----QRLESLAQQLGIPLEVLE 124 (224)
T ss_dssp HHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHH-----HHHHH----SSS-EEEE-
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHH-----HHHHhhhcccCCceEEeC
Confidence 4455666667779999875433 367899999999999999999876544333 345567778889999988
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
.+.
T Consensus 125 ~~~ 127 (224)
T PF04244_consen 125 DPH 127 (224)
T ss_dssp -TT
T ss_pred CCC
Confidence 764
No 173
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=67.17 E-value=22 Score=21.80 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
-.....++.+...|.++...-... .++.++.. ++|++++|..-+ +.+ ...++++..-.+||-+++.
T Consensus 16 lLV~Km~~aA~~kg~~~~I~A~s~---~e~~~~~~--~~DvvLlGPQv~-----y~~-~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 16 LLVTKMKKAAESKGKDVTIEAYSE---TELSEYID--NADVVLLGPQVR-----YML-KQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred HHHHHHHHHHHhCCCceEEEEech---hHHHHhhh--cCCEEEEChHHH-----HHH-HHHHHHhcccCCCeEEeCH
Confidence 345566667777788877653332 23333333 669999997633 222 3466788888889988874
No 174
>PRK13055 putative lipid kinase; Reviewed
Probab=67.00 E-value=52 Score=24.73 Aligned_cols=74 Identities=8% Similarity=0.115 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC--ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG--DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g--~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~ 157 (164)
.+....+.+.+.+.+.++....... .-...+.+.+...++|.||+..-. +.+ ..++..++.. ...|+-|+|
T Consensus 19 ~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGD-GTl-----~evvngl~~~~~~~~LgiiP 92 (334)
T PRK13055 19 KKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGD-GTI-----NEVVNGIAPLEKRPKMAIIP 92 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCC-CHH-----HHHHHHHhhcCCCCcEEEEC
Confidence 4555667777888888877644432 345666766666777887765332 212 2334444432 346788888
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-.+
T Consensus 93 ~GT 95 (334)
T PRK13055 93 AGT 95 (334)
T ss_pred CCc
Confidence 544
No 175
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=66.84 E-value=36 Score=22.89 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=48.1
Q ss_pred EEEEEecCChhhHHHHHHHHHHhcc--CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLID--SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+|++.+-++.++..+.+.+..+.+. .+..|.++...+-. ...+.
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~----------------------------------~~~~~ 47 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELE----------------------------------RDPEA 47 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhh----------------------------------cChHH
Confidence 4555555555666666666666555 25555555444321 12344
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhc--CCCEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDL--KLDTLVVG 126 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~--~~dliv~g 126 (164)
++++.+...+.++-+-..+...+-.+.|....+.. +||.+|+-
T Consensus 48 ~~~~~~aia~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~ 92 (164)
T PF11965_consen 48 LEECEAAIARADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIF 92 (164)
T ss_pred HHHHHHHHHhCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEE
Confidence 55666666666666665555555556666665554 56666554
No 176
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=66.80 E-value=44 Score=24.60 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=37.8
Q ss_pred ceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCCC
Q 031202 96 AKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGNP 160 (164)
Q Consensus 96 ~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~~ 160 (164)
+.+-..+...+.. -+..+++++.++|.+++..........--+-.--..|+..+ +.||+++.-+.
T Consensus 71 ~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 71 IALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 4444434333443 44557899999999999765433221111112234566666 69999997654
No 177
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=66.78 E-value=14 Score=28.01 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=38.6
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCC-eEEEEEEeCCCCCc
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGD-LIILIHVQPPNADH 47 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~-~l~ll~v~~~~~~~ 47 (164)
.+-+|.|..+|.++|--.|..++++|+..+- +|.++|+.-...+.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs 71 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYS 71 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhh
Confidence 4678999999999999999999999998765 99999997766554
No 178
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=66.73 E-value=57 Score=25.16 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=24.7
Q ss_pred hhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC
Q 031202 92 RTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 92 ~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
...+.++-...........+++.+++.+.+.+.+|+.+.
T Consensus 231 k~~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 231 EENKVNVIVVFARQFHVFLLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred hcCCCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 334444443223335667788888888888888886654
No 179
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=66.59 E-value=46 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhccCCCeEEEEE
Q 031202 17 SKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+...+++.++++...+++|.++-
T Consensus 13 ~~~i~~~~~~lag~~~~rI~~ip 35 (250)
T TIGR02069 13 DREILREFVSRAGGEDAIIVIIT 35 (250)
T ss_pred hHHHHHHHHHHhCCCCceEEEEe
Confidence 34588888999888787776554
No 180
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=66.52 E-value=20 Score=26.63 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEeec-CCccccceeeccchhHHhcCCCccEEEEe
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSR-GLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~-~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+..+.++.+++. |+||+|.. ...++...+.=.-....+++++.|++.|-
T Consensus 172 ~~~p~vl~AI~~A--D~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vs 222 (303)
T cd07186 172 RPAPEVLEAIEDA--DLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVS 222 (303)
T ss_pred CCCHHHHHHHHhC--CEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEc
Confidence 4678888888888 99999964 34444444443445566778888887764
No 181
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=66.52 E-value=41 Score=23.43 Aligned_cols=63 Identities=21% Similarity=0.105 Sum_probs=35.6
Q ss_pred CceEEEEEeeCC----hhhHHHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEEEe
Q 031202 95 GAKVVAKVYWGD----PREKLCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 95 ~~~~~~~v~~g~----~~~~I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
++.+..+++.|. ....+++...+.++|.|.+..+.... ......-.....+.+..++||+..-
T Consensus 123 ~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~G 190 (231)
T cd02801 123 PIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANG 190 (231)
T ss_pred CCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeC
Confidence 455555555442 35567777888899999885542211 1100001123456667789988754
No 182
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=66.40 E-value=63 Score=25.50 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=16.9
Q ss_pred EEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 9 VGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 9 v~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
+...|+.-.-.+...|..+.+ .+-++.++...
T Consensus 101 vG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D 132 (437)
T PRK00771 101 VGLQGSGKTTTAAKLARYFKK-KGLKVGLVAAD 132 (437)
T ss_pred ECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCC
Confidence 334455445555566655543 45566666543
No 183
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=66.26 E-value=22 Score=26.26 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=46.1
Q ss_pred hhhcCceEEE-EEeeCChhhHHHHHHHhcCCCEEEEeecCCccccce-eeccchhHHhcCCCccEEEEeC
Q 031202 91 SRTKGAKVVA-KVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRV-LLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 91 ~~~~~~~~~~-~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~-~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+.+.+.-+-. .+..-+...++++.|++.+.-+|+.-+.+.-...+. .+......+++++++||.+-=+
T Consensus 13 A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLD 82 (284)
T PRK09195 13 AQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLD 82 (284)
T ss_pred HHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 3444443332 244558899999999999999999876643322221 3456788899999999887433
No 184
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=66.17 E-value=17 Score=21.83 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
-+.+.+++.+.+.|+++..+.+.. .+...+. .....++|++|+....
T Consensus 16 laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~-~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 16 MAAEALEKAAKKLGWEIKVETQGSLGIENELT-AEDIAEADAVILAADV 63 (96)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCcCccCcCC-HHHHhhCCEEEEecCC
Confidence 456778888899999988776554 3334433 2334455999987654
No 185
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=66.09 E-value=11 Score=28.19 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=35.3
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC-CccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG-LGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~-~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.++.++.+++. |+||+|..+ .+.+...+.-.-....++++++|++.|.+-
T Consensus 161 ~a~~~al~AI~~A--DlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~ 213 (310)
T TIGR01826 161 PALREAVEAIREA--DLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNL 213 (310)
T ss_pred CCCHHHHHHHHhC--CEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCC
Confidence 4567888888877 999999543 444443333344455667788999888753
No 186
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=66.07 E-value=28 Score=25.61 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=46.8
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEEeC
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+.+.-+-.- +..-+...++++.|++.+.-+|+..+.+.-.... ..++......++++++||.+-=+
T Consensus 12 ~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlD 82 (281)
T PRK06806 12 KANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFD 82 (281)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECC
Confidence 344455544433 3344889999999999999999887664432222 23556777889999999887533
No 187
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.05 E-value=24 Score=25.97 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=45.6
Q ss_pred hhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEEeC
Q 031202 91 SRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 91 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+.+.+.-+-.- +..-+...++++.|++.+..+|+..+.+.....+ -.+......+++++++||.+-=+
T Consensus 13 A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLD 82 (284)
T PRK12857 13 AEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLD 82 (284)
T ss_pred HHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 44444444333 4444889999999999999999987665432211 13455677888999999987533
No 188
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=65.93 E-value=56 Score=24.71 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCC----hhhHHHHHHHhcCCCEEE-EeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGD----PREKLCDAVEDLKLDTLV-VGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~----~~~~I~~~a~~~~~dliv-~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.+.+.+...++.+.+.+..|+ ..+.+.+.+++.++|.|| +|.- +- -+++..+......|++.||
T Consensus 37 ~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG--s~------~D~aK~ia~~~~~p~i~VP 108 (349)
T cd08550 37 SRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGG--KT------LDTAKAVADRLDKPIVIVP 108 (349)
T ss_pred HHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCc--HH------HHHHHHHHHHcCCCEEEeC
Confidence 345666666666776655554454 245667778888899877 4422 11 1234444444567888888
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 109 Tta 111 (349)
T cd08550 109 TIA 111 (349)
T ss_pred Ccc
Confidence 543
No 189
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=65.57 E-value=28 Score=24.40 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=43.9
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEE
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTV 155 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVli 155 (164)
...+...++..|.++.. ...+-|.+.+++.+.+.++|+|.+...-...... +....+.+-.... ++|++
T Consensus 105 ~~iv~~~l~~~G~~Vi~-LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~--~~~~i~~L~~~~~~~~i~v 174 (213)
T cd02069 105 KNLVGVILSNNGYEVID-LGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDE--MVEVAEEMNRRGIKIPLLI 174 (213)
T ss_pred HHHHHHHHHhCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEccchhccHHH--HHHHHHHHHhcCCCCeEEE
Confidence 34555666777888765 3345789999999999999999997543222221 2344554444433 55554
No 190
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=65.53 E-value=45 Score=24.83 Aligned_cols=66 Identities=14% Similarity=0.012 Sum_probs=39.0
Q ss_pred CceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCCC
Q 031202 95 GAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGNP 160 (164)
Q Consensus 95 ~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~~ 160 (164)
.+.+-..+...+.. -...+.+++.++|-+++-.........--+-.--..|+..+ +.||+++.-+.
T Consensus 77 rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 77 RVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 35555444433444 44557799999998888765332221111112345678888 59999996543
No 191
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=64.89 E-value=39 Score=24.68 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=38.2
Q ss_pred ceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 96 AKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 96 ~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.+-..+...+..+ ++.+++++.++|.+++..........--+-.--..|...++.||+++.-+.
T Consensus 68 ~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~ 134 (285)
T TIGR00674 68 VPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPS 134 (285)
T ss_pred CeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcH
Confidence 44443333333333 455778899999999976543322111111234557778899999997543
No 192
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=64.62 E-value=34 Score=27.15 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
+-.+|..|++.+ +..|..++|.++..... ... .........+.+..+.+.++..|.
T Consensus 16 DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~----------~~~-----------~~~r~~Fl~esL~~L~~~L~~~g~ 71 (472)
T PRK10674 16 DNLALAAACRDP---SARVLALFIATPAQWAA----------HDM-----------APRQAAFINAQLNALQIALAEKGI 71 (472)
T ss_pred hHHHHHHHHhCC---CCCEEEEEEECchhhcc----------CCC-----------CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344666666433 23699999988753211 000 001112345677778888888888
Q ss_pred eEEEEEe--eCChhhHHHHHHHhcCCCEEEEeec
Q 031202 97 KVVAKVY--WGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 97 ~~~~~v~--~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+.-.... .|++.+.|.+.+++.+++-|+....
T Consensus 72 ~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 72 PLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred ceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 8764322 3689999999999999999988644
No 193
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=64.54 E-value=44 Score=23.10 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEee----cCCccccceeeccchhHHhcCCC-ccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGS----RGLGALKRVLLGSVSNHVVTNSS-CPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~----~~~~~~~~~~~gs~~~~v~~~~~-~pVliv~ 157 (164)
..+-+...+...+..+.. +..-+-.++.+..++...+|+++|.- ...++. ...+.+.++.| ++|+++-
T Consensus 12 ~~~gl~~~L~~~~~~~~v-v~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivlt 84 (207)
T PRK15411 12 TRLGLTGYLLSRGVKKRE-INDIETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVFM 84 (207)
T ss_pred HHHHHHHHHHhCCCcceE-EEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEEE
Confidence 344455555544444443 33333344555677788899999982 322211 36777777666 8888885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 85 ~ 85 (207)
T PRK15411 85 A 85 (207)
T ss_pred C
Confidence 3
No 194
>PRK13337 putative lipid kinase; Reviewed
Probab=64.50 E-value=55 Score=24.14 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=39.0
Q ss_pred HHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEeCCC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVKGNP 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~~~~ 160 (164)
...+.+.+.+.+.+++..... ..-...+.+.+.+.++|.||+..-. +.+ ..++..++.. .+.|+-++|..+
T Consensus 21 ~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGD-GTl-----~~vv~gl~~~~~~~~lgiiP~GT 93 (304)
T PRK13337 21 LPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGD-GTL-----NEVVNGIAEKENRPKLGIIPVGT 93 (304)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCC-CHH-----HHHHHHHhhCCCCCcEEEECCcC
Confidence 445555677778877655333 2335555555556667877664332 212 2334444432 246888888654
No 195
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=64.45 E-value=37 Score=22.18 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhc--CCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDL--KLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~--~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
...+++.+.+++.+.+.|+++++. ..+-..+|++...+. ++|-||+..-..+... --....+...++|++=
T Consensus 25 ~tl~~i~~~~~~~a~~~g~~v~~~--QSN~EGelid~I~~a~~~~dgiIINpga~thtS-----~Ai~DAl~~~~~P~vE 97 (140)
T PF01220_consen 25 TTLEDIEQKCKETAAELGVEVEFF--QSNHEGELIDWIHEARDDVDGIIINPGAYTHTS-----IAIRDALKAISIPVVE 97 (140)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEE--E-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT------HHHHHHHHCCTS-EEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEE--ecCCHHHHHHHHHHHHhhCCEEEEccchhcccc-----HHHHHHHHcCCCCEEE
Confidence 445678888888888889888864 333344444443332 3799999765443321 1244577788899887
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 98 VH 99 (140)
T PF01220_consen 98 VH 99 (140)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 196
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=64.43 E-value=26 Score=24.92 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.++++...+.+.++...+ -|....+-+..+.+.++|.+|+|+.
T Consensus 167 ~~lr~~~~~~~~~~~IeV-DGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 167 IQVENRLGNRRVEKLISI-DGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHhcCCCceEEE-ECCCCHHHHHHHHHCCCCEEEEChh
Confidence 344444455676655433 5666677777888899999999954
No 197
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=64.33 E-value=27 Score=25.70 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=47.0
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEEeC
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+.+.-+-.- +..-+...++++.|++.+.-+|+..+.+.-...+ ..+......+++++++||.+-=+
T Consensus 10 ~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD 80 (282)
T TIGR01858 10 DAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLD 80 (282)
T ss_pred HHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 344444444333 4344889999999999999999987665432222 23456788899999999987533
No 198
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=64.18 E-value=61 Score=24.57 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=28.9
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
.|+......+....+ +|.||+.+... ...+.+.+++.+||+
T Consensus 86 kgEsl~Dtarvls~y-~D~Iv~R~~~~---------~~~~~~a~~~~vPVI 126 (336)
T PRK03515 86 HKESIKDTARVLGRM-YDGIQYRGYGQ---------EIVETLAEYAGVPVW 126 (336)
T ss_pred CCCCHHHHHHHHHHh-CcEEEEEeCCh---------HHHHHHHHhCCCCEE
Confidence 355556666666666 89999976532 246778888999997
No 199
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=64.16 E-value=20 Score=22.21 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=31.4
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEEEeCC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTVVKGN 159 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVliv~~~ 159 (164)
......+.+++.++..||+-+.. |.++..+.+.-| |||+.+-+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s---------G~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES---------GRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS---------SHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCeEEEEcCc
Confidence 34567788899988888887652 456777777765 999988654
No 200
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=64.15 E-value=24 Score=23.71 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=28.1
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
+..++|++.++..++|+|++|-. ...-+. + +.+...+.+.+|++.
T Consensus 86 ~~~~~i~~~I~~~~pdiv~vglG-~PkQE~-~----~~~~~~~l~~~v~~~ 130 (171)
T cd06533 86 EEEEEIIERINASGADILFVGLG-APKQEL-W----IARHKDRLPVPVAIG 130 (171)
T ss_pred hhHHHHHHHHHHcCCCEEEEECC-CCHHHH-H----HHHHHHHCCCCEEEE
Confidence 33456899999999999999843 121111 1 344555556666664
No 201
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=64.07 E-value=49 Score=23.44 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=53.1
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++++.++|.++|-.|+-++.+- ...+.++...+...... +. ...-.+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~------~~-----------------------h~~~~~ 48 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESY------MF-----------------------HSPNLH 48 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCcc------cc-----------------------ccCCHH
Confidence 5888999999998888887762 23344444443321100 00 011234
Q ss_pred HHHHHhhhcCceEEEEEeeC---ChhhHHHHHHHhcCCCEEEEeec
Q 031202 86 ILDTLSRTKGAKVVAKVYWG---DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+..+++..|+++......| +..+.+.+..++.+++.+|-|.=
T Consensus 49 ~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI 94 (222)
T TIGR00289 49 LTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAI 94 (222)
T ss_pred HHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcc
Confidence 55566666788765443333 35566666677778888888853
No 202
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=64.06 E-value=31 Score=21.29 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=44.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC--ccEEEE
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS--CPVTVV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~--~pVliv 156 (164)
...+...+++.|.++... ....+.+.+.+.+.+.++|+|.+......... .-.....+.+..+ +++++-
T Consensus 16 ~~~~~~~l~~~G~~v~~l-~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~---~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 16 KNIVAIALRDNGFEVIDL-GVDVPPEEIVEAAKEEDADVVGLSALSTTHME---AMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred HHHHHHHHHHCCCEEEEc-CCCCCHHHHHHHHHHcCCCEEEEecchHhHHH---HHHHHHHHHHhcCCCCeEEEe
Confidence 445556677788887753 33467788999999999999999765433221 1233455666665 555553
No 203
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=63.77 E-value=35 Score=25.92 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHhccC-CCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDS-GDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~-~~~l~ll~v~~~~ 44 (164)
+..+..+++|+++|+.. ..+|+++|-...-
T Consensus 160 ~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl 190 (348)
T PF00180_consen 160 EGIERIARFAFEYARKRGRKKVTVVHKANVL 190 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEESTTTS
T ss_pred chhhHHHHHHHHHHHHhCCceEEEEeccchh
Confidence 45788999999999988 7899999875544
No 204
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=63.74 E-value=27 Score=25.77 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=46.6
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEEeC
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+++.+.-+-.- +..-+...++++.|++.+..+|+..+.+.....+ -.+......+++++++||.+-=+
T Consensus 12 ~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLD 82 (284)
T PRK12737 12 KAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLD 82 (284)
T ss_pred HHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 344445444333 4444889999999999999999987654332211 13456678899999999987533
No 205
>PRK02628 nadE NAD synthetase; Reviewed
Probab=63.66 E-value=60 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=28.2
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCC---CeEEEEEE
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSG---DLIILIHV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~---~~l~ll~v 40 (164)
..++++|+++|..+|.-++..+.+.....+ .+|+.++.
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 467999999999999877777776544344 56776666
No 206
>PRK06801 hypothetical protein; Provisional
Probab=63.63 E-value=31 Score=25.50 Aligned_cols=68 Identities=13% Similarity=-0.023 Sum_probs=47.8
Q ss_pred hhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEEeC
Q 031202 91 SRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 91 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+.+.+.-+-.- +..-+...++++.|++.+.-+|+..+.+.....+ ..+......+++++++||-+-=+
T Consensus 13 A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlD 82 (286)
T PRK06801 13 ARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLD 82 (286)
T ss_pred HHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 44445544433 4444789999999999999999988765543322 24567888899999999877533
No 207
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=63.60 E-value=36 Score=26.99 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=37.0
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+.++.+.+.+...|++.- +..|++...+.+++++.+++-|+-...
T Consensus 53 l~~sL~~L~~~L~~~gi~L~--v~~~~~~~~l~~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 53 LLQSLQALQQSLAELGIPLL--VREGDPEQVLPELAKQLAATTVFWNRD 99 (461)
T ss_pred HHHHHHHHHHHHHHcCCceE--EEeCCHHHHHHHHHHHhCcceEEeeee
Confidence 44566777777777787776 779999999999999998777776644
No 208
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=63.45 E-value=63 Score=24.48 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|+......+....+ +|.||+.+...+. +..-......+.+.+++.+||+=
T Consensus 92 gEsl~Dtarvls~~-~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVIN 142 (335)
T PRK04523 92 EEHIREVARVLSRY-VDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVIN 142 (335)
T ss_pred CcCHHHHHHHHHHh-CcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEE
Confidence 45556666666677 8999997653321 11001123567788889999874
No 209
>PRK06988 putative formyltransferase; Provisional
Probab=63.35 E-value=60 Score=24.22 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=28.3
Q ss_pred HHHHHhhhcCceEEEEEeeCCh-hhHHHHHHHhcCCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDP-REKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~-~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+.+.+.|+++.. ..+. .+++.+..++.++|++|+...+
T Consensus 46 ~v~~~A~~~gip~~~---~~~~~~~~~~~~l~~~~~Dliv~~~~~ 87 (312)
T PRK06988 46 SVAAVAAEHGIPVIT---PADPNDPELRAAVAAAAPDFIFSFYYR 87 (312)
T ss_pred HHHHHHHHcCCcEEc---cccCCCHHHHHHHHhcCCCEEEEehhc
Confidence 456677788888753 1222 3467788889999999987653
No 210
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=63.09 E-value=17 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=22.4
Q ss_pred CceEEEEEeeC--C--hhhHHHHHHHhcCCCEEEEee
Q 031202 95 GAKVVAKVYWG--D--PREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 95 ~~~~~~~v~~g--~--~~~~I~~~a~~~~~dliv~g~ 127 (164)
++++... .| + -.++|++.+++.++|+|++|-
T Consensus 74 ~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 74 KLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred CCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEc
Confidence 5665543 33 2 247789999999999999984
No 211
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=63.02 E-value=37 Score=26.64 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=27.6
Q ss_pred CceEEEEEeeCChhhHHHHH--HHhcCCCEEEEe-ecCCccccceeeccchh
Q 031202 95 GAKVVAKVYWGDPREKLCDA--VEDLKLDTLVVG-SRGLGALKRVLLGSVSN 143 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I~~~--a~~~~~dliv~g-~~~~~~~~~~~~gs~~~ 143 (164)
..-+.+.|..|+..+.|.+. |..+++|.|-+- +.+.+-+.....|.+++
T Consensus 146 ~P~iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT~e 197 (509)
T PF09043_consen 146 KPVIYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGATTE 197 (509)
T ss_dssp SSEEEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S--S-
T ss_pred CCeEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCCCCC
Confidence 33455557889999999876 888999988654 55666666566665544
No 212
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=62.98 E-value=40 Score=22.08 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=24.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+|+|.++|.++|..++..+.+..... .++++....
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~ 35 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGY 35 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-ST
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCc
Confidence 47899999999999999888876653 567775544
No 213
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=62.86 E-value=28 Score=23.36 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=39.3
Q ss_pred hHHHHHHHHhhhc--CceEEEEE---eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 82 EVLDILDTLSRTK--GAKVVAKV---YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~~v---~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
+..+.+.+.+.+. ++.+.... ...+-.++|++.++..++|+|++|-.. ..-+. ...+...+.+.+|++.
T Consensus 59 ~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~-PkQE~-----~~~~~~~~l~~~v~i~ 132 (172)
T PF03808_consen 59 EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA-PKQER-----WIARHRQRLPAGVIIG 132 (172)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC-CHHHH-----HHHHHHHHCCCCEEEE
Confidence 3444444444443 55554321 123568999999999999999998432 21111 1344555566665554
No 214
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=62.82 E-value=10 Score=24.71 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHhhhcCceEEEEE------eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAKV------YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v------~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
+...+.+.|..+-..- ..|+......+....+ +|+||+..... ...+.+..++.+||+
T Consensus 57 Fe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~-~D~iv~R~~~~---------~~~~~~a~~~~vPVI 120 (142)
T PF02729_consen 57 FEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRY-VDAIVIRHPSH---------GALEELAEHSSVPVI 120 (142)
T ss_dssp HHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHH-CSEEEEEESSH---------HHHHHHHHHCSSEEE
T ss_pred HHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHh-hheEEEEeccc---------hHHHHHHHhccCCeE
Confidence 3444455565544332 2255566666677777 89999975543 246678888999996
No 215
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=62.17 E-value=67 Score=24.37 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=29.9
Q ss_pred eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 103 YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 103 ~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
..|+..+...+....+ +|.||+.+.... ....+++++.+||+=
T Consensus 85 ~kgEsl~Dtarvls~y-~D~IviR~~~~~---------~~~~~a~~~~vPVIN 127 (338)
T PRK08192 85 SKGESLYDTARVLSTY-SDVIAMRHPDAG---------SVKEFAEGSRVPVIN 127 (338)
T ss_pred CCCCCHHHHHHHHHHc-CCEEEEeCCchh---------HHHHHHHhCCCCEEE
Confidence 3466667777777777 899999754332 356677888899764
No 216
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.13 E-value=34 Score=20.98 Aligned_cols=71 Identities=18% Similarity=0.114 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
-+..+...+++.|.++... -.....+++.+.+++.++|+|.+.......+.. .-..++.+=...+...+++
T Consensus 16 Gl~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~--~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGISVSMTPNLPE--AKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHH--HHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHH--HHHHHHHHHhcCCCCEEEE
Confidence 3556666777778877742 122345999999999999999997742222221 2334555434445433333
No 217
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=62.05 E-value=21 Score=21.06 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+-+.+++.+.+.|+++..+.+...-.+.-+..-.-..+|++|+....
T Consensus 16 Aae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 16 AAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 34667777888898888776554322222322223344888887654
No 218
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=61.92 E-value=31 Score=22.13 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEEE
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTVV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVliv 156 (164)
...+...++..|.++... ......+++++.+.+.++|.|+|.+...+... .+..+.+.+-.... ...+++
T Consensus 19 ~~iv~~~l~~~GfeVi~l-g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~--~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 19 AKVIATAYADLGFDVDVG-PLFQTPEEIARQAVEADVHVVGVSSLAGGHLT--LVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred HHHHHHHHHhCCcEEEEC-CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHH--HHHHHHHHHHhcCCCCCEEEE
Confidence 345556677778887642 11256789999999999999999765433222 24555665544332 333444
No 219
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=61.53 E-value=63 Score=23.85 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=26.1
Q ss_pred hhhcCceEEEEEe-eC---ChhhHHHHHHHhcCCCEEEEeec
Q 031202 91 SRTKGAKVVAKVY-WG---DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 91 ~~~~~~~~~~~v~-~g---~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+++.|+++...-. .. +....+.+..++.++|++|+...
T Consensus 133 A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 133 AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeCh
Confidence 6677888764211 11 23456888899999999999754
No 220
>PRK13057 putative lipid kinase; Reviewed
Probab=61.51 E-value=45 Score=24.35 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
..+++.+.+++.+.++...... ..-...+.+.+ ..++|.||+..-. +. +..++..++ ..+.|+-++|-.+
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GGD-GT-----v~~v~~~l~-~~~~~lgiiP~GT 84 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGGD-GT-----LNAAAPALV-ETGLPLGILPLGT 84 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECch-HH-----HHHHHHHHh-cCCCcEEEECCCC
Confidence 4567777778888887765443 22334444443 4556877765332 21 233444444 4578999998654
No 221
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=60.90 E-value=39 Score=23.91 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=24.0
Q ss_pred eEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 97 KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 97 ~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
++..+| -|....+-+..+...++|.+|.|+.
T Consensus 169 ~~~IeV-DGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 169 DILIEV-DGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred CeEEEE-eCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 444433 5777888888999999999999974
No 222
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=60.73 E-value=11 Score=26.82 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=31.5
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
...+..++.+.+.+.|.|++|.+. .. .-+..+...+-+..+.||++.|...
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~-~~---~~~d~vv~~ik~~~~lPvilfPg~~ 69 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSD-TG---VTLDNVVALIKRVTDLPVILFPGSP 69 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-ST-HC---HHHHHHHHHHHHHSSS-EEEETSTC
T ss_pred CCcHHHHHHHHhcCCCEEEECCCC-Cc---cchHHHHHHHHhcCCCCEEEeCCCh
Confidence 345666777788899999999775 11 1133445555555889999998654
No 223
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.66 E-value=23 Score=23.95 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEe--CCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcC
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQ--PPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKG 95 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
..-+..++++|+..|++...++.. ...... . .....+...+.++.+.+.+.+.|
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~--------------~----------~~~~~~~~~~~l~~l~~~a~~~g 125 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPED--------------D----------TEENWERLAENLRELAEIAEEYG 125 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTS--------------S----------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCC--------------C----------HHHHHHHHHHHHHHHHhhhhhhc
Confidence 567788889999999999888865 121111 0 00111234556777777777889
Q ss_pred ceEEEEEeeCCh---h---hHHHHHHHhcCCCE
Q 031202 96 AKVVAKVYWGDP---R---EKLCDAVEDLKLDT 122 (164)
Q Consensus 96 ~~~~~~v~~g~~---~---~~I~~~a~~~~~dl 122 (164)
+.+..+-..+.. . +.+.++++..+.+-
T Consensus 126 v~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (213)
T PF01261_consen 126 VRIALENHPGPFSETPFSVEEIYRLLEEVDSPN 158 (213)
T ss_dssp SEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTT
T ss_pred ceEEEecccCccccchhhHHHHHHHHhhcCCCc
Confidence 988877554433 2 88888888876543
No 224
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=60.38 E-value=10 Score=28.09 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHhcCCCEEEEeec-CCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSR-GLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~-~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+..+.++.+++. |+||+|.. ..+.+...+.-.-....++++++|++.|.+
T Consensus 172 ~~~p~~l~AI~~A--D~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~n 223 (300)
T PF01933_consen 172 KANPEALEAIEEA--DLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSN 223 (300)
T ss_dssp -B-HHHHHHHHH---SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-S
T ss_pred CCCHHHHHHHHhC--CEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcC
Confidence 4568888888888 99999954 344444433333456677777799888864
No 225
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=60.22 E-value=21 Score=26.04 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCceEEEEEeeC----ChhhHHHHHHHhcCCCEEEEeec
Q 031202 85 DILDTLSRTKGAKVVAKVYWG----DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g----~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..++...+.+|+++...-..+ ...+.+.+..+++++|++|++..
T Consensus 128 ~dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARY 175 (287)
T COG0788 128 DDLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARY 175 (287)
T ss_pred HHHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhh
Confidence 455666667788877653332 34678999999999999999753
No 226
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=59.89 E-value=69 Score=23.76 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=38.3
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
-.-++.+++++.++|-+++-..-.....+.-+=.--..|+..++.|++++.-+.+
T Consensus 87 eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~ 141 (299)
T COG0329 87 EAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSR 141 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 3456778899999999999876554433222223456688888999999975543
No 227
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=59.82 E-value=43 Score=21.68 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g 126 (164)
+.....+.+.+++.|.++.......|-.+.|.+..++ .++|+||..
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 3445566677777888877665555444555554433 268999985
No 228
>PRK14057 epimerase; Provisional
Probab=59.77 E-value=34 Score=24.80 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=28.9
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
++++...+.+.++...+ -|.+..+-+..+.+.++|.+|+|+.
T Consensus 182 ~lr~~~~~~~~~~~IeV-DGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 182 QLLCLLGDKREGKIIVI-DGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHhcCCCceEEE-ECCCCHHHHHHHHHCCCCEEEEChH
Confidence 33344455666655433 5667777778888899999999954
No 229
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=59.65 E-value=44 Score=25.47 Aligned_cols=30 Identities=10% Similarity=-0.015 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+++.+++|+++|+..+.+|+++|-...-
T Consensus 163 ~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvl 192 (349)
T TIGR00169 163 PEIERIARVAFEMARKRRKKVTSVDKANVL 192 (349)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 457888999999998776688888766554
No 230
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=59.64 E-value=28 Score=25.71 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc--eeeccchhHHhcCCCccEEEEeC
Q 031202 89 TLSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR--VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~--~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+.+++.+.-+-.- +..-+...+|++.|++.+...||=.+.+...+.. ..+-.....++.+.++||.+--+
T Consensus 11 ~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlD 83 (286)
T COG0191 11 DKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLD 83 (286)
T ss_pred HHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECC
Confidence 3444555554433 3334889999999999999999988776543322 22334677788889999987543
No 231
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=59.26 E-value=40 Score=24.00 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=28.7
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
++++...+.+.++...| -|.+..+-+..+.+.++|.+|+|+.
T Consensus 158 ~lr~~~~~~~~~~~IeV-DGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 158 ELKALRERNGLEYLIEV-DGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHhcCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEEChH
Confidence 34444455676666544 5566666777888889999999964
No 232
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=59.18 E-value=53 Score=24.11 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=38.1
Q ss_pred CceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+-..+.. +.. -++.+.+++.++|.+++..........--+-.--..|+..++.||+++..
T Consensus 69 ~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 69 RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3554444433 433 44557799999999999765433221111112345577888999999973
No 233
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=59.10 E-value=66 Score=23.31 Aligned_cols=78 Identities=17% Similarity=0.066 Sum_probs=44.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
++.+.+.+.+. ..+.+-..+...+. .-.+.+.+++.++|-+++..........--+-.--..|+..++.||+++..+
T Consensus 54 ~l~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P 132 (281)
T cd00408 54 EVIEAVVEAVA-GRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIP 132 (281)
T ss_pred HHHHHHHHHhC-CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 33444444332 23444443433333 3455577899999999997654333221112233456777889999999765
Q ss_pred C
Q 031202 160 P 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 133 ~ 133 (281)
T cd00408 133 G 133 (281)
T ss_pred c
Confidence 4
No 234
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.94 E-value=68 Score=23.40 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHH---HHHHHhcCCCEEEEeecCCccc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKL---CDAVEDLKLDTLVVGSRGLGAL 133 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I---~~~a~~~~~dliv~g~~~~~~~ 133 (164)
..+.+..+++..++.+.......++...+ ++.+...++|+|++-+.|+...
T Consensus 115 a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~ 168 (272)
T TIGR00064 115 AIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQN 168 (272)
T ss_pred HHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence 35566667777776544222223555433 3445567889999988877653
No 235
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=58.87 E-value=29 Score=20.34 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=36.1
Q ss_pred HHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 89 TLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
+++++.|++++..+.. ++-...+.+..+..++|++|--..+...... --|......+-..++|++
T Consensus 24 ~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~-~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 24 KFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPH-EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceec-cCcHHHHHHHHHcCCCee
Confidence 3445678887643211 1212469999999999999986543121110 123344555555555543
No 236
>PRK14974 cell division protein FtsY; Provisional
Probab=58.71 E-value=78 Score=24.01 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhh---HHHHHHHhcCCCEEEEeecCCcc
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPRE---KLCDAVEDLKLDTLVVGSRGLGA 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~---~I~~~a~~~~~dliv~g~~~~~~ 132 (164)
...+++..++...|+.+......+++.. ..+++++..++|+|++-+.|+..
T Consensus 182 ~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 182 GAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccC
Confidence 4455666677777777654333345554 33445666788988888777664
No 237
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=58.63 E-value=57 Score=22.37 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=22.6
Q ss_pred EEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 8 GVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 8 Lv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+|.++|.-+|-.++..+.+ .+.++..+++...
T Consensus 2 vv~lSGG~DSs~~~~~~~~----~g~~v~~~~~~~~ 33 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKD----EGYEVHAITFDYG 33 (201)
T ss_pred EEEeccHHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 6788888888766655443 3567888888654
No 238
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=58.37 E-value=71 Score=23.41 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=37.4
Q ss_pred HHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeCCC
Q 031202 86 ILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKGNP 160 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~~~ 160 (164)
.+.+.+++.+.+++..... ..-+.++.+.+...++|.||+..-. +.+ ..++..++.+ .++|+-++|-.+
T Consensus 18 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGD-GTi-----~ev~ngl~~~~~~~~~~lgiiP~GT 90 (293)
T TIGR03702 18 EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGD-GTL-----REVATALAQIRDDAAPALGLLPLGT 90 (293)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCC-hHH-----HHHHHHHHhhCCCCCCcEEEEcCCc
Confidence 3444566778777654332 2335666666666667777654322 212 2344445432 246788888544
No 239
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=58.36 E-value=64 Score=23.52 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
......+.+.+.+...|..+...-..++.. ..+++.....++|-||+........ ..... -+...++||+++
T Consensus 12 ~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~-----~~~l~-~~~~~~iPvV~~ 85 (302)
T TIGR02634 12 RWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVL-----SNAVQ-EAKDEGIKVVAY 85 (302)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHH-----HHHHH-HHHHCCCeEEEe
Confidence 345667777778888887765432233433 3566677778889888865322111 11122 245567888888
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 86 d~ 87 (302)
T TIGR02634 86 DR 87 (302)
T ss_pred cC
Confidence 54
No 240
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=58.17 E-value=76 Score=23.70 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=42.0
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc---cccceeeccchhHHhcCCCccEEEEeC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG---ALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~---~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+.+++.|+++... .. .++..+.+.. |.+++|...-. .+-.....+...-++++...|++++-.
T Consensus 161 ~~ak~L~~~gI~~~~I--~D---sa~~~~~~~v--d~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ae 229 (301)
T COG1184 161 IMAKELRQSGIPVTVI--VD---SAVGAFMSRV--DKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAE 229 (301)
T ss_pred HHHHHHHHcCCceEEE--ec---hHHHHHHHhC--CEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEee
Confidence 4445666778887754 23 2344445555 99999987522 233333445566788999999999854
No 241
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.07 E-value=42 Score=25.56 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=46.7
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-cce---------------eeccchhHHhcCCCcc
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-KRV---------------LLGSVSNHVVTNSSCP 152 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~~~---------------~~gs~~~~v~~~~~~p 152 (164)
.+++.+.-+-.- +..-+...++++.|++.+..+|+.-+.+.... ... .+......+++++++|
T Consensus 10 ~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VP 89 (345)
T cd00946 10 YAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVP 89 (345)
T ss_pred HHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCC
Confidence 344445544433 44458899999999999999999877653221 111 3556677889999999
Q ss_pred EEEEeC
Q 031202 153 VTVVKG 158 (164)
Q Consensus 153 Vliv~~ 158 (164)
|.+-=+
T Consensus 90 ValHLD 95 (345)
T cd00946 90 VVLHTD 95 (345)
T ss_pred EEEECC
Confidence 877533
No 242
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=58.04 E-value=80 Score=23.91 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=29.7
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.|+......+....+ +|.||+.+... ...+.+.+.+.+||+=-
T Consensus 87 kgEsl~DTarvls~y-~D~iv~R~~~~---------~~~~~~a~~~~vPVINa 129 (334)
T PRK01713 87 HKESMKDTARVLGRM-YDAIEYRGFKQ---------SIVNELAEYAGVPVFNG 129 (334)
T ss_pred CCcCHHHHHHHHHHh-CCEEEEEcCch---------HHHHHHHHhCCCCEEEC
Confidence 355566666666677 89999965422 24677888889998743
No 243
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=57.79 E-value=19 Score=23.54 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=38.2
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCC-cccc---ceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGL-GALK---RVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~-~~~~---~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
..+.|.+.+++++++.||+|-+-. .+.. ....-..++.+-++.+.||..+-.+..
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERlt 99 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERLS 99 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCccC
Confidence 578999999999999999996531 1111 111234567777788899998866543
No 244
>PRK08194 tartrate dehydrogenase; Provisional
Probab=57.59 E-value=46 Score=25.40 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+++.+++|+++|+..+.+|+++|-...-
T Consensus 161 ~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl 190 (352)
T PRK08194 161 KGTERAMRYAFELAAKRRKHVTSATKSNGI 190 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCcchh
Confidence 457889999999998876778888876543
No 245
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=57.55 E-value=10 Score=25.03 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=9.9
Q ss_pred hhHHHHHHHhcCCCEEEEee
Q 031202 108 REKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~ 127 (164)
.+.|.++++.+++|+|++|.
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g 71 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGG 71 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--
T ss_pred HHHHHHHHHHcCCeEEEEcC
Confidence 34555666666666666643
No 246
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=57.53 E-value=43 Score=25.54 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=45.8
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-cc---ee------------eccchhHHhcCCCcc
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-KR---VL------------LGSVSNHVVTNSSCP 152 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~~---~~------------~gs~~~~v~~~~~~p 152 (164)
.+.+.+.-+-.- +..-+...+|++.|++.+..+|+..+.+.... .. .. +......+++++++|
T Consensus 15 ~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VP 94 (350)
T PRK09197 15 RAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVP 94 (350)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCC
Confidence 344455544433 33448899999999999999999876643322 10 11 345677888999999
Q ss_pred EEEEeC
Q 031202 153 VTVVKG 158 (164)
Q Consensus 153 Vliv~~ 158 (164)
|.+-=+
T Consensus 95 ValHLD 100 (350)
T PRK09197 95 VILHTD 100 (350)
T ss_pred EEEECC
Confidence 887533
No 247
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=57.25 E-value=36 Score=24.99 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=46.0
Q ss_pred hhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEEeC
Q 031202 91 SRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 91 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+...+.-+-.- +..-+...++++.|++.+..+|+--+.+.....+ ..+......+.+++++||.+-=+
T Consensus 8 A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLD 77 (276)
T cd00947 8 AREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLD 77 (276)
T ss_pred HHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 44445444333 4444889999999999999999887654432222 23556777888999999987543
No 248
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=57.23 E-value=12 Score=24.46 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=32.3
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHh
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVV 146 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~ 146 (164)
+++.+.+++.|++++..-......+.+.+.+++. |.|.++.-....+.+.+.++.....+
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~a--d~I~~~GG~~~~l~~~l~~t~l~~~i 62 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREA--DAIFLGGGDTFRLLRQLKETGLDEAI 62 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHS--SEEEE--S-HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhC--CEEEECCCCHHHHHHHHHhCCHHHHH
Confidence 4566777778888665444444455777777766 88888754333333333333333333
No 249
>PLN02828 formyltetrahydrofolate deformylase
Probab=57.12 E-value=75 Score=23.29 Aligned_cols=85 Identities=9% Similarity=-0.043 Sum_probs=50.3
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
..+|.|.++++.....++-++.+- ...+++|.++-...+...
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~~~-g~l~~eI~~ViSn~~~~~------------------------------------- 111 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRWQD-GRLPVDITCVISNHERGP------------------------------------- 111 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhhhc-CCCCceEEEEEeCCCCCC-------------------------------------
Confidence 468999999998887777776553 334555554444332210
Q ss_pred HHHHHHHhhhcCceEEEEEee--CChhhHHHHHHHhcCCCEEEEeec
Q 031202 84 LDILDTLSRTKGAKVVAKVYW--GDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
...+.+.+++.|+++...-.. ....+.+++..+ ++|++|+...
T Consensus 112 ~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAgy 156 (268)
T PLN02828 112 NTHVMRFLERHGIPYHYLPTTKENKREDEILELVK--GTDFLVLARY 156 (268)
T ss_pred CchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEeee
Confidence 013444566778887643222 222345666665 5899999754
No 250
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=57.12 E-value=59 Score=24.91 Aligned_cols=30 Identities=7% Similarity=-0.114 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..++..+++|+++|+..+.+|+++|-...-
T Consensus 166 ~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl 195 (358)
T PRK00772 166 EEIERIARVAFELARKRRKKVTSVDKANVL 195 (358)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECcccc
Confidence 557888999999998776688888866554
No 251
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=57.06 E-value=18 Score=27.00 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC-CccccceeeccchhHHhcCCCccEEEEeC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG-LGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~-~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+..+.++.+++. |+||+|..+ .+.+...+.-.-..+.++++++|++.+.+
T Consensus 164 ~~~~~a~~AI~~A--D~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N 215 (308)
T cd07187 164 KANPEALEAIEEA--DLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICN 215 (308)
T ss_pred CCCHHHHHHHHhC--CEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEec
Confidence 4567888888887 999999543 34444333334455566788888888764
No 252
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=57.03 E-value=80 Score=23.58 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=32.1
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.|+..+...+....+++|.||+.+... ...+.+.+.+.+||+=.
T Consensus 86 kgEs~~Dta~vls~y~~D~iv~R~~~~---------~~~~~~a~~~~vPVINa 129 (305)
T PRK00856 86 KGETLADTIRTLSAMGADAIVIRHPQS---------GAARLLAESSDVPVINA 129 (305)
T ss_pred CCcCHHHHHHHHHhcCCCEEEEeCCCh---------HHHHHHHHHCCCCEEEC
Confidence 356667777777778899999975432 24667788889999754
No 253
>PRK02929 L-arabinose isomerase; Provisional
Probab=56.27 E-value=73 Score=25.65 Aligned_cols=48 Identities=2% Similarity=0.021 Sum_probs=33.7
Q ss_pred hhhHHHHHHHhcC----CCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 107 PREKLCDAVEDLK----LDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 107 ~~~~I~~~a~~~~----~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
-.++|.+.+++.+ ||.||+-.+..+. .+..-.+++..++||+++..++
T Consensus 56 ~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~------a~~~i~~~~~l~~PvL~~~~Q~ 107 (499)
T PRK02929 56 TPDEITAVCREANYDDNCAGVITWMHTFSP------AKMWIRGLSALQKPLLHLHTQF 107 (499)
T ss_pred CHHHHHHHHHHccccCCCcEEEEccCCCch------HHHHHHHHHHcCCCEEEEecCC
Confidence 3455666666666 9999997665543 2345557899999999997643
No 254
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=56.26 E-value=76 Score=23.13 Aligned_cols=73 Identities=19% Similarity=0.401 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee--CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW--GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVliv~ 157 (164)
.+..+++.+.+...++++...... |+. ..+.+.+.+.++|.||+..-. +. +..++..+..... .|+-++|
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~ivv~GGD-GT-----l~~v~~~l~~~~~~~~lgiiP 90 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKGDA-ARYVEEARKFGVDTVIAGGGD-GT-----INEVVNALIQLDDIPALGILP 90 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccH-HHHHHHHHhcCCCEEEEECCC-Ch-----HHHHHHHHhcCCCCCcEEEEc
Confidence 344556677777788887754333 243 344544545567877764322 21 2233444544333 3666787
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-.+
T Consensus 91 ~Gt 93 (293)
T TIGR00147 91 LGT 93 (293)
T ss_pred CcC
Confidence 543
No 255
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=56.07 E-value=63 Score=23.92 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=37.6
Q ss_pred CceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+-..+. ++..+ ...+.+++.++|-+++..........--+-.--..|+..++.||+++..
T Consensus 76 ~~pvi~gv~-~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 76 RVPVIAGAG-GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred CCcEEEecC-CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 344444443 24433 3457788999999998765433221111123345578888999999974
No 256
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=56.03 E-value=69 Score=22.53 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhcCceEEEEEee-C---------ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCcc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW-G---------DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCP 152 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~-g---------~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~p 152 (164)
....+.+.+++.++++-..... | +......+.+.+.++|+|-+...+ . -...+++.+.+++|
T Consensus 110 ~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--~------~~~~~~i~~~~~~p 181 (235)
T cd00958 110 ELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--D------AESFKEVVEGCPVP 181 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--C------HHHHHHHHhcCCCC
Confidence 4555556667778776544322 1 112222444778899999885221 1 13467788889999
Q ss_pred EEEEeC
Q 031202 153 VTVVKG 158 (164)
Q Consensus 153 Vliv~~ 158 (164)
|++.-.
T Consensus 182 vv~~GG 187 (235)
T cd00958 182 VVIAGG 187 (235)
T ss_pred EEEeCC
Confidence 877643
No 257
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=55.87 E-value=40 Score=25.37 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=23.4
Q ss_pred ChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 14 SPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.+++.+++|+++|+..+.+|+++|-...
T Consensus 140 r~~~eRi~r~AF~~A~~r~~~Vt~v~KaNv 169 (322)
T TIGR02088 140 REGSERIARFAFNLAKERNRKVTCVHKANV 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCcc
Confidence 456788999999999888777777766544
No 258
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=55.80 E-value=84 Score=23.45 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC---ccccceeeccchhHHhcCCCccEEEEeC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL---GALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~---~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+.+.|+++... .. ..+....+..++|.+++|...- ++.-.........-++++..+||+++=+
T Consensus 171 a~~L~~~gI~vtlI--~D---sa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 171 AWELMQDGIDVTLI--TD---SMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAP 239 (303)
T ss_pred HHHHHHCCCCEEEE--Ch---hHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecc
Confidence 34455568877753 22 2333444556789999998642 1222222223444456888899999844
No 259
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.80 E-value=42 Score=23.11 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN 148 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~ 148 (164)
...+...++..|.++.. .-.+-|.+.+++.+++.++|+|.+.......... +....+.+-+.
T Consensus 101 ~~~v~~~l~~~G~~vi~-LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~--~~~~i~~l~~~ 162 (197)
T TIGR02370 101 KNIVVTMLRANGFDVID-LGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYG--QKDINDKLKEE 162 (197)
T ss_pred HHHHHHHHHhCCcEEEE-CCCCCCHHHHHHHHHHcCCCEEEEccccccCHHH--HHHHHHHHHHc
Confidence 34556677777888775 3445788999999999999999998653333322 33444544444
No 260
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=55.37 E-value=76 Score=23.71 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=35.6
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
....+.+++..|.+.+-++-|+-..++..+. |...-+-+++..+|+.++++.
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtESRP~~e----G~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTESRPRGE----GRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEcCCCcch----HHHHHHHHHHcCCceEEEech
Confidence 3466777777777776555555555555444 667777888888999988763
No 261
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=55.35 E-value=47 Score=20.43 Aligned_cols=65 Identities=15% Similarity=0.013 Sum_probs=37.8
Q ss_pred hhhcCceEEEEEeeCC-hhhHHHHHHHh-cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 91 SRTKGAKVVAKVYWGD-PREKLCDAVED-LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 91 ~~~~~~~~~~~v~~g~-~~~~I~~~a~~-~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
+++.|++++....-.+ -...|.+..++ .++|+||--..+...-...--|......+-...+|++.
T Consensus 38 L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 38 LADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 3446888876422111 23678999999 99999988654333100111244455555555788765
No 262
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=55.27 E-value=73 Score=22.63 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=28.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+++.+|.++|..+|-.++-||.. .+..++.+++.+.-
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~----~~~ev~alsfdYGQ 38 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKK----EGYEVHALTFDYGQ 38 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHh----cCCEEEEEEeeCCC
Confidence 46888888888888777666554 56888888887664
No 263
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=55.18 E-value=81 Score=23.24 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhhcCceEEEEEee--C------------ChhhHHHHHHHhcCCCEEEE--eecC-CccccceeeccchhH
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYW--G------------DPREKLCDAVEDLKLDTLVV--GSRG-LGALKRVLLGSVSNH 144 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~--g------------~~~~~I~~~a~~~~~dliv~--g~~~-~~~~~~~~~gs~~~~ 144 (164)
+...++.+.|+..|+.++.++.. | .-.++..++.++.++|.|.+ |+-+ .......+--...+.
T Consensus 115 ~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~ 194 (282)
T TIGR01859 115 ALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKE 194 (282)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHH
Confidence 34556667777888888766533 1 12455677777789999994 5421 111111111234566
Q ss_pred HhcCCCccEEEEe
Q 031202 145 VVTNSSCPVTVVK 157 (164)
Q Consensus 145 v~~~~~~pVliv~ 157 (164)
+....++|+...-
T Consensus 195 i~~~~~iPlv~hG 207 (282)
T TIGR01859 195 IKELTNIPLVLHG 207 (282)
T ss_pred HHHHhCCCEEEEC
Confidence 7777789987654
No 264
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=55.17 E-value=63 Score=21.82 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
..+++-..+.+.....++.++-+....-. |... -+....+..+.+.+.+.+.....|+.
T Consensus 4 ~~~~~El~~~a~l~~g~i~VvGcSTSEV~----------G~~I-----------G~~ss~eva~~i~~~l~~~~~~~gi~ 62 (172)
T TIGR01440 4 TTVLEELKDASNLKKGDLFVIGCSTSEVI----------GGKI-----------GTNSSMEVAETIVNALDVVLKKTGVT 62 (172)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecchHHhC----------Cccc-----------CCcChHHHHHHHHHHHHHHhhhcCeE
Confidence 45566666767777777777776555432 1111 11122234567888888888899999
Q ss_pred EEEEEeeC-ChhhHHHH-HHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 98 VVAKVYWG-DPREKLCD-AVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 98 ~~~~v~~g-~~~~~I~~-~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
..+...+. +-+=.+-+ .++.++.+.+-+-...+. .||.+.+.-++.+-||.+=
T Consensus 63 lA~Q~CEHlNRALvvEr~~a~~~~le~V~VvP~~~A------GGs~a~~Ay~~~~dPV~VE 117 (172)
T TIGR01440 63 LAFQGCEHINRALVMERSVAEPLGMEEVSVVPDLHA------GGSLATYAFQHMKDPVEVE 117 (172)
T ss_pred EEEechhhhhHHHHHhHHHHHHcCCceEEEecCCCC------CcHHHHHHHHhCCCCEEEE
Confidence 88766555 55555555 577787777766333232 3677888888888888874
No 265
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=55.16 E-value=98 Score=24.03 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=27.9
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
.+.|+.++|.=+|.- |.+++-+.|.+++.+|+..++.
T Consensus 176 Gk~l~LlSGGIDSPV----A~~l~mkRG~~v~~v~f~~~p~ 212 (383)
T COG0301 176 GKVLLLLSGGIDSPV----AAWLMMKRGVEVIPVHFGNPPY 212 (383)
T ss_pred CcEEEEEeCCCChHH----HHHHHHhcCCEEEEEEEcCCCC
Confidence 577888887766764 4556667999999999976653
No 266
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=55.12 E-value=39 Score=27.01 Aligned_cols=48 Identities=4% Similarity=-0.008 Sum_probs=33.1
Q ss_pred hhhHHHHHHHh----cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 107 PREKLCDAVED----LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 107 ~~~~I~~~a~~----~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
-.+.+.+..++ .+||.||+-.+..+. .+..-.+++..++||+++..+.
T Consensus 50 ~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~------a~~~i~~~~~l~~PvL~~~~q~ 101 (484)
T cd03557 50 TPDEILAVCREANADDNCAGVITWMHTFSP------AKMWIAGLTALQKPLLHLHTQF 101 (484)
T ss_pred CHHHHHHHHHHccccCCccEEEEccCCCch------HHHHHHHHHHcCCCEEEEccCC
Confidence 34555566666 459999997665543 2345557899999999997654
No 267
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=55.12 E-value=52 Score=23.20 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+++++...+.+.++...+ -|....+-+..+.+.++|.+|+|+.
T Consensus 153 kI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 153 KLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 34444455555566555434 5655566677778889999999964
No 268
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=55.09 E-value=17 Score=25.28 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEee
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~ 127 (164)
+..+++++...+.+..+...+ -|....+.+..+.+.++|.+|.|+
T Consensus 151 ~KI~~l~~~~~~~~~~~~I~v-DGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 151 EKIRELRKLIPENGLDFEIEV-DGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHTCGSEEEE-ESSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHhcCCceEEEE-ECCCCHHHHHHHHHcCCCEEEECH
Confidence 344556666666676666534 566667777778888999999995
No 269
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=54.97 E-value=75 Score=22.64 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=27.4
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+|+|+++|..+|..++..+.+. +.++.++++....
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~----~~~i~vvfiDTG~ 76 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV----DPDIPVIFLDTGY 76 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc----CCCCcEEEecCCC
Confidence 35899999999999888877663 4567777776554
No 270
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=54.95 E-value=74 Score=28.38 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHhhhcCceEEEE--EeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 80 NPEVLDILDTLSRTKGAKVVAK--VYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~--v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
++++.+.|.+++...+++++.. .+...-...|++..++..+|+| +|+|
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIv-IGTH 705 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIV-IGTH 705 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEE-Eech
Confidence 4688888888888888888865 3445778899999999999965 5655
No 271
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=54.95 E-value=78 Score=22.83 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh----cCCCEEEEeec
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED----LKLDTLVVGSR 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~----~~~dliv~g~~ 128 (164)
.+..+.+++.....|+.=...+..|+..+.+.+.... ..+|+|++-..
T Consensus 114 ~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 114 RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 3445566667777777655557789988888776643 47899999755
No 272
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=54.90 E-value=78 Score=22.84 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+....+.+.+++.|..+......+++ ....++.....++|-++++....... ...-..+.+.++|++++.
T Consensus 41 ~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~------~~~l~~~~~~~ipvV~~~ 114 (295)
T PRK10653 41 FVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAV------GNAVKMANQANIPVITLD 114 (295)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHH------HHHHHHHHHCCCCEEEEc
Confidence 3577788888888899887654333343 34455666677899888865322111 012245566788999886
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 115 ~ 115 (295)
T PRK10653 115 R 115 (295)
T ss_pred c
Confidence 4
No 273
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=54.89 E-value=49 Score=24.45 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=45.7
Q ss_pred hhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-cceeeccchhHHhcCCCccEEEEeC
Q 031202 91 SRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-KRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 91 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+.+.+.-+-.- +..-....++++.|++.+..+|+..+.+.-.. ....+......+++++++||.+-=+
T Consensus 13 A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD 82 (286)
T PRK12738 13 AQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLD 82 (286)
T ss_pred HHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 44444444332 44558899999999999999999866543221 1123456788889999999987533
No 274
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=54.57 E-value=88 Score=23.32 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=38.0
Q ss_pred CceEEEEEeeC-----ChhhHHHHHHHhcCCCEEEEeecCCc-cccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWG-----DPREKLCDAVEDLKLDTLVVGSRGLG-ALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g-----~~~~~I~~~a~~~~~dliv~g~~~~~-~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
++.+.++++.| .-..++.+.+++.++|.|++..+... ...+-..=.....+.+..++||+..-.
T Consensus 131 ~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 200 (319)
T TIGR00737 131 DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGD 200 (319)
T ss_pred CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCC
Confidence 56777766543 12456777788889999998643221 111111113455677778899887543
No 275
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=54.34 E-value=81 Score=22.83 Aligned_cols=120 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEEEecCChhhHHHHHH-HHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 6 TVGVGMDNSPNSKAALRW-AADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~-a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
+|.|+=-|...--..... +.+++...+.++.++-..+...... .+--+...+..-...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~---------------------~LGve~~~~~lg~~~ 60 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPE---------------------ALGVEEPMKYLGGKR 60 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHH---------------------hcCCCCCCcccccHH
Q ss_pred HHHHHHhhhcCc-----eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCcccc-ceeeccchhHHhcC
Q 031202 85 DILDTLSRTKGA-----KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALK-RVLLGSVSNHVVTN 148 (164)
Q Consensus 85 ~~~~~~~~~~~~-----~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~-~~~~gs~~~~v~~~ 148 (164)
+.+++.....+- -++.....++..++.+.+.... +|+|||.-...+-. -...+.....++++
T Consensus 61 e~~~k~~~a~~~~~~~~~fk~~~~~~di~~e~~~e~~~~--~LLvmGkie~~GeGC~Cp~~allR~~l~~ 128 (255)
T COG3640 61 ELLKKRTGAEPGGPPGEMFKENPLVSDLPDEYLVENGDI--DLLVMGKIEEGGEGCACPMNALLRRLLRH 128 (255)
T ss_pred HHHHHHhccCCCCCcccccccCcchhhhhHHHhhhcCCc--cEEEeccccCCCCcccchHHHHHHHHHHH
No 276
>PRK00861 putative lipid kinase; Reviewed
Probab=54.05 E-value=86 Score=23.04 Aligned_cols=68 Identities=7% Similarity=0.196 Sum_probs=36.0
Q ss_pred HHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 85 DILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.+...++. +.+++...... .-..++.+.+...++|+||+..-. +.+ ..++..++ ..+.|+-++|-.+
T Consensus 23 ~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGD-GTl-----~evv~~l~-~~~~~lgviP~GT 91 (300)
T PRK00861 23 ALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGD-GTL-----SAVAGALI-GTDIPLGIIPRGT 91 (300)
T ss_pred HHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECCh-HHH-----HHHHHHHh-cCCCcEEEEcCCc
Confidence 344444443 35555544333 345667766666777877664322 222 22344443 3467888888654
No 277
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=53.96 E-value=77 Score=22.49 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=52.7
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++++.++|.++|-.|+-+|.+. ...+.++++.+...... +.+ .--.+
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~------~~H-----------------------~~~~~ 48 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESY------MFH-----------------------GVNAH 48 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcc------ccc-----------------------ccCHH
Confidence 4678999999999988887774 33455666665532110 000 01123
Q ss_pred HHHHHhhhcCceEEEEEe---eCChhhHHHHHHHhcCCCEEEEeec
Q 031202 86 ILDTLSRTKGAKVVAKVY---WGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~---~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+..+++..|++...... .++..+.+.+..++.+++.+|-|.-
T Consensus 49 ~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI 94 (223)
T TIGR00290 49 LTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAI 94 (223)
T ss_pred HHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCc
Confidence 444555556776533212 2345666666677778888888854
No 278
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=53.92 E-value=11 Score=22.49 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=37.0
Q ss_pred HHHHHhhhcCceEEEEE-eeCCh-h-h---HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 86 ILDTLSRTKGAKVVAKV-YWGDP-R-E---KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v-~~g~~-~-~---~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
-..+++++.|+++...+ ..+.. . + .+.+..++.++|++|.-..+...... --|....+++-..++|.+
T Consensus 21 gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 21 GTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcCCCCc
Confidence 34456667899854432 23333 2 3 39999999999988887654432211 124445555555666653
No 279
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=53.83 E-value=84 Score=22.87 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhh--cCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRT--KGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
......+.+.+.. .|+.+......+++. ..+++.+...++|-||+........ .... +-+....+||+++
T Consensus 15 ~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~-----~~~~-~~~~~~giPvV~~ 88 (303)
T cd01539 15 SLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAA-----QTVI-NKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhH-----HHHH-HHHHHCCCCEEEe
Confidence 4566677777777 555555432223443 3566667788999988864322111 1122 3356678999988
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 89 ~~ 90 (303)
T cd01539 89 NR 90 (303)
T ss_pred CC
Confidence 53
No 280
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=53.76 E-value=93 Score=23.34 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=39.2
Q ss_pred CceEEEEEeeC-C----hhhHHHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWG-D----PREKLCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g-~----~~~~I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
++.+..+++.| + -..++.+.+++.++|.|.+..+.+.. ..+...=....++.++.++||+..-+
T Consensus 133 d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 133 DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC
Confidence 56677767665 2 23467777888999999886543321 11111113455677778899887643
No 281
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=53.67 E-value=62 Score=21.33 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEe--eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVY--WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
...+++.+.+++.+.+.|++++...- +|...+.|-+.. .++|-||+..-..+... --....+....+|++=
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~--~~~dgiIINpga~THtS-----iAl~DAl~~~~~P~VE 98 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEAR--GDVAGIVINPGAYTHTS-----VAIRDALAALELPVIE 98 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh--hcCCEEEEcchHHhhhH-----HHHHHHHHcCCCCEEE
Confidence 34567778888888888888886432 234444444432 24699999755433211 1234566778899887
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 99 VH 100 (146)
T PRK13015 99 VH 100 (146)
T ss_pred EE
Confidence 75
No 282
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=53.55 E-value=91 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=28.9
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
.|+......+....+ +|.||+.+... .....+.+++.+||+=
T Consensus 81 kgEsi~Dta~vls~y-~D~iviR~~~~---------~~~~~~a~~s~vPVIN 122 (301)
T TIGR00670 81 KGETLADTIKTLSGY-SDAIVIRHPLE---------GAARLAAEVSEVPVIN 122 (301)
T ss_pred CCcCHHHHHHHHHHh-CCEEEEECCch---------hHHHHHHhhCCCCEEe
Confidence 355566666666666 89999976532 2466678888999763
No 283
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=53.10 E-value=59 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=36.5
Q ss_pred hhHHHHHHHhcCCCEEEEeec-CCccccceeeccchhHHhcCCCccEEEE
Q 031202 108 REKLCDAVEDLKLDTLVVGSR-GLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~-~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.+.|++++++.++|++|-|.- +.+++ +..-|.++..|-.+..+|++.-
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrY-G~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 65 VARVLEMLKDKEPDIFIAGPAFNAGRY-GVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccH-HHHHHHHHHHHHHhhCCCeEEE
Confidence 367899999999999999953 33333 2345778888888899998864
No 284
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=52.91 E-value=66 Score=25.30 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=42.7
Q ss_pred hhHHHHHHHHhhhcCceEEEE-EeeC--ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAK-VYWG--DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-v~~g--~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
++..+++.+..+..++++... ...+ +-.....+.++..++|.||+-....+. ++..-..++..++||+++-
T Consensus 22 ~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~------~~~~~~~~~~~~~Pvll~a 95 (452)
T cd00578 22 EEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP------AKMWIAGLSELRKPVLLLA 95 (452)
T ss_pred HHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc------HHHHHHHHHhcCCCEEEEe
Confidence 344444555555445554432 1111 224556677777899999986554332 2234445677899999996
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
.+.
T Consensus 96 ~~~ 98 (452)
T cd00578 96 TQF 98 (452)
T ss_pred CCC
Confidence 543
No 285
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=52.78 E-value=35 Score=21.10 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=29.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.+++.+..+..+...++ +++.|+..|+++..+.-.+.
T Consensus 46 ~~d~~I~iS~sG~t~e~~~-~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQSGETADTLA-ALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCcEEEEEeCCcCCHHHHH-HHHHHHHcCCeEEEEECCCC
Confidence 4678999999988887666 57778888887776665543
No 286
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=52.70 E-value=56 Score=20.52 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=41.2
Q ss_pred HHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCC-CEEEEeecCCccccceeeccchhHHhcCC---CccEEEEeC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKL-DTLVVGSRGLGALKRVLLGSVSNHVVTNS---SCPVTVVKG 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~-dliv~g~~~~~~~~~~~~gs~~~~v~~~~---~~pVliv~~ 158 (164)
.+.+.+.+...+..++...... +..+.+.......+. |.||+..-. +.+ ..+...++... ..|+-++|-
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGD-GTl-----~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGD-GTL-----NEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESH-HHH-----HHHHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCc-cHH-----HHHHHHHhhcCCCccceEEEecC
Confidence 3667777777788877765544 778888876566655 677665332 111 22333343333 258999885
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
.+
T Consensus 91 GT 92 (130)
T PF00781_consen 91 GT 92 (130)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 287
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=52.57 E-value=39 Score=23.57 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNAD 46 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~ 46 (164)
....|++++++|......+. ++..+++.+++|..+.-.+....
T Consensus 85 ~~~DvviaiS~SGeT~el~~-~~~~aK~~g~~liaiT~~~~SsL 127 (202)
T COG0794 85 TPGDVVIAISGSGETKELLN-LAPKAKRLGAKLIAITSNPDSSL 127 (202)
T ss_pred CCCCEEEEEeCCCcHHHHHH-HHHHHHHcCCcEEEEeCCCCChH
Confidence 45789999999999887666 57778999999988887776643
No 288
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=52.57 E-value=33 Score=23.75 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=32.9
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
....+++.++.|..+...+ .+++.|+..|+++..+.-.....
T Consensus 108 ~~gDvli~iS~SG~s~~v~-~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 108 HAGDVLLAISTRGNSRDIV-KAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCEEEEEeCCCCCHHHH-HHHHHHHHCCCEEEEEeCCCCCh
Confidence 3468999999998887644 57889999999988887765543
No 289
>PRK06850 hypothetical protein; Provisional
Probab=52.52 E-value=57 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=25.0
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccC-----CCeEEEEEEeCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDS-----GDLIILIHVQPP 43 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~-----~~~l~ll~v~~~ 43 (164)
.+.|+.+|.++|..++..+....... ..++++++....
T Consensus 36 P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTg 78 (507)
T PRK06850 36 PWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTL 78 (507)
T ss_pred CeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCC
Confidence 46899999999988888776543322 235666665443
No 290
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=52.41 E-value=17 Score=23.78 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=26.6
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+.+.+.++++++|.|++.-..... .. . ...-.-+++.+|.|.++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~-~~--i-~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEE-EQ--I-KRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-H-HH--H-HHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCH-HH--H-HHHHHHHHhCCCEEEEeC
Confidence 5889999999999999998654332 11 1 123446677789999887
No 291
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=52.35 E-value=46 Score=24.13 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=38.6
Q ss_pred HhhhcCceEEEEEe-eCChhhHH-HHHHHhcCCCEEEEeecCCc-cccceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 90 LSRTKGAKVVAKVY-WGDPREKL-CDAVEDLKLDTLVVGSRGLG-ALKRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 90 ~~~~~~~~~~~~v~-~g~~~~~I-~~~a~~~~~dliv~g~~~~~-~~~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
.|.+.|+.-+..+. .|-+..+. ....+++++|.||.=.+|.. ++.. =-..+....+||+++.++.-
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~e------Ki~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELE------KVKAAEALGINVIRIARPQT 234 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHH------HHHHHHHcCCcEEEEeCCCC
Confidence 34444554443333 34333222 45578899999998655543 2211 12567888999999987653
No 292
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=52.24 E-value=76 Score=21.89 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+...+++.+.+.|+++...-..+++ ....++.....++|.+|+........ . .-..+.+.++|++.+.
T Consensus 14 ~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~------~-~~~~l~~~~ip~v~~~ 86 (264)
T cd01537 14 FAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAP------T-IVKLARKAGIPVVLVD 86 (264)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcch------h-HHHHhhhcCCCEEEec
Confidence 3566777777777788877754444443 34455555556899998865432211 1 2456677889999885
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 87 ~~ 88 (264)
T cd01537 87 RD 88 (264)
T ss_pred cC
Confidence 44
No 293
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=52.10 E-value=66 Score=21.20 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhc--CCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDL--KLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~--~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
...+++.+.+++.+...|+++++. ..+-..+|++...+. ++|-||+..-..+... --....+...++|++=
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~v~~~--QSN~EGelId~I~~a~~~~dgiiINpga~THtS-----iAl~DAl~~~~~P~VE 98 (146)
T PRK05395 26 TTLADIEALLEEEAAELGVELEFF--QSNHEGELIDRIHEARDGADGIIINPGAYTHTS-----VALRDALAAVSIPVIE 98 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEE--eeCcHHHHHHHHHhcccCCcEEEECchHHHHHH-----HHHHHHHHcCCCCEEE
Confidence 345677778888888889888864 333333444443332 5799999755443211 1234566777889887
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 99 VH 100 (146)
T PRK05395 99 VH 100 (146)
T ss_pred Ee
Confidence 75
No 294
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=51.87 E-value=1.2e+02 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=15.8
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.-...+++.+.+.+.+...+|+.+
T Consensus 243 ~~~~~ll~~a~~~g~~~~wigs~~ 266 (458)
T cd06375 243 EDARELLAAAKRLNASFTWVASDG 266 (458)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecc
Confidence 445667777777777766776554
No 295
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=51.77 E-value=66 Score=24.62 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+++.+++|+++|+..+.+|+++|-...-
T Consensus 164 ~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl 193 (352)
T TIGR02089 164 KGVERIMRFAFELAQKRRKHLTSATKSNGI 193 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCcch
Confidence 567888999999998776678988876553
No 296
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=51.71 E-value=95 Score=22.89 Aligned_cols=66 Identities=12% Similarity=-0.031 Sum_probs=40.7
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGNP 160 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~~ 160 (164)
.+.+-..+...+..+. +.+.+++.++|.+++..........--+-.--..|+..+ +.||+++.-+.
T Consensus 69 ~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~ 137 (294)
T TIGR02313 69 RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPG 137 (294)
T ss_pred CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCch
Confidence 3455443433355444 567899999999999876443322111223345578888 79999996543
No 297
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=51.69 E-value=1e+02 Score=23.12 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=39.3
Q ss_pred CceEEEEEeeC-C---hhhHHHHHHHhcCCCEEEEeecCCccccceeec-----cchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWG-D---PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLG-----SVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g-~---~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~g-----s~~~~v~~~~~~pVliv~~ 158 (164)
++.+..+++.| + ...++.+.+++.++|.|.+..+.+.. .+.| .....+-++.++||+..-+
T Consensus 133 ~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~---~y~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 133 HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED---GYRAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc---CCCCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 36666666655 2 34678888999999999996543321 1122 2356677777899877543
No 298
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=51.68 E-value=25 Score=27.38 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=8.3
Q ss_pred CCccEEEEeC
Q 031202 149 SSCPVTVVKG 158 (164)
Q Consensus 149 ~~~pVliv~~ 158 (164)
..+||++++.
T Consensus 109 ~~iPVf~I~G 118 (405)
T TIGR00583 109 VAIPVFSIHG 118 (405)
T ss_pred CCCCEEEEcC
Confidence 5799999975
No 299
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=51.53 E-value=35 Score=23.25 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=25.4
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+|++++.|+..+.++.+..-.|.+ .+.+++++-
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~-~g~~V~vv~ 33 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE-AGVEVHLVI 33 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 589999999999999998777754 466655543
No 300
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=51.50 E-value=67 Score=25.23 Aligned_cols=62 Identities=19% Similarity=0.332 Sum_probs=43.0
Q ss_pred cCceEEEEEeeCC-h--------hhHHHHHHHhcCCCEEEEeec-CCccccceeeccchhHHhcCCCccEEEE
Q 031202 94 KGAKVVAKVYWGD-P--------REKLCDAVEDLKLDTLVVGSR-GLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 94 ~~~~~~~~v~~g~-~--------~~~I~~~a~~~~~dliv~g~~-~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.+.++...+..|| . .+.|++++++.++|++|-|.- +.+++ +..-|.++..|-.+..+|++.-
T Consensus 42 ~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrY-G~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 42 EDAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRY-GMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred CCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccH-HHHHHHHHHHHHHhhCCCeEEE
Confidence 3455554455542 2 367899999999999999953 33333 2345778888888899998864
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.45 E-value=1.2e+02 Score=23.82 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL 133 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~ 133 (164)
+.+++..++...++.+...-...+..++|.......++|+|++-+.|++..
T Consensus 249 AveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~ 299 (407)
T PRK12726 249 AVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL 299 (407)
T ss_pred HHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc
Confidence 455666677767776653111112233333333335679999988877654
No 302
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=51.36 E-value=96 Score=22.80 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=37.7
Q ss_pred HhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC---CccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 90 LSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG---LGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~---~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
.+...|++++..+ ++ ++-...++ +|++++|..| .+++-..+..-...-++++.+.|+.++-...
T Consensus 176 ~L~~~~IPvtlvl--DS---aVgyvMe~--vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~ 242 (313)
T KOG1466|consen 176 ELKKLGIPVTLVL--DS---AVGYVMER--VDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESH 242 (313)
T ss_pred HHHhcCCCeEEEe--hh---hHHHHHhh--ccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeecc
Confidence 3445577777532 22 22223333 4999999876 3344433333345556778889999986543
No 303
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=51.31 E-value=43 Score=18.80 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=23.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLII 36 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ 36 (164)
++|.++.|.+...+.+...+...+...+..+.
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~ 75 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVR 75 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 79999999999887777777666655544443
No 304
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=51.13 E-value=97 Score=22.82 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=46.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEe-eC-------------ChhhHHHHHHHhcCCCEEEE--eecCCcc-ccceeeccchhH
Q 031202 82 EVLDILDTLSRTKGAKVVAKVY-WG-------------DPREKLCDAVEDLKLDTLVV--GSRGLGA-LKRVLLGSVSNH 144 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~-~g-------------~~~~~I~~~a~~~~~dliv~--g~~~~~~-~~~~~~gs~~~~ 144 (164)
+...++.+.++..|+.++.++. -| .-.++..+++++.++|.|-+ |+-.... ....+--.....
T Consensus 115 ~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~ 194 (281)
T PRK06806 115 QKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQE 194 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHH
Confidence 4455677788888887776521 22 12355667777789999999 7542221 111122234567
Q ss_pred HhcCCCccEEEEe
Q 031202 145 VVTNSSCPVTVVK 157 (164)
Q Consensus 145 v~~~~~~pVliv~ 157 (164)
+....++|+...-
T Consensus 195 i~~~~~iPlV~hG 207 (281)
T PRK06806 195 INDVVHIPLVLHG 207 (281)
T ss_pred HHHhcCCCEEEEC
Confidence 7777889987764
No 305
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=50.91 E-value=60 Score=23.17 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+.+.+.+...|.++...-.. +...+.. .++|.|+++.-
T Consensus 49 y~~~~~~af~~lG~~v~~l~~~----~d~~~~l--~~ad~I~v~GG 88 (233)
T PRK05282 49 YTAKVAEALAPLGIEVTGIHRV----ADPVAAI--ENAEAIFVGGG 88 (233)
T ss_pred HHHHHHHHHHHCCCEEEEeccc----hhhHHHH--hcCCEEEECCc
Confidence 3445566666667765533211 2222223 34477777644
No 306
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=50.85 E-value=80 Score=22.32 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee--CCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW--GDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~--g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
....+.+.+.+++.|..+...... +++ ....++.....++|-||+......... ... ..+...++||+.+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~~ 88 (275)
T cd06320 15 RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLV-----PAV-ERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhH-----HHH-HHHHHCCCeEEEE
Confidence 466677778888888877754321 243 234555666678898888643222111 112 2345678899888
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
..
T Consensus 89 ~~ 90 (275)
T cd06320 89 ND 90 (275)
T ss_pred CC
Confidence 54
No 307
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=50.82 E-value=82 Score=21.85 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=27.6
Q ss_pred HHHHhhhcCceEEEE--Eee---CChhhHHHHHHHhcCCCEEEEeec
Q 031202 87 LDTLSRTKGAKVVAK--VYW---GDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~--v~~---g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+.+++.+.|+++... ... ....+++.+..+..++|++|+...
T Consensus 43 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 43 GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHh
Confidence 355677778887541 111 123567888888999999988544
No 308
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.50 E-value=43 Score=18.95 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-+.+++.++.+.++....+ +++.++..++++..+.
T Consensus 47 ~~d~~i~iS~sg~t~~~~~-~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSGRTEELLA-ALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHcCCeEEEEe
Confidence 4678999998888877555 5677777888877664
No 309
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.28 E-value=46 Score=20.67 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=29.7
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+.+++.++.|..+...++ +++.|+..|+++..+.-....
T Consensus 47 ~~dl~I~iS~SG~t~~~~~-~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 47 EKSVVILASHSGNTKETVA-AAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHcCCeEEEEECCCCC
Confidence 3578999999988877666 677788888877776554443
No 310
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=50.28 E-value=13 Score=21.53 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=33.2
Q ss_pred eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 97 KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 97 ~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+...+.-|+.+.+=.+ ...++|++|++........... ...........++.+++.+..
T Consensus 17 ~i~~i~LfGS~arg~~~--~~SDiDl~vi~~~~~~~~~~~~-~~~~~~~~~~~~vDi~~~~~~ 76 (93)
T cd05403 17 GVEKVYLFGSYARGDAR--PDSDIDLLVIFDDPLDPLELAR-LLEELELLLGRPVDLVVLNAL 76 (93)
T ss_pred CccEEEEEeeeecCCCC--CCCCeeEEEEeCCCCCHHHHHH-HHHHHHHHhCCcEEEEECCcc
Confidence 45555777877765544 5678899999877554332111 111222334445555555443
No 311
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=50.22 E-value=39 Score=22.60 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=31.2
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-....
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~-~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLK-ALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCCC
Confidence 4689999999999988777 567788889888777655443
No 312
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.16 E-value=92 Score=22.26 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+.+.+.+.+++.|..+......++.. ..+++.....++|-||+-........ ..-..+...++||+++-
T Consensus 15 ~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~------~~~~~~~~~~iPvV~~d 88 (280)
T cd06315 15 ILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ------AELELAQKAGIPVVGWH 88 (280)
T ss_pred HHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH------HHHHHHHHCCCCEEEec
Confidence 35677788888888887765433333433 46777888899999999643211111 11134556789999985
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 89 ~ 89 (280)
T cd06315 89 A 89 (280)
T ss_pred C
Confidence 4
No 313
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=50.15 E-value=1.1e+02 Score=23.36 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=63.1
Q ss_pred cEEEEEecCC--hhhHHHHHHHHHHhcc---CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCC
Q 031202 5 RTVGVGMDNS--PNSKAALRWAADNLID---SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTS 79 (164)
Q Consensus 5 ~~ILv~~d~s--~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
++.||.+-+. .+-..++++|.+|++. ...++.++--..-..+.+.. .|-..+......... .
T Consensus 52 ~rllvIvGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~-gwkGl~~DP~ldgs~------------~ 118 (356)
T PRK12822 52 PRLLVIIGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRK-GWKGLIFDPDLDGSN------------D 118 (356)
T ss_pred CCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCC-CccccccCCCCCCCc------------c
Confidence 3556655432 4456788888888664 44555555444433333321 122211111111111 1
Q ss_pred ChhHHHHH---HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 80 NPEVLDIL---DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.++=+..+ .....+.|+.+.+++..-...+-+.+.. +..-||++.-.. ..-..++...++||.+=
T Consensus 119 i~~GL~i~R~ll~~~~~~GlPvatE~ld~~~~qy~~Dli-----sw~aIGARt~es-------q~hrelaSgls~PVgfK 186 (356)
T PRK12822 119 IEKGLRLARQLLLSINTLGLATATEFLDTTSFPYIADLI-----CWGAIGARTTES-------QVHRQLASALPCPVGFK 186 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeecccccHHHHHHHH-----HhhhhccchhcC-------HHHHHHHhCCCCceEec
Confidence 12323333 3336677999998877654344432221 333677664221 12344677788998874
Q ss_pred e
Q 031202 157 K 157 (164)
Q Consensus 157 ~ 157 (164)
+
T Consensus 187 n 187 (356)
T PRK12822 187 N 187 (356)
T ss_pred C
Confidence 3
No 314
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=50.01 E-value=31 Score=27.74 Aligned_cols=23 Identities=4% Similarity=-0.075 Sum_probs=14.8
Q ss_pred HHHHHHhccCCCeEEEEEEeCCC
Q 031202 22 RWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 22 ~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
-=|.+.+.....-+.++|.-..-
T Consensus 14 ~Ga~~~a~~i~~~~~i~H~p~Gc 36 (513)
T CHL00076 14 IGTLRVASSFKNVHAIMHAPLGD 36 (513)
T ss_pred hhHHHHHHhcCCcEEEeeCCCCc
Confidence 34566666677777777765544
No 315
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=49.97 E-value=37 Score=21.23 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=27.7
Q ss_pred cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 118 LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 118 ~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+++.||+|+...+.+. ++.-+...+++-.|-|...|-
T Consensus 60 e~~E~ivvGTG~~G~l~---l~~ea~e~~r~k~~~vi~~pT 97 (121)
T COG1504 60 EGPEVIVVGTGQSGMLE---LSEEAREFFRKKGCEVIELPT 97 (121)
T ss_pred cCCcEEEEecCceeEEE---eCHHHHHHHHhcCCeEEEeCC
Confidence 66789999876655432 566777888888888888774
No 316
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=49.95 E-value=30 Score=25.31 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=32.7
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
..+.++|+++.+.+....++ +++.|+..|+++..+.-....+
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~-~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVE-AAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHH-HHHHHHHCCCcEEEEcCCCCCc
Confidence 45789999999999987776 5777888998887776654443
No 317
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=49.92 E-value=47 Score=18.78 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
..+++.|..++. .+.++++++-.+.... .....+.+.+.+.+++.|++
T Consensus 9 ~ig~E~A~~l~~-~g~~vtli~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 9 FIGIELAEALAE-LGKEVTLIERSDRLLP-------------------------------GFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp HHHHHHHHHHHH-TTSEEEEEESSSSSST-------------------------------TSSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHH-hCcEEEEEeccchhhh-------------------------------hcCHHHHHHHHHHHHHCCCE
Confidence 346787777755 7789999887766531 23456777778888888887
Q ss_pred EEE
Q 031202 98 VVA 100 (164)
Q Consensus 98 ~~~ 100 (164)
+.+
T Consensus 57 v~~ 59 (80)
T PF00070_consen 57 VHT 59 (80)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 318
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.92 E-value=24 Score=25.34 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=12.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCCh
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDP 107 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~ 107 (164)
..++++.+.+.+.+ ++..+..||.
T Consensus 26 ~~l~~l~~~~~~~~--~D~lli~GDi 49 (253)
T TIGR00619 26 AFLDDLLEFAKAEQ--IDALLVAGDV 49 (253)
T ss_pred HHHHHHHHHHHHcC--CCEEEECCcc
Confidence 34555555555544 4444555554
No 319
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=49.85 E-value=25 Score=25.35 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCCCC
Q 031202 112 CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNPVS 162 (164)
Q Consensus 112 ~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~~~ 162 (164)
....+++++|.||.=.+|..+....+- .++...+||++++++..+
T Consensus 187 ~al~~~~~i~~lVtK~SG~~g~~eKi~------AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 187 RALFRQYGIDVLVTKESGGSGFDEKIE------AARELGIPVIVIKRPPEP 231 (249)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHHHHH------HHHHcCCeEEEEeCCCCC
No 320
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=49.62 E-value=58 Score=23.40 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=32.5
Q ss_pred CceEEEEEeeC--C--hhhHHHHHHHhcCCCEEEEeec-CCccccceeeccchhHHhcCCCccEEE
Q 031202 95 GAKVVAKVYWG--D--PREKLCDAVEDLKLDTLVVGSR-GLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 95 ~~~~~~~v~~g--~--~~~~I~~~a~~~~~dliv~g~~-~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
++++.. ...| + -.++|++.++..++|+|++|-. ++. + .+ ..+.....+.+|++
T Consensus 130 ~l~i~g-~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQ--E-~~----~~~~~~~~~~~v~~ 187 (243)
T PRK03692 130 NVNIVG-SQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQ--E-IF----MRDCRLVYPDALYM 187 (243)
T ss_pred CCEEEE-EeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHH--H-HH----HHHHHHhCCCCEEE
Confidence 666543 2334 2 2467999999999999999843 222 1 11 33455555667655
No 321
>PF13362 Toprim_3: Toprim domain
Probab=49.59 E-value=53 Score=19.37 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCcEEEEEecCChh--hHHHHHHHHHHhccCCCeEEEEEE
Q 031202 3 KARTVGVGMDNSPN--SKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~--s~~al~~a~~la~~~~~~l~ll~v 40 (164)
..++|+|+.|.+.. .+.+...+.+.+...+..+.++..
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 35789999999888 777777777776666766666554
No 322
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=49.51 E-value=72 Score=20.87 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEe--eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVY--WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
...+++.+.+.+.+.+.|++++...- +|+..+.|-+... ++|-||+..-..+... --....+....+|++=
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~--~~dgiIINpga~THtS-----vAi~DAl~~~~~P~VE 96 (140)
T cd00466 24 TTLADIEALLRELAAELGVEVEFFQSNHEGELIDWIHEARD--GADGIIINPGAYTHTS-----IALRDALAAVSIPVIE 96 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhc--cCcEEEEcchHHHHHH-----HHHHHHHHcCCCCEEE
Confidence 34567778888888888988886432 2344444444322 5799999755433211 1234566777888887
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 97 VH 98 (140)
T cd00466 97 VH 98 (140)
T ss_pred Ee
Confidence 75
No 323
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=49.43 E-value=41 Score=26.01 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=26.2
Q ss_pred HHHHhcCCCEEEEeecCCccc-cc---eeeccchhHHhcCCCccEEEE
Q 031202 113 DAVEDLKLDTLVVGSRGLGAL-KR---VLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 113 ~~a~~~~~dliv~g~~~~~~~-~~---~~~gs~~~~v~~~~~~pVliv 156 (164)
+..+.+++|+|.+-..+..+- .. --+..+++.|+..+++|++|.
T Consensus 147 ~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~ 194 (389)
T TIGR00381 147 KCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIG 194 (389)
T ss_pred HHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEe
Confidence 334677788888865433221 00 013456777778888888776
No 324
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.37 E-value=54 Score=24.22 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=44.8
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEE
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv 156 (164)
.+.+.+.-+-.- +..-....++++.|++.+.-+|+..+.+.-...+ -.+......+++++.+||.+-
T Consensus 12 ~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 12 RIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred HHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 344445444333 3334788999999999999999987654332221 234557778889999999874
No 325
>PLN02342 ornithine carbamoyltransferase
Probab=49.35 E-value=1.2e+02 Score=23.24 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=29.2
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
.|+......+....+ +|.||+.+.... ..+.+.+.+.+||+=
T Consensus 126 kGESl~DTarvLs~y-~D~IviR~~~~~---------~~~~la~~~~vPVIN 167 (348)
T PLN02342 126 KREETRDIARVLSRY-NDIIMARVFAHQ---------DVLDLAEYSSVPVIN 167 (348)
T ss_pred CCcCHHHHHHHHHHh-CCEEEEeCCChH---------HHHHHHHhCCCCEEE
Confidence 455566666666677 899999765322 356678888899864
No 326
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=49.25 E-value=64 Score=23.75 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=44.9
Q ss_pred hhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-c-ceeeccchhHHhcCCC-ccEEEEeC
Q 031202 91 SRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-K-RVLLGSVSNHVVTNSS-CPVTVVKG 158 (164)
Q Consensus 91 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~-~~~~gs~~~~v~~~~~-~pVliv~~ 158 (164)
+.+.+.-+-.- +..-+..+++++.|++.+..+|+..+.+.... . -..+......++++++ +||.+--+
T Consensus 11 A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlD 82 (282)
T TIGR01859 11 AKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLD 82 (282)
T ss_pred HHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECC
Confidence 34444443333 44448899999999999999999876644322 1 1124556777888888 89887543
No 327
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=49.24 E-value=89 Score=21.81 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
....+.+.+.+.+++.|..+.......++ ...+++.....++|-|++....... .....+ ....||+++
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~--------~~~~~~-~~~ipvv~~ 83 (267)
T cd06284 13 FFSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPP--------TALTAL-AKLPPIVQA 83 (267)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCH--------HHHHHH-hcCCCEEEE
Confidence 34677788888888888877654333444 4466677888899988884322110 011222 337898887
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
..
T Consensus 84 ~~ 85 (267)
T cd06284 84 CE 85 (267)
T ss_pred ec
Confidence 53
No 328
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=49.23 E-value=1.2e+02 Score=23.38 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccc--cceeeccchhHHhcCCCccEEE
Q 031202 89 TLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGAL--KRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~--~~~~~gs~~~~v~~~~~~pVli 155 (164)
+.....++.+. ++.+ ....++.+.+.+.++|+|++..+..+.. ...-......++.++.++||+.
T Consensus 126 ~~vr~a~Vtvk--iRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 126 AEVRDSGVITA--VRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHhcceEEE--EecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 33444454444 4434 3577899999999999999964321100 0000011234567777899985
No 329
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=49.12 E-value=90 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhccCCCeEEEEE
Q 031202 16 NSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 16 ~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
....+.++.+.++...+.++.++-
T Consensus 13 ~~~~i~~~~~~~ag~~~~~i~~ip 36 (217)
T cd03145 13 DNRAILQRFVARAGGAGARIVVIP 36 (217)
T ss_pred CHHHHHHHHHHHcCCCCCcEEEEe
Confidence 566788888888775566664443
No 330
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=49.11 E-value=40 Score=22.56 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=31.2
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
.+.++|.++.+......++ +++.|+..|+++.++.-.....
T Consensus 72 ~~Dv~I~iS~sG~t~~~i~-~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVT-VAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CCCEEEEEeCCCCcHHHHH-HHHHHHHCCCeEEEEECCCCCc
Confidence 4689999999988887776 5666888999887776654443
No 331
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.05 E-value=1.2e+02 Score=23.15 Aligned_cols=115 Identities=8% Similarity=0.070 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCceE
Q 031202 19 AALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAKV 98 (164)
Q Consensus 19 ~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
....+..+-++..|+...-+++...+.... .. +......+.++.+.|+..|+.+
T Consensus 106 ~~~~~sve~a~~~GAdAVk~lv~~~~d~~~----------------------~~----~~~~~~~l~rv~~ec~~~giPl 159 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLLLYYRPDEDD----------------------AI----NDRKHAFVERVGAECRANDIPF 159 (340)
T ss_pred ccccccHHHHHHcCCCEEEEEEEeCCCcch----------------------HH----HHHHHHHHHHHHHHHHHcCCce
Confidence 345555556667777666666665542110 00 0123456888889999999987
Q ss_pred EEEE-ee--C-C----------hhhHHHHH---HH--hcCCCEEEEeecCCcc-cccee-----ec-----cchhHHhcC
Q 031202 99 VAKV-YW--G-D----------PREKLCDA---VE--DLKLDTLVVGSRGLGA-LKRVL-----LG-----SVSNHVVTN 148 (164)
Q Consensus 99 ~~~v-~~--g-~----------~~~~I~~~---a~--~~~~dliv~g~~~~~~-~~~~~-----~g-----s~~~~v~~~ 148 (164)
-.++ .. | + -.+.|.+. +. +.++|++=+.-..... .+++- .. ..-..+...
T Consensus 160 llE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a 239 (340)
T PRK12858 160 FLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDA 239 (340)
T ss_pred EEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhh
Confidence 6652 11 1 1 11223332 33 5889988886543321 11100 00 235567778
Q ss_pred CCccEEEEeCC
Q 031202 149 SSCPVTVVKGN 159 (164)
Q Consensus 149 ~~~pVliv~~~ 159 (164)
+++|+++.-..
T Consensus 240 ~~~P~vvlsgG 250 (340)
T PRK12858 240 TDLPFIFLSAG 250 (340)
T ss_pred CCCCEEEECCC
Confidence 99999997543
No 332
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=49.01 E-value=1.2e+02 Score=23.18 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=39.7
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC--cc-ccceeecc-chhHHhcCCCccEEEEeCCC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL--GA-LKRVLLGS-VSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~--~~-~~~~~~gs-~~~~v~~~~~~pVliv~~~~ 160 (164)
...+.+.|+++... ..+ .+-......++|.+++|...= ++ .... .|+ ...-++++..+|++++-+..
T Consensus 199 a~eL~~~GI~vtlI--~Ds---a~~~~M~~~~vd~VivGAd~I~~nG~v~Nk-iGT~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 199 AWELYQAGIDVTVI--TDN---MAAHLMQTGKIDAVIVGADRIAANGDVANK-IGTYQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred HHHHHHCCCCEEEE--ccc---HHHHHhcccCCCEEEEcccEEecCCCEeeh-hhHHHHHHHHHHhCCCEEEecccc
Confidence 44455668887743 333 334455556789999998642 11 2222 333 33445688889999985543
No 333
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=48.89 E-value=26 Score=25.40 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=38.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNPVS 162 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~~~ 162 (164)
--.+++.++.+++++|++|=.+|+... -...++-.+.+...+|.+-+.++...
T Consensus 53 l~~e~l~~~l~e~~i~llIDATHPyAa----~iS~Na~~aake~gipy~r~eRP~~~ 105 (257)
T COG2099 53 LGAEGLAAFLREEGIDLLIDATHPYAA----RISQNAARAAKETGIPYLRLERPPWA 105 (257)
T ss_pred CCHHHHHHHHHHcCCCEEEECCChHHH----HHHHHHHHHHHHhCCcEEEEECCccc
Confidence 346888888888888888888776542 24557777888888888888766543
No 334
>PRK13690 hypothetical protein; Provisional
Probab=48.68 E-value=85 Score=21.45 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcC
Q 031202 16 NSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKG 95 (164)
Q Consensus 16 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
....+++-..+.+.....++.++-+....-.. .. +-+....+..+.+.+.+.+..+..|
T Consensus 9 ~~~~~~~El~~~a~l~~g~i~VvGcSTSEV~G----------~~-----------IGt~ss~eva~~i~~~l~~~~~~~g 67 (184)
T PRK13690 9 QTRQILEELLEQANLKPGQIFVLGCSTSEVLG----------ER-----------IGTAGSLEVAEAIVEALLEVLKETG 67 (184)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEecchHhhCC----------cc-----------cCCcChHHHHHHHHHHHHHHhhhcC
Confidence 34556666666677677778777766554321 11 1112222345678888888888999
Q ss_pred ceEEEEEeeC-ChhhHHHH-HHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 96 AKVVAKVYWG-DPREKLCD-AVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 96 ~~~~~~v~~g-~~~~~I~~-~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
+...+...+. +-+=.+-+ .++.++.+.+-+-...+. .||.+.+.-++.+.||.+=
T Consensus 68 i~LA~QcCEHLNRALvvEr~~a~~~~le~V~VvP~~~A------GGs~a~~Ay~~~~dPV~VE 124 (184)
T PRK13690 68 IHLAVQGCEHLNRALVVEREVAEKYGLEIVTVVPVLHA------GGSLATAAYQHMKDPVVVE 124 (184)
T ss_pred cEEEEechhhhHHHHHHhHHHHHHcCCeEEEEecCCCC------CcHHHHHHHHhCCCCEEEE
Confidence 9988765555 44444445 577777776655333232 3677888888888888873
No 335
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=48.66 E-value=49 Score=21.55 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=31.5
Q ss_pred hhHHHHHHHhcCCCEEEEeecC-CccccceeeccchhHHhcCC-CccEEEEeC
Q 031202 108 REKLCDAVEDLKLDTLVVGSRG-LGALKRVLLGSVSNHVVTNS-SCPVTVVKG 158 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~-~~~~~~~~~gs~~~~v~~~~-~~pVliv~~ 158 (164)
-.++.++.+++++|-|||-.|. ++.+.+-..|-..+.++.-. .|+|-++.+
T Consensus 50 q~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~ 102 (138)
T PF11215_consen 50 QFTFAKLMEDYKVDKVVIKERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSP 102 (138)
T ss_pred HHHHHHHHHHcCCCEEEEEecccCCCccCCchhHHHHHHHHhcCCCcEEEECH
Confidence 3566777888888888887654 33333333344455555555 477777753
No 336
>PLN02476 O-methyltransferase
Probab=48.65 E-value=1.1e+02 Score=22.61 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHH---hcCCCEEEEeec
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVE---DLKLDTLVVGSR 128 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~---~~~~dliv~g~~ 128 (164)
...+..+.+++..+..|+.-..++..|+..+.+.+... ...+|+|++...
T Consensus 151 ~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 151 RDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 34566677777777888875556788998887776643 246899999865
No 337
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.63 E-value=93 Score=21.87 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+.......+. ...+.+...+.++|-||+...... .. -..+...++||+.+-
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--------~~-~~~l~~~~ipvV~~~ 87 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--------EY-IKEIKELGIPFVLVD 87 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--------HH-HHHHhhcCCCEEEEc
Confidence 4566667777777778776654333232 224455566778888888543211 11 223455678888775
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 88 ~ 88 (268)
T cd06277 88 H 88 (268)
T ss_pred c
Confidence 3
No 338
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=48.61 E-value=46 Score=20.64 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=30.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
-+.+++.++.+..+...++. ++.|+..++++.++.-.....
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~-~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 47 PGDVVIAISNSGETDELLNL-LPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHH-HHHHHHCCCeEEEEeCCCCCc
Confidence 35789999999888877774 555787888877777655543
No 339
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=48.59 E-value=1.2e+02 Score=22.96 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=21.8
Q ss_pred CceEEEEEeeC--C-----hhhHHHHHHHhcCCCEEEEeec
Q 031202 95 GAKVVAKVYWG--D-----PREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 95 ~~~~~~~v~~g--~-----~~~~I~~~a~~~~~dliv~g~~ 128 (164)
++.+.++++.| + ...++++.+.+.++|.|.+..+
T Consensus 133 ~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 133 SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 55666554433 1 1346677788889999998643
No 340
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=48.57 E-value=46 Score=21.82 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=31.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+.+++.++.|..+...++ +++.|+..|+++..+.-....
T Consensus 79 ~~D~~i~iS~sG~t~~~~~-~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 79 KGDVLLGISTSGNSKNVLK-AIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCCC
Confidence 4579999999988887666 677788889988888765444
No 341
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=48.57 E-value=96 Score=21.99 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=35.6
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeec
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+...+..+.+++..++.|+.-..++.. |+..+.+.+ -....+|+|+|-..
T Consensus 91 E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDliFIDad 141 (219)
T COG4122 91 ERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDLVFIDAD 141 (219)
T ss_pred eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccEEEEeCC
Confidence 344566777777788888876655666 688888887 33456799999754
No 342
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=48.57 E-value=79 Score=24.23 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=51.8
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++|+|+++|.-+|.. |+.|.+..|-+++.++...-..... ..-. -...+..
T Consensus 1 ~kV~vamSGGVDSsv----aA~LLk~~G~~V~Gv~m~~~~~~~~---------------~~~~----------c~~~~d~ 51 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSV----AAALLKEQGYDVIGVTMRNWDEEDE---------------SGKS----------CCSEEDI 51 (356)
T ss_dssp -EEEEE--SSHHHHH----HHHHHHHCT-EEEEEEEE-SS-SSS---------------HH-H----------HHHHHHH
T ss_pred CeEEEEccCCHHHHH----HHHHHHhhcccceEEEEEEeccccc---------------cCCC----------CCchhhH
Confidence 489999999988754 4556677888999999876654211 0000 0012345
Q ss_pred HHHHHHhhhcCceEEEEEe-----------------eC-C-----------hhhHHHHHHHh-cCCCEEEEeecC
Q 031202 85 DILDTLSRTKGAKVVAKVY-----------------WG-D-----------PREKLCDAVED-LKLDTLVVGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~-----------------~g-~-----------~~~~I~~~a~~-~~~dliv~g~~~ 129 (164)
+.++..|+..|+++...-. .| . -...+.+.|.+ .++|.|.-|+.-
T Consensus 52 ~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYA 126 (356)
T PF03054_consen 52 EDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYA 126 (356)
T ss_dssp HHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SE
T ss_pred HHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeE
Confidence 5566666666666544311 12 1 15789999999 999999999854
No 343
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=48.47 E-value=48 Score=25.89 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=37.4
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
-.+.|.+.++++++|-||.-..........-....-+.+.++..+|++.+-.+
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D 390 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETD 390 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcC
Confidence 57889999999999999998765554332212223455666689999999543
No 344
>PRK08417 dihydroorotase; Provisional
Probab=47.98 E-value=57 Score=25.03 Aligned_cols=28 Identities=4% Similarity=-0.028 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
..++..++.+|+..+++++++|+.....
T Consensus 181 ~~~v~~~~~la~~~~~~lhi~hvS~~~~ 208 (386)
T PRK08417 181 TKEVAKMKELAKFYKNKVLFDTLALPRS 208 (386)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCHHH
Confidence 4578889999999999999999987653
No 345
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=47.78 E-value=51 Score=19.48 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
-+.+++.+...|+++..+.....-.+..+..-.-..+|++++....
T Consensus 3 AeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 3 AEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 3566777888898888776544322222222222334888887653
No 346
>PRK13794 hypothetical protein; Provisional
Probab=47.75 E-value=1.5e+02 Score=23.84 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=27.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+++|+++|..+|..++..+.+.. +.++.++++....
T Consensus 248 ~~v~vs~SGGKDS~v~L~L~~~~~---~~~~~vvfiDTG~ 284 (479)
T PRK13794 248 KPVTVAYSGGKDSLATLLLALKAL---GINFPVLFNDTGL 284 (479)
T ss_pred CCEEEEecchHHHHHHHHHHHHHh---CCCeEEEEEECCC
Confidence 478999999999987777665543 5568888886554
No 347
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=47.70 E-value=98 Score=21.87 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=40.7
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++++.++|.++|-.|+-.|.+- ..-..+++..+...... +.+.. -.+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~------~~H~~-----------------------~~~ 48 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSY------MFHGV-----------------------NIE 48 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-S------SS-ST-----------------------TGT
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcc------ccccc-----------------------CHH
Confidence 5677799999998888777653 22334555554332110 00000 122
Q ss_pred HHHHHhhhcCceEEEEEee---CChhhHHHHHHHhcCCCEEEEee
Q 031202 86 ILDTLSRTKGAKVVAKVYW---GDPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~---g~~~~~I~~~a~~~~~dliv~g~ 127 (164)
.+..+++..|++....-.. .+..+.+.+..++.+++.+|-|.
T Consensus 49 ~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~Gd 93 (218)
T PF01902_consen 49 LIEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGD 93 (218)
T ss_dssp CHHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--T
T ss_pred HHHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECc
Confidence 3333444446654433222 34556666666777777777774
No 348
>PRK06849 hypothetical protein; Provisional
Probab=47.67 E-value=88 Score=23.95 Aligned_cols=37 Identities=30% Similarity=0.269 Sum_probs=23.0
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
|+..++|||.-.+.. .++..+-.+.+ .|.+++++...
T Consensus 1 ~~~~~~VLI~G~~~~---~~l~iar~l~~-~G~~Vi~~d~~ 37 (389)
T PRK06849 1 MNTKKTVLITGARAP---AALELARLFHN-AGHTVILADSL 37 (389)
T ss_pred CCCCCEEEEeCCCcH---HHHHHHHHHHH-CCCEEEEEeCC
Confidence 677788888754443 34555555544 47777777543
No 349
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.53 E-value=41 Score=20.84 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=26.8
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-+.+++.++.|..+...++ +++.|+..++++..+.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~-~~~~a~~~g~~iI~IT 77 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLS-AVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHCCCEEEEEe
Confidence 3578999999988887776 5667787888776665
No 350
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=47.40 E-value=97 Score=23.78 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=47.1
Q ss_pred HHhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-cc----e------------eeccchhHHhcCCC
Q 031202 89 TLSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-KR----V------------LLGSVSNHVVTNSS 150 (164)
Q Consensus 89 ~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~~----~------------~~gs~~~~v~~~~~ 150 (164)
+.+.+.+.-+-.- +..-....++++.|++.+..+|+..+.+.-.. .+ . .+......++++++
T Consensus 20 ~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~ 99 (357)
T TIGR01520 20 QYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYG 99 (357)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCC
Confidence 3455555554443 43448899999999999999999886654221 11 0 14456778899999
Q ss_pred ccEEEEeC
Q 031202 151 CPVTVVKG 158 (164)
Q Consensus 151 ~pVliv~~ 158 (164)
+||.+-=+
T Consensus 100 VPValHLD 107 (357)
T TIGR01520 100 VPVVLHTD 107 (357)
T ss_pred CCEEEECC
Confidence 99987543
No 351
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=47.38 E-value=1.4e+02 Score=23.59 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=30.1
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.|+..+...+....+ +|+||+.+...+ ..+.+.+++.+||+=-
T Consensus 168 kGESi~DTarvLs~y-~D~IviR~~~~~---------~~~e~A~~s~vPVINA 210 (429)
T PRK11891 168 KGESIYDTSRVMSGY-VDALVIRHPEQG---------SVAEFARATNLPVING 210 (429)
T ss_pred CCCCHHHHHHHHHHh-CCEEEEeCCchh---------HHHHHHHhCCCCEEEC
Confidence 356666666666677 899999754322 5677888899998743
No 352
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=47.36 E-value=1.1e+02 Score=22.39 Aligned_cols=64 Identities=27% Similarity=0.331 Sum_probs=39.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
++.+.+.....|+.+-+++..-.-.+.+ .+. +|++-+|++.-... .-...+-++++||.+=+..
T Consensus 77 L~~l~~v~~~~glpv~tEv~~~~~~~~~----~d~-vd~lqIgAr~~~n~-------~ll~~as~~~~pV~~K~g~ 140 (270)
T PF00793_consen 77 LDILSEVKEGLGLPVATEVLDPEQAEYV----ADL-VDWLQIGARLMENQ-------DLLEAASGTGKPVGFKNGT 140 (270)
T ss_dssp HHHHHHHHHHHT-EEEEEESSGGGHHHH----HTT-ESEEEE-GGGTTCH-------HHHHHHHCTSSEEEEEE-T
T ss_pred chhHHHHHhhhCCeeeEEecCcccHHHH----Hhc-CcEEEECcchhcCH-------HHHHHhccCCCeEEeccCC
Confidence 5666666667799999987665444433 333 59999998754322 1234555788999886543
No 353
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=47.30 E-value=30 Score=24.91 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 112 CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 112 ~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
....+++++|.||.=.+|..+... --..+....+||+++.++.
T Consensus 183 ~aL~~~~~i~~lVtK~SG~~g~~e------Ki~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 183 RALLRQHRIDVVVTKNSGGAGTEA------KLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHH------HHHHHHHcCCeEEEEeCCC
Confidence 345778999999885554432211 1257888899999998765
No 354
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=47.25 E-value=93 Score=21.47 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+...|.++.......++ ....++.+...++|.||+.....+.. .-..+...++||+.+-.
T Consensus 15 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~--------~~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 15 AELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDE--------LLEELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchH--------HHHHHHHcCCCEEEecc
Confidence 456666677777777777654333343 23455556667889888865432211 13346677888887743
No 355
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.17 E-value=1.3e+02 Score=23.03 Aligned_cols=67 Identities=10% Similarity=0.004 Sum_probs=40.2
Q ss_pred ecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHH
Q 031202 11 MDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTL 90 (164)
Q Consensus 11 ~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (164)
+++-.++..-++..+++++..+.+|.++-..+.+... .+....+..+.|.+.
T Consensus 258 i~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~----------------------------~~~~s~~~~~~F~~~ 309 (345)
T PRK14466 258 FKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVD----------------------------LEGSDMARMEAFRDY 309 (345)
T ss_pred eCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCC----------------------------CcCCCHHHHHHHHHH
Confidence 3443333333444555566667777777766543211 112346777888888
Q ss_pred hhhcCceEEEEEeeC
Q 031202 91 SRTKGAKVVAKVYWG 105 (164)
Q Consensus 91 ~~~~~~~~~~~v~~g 105 (164)
+...|+.+..+-..|
T Consensus 310 L~~~gi~~tvR~s~G 324 (345)
T PRK14466 310 LTSHGVFTTIRASRG 324 (345)
T ss_pred HHHCCCcEEEeCCCC
Confidence 888999888765555
No 356
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=47.15 E-value=19 Score=29.03 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=19.5
Q ss_pred hhhHHHHHHHhcCCCEEEEee
Q 031202 107 PREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~ 127 (164)
.+++|+..|++.++|+|++|.
T Consensus 40 tFeEIl~iA~e~~VDmiLlGG 60 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGG 60 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecC
Confidence 479999999999999999995
No 357
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=47.14 E-value=1.1e+02 Score=22.30 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=35.3
Q ss_pred cCceEEEEEeeC-ChhhH-HHHHHHhcCCCEEEEeecCCccccceeeccch----------hHHhcCCCccEEEEeC
Q 031202 94 KGAKVVAKVYWG-DPREK-LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVS----------NHVVTNSSCPVTVVKG 158 (164)
Q Consensus 94 ~~~~~~~~v~~g-~~~~~-I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~----------~~v~~~~~~pVliv~~ 158 (164)
.| +.+..+.+| ++..+ .++.|.+...+.+|+-+.=.+ ..+.++..+- ..=+++.+|||+|+..
T Consensus 126 ~g-~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf~S-~~rv~~~~~~~~~~~d~f~~i~kI~~i~~PVLiiHg 200 (258)
T KOG1552|consen 126 YG-SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSPFTS-GMRVAFPDTKTTYCFDAFPNIEKISKITCPVLIIHG 200 (258)
T ss_pred cC-CCceEEEEEecCCchhhhhHhhcCCcceEEEeccchh-hhhhhccCcceEEeeccccccCcceeccCCEEEEec
Confidence 35 556566666 33322 467777777888888654322 2222222100 2224566799999984
No 358
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=47.07 E-value=1.2e+02 Score=22.67 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..-+.+++.|.++|+..+....++.+.+.+
T Consensus 27 ~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p 56 (305)
T PRK05627 27 RGHQALLARAREIARERGLPSVVMTFEPHP 56 (305)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCCH
Confidence 446789999999999888888788776544
No 359
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=47.03 E-value=81 Score=20.71 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeC--ChhhHHHHHHHhcCCCEEEEeecCCc-cccceeeccchhHHhcCCCccEEEE
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWG--DPREKLCDAVEDLKLDTLVVGSRGLG-ALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~~~I~~~a~~~~~dliv~g~~~~~-~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
..+++....+..+..|.++...+..+ +..+.+.+....+++|-++.-..... ............+++++.+..++++
T Consensus 17 ~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~ 96 (164)
T PF01012_consen 17 SLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLF 96 (164)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 35677777788877788888765443 45666666677789997777654332 2222224456677777777888888
Q ss_pred eCC
Q 031202 157 KGN 159 (164)
Q Consensus 157 ~~~ 159 (164)
+..
T Consensus 97 ~~t 99 (164)
T PF01012_consen 97 GST 99 (164)
T ss_dssp ESS
T ss_pred cCc
Confidence 764
No 360
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=46.92 E-value=69 Score=22.16 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC--CccEEE
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS--SCPVTV 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~--~~pVli 155 (164)
--+.+++.+.|.++.+ ++.+..... ..+..++|.|||+.-+.++-. .| ....++++. +.|+|=
T Consensus 15 yNLv~yl~~lg~~v~V-~rnd~~~~~---~~~~~~pd~iviSPGPG~P~d---~G-~~~~~i~~~~~~~PiLG 79 (191)
T COG0512 15 YNLVQYLRELGAEVTV-VRNDDISLE---LIEALKPDAIVISPGPGTPKD---AG-ISLELIRRFAGRIPILG 79 (191)
T ss_pred HHHHHHHHHcCCceEE-EECCccCHH---HHhhcCCCEEEEcCCCCChHH---cc-hHHHHHHHhcCCCCEEE
Confidence 3445566666755553 334422222 667777899999865444332 23 234455553 378773
No 361
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=46.92 E-value=1.3e+02 Score=22.91 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC--c-cccceeecc-chhHHhcCCCccEEEEeC
Q 031202 89 TLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL--G-ALKRVLLGS-VSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~--~-~~~~~~~gs-~~~~v~~~~~~pVliv~~ 158 (164)
..+.+.|+++.. ...+. +-......++|.+++|...- + ..-.. .|+ ...-++++..+|++++=+
T Consensus 200 ~~L~~~GI~vtl--I~Dsa---v~~~m~~~~vd~VivGAd~v~~nG~v~nk-iGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 200 WELVQEGIPATL--ITDSM---AAHLMKHGEVDAVIVGADRIAANGDTANK-IGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred HHHHHCCCCEEE--EcccH---HHHHhcccCCCEEEEcccEEecCCCEeeh-hhHHHHHHHHHHhCCCEEEecc
Confidence 344566888774 33332 33444456789999998642 1 22222 333 344455888899999854
No 362
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=46.81 E-value=1.3e+02 Score=22.88 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=28.3
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
.|+......+....+ +|+||+.+... ...+.+.+++++||+
T Consensus 87 kgEsl~Dt~rvls~y-~D~iviR~~~~---------~~~~~~a~~~~vPVI 127 (331)
T PRK02102 87 KKESIEDTARVLGRM-YDGIEYRGFKQ---------EIVEELAKYSGVPVW 127 (331)
T ss_pred CCcCHHHHHHHHhhc-CCEEEEECCch---------HHHHHHHHhCCCCEE
Confidence 355555556666666 89999975432 246778888999986
No 363
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=46.81 E-value=1e+02 Score=21.87 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHH
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHV 145 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v 145 (164)
...++-++.++.|++.-....=+.|.+.+..+..+. |+|.+-+-.-++..+.|..++.++|
T Consensus 97 ~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~v--D~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 97 HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDV--DLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhC--CEEEEEeECCCCcccccCHHHHHHH
Confidence 344445566666888877666679999999999998 8887766544444455555554443
No 364
>PRK12361 hypothetical protein; Provisional
Probab=46.58 E-value=1.3e+02 Score=24.34 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
..+.+.+.+.+. .+++...... .-...+.+.+.+.++|.||+..-. +.+ ..++..+. +.++|+-++|-.+
T Consensus 261 ~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGD-GTl-----~ev~~~l~-~~~~~lgiiP~GT 331 (547)
T PRK12361 261 YGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGGD-GTV-----TEVASELV-NTDITLGIIPLGT 331 (547)
T ss_pred HHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCC-cHH-----HHHHHHHh-cCCCCEEEecCCc
Confidence 444555555443 4444433322 335777777766777877664322 212 23344443 4568899998654
No 365
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=46.56 E-value=53 Score=19.98 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=33.8
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
.+.-++..+...+-+||+.+.-.... -+..++-+.-+++||+..+..+
T Consensus 24 ~k~tiK~lk~gkaKliiiAsN~P~~~-----k~~ieyYAkLs~ipV~~y~Gt~ 71 (100)
T COG1911 24 SKRTIKSLKLGKAKLIIIASNCPKEL-----KEDIEYYAKLSDIPVYVYEGTS 71 (100)
T ss_pred hHHHHHHHHcCCCcEEEEecCCCHHH-----HHHHHHHHHHcCCcEEEecCCc
Confidence 35667778888888999987643332 2456777777889999887544
No 366
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=46.52 E-value=49 Score=22.44 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=32.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
...||+++..|.+|...+. |++-|+..+..+..+.-....
T Consensus 109 ~GDvLigISTSGNS~nVl~-Ai~~Ak~~gm~vI~ltG~~GG 148 (176)
T COG0279 109 PGDVLIGISTSGNSKNVLK-AIEAAKEKGMTVIALTGKDGG 148 (176)
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHcCCEEEEEecCCCc
Confidence 4689999999999988776 788899999988887665544
No 367
>PRK13936 phosphoheptose isomerase; Provisional
Probab=46.49 E-value=49 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=31.7
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+.+++.++.|..+...++ ++..|+..|+++..+.-....
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~-~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQ-AIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHH-HHHHHHHCCCeEEEEECCCCC
Confidence 35789999999988887666 677788899988877765443
No 368
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.46 E-value=59 Score=24.69 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=45.9
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeec-CCccccc----------------eeeccchhHHhcCCCc
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSR-GLGALKR----------------VLLGSVSNHVVTNSSC 151 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~-~~~~~~~----------------~~~gs~~~~v~~~~~~ 151 (164)
.+++.+.-+-.. +..-+...++++.|++.+..+|+..+. +.....+ ..+......+++++.+
T Consensus 7 ~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~V 86 (340)
T cd00453 7 VAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGV 86 (340)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCC
Confidence 344445544443 334478899999999999999998766 2212111 1345567778889999
Q ss_pred cEEEEeCC
Q 031202 152 PVTVVKGN 159 (164)
Q Consensus 152 pVliv~~~ 159 (164)
||.+-=+.
T Consensus 87 PV~lHLDH 94 (340)
T cd00453 87 PVILHTDH 94 (340)
T ss_pred CEEEEcCC
Confidence 99875443
No 369
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=46.43 E-value=39 Score=26.36 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=26.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEe------eCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVY------WGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~------~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+++.+.+.+.......++-..+. .|+=.+++++.+++.++.++.+...+..
T Consensus 72 ~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~ 128 (427)
T cd01971 72 DRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFK 128 (427)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcC
Confidence 44555555555544444333221 1444555555556666777777655433
No 370
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=46.40 E-value=1.2e+02 Score=22.38 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=44.9
Q ss_pred HHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCceEEEEEe
Q 031202 24 AADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVY 103 (164)
Q Consensus 24 a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (164)
..+.|+..|++ +++|+.-++.... +.....++.+++.|.+.|+++..+..
T Consensus 122 i~~~Ak~mGAk-tFVh~sfprhms~-----------------------------~~l~~Rr~~M~~~C~~lGi~fv~~ta 171 (275)
T PF12683_consen 122 IVWAAKKMGAK-TFVHYSFPRHMSY-----------------------------ELLARRRDIMEEACKDLGIKFVEVTA 171 (275)
T ss_dssp HHHHHHHTT-S--EEEEEETTGGGS-----------------------------HHHHHHHHHHHHHHHHCT--EEEEEE
T ss_pred HHHHHHHcCCc-eEEEEechhhcch-----------------------------HHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34556677776 5677766654321 12345677888899999999886421
Q ss_pred e---CC---------hhhHHHHHHHhcCCCEEEEeecC
Q 031202 104 W---GD---------PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 104 ~---g~---------~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
= ++ ..+.|.+..++++-|.-+-+++.
T Consensus 172 PDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaff~TN~ 209 (275)
T PF12683_consen 172 PDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAFFCTND 209 (275)
T ss_dssp ---SSTCHHHHHHHHHHHHHHHHHHHH-S--EEEESSH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeEEecCc
Confidence 1 11 34778888999999988888763
No 371
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=46.39 E-value=58 Score=19.08 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=33.2
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCc-cc-cceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLG-AL-KRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~-~~-~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
...+.|.+..++.+++.|.+|..+.- +. ...+.-...+.+-++.++||.+..+...
T Consensus 38 ~~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~nDa~s 95 (99)
T smart00732 38 ADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVVLVDERLA 95 (99)
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEeCCcc
Confidence 34666777777777888888865421 10 0001123334445567899999987654
No 372
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=46.23 E-value=1e+02 Score=21.64 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=47.4
Q ss_pred EEecCChhhHHHHHHHHHHhccCCCeEE-EEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHH
Q 031202 9 VGMDNSPNSKAALRWAADNLIDSGDLII-LIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDIL 87 (164)
Q Consensus 9 v~~d~s~~s~~al~~a~~la~~~~~~l~-ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
+.++|..+|-.++.+|.+ .|.+++ ++++........ .....-.+.+
T Consensus 2 vl~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~~-----------------------------~~~~~~~~~~ 48 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALE----EGHEVRCLITVVPENEESY-----------------------------MFHTPNIELT 48 (218)
T ss_pred eeecCcHHHHHHHHHHHH----cCCEEEEEEEeccCCCCcc-----------------------------ccCCCCHHHH
Confidence 567788888776665555 456775 556654321100 0001123556
Q ss_pred HHHhhhcCceEEEEEeeC---C----hhhHHHHHHHhcCCCEEEEeecC
Q 031202 88 DTLSRTKGAKVVAKVYWG---D----PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g---~----~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+.+++..|++....-..+ . ....+.+ ++..+++.|+.|.-.
T Consensus 49 ~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~-~~~~g~~~vv~G~i~ 96 (218)
T TIGR03679 49 RLQAEALGIPLVKIETSGEKEKEVEDLKGALKE-LKREGVEGIVTGAIA 96 (218)
T ss_pred HHHHHHhCCCEEEEECCCCChHHHHHHHHHHHH-HHHcCCCEEEECCcc
Confidence 667777788765432222 1 2233333 334489999999764
No 373
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=46.19 E-value=99 Score=21.49 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=25.3
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.++|+.++|.=+|.- |+.+....|.+++.+|+..++
T Consensus 4 gk~l~LlSGGiDSpV----Aa~lm~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 4 GKALALLSGGIDSPV----AAWLMMKRGCEVIALHFDSPP 39 (197)
T ss_dssp -EEEEE-SSCCHHHH----HHHHHHCBT-EEEEEEEE-TT
T ss_pred ceEEEEecCCccHHH----HHHHHHHCCCEEEEEEEECCC
Confidence 588999999888865 445556679999999998654
No 374
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.15 E-value=1.6e+02 Score=23.88 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchh
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSN 143 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~ 143 (164)
++.+-+++|+.+++|.|+|-+-||..-...++++.+.
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k 490 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAK 490 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHH
Confidence 4677788899999999999887776655666666554
No 375
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=46.09 E-value=84 Score=23.27 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=45.4
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-cc-eeeccchhHHhcCC--CccEEEEe
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-KR-VLLGSVSNHVVTNS--SCPVTVVK 157 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~~-~~~gs~~~~v~~~~--~~pVliv~ 157 (164)
.+.+.+.-+-.- +..-+...++++.|++.+.-+|+..+.+.... .+ -.+......+..++ .+||.+-=
T Consensus 12 ~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHL 84 (288)
T TIGR00167 12 DAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHL 84 (288)
T ss_pred HHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEEC
Confidence 344445444433 44448899999999999999999876654322 11 13556677788888 88988743
No 376
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=46.06 E-value=76 Score=20.12 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=26.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g 126 (164)
+.....+.+.+++.|.++.......|-.+.|.+..++ .++|+||..
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITT 64 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 3444566777788888776554444434444444322 247988874
No 377
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=45.78 E-value=85 Score=20.58 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhc--CCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDL--KLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~--~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
...+++.+.+++.+.+.|+++++. ..+-..+|++...+. ++|-||+..-..+... --....+....+|++=
T Consensus 24 ~tl~di~~~~~~~a~~~g~~v~~~--QSN~EGelId~i~~a~~~~dgiIINpga~THtS-----iAl~DAl~~~~~P~vE 96 (141)
T TIGR01088 24 QTLEEIVEIIETFAAQLNVELEFF--QSNSEGQLIDKIHEAEGQYDGIIINPGALTHTS-----VALRDALAAVSLPVVE 96 (141)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEE--eeCcHHHHHHHHHhccccCCEEEEcChHHhhhH-----HHHHHHHHcCCCCEEE
Confidence 345677778888888888888854 333344444443332 3699999755443211 1234456777889887
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 97 VH 98 (141)
T TIGR01088 97 VH 98 (141)
T ss_pred EE
Confidence 75
No 378
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=45.60 E-value=73 Score=19.81 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=49.3
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+|+++..+. .++...+.+-.++. ...++..+...+..+.. +..+++.
T Consensus 2 ~~ili~sHG~-~A~gl~~s~~~i~G-~~~~i~~i~~~~~~~~~------------------------------~~~~~l~ 49 (116)
T TIGR00824 2 IAIIISGHGQ-AAIALLKSAEMIFG-EQNNVGAVPFVPGENAE------------------------------TLQEKYN 49 (116)
T ss_pred cEEEEEecHH-HHHHHHHHHHHHcC-CcCCeEEEEcCCCcCHH------------------------------HHHHHHH
Confidence 5788888887 55555554444443 44568888766554321 0112333
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEE
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVV 125 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~ 125 (164)
+.+.+.-...++=+-+-+..|+|.........+.+ ++=|+
T Consensus 50 ~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~-~~~vI 89 (116)
T TIGR00824 50 AALADLDTEEEVLFLVDIFGGSPYNAAARIIVDKP-HMDVI 89 (116)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcC-CEEEE
Confidence 33333323345656666777899988887764432 44344
No 379
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=45.56 E-value=84 Score=24.00 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=46.3
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCC-ccEEEEe
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSS-CPVTVVK 157 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~-~pVliv~ 157 (164)
.+.+.+.-+-.- +..-....++++.|++.+.-+|+..+.+...+.+ -++......+.++++ +||.+-=
T Consensus 12 ~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHL 82 (347)
T PRK13399 12 HAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQ 82 (347)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 344445444433 4445889999999999999999988765443222 235567778888885 9988743
No 380
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=45.47 E-value=1.1e+02 Score=21.64 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+++.|..+.......++ ....++.....++|-||+.......... ....-.-+....+||+.+-
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~---~~~~~~~~~~~~ipvV~~~ 90 (273)
T cd01541 14 FPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNP---NIDLYLKLEKLGIPYVFIN 90 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccc---cHHHHHHHHHCCCCEEEEe
Confidence 3566777778888888887654333344 3456666777889999986432111100 0011123456678998886
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 91 ~ 91 (273)
T cd01541 91 A 91 (273)
T ss_pred c
Confidence 4
No 381
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=45.43 E-value=86 Score=23.95 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=46.1
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCC-ccEEEEe
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSS-CPVTVVK 157 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~-~pVliv~ 157 (164)
.+.+.+.-+-.- +..-....+|++.|++.+.-+|+..+.+.....+ -++......+..+++ +||.+-=
T Consensus 10 ~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHL 80 (347)
T TIGR01521 10 HAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQ 80 (347)
T ss_pred HHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 344445444433 3344889999999999999999988765433222 235567778888886 9998753
No 382
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=45.35 E-value=71 Score=20.36 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=33.7
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
-.+|+|.-|....|+...+.++.-....|.++..+...+.+
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP 80 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTP 80 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HH
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcH
Confidence 46899999999999999999999888899999988855443
No 383
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=45.33 E-value=46 Score=18.46 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=17.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhc
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLI 29 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~ 29 (164)
++|.++.|.+...+.+.....+...
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~ 72 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLK 72 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhh
Confidence 4688888888887777766655544
No 384
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.28 E-value=1.4e+02 Score=23.13 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=27.9
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHH-HHhcCCCEEEEeecCCcc
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDA-VEDLKLDTLVVGSRGLGA 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~-a~~~~~dliv~g~~~~~~ 132 (164)
.+.+++..+++..|+++...- + .+++.+. .+..++|+|++=+.|++.
T Consensus 220 aa~eQL~~~a~~lgvpv~~~~---~-~~~l~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 220 GAKKQIQTYGDIMGIPVKAIE---S-FKDLKEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHHHHHhhcCCcceEeeC---c-HHHHHHHHHHhCCCCEEEEcCCCCCc
Confidence 445557777777788764321 1 2223322 233677999998777765
No 385
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.21 E-value=1.1e+02 Score=21.68 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.......+.+.+.+.|..+...-..+++. ...++.....++|-||+....... ..... +.+....+||+++-
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~-----~~~~i-~~~~~~~iPvV~~~ 87 (282)
T cd06318 14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEG-----LVPAV-AAAKAAGVPVVVVD 87 (282)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccc-----hHHHH-HHHHHCCCCEEEec
Confidence 34667777788888888776533334543 346666778899999996432111 00112 23345678988885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 88 ~ 88 (282)
T cd06318 88 S 88 (282)
T ss_pred C
Confidence 4
No 386
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=45.13 E-value=94 Score=20.90 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g 126 (164)
+.....+...+.+.|.++......+|-.+.|.+..+. .++|+||..
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 3445567777888899887765556544445554433 357988885
No 387
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.91 E-value=1.1e+02 Score=21.50 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+...|..+......+++ ....++.+...++|-+|+......... ...+ -+...++||+.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~-~~~~~~ipvV~~~ 87 (267)
T cd06322 14 YIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIR-----AAIA-KAKKAGIPVITVD 87 (267)
T ss_pred HHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhH-----HHHH-HHHHCCCCEEEEc
Confidence 3567777888888888877654333343 345566667788999999643221111 1122 3455678998885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 88 ~ 88 (267)
T cd06322 88 I 88 (267)
T ss_pred c
Confidence 4
No 388
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=44.69 E-value=1.5e+02 Score=23.03 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 16 NSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 16 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
....+++.++.+++..+.++++.|+.....
T Consensus 225 ~e~~av~~~~~~a~~~g~r~~i~H~ss~~~ 254 (415)
T cd01297 225 SILEALDELLRLGRETGRPVHISHLKSAGA 254 (415)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEEEecCCC
Confidence 345678888888888888999999886653
No 389
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.69 E-value=1.3e+02 Score=22.27 Aligned_cols=69 Identities=10% Similarity=-0.155 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhhhcCceEEEEE------------eeCChhhHHHHHHHhc--CCCEEEEeecCCccccceeeccchhHHh
Q 031202 81 PEVLDILDTLSRTKGAKVVAKV------------YWGDPREKLCDAVEDL--KLDTLVVGSRGLGALKRVLLGSVSNHVV 146 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v------------~~g~~~~~I~~~a~~~--~~dliv~g~~~~~~~~~~~~gs~~~~v~ 146 (164)
..+.+.+...+.+.++.+.... ..|+-.++|++..+.. ++++.++-+... .+..++
T Consensus 64 ~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~----------~~~~lA 133 (286)
T PRK06027 64 ETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD----------DLRSLV 133 (286)
T ss_pred HHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh----------hHHHHH
Confidence 4556666667766666554221 1257889999988774 456666655432 244568
Q ss_pred cCCCccEEEEeCC
Q 031202 147 TNSSCPVTVVKGN 159 (164)
Q Consensus 147 ~~~~~pVliv~~~ 159 (164)
++..+|+..++..
T Consensus 134 ~~~gIp~~~~~~~ 146 (286)
T PRK06027 134 ERFGIPFHHVPVT 146 (286)
T ss_pred HHhCCCEEEeccC
Confidence 8888999887653
No 390
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=44.31 E-value=1.3e+02 Score=22.21 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=37.4
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC--cc-ccceeecc-chhHHhcCCCccEEEEeCCC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL--GA-LKRVLLGS-VSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~--~~-~~~~~~gs-~~~~v~~~~~~pVliv~~~~ 160 (164)
...+.+.|+++.. ...+..-.+ .++ +|.+++|...= ++ .-.. .|. ...-++++-.+|++++-+..
T Consensus 153 a~eL~~~GI~vtl--I~Dsa~~~~---m~~--vd~VivGAD~I~~nG~v~NK-iGT~~lA~~Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 153 ANELEFLGIEFEV--ITDAQLGLF---AKE--ATLALVGADNVTRDGYVVNK-AGTYLLALACHDNGVPFYVAAETF 221 (275)
T ss_pred HHHHHHCCCCEEE--EeccHHHHH---HHh--CCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcCCCEEEECccc
Confidence 4455566888774 333333333 333 79999997642 11 2222 333 33455688889999985433
No 391
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=44.29 E-value=1.1e+02 Score=24.27 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=18.4
Q ss_pred EEEEEecCChhhHHHHHHHHHHh
Q 031202 6 TVGVGMDNSPNSKAALRWAADNL 28 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la 28 (164)
.+.|+.+|.++|..++..+....
T Consensus 15 p~vV~fSGGKDSta~L~Lv~~Al 37 (447)
T TIGR03183 15 PWVVGYSGGKDSTAVLQLIWNAL 37 (447)
T ss_pred ceEEEeCCCHHHHHHHHHHHHHH
Confidence 46899999999988888766543
No 392
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.26 E-value=69 Score=19.09 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=44.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-Chhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.....+.+.+++.|.+..++-+.+ .... .|....... |+||+-..--+.- .-..+....+..+.|++.++.
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~a--D~VIv~t~~vsH~----~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKA--DLVIVFTDYVSHN----AMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCC--CEEEEEeCCcChH----HHHHHHHHHHHcCCcEEEECC
Confidence 345566777777888887751122 2222 255555554 9999876532211 113477788888999999875
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 84 ~~ 85 (97)
T PF10087_consen 84 RG 85 (97)
T ss_pred CC
Confidence 43
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=44.21 E-value=1.4e+02 Score=22.49 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHH---HHHHHhcCCCEEEEeecCCcccc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKL---CDAVEDLKLDTLVVGSRGLGALK 134 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I---~~~a~~~~~dliv~g~~~~~~~~ 134 (164)
+.+++..++...++.+.......++...+ +..+...++|+|++-+.|+....
T Consensus 157 a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~ 211 (318)
T PRK10416 157 AIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNK 211 (318)
T ss_pred hHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCC
Confidence 34455556666677665432233554322 34556788999999988876543
No 394
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=44.18 E-value=69 Score=19.75 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..+.+++.++.+......++.+. .|+..+.++.++.-...
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~-~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLR-FAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHH-HHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccchhhhhhhH-HHHhcCCeEEEEeCCCC
Confidence 34688999999888888777554 88989998855544333
No 395
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=44.16 E-value=67 Score=18.92 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=44.1
Q ss_pred hhHHHHHHHHhhhcCc-eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGA-KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~ 158 (164)
....+.+...+...|. .+. ...+ .++..+..+...+|++++...-.. ... -...+++-... .+|++++-.
T Consensus 8 ~~~~~~l~~~l~~~~~~~v~---~~~~-~~~~~~~~~~~~~d~iiid~~~~~-~~~---~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 8 PEIRELLEKLLERAGYEEVT---TASS-GEEALELLKKHPPDLIIIDLELPD-GDG---LELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp HHHHHHHHHHHHHTTEEEEE---EESS-HHHHHHHHHHSTESEEEEESSSSS-SBH---HHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHHhCCCCEEE---EECC-HHHHHHHhcccCceEEEEEeeecc-ccc---cccccccccccccccEEEecC
Confidence 3455666667776676 333 2344 555667778888999999865332 221 23455555544 488888865
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 80 ~~ 81 (112)
T PF00072_consen 80 ED 81 (112)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 396
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=43.61 E-value=22 Score=27.14 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=39.6
Q ss_pred CChhhHHHHHH--HhcCCC-EEEEeecCCccc----cceeeccchhHHhcCCCccEEEEeCC
Q 031202 105 GDPREKLCDAV--EDLKLD-TLVVGSRGLGAL----KRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 105 g~~~~~I~~~a--~~~~~d-liv~g~~~~~~~----~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
|+....+...+ .-+++= ++++|+++..+. .+..+|..+..+++...+|..++++.
T Consensus 63 Gn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~ 124 (361)
T TIGR03297 63 GNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTD 124 (361)
T ss_pred hhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCCC
Confidence 46777777774 334332 377788886642 34568999999999999999999653
No 397
>PHA02546 47 endonuclease subunit; Provisional
Probab=43.27 E-value=56 Score=24.65 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhcCc
Q 031202 83 VLDILDTLSRTKGA 96 (164)
Q Consensus 83 ~~~~~~~~~~~~~~ 96 (164)
.++++.+.+.+.++
T Consensus 27 ~l~~ii~~a~~~~v 40 (340)
T PHA02546 27 FIKQAIEYSKAHGI 40 (340)
T ss_pred HHHHHHHHHHHcCC
Confidence 34444444444443
No 398
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=43.09 E-value=1.4e+02 Score=22.28 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=28.5
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.|+-.....+....+ +|+||+.+... ...+.+.+++.+||+=-
T Consensus 80 kgEsl~Dt~~vls~y-~D~iv~R~~~~---------~~~~~~a~~~~vPVINa 122 (304)
T TIGR00658 80 RGESIKDTARVLSRY-VDGIMARVYKH---------EDVEELAKYASVPVING 122 (304)
T ss_pred CCCCHHHHHHHHHHh-CCEEEEECCCh---------HHHHHHHHhCCCCEEEC
Confidence 355555556666666 89999975432 24667788889998643
No 399
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=43.01 E-value=1.4e+02 Score=22.26 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc---cccceeeccchhHHhcCCCccEEEEeC
Q 031202 87 LDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG---ALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~---~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+.+.+.+.|+++... ..+..-.+ ..+ +|.+++|...-. ..-.........-++++..+||+++=+
T Consensus 158 ~a~~L~~~gI~vtlI--~Dsa~~~~---m~~--vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 158 TAKELRDYGIPVTLI--VDSAVRYF---MKE--VDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAE 225 (301)
T ss_pred HHHHHHHCCCCEEEE--ehhHHHHH---HHh--CCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcc
Confidence 344555678888753 33333333 333 799999986422 222222223444566788899999844
No 400
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=42.98 E-value=1.4e+02 Score=22.22 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=22.9
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCE
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDT 122 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dl 122 (164)
+....+.+.+++.|+.+..++.+......+.......+++.
T Consensus 172 ~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~r 212 (324)
T TIGR01430 172 PDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATR 212 (324)
T ss_pred HHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchh
Confidence 34455556667778888877665432334444444455443
No 401
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=42.97 E-value=1.2e+02 Score=23.01 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=23.7
Q ss_pred ChhhHHHHHHHHHHhccCC-CeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSG-DLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~-~~l~ll~v~~~~ 44 (164)
...+++.+++|+++|+..+ .+|+++|-...-
T Consensus 146 r~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl 177 (334)
T PRK08997 146 RKGAERIVRFAYELARKEGRKKVTAVHKANIM 177 (334)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcc
Confidence 3557889999999998875 468888866554
No 402
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=42.96 E-value=94 Score=20.28 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccC-CCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDS-GDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTS 79 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~-~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
|+..++|++.++..+- ..+++++..+.... |-+| +....
T Consensus 1 ~~~~~~v~lsv~d~dK-~~l~~~a~~l~~ll~Gf~l---~AT~g------------------------------------ 40 (142)
T PRK05234 1 MPARKRIALIAHDHKK-DDLVAWVKAHKDLLEQHEL---YATGT------------------------------------ 40 (142)
T ss_pred CCcCcEEEEEEeccch-HHHHHHHHHHHHHhcCCEE---EEeCh------------------------------------
Confidence 4566788888876653 45678888877653 4332 11111
Q ss_pred ChhHHHHHHHHhhhc-CceEEEEEeeCC--hhhHHHHHHHhcCCCEEEEee
Q 031202 80 NPEVLDILDTLSRTK-GAKVVAKVYWGD--PREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~~v~~g~--~~~~I~~~a~~~~~dliv~g~ 127 (164)
..+++++. |++++..+ .+. -...|.+.+++..+|+||--.
T Consensus 41 -------Ta~~L~~~~Gi~v~~vi-~~~~gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 41 -------TGGLIQEATGLDVTRLL-SGPLGGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred -------HHHHHHhccCCeeEEEE-cCCCCCchhHHHHHHcCceeEEEEec
Confidence 11123345 88887653 321 126799999999999998755
No 403
>PRK09875 putative hydrolase; Provisional
Probab=42.94 E-value=94 Score=23.04 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCC--CEEEEeecCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKL--DTLVVGSRGL 130 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~--dliv~g~~~~ 130 (164)
++.++...+...+.|+.+.++.-.++...++++.+++.++ +-+||++-..
T Consensus 138 ~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~ 189 (292)
T PRK09875 138 EKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDL 189 (292)
T ss_pred HHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCC
Confidence 4445555555556688888776556666677888888877 7899997753
No 404
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=42.92 E-value=63 Score=21.15 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=19.0
Q ss_pred cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 118 LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 118 ~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.++|++|+-..+.- ......+.....++....+||++|-+
T Consensus 98 ~~~D~viid~~g~~-~~~~~~~~~~~dl~~~~~~~vilV~~ 137 (166)
T TIGR00347 98 QKYDFVLVEGAGGL-CVPITEEYTTADLIKLLQLPVILVVR 137 (166)
T ss_pred hcCCEEEEEcCCcc-ccCCCCCCcHHHHHHHhCCCEEEEEC
Confidence 34577776554321 11111222333466666666666643
No 405
>PRK10481 hypothetical protein; Provisional
Probab=42.78 E-value=1.2e+02 Score=21.55 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=36.9
Q ss_pred cCceEEEEEeeC--ChhhHHHHHHH---hcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 94 KGAKVVAKVYWG--DPREKLCDAVE---DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 94 ~~~~~~~~v~~g--~~~~~I~~~a~---~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.|.++....... ...+.+.+.++ ..++|+||++.-+.+. .....+-+..+.||+.-
T Consensus 152 ~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-------~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 152 LQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-------RHRDLLQKALDVPVLLS 212 (224)
T ss_pred cCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-------HHHHHHHHHHCcCEEcH
Confidence 377766443221 33456666666 6789999999887653 22566777888898753
No 406
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=42.75 E-value=1.1e+02 Score=21.09 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.|++.-....+...+++.+++-++..|+++.++++.+-.
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~ 43 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKN 43 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCC
Confidence 444444445667788888888888889999999998764
No 407
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=42.67 E-value=1.2e+02 Score=21.36 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHhhh-cCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 80 NPEVLDILDTLSRT-KGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
...+...+.+.+++ .|+.+......+++. ...++.....++|-+|+......... ..-..+.+.++||+.+
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~------~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATA------PIVKAANAAGIPLVYV 87 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhH------HHHHHHHHCCCeEEEe
Confidence 34666677777777 677766533334443 34455566778999998654322111 1223457778999988
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 88 ~~ 89 (272)
T cd06301 88 NR 89 (272)
T ss_pred cC
Confidence 54
No 408
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=42.64 E-value=1.2e+02 Score=21.41 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.+.+.+++.|..+.......+..+.+.+.....++|-||+-..... . ..-+-+...++||+.+..
T Consensus 25 ~~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~--~------~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 25 FLSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ--D------PLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC--h------HHHHHHHhCCCCEEEECC
Confidence 3456666777777778777654333333556666677778897777432111 1 112344567788888854
No 409
>PLN02347 GMP synthetase
Probab=42.62 E-value=1.9e+02 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=28.9
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.++++|+++|.-+|-.++..+.+ ..+.+++.+++....
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~---alG~~v~av~id~g~ 266 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHK---AIGDRLHCVFVDNGL 266 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHH---HhCCcEEEEEEeCCC
Confidence 46899999999988766665554 246789999998654
No 410
>PRK13938 phosphoheptose isomerase; Provisional
Probab=42.57 E-value=50 Score=22.86 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+.+++.++.|..+...++ +++.|+..|+++..+.-....
T Consensus 113 ~~DllI~iS~SG~t~~vi~-a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 113 PGDTLFAISTSGNSMSVLR-AAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCCC
Confidence 4679999999988887665 688889999988887765544
No 411
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=42.50 E-value=92 Score=23.12 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=43.3
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-c-ceeeccchhHHhcCC--CccEEEE
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-K-RVLLGSVSNHVVTNS--SCPVTVV 156 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~-~~~~gs~~~~v~~~~--~~pVliv 156 (164)
.+.+.+.-+-.- +..-+...++++.|++.+..+|+..+.+.... . -..+......++++. .+||.+-
T Consensus 12 ~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lH 83 (293)
T PRK07315 12 AARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIH 83 (293)
T ss_pred HHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 344444433332 44448899999999999999999876654322 1 112345677788888 6688764
No 412
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=42.40 E-value=1.2e+02 Score=21.22 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.......+.+.+.+.|..+......+++. ...++.....++|-++++........ ..-..+.+.++|++.+-
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~------~~l~~l~~~~ipvv~~~ 87 (268)
T cd06323 14 FVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVV------PAVKAANEAGIPVFTID 87 (268)
T ss_pred HHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH------HHHHHHHHCCCcEEEEc
Confidence 34666777777777787776433333443 34555566678999888643211100 01123456689998884
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 88 ~ 88 (268)
T cd06323 88 R 88 (268)
T ss_pred c
Confidence 4
No 413
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=42.31 E-value=1.6e+02 Score=22.73 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=37.2
Q ss_pred HhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC--cc-ccceeeccch-hHHhcCCCccEEEEeC
Q 031202 90 LSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL--GA-LKRVLLGSVS-NHVVTNSSCPVTVVKG 158 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~--~~-~~~~~~gs~~-~~v~~~~~~pVliv~~ 158 (164)
.+.+.|+++... ..+ .+-.......+|.+++|...= ++ .-. -.|+-. .-++++..+|++++=+
T Consensus 222 eL~~~GIpvtlI--~Ds---a~~~~m~~~~Vd~VivGAD~I~~NG~v~N-KiGTy~lA~~Ak~~~vPfyV~ap 288 (363)
T PRK05772 222 ELMEEGIKVTLI--TDT---AVGLVMYKDMVNNVMVGADRILRDGHVFN-KIGTFKEAVIAHELGIPFYALAP 288 (363)
T ss_pred HHHHCCCCEEEE--ehh---HHHHHHhhcCCCEEEECccEEecCCCEee-hhhhHHHHHHHHHhCCCEEEEcc
Confidence 345568887743 333 233344456789999998642 22 211 234433 4455788899999854
No 414
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=42.21 E-value=2.2e+02 Score=24.44 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=74.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhc-cC--CCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLI-DS--GDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~-~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
+||.++...++-..++.. .++.. .. ...++++|..+-.....+ ........... ...........
T Consensus 445 ril~cl~~~~~is~~i~~-le~~~~~~~~p~~v~~lhlveL~~~~~~----------~li~h~~~~~~-~~~~~s~~~~~ 512 (769)
T KOG1650|consen 445 RILTCLHGPENISGIINL-LELSSGSLESPLSVYALHLVELVGRATP----------LLISHKLRKNG-RVESRSSSSDQ 512 (769)
T ss_pred EEEEEecCCCcchHHHHH-HHHcCCCCCCCcceeeeeeeecccccch----------hhhhhhhcccc-ccccccccchh
Confidence 789999888876666654 44433 33 567788888776432211 00000000000 00000000112
Q ss_pred HHHHHHHHhh--hcCceEEEEEe---eCChhhHHHHHHHhcCCCEEEEeecCC-c---ccc--ceeeccchhHHhcCCCc
Q 031202 83 VLDILDTLSR--TKGAKVVAKVY---WGDPREKLCDAVEDLKLDTLVVGSRGL-G---ALK--RVLLGSVSNHVVTNSSC 151 (164)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~v~---~g~~~~~I~~~a~~~~~dliv~g~~~~-~---~~~--~~~~gs~~~~v~~~~~~ 151 (164)
....++.+.+ ..++.++.-.. ....-+.|+..+-+.+.+++++.-+.+ + .++ +..+......+++++||
T Consensus 513 i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPC 592 (769)
T KOG1650|consen 513 INVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPC 592 (769)
T ss_pred hHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCC
Confidence 2233332222 23444443211 135568899999999999999985433 1 111 12234678899999999
Q ss_pred cEEEEeC
Q 031202 152 PVTVVKG 158 (164)
Q Consensus 152 pVliv~~ 158 (164)
.|-|.=+
T Consensus 593 SVgIlvd 599 (769)
T KOG1650|consen 593 SVGILVD 599 (769)
T ss_pred eEEEEEe
Confidence 9988754
No 415
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.20 E-value=51 Score=25.70 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=11.4
Q ss_pred HHHHHHHhccCCCeEEEEEEe
Q 031202 21 LRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 21 l~~a~~la~~~~~~l~ll~v~ 41 (164)
+-=|...+.....-+.++|--
T Consensus 13 ~~Ga~~~~~~i~~~~~l~Hgp 33 (430)
T cd01981 13 HIGTLRVASSFKNVHAVMHAP 33 (430)
T ss_pred hhhHHHHHhhcCCcEEEEeCC
Confidence 344455555556666666653
No 416
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.04 E-value=1.5e+02 Score=22.33 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeec---CCccccce----eeccchhHHhcCCCccE
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSR---GLGALKRV----LLGSVSNHVVTNSSCPV 153 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~---~~~~~~~~----~~gs~~~~v~~~~~~pV 153 (164)
.++.+.......+..+-..+...++.+ .+.+.+++.++|.|-+.-. ........ .+-.....|....++||
T Consensus 89 ~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV 168 (334)
T PRK07565 89 YLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPV 168 (334)
T ss_pred HHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcE
Confidence 333443333333555555553334433 5666677778999999532 11111100 11234466777778998
Q ss_pred EEE
Q 031202 154 TVV 156 (164)
Q Consensus 154 liv 156 (164)
++=
T Consensus 169 ~vK 171 (334)
T PRK07565 169 AVK 171 (334)
T ss_pred EEE
Confidence 863
No 417
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=41.94 E-value=89 Score=21.41 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHHHhhhcCceEEEEEee--CCh---hhHHHHHHHhcCCC-EEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 85 DILDTLSRTKGAKVVAKVYW--GDP---REKLCDAVEDLKLD-TLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~--g~~---~~~I~~~a~~~~~d-liv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
..+++.+.+.+..+....-. ..+ .+.+.+.+++...+ .+++|++ -+ |-.+..+..+.++|-+++.+
T Consensus 18 ~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSS-lG-------G~~A~~La~~~~~~avLiNP 89 (187)
T PF05728_consen 18 QALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSS-LG-------GFYATYLAERYGLPAVLINP 89 (187)
T ss_pred HHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEC-hH-------HHHHHHHHHHhCCCEEEEcC
Confidence 45556666666655543222 233 34555666665543 8888866 22 33466677777888877766
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 90 av 91 (187)
T PF05728_consen 90 AV 91 (187)
T ss_pred CC
Confidence 44
No 418
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=41.91 E-value=1.2e+02 Score=22.07 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=38.2
Q ss_pred CceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+.. -+..+.+++.++|-+++..........--+-.--+.|+..++.|++++..+
T Consensus 70 ~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 70 RVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 45555444443443 455667899999988877553332221111123466778889999998754
No 419
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=41.88 E-value=1.2e+02 Score=21.38 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=32.8
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
..++.+.+.+.++|.|++......+......-.....+....++||+..-.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GG 201 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGG 201 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCC
Confidence 346667788889998888654432221112234567788888999988653
No 420
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=41.84 E-value=30 Score=23.57 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=21.4
Q ss_pred EEEEEecCChhhHHHHHHH-HHHhccCCCeEEEEEEeCCCC
Q 031202 6 TVGVGMDNSPNSKAALRWA-ADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a-~~la~~~~~~l~ll~v~~~~~ 45 (164)
+|+|.-.+....+..+..+ ++..++.+.++..+-.+....
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~ 42 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGP 42 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecC
Confidence 4555554444444333333 334556788887777665543
No 421
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.83 E-value=1.3e+02 Score=21.57 Aligned_cols=78 Identities=13% Similarity=0.004 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
...+..++++|+..|++..+++........ ... ...+...+.++.+.+.+.+.|+.
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~--------------~~~----------~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLT--------------PPN----------VIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCC--------------CHH----------HHHHHHHHHHHHHHHHHHHcCCE
Confidence 346777889999999998877643221100 000 01122346777788888888988
Q ss_pred EEEEEee------CChhhHHHHHHHhcC
Q 031202 98 VVAKVYW------GDPREKLCDAVEDLK 119 (164)
Q Consensus 98 ~~~~v~~------g~~~~~I~~~a~~~~ 119 (164)
+..+-.. .+-.+++.++++..+
T Consensus 145 l~iE~~~~~~~~~~~t~~~~~~l~~~~~ 172 (275)
T PRK09856 145 LILEPLTPYESNVVCNANDVLHALALVP 172 (275)
T ss_pred EEEecCCCCcccccCCHHHHHHHHHHcC
Confidence 8766321 123567777777765
No 422
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=41.77 E-value=72 Score=22.44 Aligned_cols=34 Identities=3% Similarity=-0.205 Sum_probs=25.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-++||+++.||-.+.++.+..-.|- . +++|.++-
T Consensus 19 ~k~IllgVtGSIAAyk~~~lvr~L~-~-g~~V~Vvm 52 (209)
T PLN02496 19 KPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAVV 52 (209)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHhc-C-CCeEEEEE
Confidence 4689999999999988888665553 3 66665543
No 423
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=41.41 E-value=26 Score=23.63 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCEEEEeecCCccccceeec----cchhHHh--cCCCccEEEEeCCCC
Q 031202 111 LCDAVEDLKLDTLVVGSRGLGALKRVLLG----SVSNHVV--TNSSCPVTVVKGNPV 161 (164)
Q Consensus 111 I~~~a~~~~~dliv~g~~~~~~~~~~~~g----s~~~~v~--~~~~~pVliv~~~~~ 161 (164)
|.-...-..+|++++..-..+.......| -++..++ -...+||+|+|.+-.
T Consensus 80 i~GrlqlGkYD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyivP~D~k 136 (187)
T COG1036 80 IAGRLQLGKYDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVPVDYK 136 (187)
T ss_pred eecceecccccEEEEcccccchHHHHHhhhHHHHHHHHHHHhcCCCCcEEEeccccc
Confidence 44445566779999986655544333332 0223333 344699999997653
No 424
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=41.20 E-value=1.2e+02 Score=21.17 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+...+.+.+.+.|..+.......++. ...++.....++|-||+-...... .....+....++||+.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-------~~~~~l~~~~~ipvV~i~ 86 (269)
T cd06275 14 FAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQ-------PLLAMLERYRHIPMVVMD 86 (269)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCh-------HHHHHHHhcCCCCEEEEe
Confidence 45677778888888887776433333443 345566777889988885432211 011223334578999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 87 ~~ 88 (269)
T cd06275 87 WG 88 (269)
T ss_pred cc
Confidence 54
No 425
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=41.14 E-value=73 Score=21.32 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=31.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
-+.+++.++.+..+...++ +++.|+..|+++..+.-.....
T Consensus 75 ~~D~vI~iS~sG~t~~~i~-~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 75 PGDLLIAISGSGETSSVVN-AAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHHCCCeEEEEECCCCCc
Confidence 4689999999998887765 6677888999887776654443
No 426
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=40.83 E-value=1.9e+02 Score=23.17 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=28.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
-.++|+.++|.-+|..|+-++.. .|.++..+|+....
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~k----rG~~v~~l~f~~g~ 213 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMR----RGSRVHYCFFNLGG 213 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHH----cCCEEEEEEEecCC
Confidence 35899999999999776544433 58899999998654
No 427
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=40.67 E-value=44 Score=22.38 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=30.4
Q ss_pred HhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCcc-ccce---eeccchhHHhcCCCccEEEEe
Q 031202 90 LSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGA-LKRV---LLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~-~~~~---~~gs~~~~v~~~~~~pVliv~ 157 (164)
+.+..|++.-.-.+..++.+....+++++++.++-++-..... +... .+-...+.++....-||+|.=
T Consensus 27 fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC 98 (164)
T PF03162_consen 27 FLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHC 98 (164)
T ss_dssp HHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-
T ss_pred HHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 3444576655545444566777778999999998888654332 1111 122233456667778998863
No 428
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=40.29 E-value=1.3e+02 Score=21.14 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHhcc-CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhh
Q 031202 15 PNSKAALRWAADNLID-SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRT 93 (164)
Q Consensus 15 ~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (164)
+..+.|++-|.++-.. +-..++.+++-+.. .++.+...-....+
T Consensus 40 PF~eIAvEEAvrlKEk~l~eeviavs~G~aq-----------------------------------s~~ilRt~LA~Gad 84 (254)
T KOG3180|consen 40 PFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQ-----------------------------------SQEILRTALAKGAD 84 (254)
T ss_pred chHHHHHHHHHhHhhhhhhheEEEEecCccc-----------------------------------hHHHHHHHHhccCC
Confidence 4567788888887553 23355555554432 23333333333334
Q ss_pred cCceEEEE---EeeC-ChhhHHHHHHHhcCCCEEEEeec
Q 031202 94 KGAKVVAK---VYWG-DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 94 ~~~~~~~~---v~~g-~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.++.++.. ..+- .++..+...++..+.|++++|..
T Consensus 85 r~~hv~~~~~~~lepl~vAKiLk~~vekek~~lVllGKQ 123 (254)
T KOG3180|consen 85 RGVHVEVVGAEELEPLHVAKILKKLVEKEKSDLVLLGKQ 123 (254)
T ss_pred ceeEEecCchhhccchHHHHHHHHHHHhhcCCEEEEccc
Confidence 45555532 1122 56788888999999999999953
No 429
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=40.29 E-value=31 Score=25.50 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=44.2
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEE
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv 156 (164)
.+.+.+.-+-.- +..-+...++++.|++.+..+|+.-+.+.....+ -.+......+.+++++||.+-
T Consensus 11 ~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 11 KAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 334444444433 3334889999999999999998887764433221 245667888999999999774
No 430
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=40.26 E-value=41 Score=26.24 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=9.0
Q ss_pred HHHHhccCCCeEEEEEE
Q 031202 24 AADNLIDSGDLIILIHV 40 (164)
Q Consensus 24 a~~la~~~~~~l~ll~v 40 (164)
|...+.....-+.++|-
T Consensus 15 A~~~~~~I~~~~~i~Hg 31 (426)
T cd01972 15 AFCILSGIRDAVVVQHG 31 (426)
T ss_pred HHHHHhccCCeEEEEeC
Confidence 34444445555666664
No 431
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=40.13 E-value=1.8e+02 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=27.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
-.++++.++|.-+|..++-++.. .|.++..+|+..
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 35899999999998776655544 478999999954
No 432
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=40.08 E-value=1.2e+02 Score=22.99 Aligned_cols=30 Identities=13% Similarity=0.043 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHhccC----C-CeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDS----G-DLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~----~-~~l~ll~v~~~~ 44 (164)
..+++.+++|+++|+.. + .+|+++|-...-
T Consensus 140 ~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl 174 (330)
T PRK14025 140 KASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVL 174 (330)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCeEEEEECCCch
Confidence 55788899999999876 3 468888766543
No 433
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=40.02 E-value=1.3e+02 Score=23.04 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHhccCC-CeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSG-DLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~-~~l~ll~v~~~~ 44 (164)
..+++.+++|+++|+..+ .+|+++|-...-
T Consensus 160 ~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl 190 (344)
T PRK03437 160 FGVERVVRDAFERAQKRPRKHLTLVHKTNVL 190 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEECCccc
Confidence 557888999999998774 568888876554
No 434
>PTZ00323 NAD+ synthase; Provisional
Probab=39.84 E-value=1.6e+02 Score=21.96 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=19.7
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhc
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLI 29 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~ 29 (164)
.++++|+++|.-+|.-++..+.+...
T Consensus 46 ~~~vVVglSGGVDSav~aaLa~~alg 71 (294)
T PTZ00323 46 LKGCVTSVSGGIDSAVVLALCARAMR 71 (294)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHhc
Confidence 57899999999888777766665433
No 435
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.82 E-value=45 Score=26.46 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEee------CChhhHHHHHHH-hcCCCEEEEeecCCc
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYW------GDPREKLCDAVE-DLKLDTLVVGSRGLG 131 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~------g~~~~~I~~~a~-~~~~dliv~g~~~~~ 131 (164)
.+++.+.+.+..+++..++-+.+.. |+=.+++.+.++ +.++.+|.+.+.|..
T Consensus 82 ~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 82 YEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 3455556666666666554443321 444566655544 678888888765543
No 436
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=39.57 E-value=1.2e+02 Score=22.83 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=44.5
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCC-ccEEEEe
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSS-CPVTVVK 157 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~-~pVliv~ 157 (164)
.+.+.+.-+-.- +..-+...++++.|++.+.-+|+..+.+.....+ -.+......++++++ +||.+-=
T Consensus 11 ~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHL 81 (307)
T PRK05835 11 KAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHL 81 (307)
T ss_pred HHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEEC
Confidence 344444444333 3344889999999999999999987665432211 123456677788886 9998753
No 437
>PRK07627 dihydroorotase; Provisional
Probab=39.57 E-value=77 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
..++..++.+|+..+++++++|+.....
T Consensus 212 ~~av~r~~~la~~~~~~~hi~HvSs~~~ 239 (425)
T PRK07627 212 TIALHTIFELMRVTGARVHLARLSSAAG 239 (425)
T ss_pred HHHHHHHHHHHHHHCCcEEEEeCCCHHH
Confidence 4588899999999999999999987653
No 438
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.49 E-value=1.5e+02 Score=21.69 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL 133 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~ 133 (164)
..+++..++...++++.......+..+.+.+..+..++|++++-..|++..
T Consensus 118 ~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~ 168 (270)
T PRK06731 118 TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYR 168 (270)
T ss_pred HHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcC
Confidence 444555566556665543211123344444444445789999988777654
No 439
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=39.46 E-value=1.2e+02 Score=23.48 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=23.5
Q ss_pred ChhhHHHHHHHHHHhccCCC-eEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSGD-LIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~-~l~ll~v~~~~ 44 (164)
...++..+++|+++|+..+. +|+++|-...-
T Consensus 183 r~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvl 214 (372)
T PLN00118 183 RQASLRVAEYAFHYAKTHGRKRVSAIHKANIM 214 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35678899999999988754 58888766554
No 440
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=39.38 E-value=64 Score=24.86 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.9
Q ss_pred cCCCEEEEeecC
Q 031202 118 LKLDTLVVGSRG 129 (164)
Q Consensus 118 ~~~dliv~g~~~ 129 (164)
.++.+|.+...+
T Consensus 117 ~~~~vi~v~t~g 128 (406)
T cd01967 117 LGIPVIPVNCEG 128 (406)
T ss_pred hCCCEEEEeCCC
Confidence 445555554443
No 441
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=39.21 E-value=1.3e+02 Score=20.91 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
......+.+.++..|..+.......++. ..+++.....++|-||+....... . . .-..+...++|++++-
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-~-----~-~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 15 AECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAAT-S-----P-ALDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCc-h-----H-HHHHHhhCCCCEEEEe
Confidence 4566677777777787776543333433 345555566788988885432110 0 1 2234556678877763
No 442
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=38.98 E-value=1.6e+02 Score=21.73 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=36.2
Q ss_pred ceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 96 AKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 96 ~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
+.+-..+.. +..+ ++.+++++.++|-+++-.........--+-.--..|+..++.||+++.
T Consensus 75 ~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 75 VPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 444443432 3333 466778999999998865533222111111234557778899999997
No 443
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=38.97 E-value=1.1e+02 Score=20.09 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=18.5
Q ss_pred EEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 8 GVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 8 Lv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
++...|+.-+-.+...+..+++. +.++.++...
T Consensus 5 ~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D 37 (173)
T cd03115 5 LVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAAD 37 (173)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcC
Confidence 33444555555666666666554 5566666543
No 444
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=38.93 E-value=32 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred hhhHHHHHHHhcCCCEEEEeec
Q 031202 107 PREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~ 128 (164)
-.+.|+++|++.++||+|+|..
T Consensus 51 ~~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 51 DHEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred CHHHHHHHHHHcCCCEEEECCc
Confidence 3689999999999999999975
No 445
>PRK14072 6-phosphofructokinase; Provisional
Probab=38.93 E-value=1.9e+02 Score=22.72 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=25.1
Q ss_pred CCCCcEEEEEecCChhh--HHHHHHHHHHhccCC--CeEEEEEE
Q 031202 1 MSKARTVGVGMDNSPNS--KAALRWAADNLIDSG--DLIILIHV 40 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s--~~al~~a~~la~~~~--~~l~ll~v 40 (164)
|| .++|+|.+.|.+.. -.++.-+.+-|...+ .+++.++-
T Consensus 1 ~~-~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~ 43 (416)
T PRK14072 1 MM-KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARN 43 (416)
T ss_pred CC-CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEec
Confidence 45 48999999886542 345555666666666 56665553
No 446
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=38.69 E-value=1.8e+02 Score=22.37 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=27.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+|+|+++|.-+|.- ++.+.+.-|-+|..++...-.
T Consensus 3 ~~kV~v~mSGGVDSSV----aA~lLk~QGyeViGl~m~~~~ 39 (356)
T COG0482 3 KKKVLVGMSGGVDSSV----AAYLLKEQGYEVIGLFMKNWD 39 (356)
T ss_pred CcEEEEEccCCHHHHH----HHHHHHHcCCeEEEEEEEeec
Confidence 4799999999877743 445556678899998886544
No 447
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=38.61 E-value=1.5e+02 Score=21.30 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......+++. ..+++.+...++|-||+.......... .. ..+.+.++||+.+-
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~-----~l-~~l~~~~ipvV~~~ 87 (288)
T cd01538 14 WIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALAS-----AV-EKAADAGIPVIAYD 87 (288)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHH-----HH-HHHHHCCCCEEEEC
Confidence 35667777778888888877643333443 455666667889999886532211111 11 23445678988885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 88 ~ 88 (288)
T cd01538 88 R 88 (288)
T ss_pred C
Confidence 4
No 448
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=38.60 E-value=1.1e+02 Score=22.29 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
++-++.+++..++.|+.+-++|.+-.-.+.+.++ +|+|=||.+.
T Consensus 59 eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-----vDilQIgArn 102 (258)
T TIGR01362 59 EEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-----VDIIQIPAFL 102 (258)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-----CcEEEeCchh
Confidence 4567788888888899999887665444444333 5888888754
No 449
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.50 E-value=1.9e+02 Score=22.45 Aligned_cols=26 Identities=15% Similarity=0.228 Sum_probs=20.7
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeC
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWG 105 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g 105 (164)
..+..+.|.+.+...|+.+..+...|
T Consensus 326 s~~~i~~F~~~L~~~gi~vtiR~s~G 351 (371)
T PRK14461 326 ERERVTTFQRILTDYGIPCTVRVERG 351 (371)
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCCC
Confidence 45677788888999999998776556
No 450
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=38.45 E-value=1e+02 Score=21.30 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=24.9
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+++|.|++.|.+....+++....| +..+-+++++-
T Consensus 2 ~~riivgisGASG~iygvrlLe~L-~~~~~e~hlvi 36 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVL-RELGVETHLVI 36 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHH-HhcCceEEEEE
Confidence 479999999999888887754444 44556666553
No 451
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=38.36 E-value=1.3e+02 Score=20.64 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHhhhcCceEEEEEee---CCh--------------hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC
Q 031202 86 ILDTLSRTKGAKVVAKVYW---GDP--------------REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN 148 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~---g~~--------------~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~ 148 (164)
.+...+++.|++....+.. |-| .+.=.+.+++++..++.+|.- ++.+. -.+..++++
T Consensus 53 dIt~~LRr~Gi~ts~lvLnaG~GvP~da~~~~~g~~fgl~~~E~~qI~~HklAV~h~GNv-k~hIi-----~K~r~ilr~ 126 (194)
T TIGR03264 53 EITYALREAGIQTSVLVLNAGSGIPPDAPRGGGGSTFGLTPEEIEQINRHKLAVIHLGNV-KSHII-----YKARLILKH 126 (194)
T ss_pred HHHHHHHHcCCccceEEEecCCCCCCcccccccccccCCCHHHHHHHhhcCEEEEEeCCH-HHHHH-----HHHHHHHhc
Confidence 4455666677777766543 211 133345677775555555533 22221 235668999
Q ss_pred CCccEEEEeCCC
Q 031202 149 SSCPVTVVKGNP 160 (164)
Q Consensus 149 ~~~pVliv~~~~ 160 (164)
.++|++|+-+.+
T Consensus 127 vdIP~IiVcq~P 138 (194)
T TIGR03264 127 VDIPAIIVCQAP 138 (194)
T ss_pred CCCCEEEEeCCC
Confidence 999999775543
No 452
>PRK08392 hypothetical protein; Provisional
Probab=38.30 E-value=1.4e+02 Score=20.82 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=44.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCcccc-ceeeccchhHHhcCCCcc
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALK-RVLLGSVSNHVVTNSSCP 152 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~-~~~~gs~~~~v~~~~~~p 152 (164)
...+++.+.+.+.|..++.-....-|...+++.+++.++ -+++|+..+..-. +. + ..+..+++++..+
T Consensus 137 ~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~vg~-~-~~a~~~~~~~g~~ 205 (215)
T PRK08392 137 EELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPEDVGN-V-SWSLKVFKKAGGK 205 (215)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHHCCc-H-HHHHHHHHHcCCC
Confidence 345566677777787776554445677889999999986 6899987655321 11 2 2466677776644
No 453
>PLN02527 aspartate carbamoyltransferase
Probab=38.18 E-value=1.7e+02 Score=21.88 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
|+......+....+ +|+||+.+.... ..+.+.+++.+||+=-
T Consensus 83 gEs~~Dta~vls~y-~D~iviR~~~~~---------~~~~~a~~~~vPVINa 124 (306)
T PLN02527 83 GETLEDTIRTVEGY-SDIIVLRHFESG---------AARRAAATAEIPVINA 124 (306)
T ss_pred CcCHHHHHHHHHHh-CcEEEEECCChh---------HHHHHHHhCCCCEEEC
Confidence 55566666666666 899999754332 3677888899997643
No 454
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=38.03 E-value=1.1e+02 Score=23.15 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=42.9
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc----eeeccchhHHhcCC--CccEEEEeC
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR----VLLGSVSNHVVTNS--SCPVTVVKG 158 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~----~~~gs~~~~v~~~~--~~pVliv~~ 158 (164)
.+.+.+.-+-.- +..-+...++++.|++.+.-+|+..+.+.....+ ..+.......++++ .+||.+-=+
T Consensus 18 ~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLD 93 (321)
T PRK07084 18 KAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLD 93 (321)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 344445544433 4445889999999999999999988765432221 11233345566666 688877433
No 455
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=37.98 E-value=94 Score=18.87 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=37.0
Q ss_pred HhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 90 LSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
++.+.|+.+.....-..-...|.+..++.++|++|-...+.... -.|......+-...+|++.
T Consensus 38 ~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~~---~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 38 YLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRAI---RDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCccC---ccHHHHHHHHHHhCCCEEe
Confidence 34456888765422212347799999999999999865433211 1233344445555677764
No 456
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=37.96 E-value=1.7e+02 Score=21.70 Aligned_cols=68 Identities=9% Similarity=-0.092 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEE------------eeCChhhHHHHHHHhcC--CCEEEEeecCCccccceeeccchhHHh
Q 031202 81 PEVLDILDTLSRTKGAKVVAKV------------YWGDPREKLCDAVEDLK--LDTLVVGSRGLGALKRVLLGSVSNHVV 146 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v------------~~g~~~~~I~~~a~~~~--~dliv~g~~~~~~~~~~~~gs~~~~v~ 146 (164)
..+.+.+.+.+.+.++.+...- ..|+..++|++..+... +++.++-+... .+..++
T Consensus 64 ~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~----------~~~~lA 133 (286)
T PRK13011 64 DALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP----------DLEPLA 133 (286)
T ss_pred HHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc----------cHHHHH
Confidence 4566667777777666554321 12577899999887764 56666655422 145568
Q ss_pred cCCCccEEEEeC
Q 031202 147 TNSSCPVTVVKG 158 (164)
Q Consensus 147 ~~~~~pVliv~~ 158 (164)
.+..+|+..++.
T Consensus 134 ~~~gIp~~~~~~ 145 (286)
T PRK13011 134 AWHGIPFHHFPI 145 (286)
T ss_pred HHhCCCEEEeCC
Confidence 888899888764
No 457
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=37.95 E-value=1.6e+02 Score=21.45 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=37.4
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC--c-cccceeecc-chhHHhcCCCccEEEEeCC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL--G-ALKRVLLGS-VSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~--~-~~~~~~~gs-~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+.+.+.|+++.. ..... +..+..+ +|.+++|...- + ..-.. .|+ ...-++++..+||+++-..
T Consensus 125 ~~a~~L~~~GI~vtl--i~Dsa---~~~~m~~--vd~VlvGAd~V~~nG~v~nk-vGT~~~Al~A~~~~vPv~V~~~s 194 (253)
T PRK06372 125 DMAKLLVKSGIDVVL--LTDAS---MCEAVLN--VDAVIVGSDSVLYDGGLIHK-NGTFPLALCARYLKKPFYSLTIS 194 (253)
T ss_pred HHHHHHHHCCCCEEE--EehhH---HHHHHHh--CCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcCCCEEEEeec
Confidence 344455567888764 23332 2223333 79999998752 2 22222 333 3444558888999998543
No 458
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.90 E-value=77 Score=24.58 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=4.4
Q ss_pred CCCeEEEEEE
Q 031202 31 SGDLIILIHV 40 (164)
Q Consensus 31 ~~~~l~ll~v 40 (164)
...-+.++|-
T Consensus 22 I~~~~~l~Hg 31 (410)
T cd01968 22 ITDAAHLVHG 31 (410)
T ss_pred cCcEEEEecC
Confidence 3444444443
No 459
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=37.89 E-value=68 Score=22.79 Aligned_cols=50 Identities=12% Similarity=0.314 Sum_probs=30.3
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
..++++.+.+.+.|.|++|....-.... +..+.. .+++...||++.|...
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v~-~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEK--TDTLIE-ALRRYGLPIILFPSNP 65 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHH--HHHHHH-HHhccCCCEEEeCCCc
Confidence 4457778888888999998653211111 122233 3445559999988654
No 460
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=37.88 E-value=39 Score=22.61 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
-..++.+-..++||+|+...++-...+.-+...... +-...+||++.
T Consensus 83 ~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~-A~~~giPVLt~ 129 (159)
T PF10649_consen 83 SAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAA-ALAAGIPVLTA 129 (159)
T ss_pred HHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHH-HHHCCCCEEEE
Confidence 444555666778999998776554433222222221 23456888875
No 461
>PRK03670 competence damage-inducible protein A; Provisional
Probab=37.76 E-value=1.5e+02 Score=21.49 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh---cCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED---LKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliv~g 126 (164)
+.-...+.+.+...|+++......+|-.+.|.+..+. ..+|+||+.
T Consensus 19 dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVItt 67 (252)
T PRK03670 19 DSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVIS 67 (252)
T ss_pred ehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEEC
Confidence 3445567777888899988766666656666666443 347988885
No 462
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=37.73 E-value=1.8e+02 Score=22.15 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
..++.++......++++-.+...........+.+.+.++|.|+++.++
T Consensus 173 ~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~G 220 (352)
T PRK05437 173 GWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAG 220 (352)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCC
Confidence 445566665555577777665422344577778888999999997654
No 463
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=37.63 E-value=1.3e+02 Score=22.36 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=43.8
Q ss_pred hhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-c-ceeeccchhHHhcCCC--ccEEEEe
Q 031202 91 SRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-K-RVLLGSVSNHVVTNSS--CPVTVVK 157 (164)
Q Consensus 91 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~-~~~~gs~~~~v~~~~~--~pVliv~ 157 (164)
+.+.+.-+-.- +..-+...++++.|++.+..+|+.-+.+.... . -..+......++++++ +||.+-=
T Consensus 13 A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHL 84 (286)
T PRK08610 13 AKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHL 84 (286)
T ss_pred HHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEEC
Confidence 34444433332 44458899999999999999999876654332 1 1224556777777887 7887743
No 464
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=37.28 E-value=66 Score=25.35 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=43.0
Q ss_pred hhhhhcCCCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEee
Q 031202 71 FSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~ 127 (164)
..++...+..++.++.+.+.++..|..+.+--...+..+.|.+.+++.+...|+.+.
T Consensus 40 ~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 40 EIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 345555566777888888888888888876333347778899999999889999974
No 465
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=37.17 E-value=1.2e+02 Score=20.02 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhc
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTK 94 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
..-+.+++.+.+.|+..+....++.+.+.+.... ..+..........+++ +.++..
T Consensus 19 ~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~-----------------------~~~~~~~~l~s~~ek~-~~l~~~ 74 (157)
T PF06574_consen 19 LGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVL-----------------------NPDKPPKLLTSLEEKL-ELLESL 74 (157)
T ss_dssp HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHH-----------------------SCTCCGGBSS-HHHHH-HHHHHT
T ss_pred HHHHHHHHHHhhhhhhcccceEEEEcccCHHHHh-----------------------cCCCcccCCCCHHHHH-HHHHHc
Confidence 3458899999999999999999999987763211 0000001111122222 233445
Q ss_pred CceEEEEEe-----eC-ChhhHHHHHHH-hcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVY-----WG-DPREKLCDAVE-DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~-----~g-~~~~~I~~~a~-~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
|+..-..+- .. ++.+=|..+.. ..++.-||+|..-+-+-.+.---....++.+.....|.+++.-
T Consensus 75 Gvd~~~~~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~ 146 (157)
T PF06574_consen 75 GVDYVIVIPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPV 146 (157)
T ss_dssp TESEEEEE-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---
T ss_pred CCCEEEEecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCE
Confidence 766544331 23 55555656555 8999999999764333222111112233333334788888753
No 466
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=37.02 E-value=75 Score=19.88 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCC-hhhHHHHHHHhcCCCEEEEeecC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGD-PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+-+.+++.+.+.|.++..+.+... +.+.+ ..-.-..+|++|+....
T Consensus 21 AAeaL~kAA~~~G~~i~VE~qg~~g~~~~l-t~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 21 AAERLEKLCQLEKWGVKIETQGALGTENRL-TDEDIRRADVVLLITDI 67 (114)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcCCCC-CHHHHHhCCEEEEEecC
Confidence 346677777888988887765543 23332 22223344888887654
No 467
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=37.01 E-value=1.6e+02 Score=21.28 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=60.1
Q ss_pred EEEEEecCChhhHHHHHHHHHHhc-cCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLI-DSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~-~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++|--+.+...++.|+..| ++|+ .++.++.=+-|+.+..+-. .+. -+.+
T Consensus 64 ~lLPNTaGc~tA~EAv~~A-~laRe~~~t~wIKLEVi~D~~~L~--------------PD~---------------~etl 113 (247)
T PF05690_consen 64 TLLPNTAGCRTAEEAVRTA-RLAREAFGTNWIKLEVIGDDKTLL--------------PDP---------------IETL 113 (247)
T ss_dssp EEEEE-TT-SSHHHHHHHH-HHHHHTTS-SEEEE--BS-TTT----------------B-H---------------HHHH
T ss_pred EECCcCCCCCCHHHHHHHH-HHHHHHcCCCeEEEEEeCCCCCcC--------------CCh---------------hHHH
Confidence 5666677888888888864 5555 4688999999998875321 011 1222
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEE-EeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLV-VGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv-~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
+.. +.+-..|+.+-. ....| -.+.+..++.+|..+- +|+. =+...+..-....+.+..++++||++
T Consensus 114 ~Aa-e~Lv~eGF~VlP-Y~~~D--~v~akrL~d~GcaavMPlgsP-IGSg~Gi~n~~~l~~i~~~~~vPvIv 180 (247)
T PF05690_consen 114 KAA-EILVKEGFVVLP-YCTDD--PVLAKRLEDAGCAAVMPLGSP-IGSGRGIQNPYNLRIIIERADVPVIV 180 (247)
T ss_dssp HHH-HHHHHTT-EEEE-EE-S---HHHHHHHHHTT-SEBEEBSSS-TTT---SSTHHHHHHHHHHGSSSBEE
T ss_pred HHH-HHHHHCCCEEee-cCCCC--HHHHHHHHHCCCCEEEecccc-cccCcCCCCHHHHHHHHHhcCCcEEE
Confidence 222 334456777765 33344 3466677777775543 3333 22222333345677788888999987
No 468
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=36.95 E-value=99 Score=20.86 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=18.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
||+|.+.++.....++ +......+..+.++.|+...
T Consensus 2 rI~~~~Sg~~~~~~~~---l~~l~~~~~~~~iv~Vit~~ 37 (181)
T PF00551_consen 2 RIVFFGSGSGSFLKAL---LEALKARGHNVEIVLVITNP 37 (181)
T ss_dssp EEEEEESSSSHHHHHH---HHHHHTTSSEEEEEEEEESS
T ss_pred EEEEEEcCCCHHHHHH---HHHHHhCCCCceEEEEeccc
Confidence 7888877776432222 22223344445566666554
No 469
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=36.93 E-value=2.2e+02 Score=22.84 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=42.5
Q ss_pred HHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC------CCccEEEE
Q 031202 84 LDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN------SSCPVTVV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~------~~~pVliv 156 (164)
.+.+...++..+++++...... .-+.++.+.+...++|.||+..-. +.+ ..+...++.+ .+.|+-++
T Consensus 132 ~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGD-GTl-----nEVvNGL~~~~~~~~~~~~pLGiI 205 (481)
T PLN02958 132 FDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGD-GIL-----VEVVNGLLEREDWKTAIKLPIGMV 205 (481)
T ss_pred HHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCC-CHH-----HHHHHHHhhCccccccccCceEEe
Confidence 3457777788888887655443 335666666666677877664322 212 2334445433 35899999
Q ss_pred eCCC
Q 031202 157 KGNP 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|-.+
T Consensus 206 PaGT 209 (481)
T PLN02958 206 PAGT 209 (481)
T ss_pred cCcC
Confidence 8654
No 470
>KOG2697 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=36.93 E-value=1.7e+02 Score=22.09 Aligned_cols=98 Identities=10% Similarity=0.004 Sum_probs=56.4
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhcc-CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLID-SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
....+||-.|..-+-.....-.+.-|.+ .+.++.++-|...... .+
T Consensus 243 GPSEVLVIADE~a~p~~vA~DLLSQAEHG~DSQviLv~V~lS~~~---------------------------------~~ 289 (446)
T KOG2697|consen 243 GPSEVLVIADEHASPVYVAADLLSQAEHGPDSQVILVVVGLSVDM---------------------------------LN 289 (446)
T ss_pred CCceEEEEecCCCChHHHHHHHHhHhhcCCCceEEEEEecCCHHH---------------------------------HH
Confidence 3567888888765544444444555554 5788998888766521 12
Q ss_pred hHHHHHHHHhhh--------cCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCcccc
Q 031202 82 EVLDILDTLSRT--------KGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALK 134 (164)
Q Consensus 82 ~~~~~~~~~~~~--------~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~ 134 (164)
.+.+.+.+++.+ ..+.-.+.|...+. ++-+++.+.+.+..+|+.-++.+.+.
T Consensus 290 ~Iq~ai~~qal~LpR~~i~~kai~hS~iV~~d~~-~eA~e~SNlYaPEHLil~vknA~~y~ 349 (446)
T KOG2697|consen 290 AIQEAIAKQALSLPRGEIASKAISHSFIVFADDM-IEAIEFSNLYAPEHLILNVKNAEKYE 349 (446)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhhhceEEEecCH-HHHHhhhhccCchhheeeccchhhhh
Confidence 222233333221 23344444555554 44567888888888888776655544
No 471
>PF13941 MutL: MutL protein
Probab=36.85 E-value=1.6e+02 Score=23.48 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=44.2
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVK 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~ 157 (164)
.+..++.+...|-++.. +..+...+.=++..++.++|+|++..---++-.... =.+++.+.... .+||++.-
T Consensus 90 a~AAk~AAlgAGA~V~~-v~s~~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~i-l~nA~~La~~~~~~pVIyAG 162 (457)
T PF13941_consen 90 AEAAKRAALGAGARVLQ-VYSYELTEEDLEEIREIRPDIILLAGGTDGGNKEVI-LHNAEMLAEANLRIPVIYAG 162 (457)
T ss_pred HHHHHHHHhcCCcEEEE-EeccCCCHHHHHHHhccCCCEEEEeCCccCCchHHH-HHHHHHHHhCCCCCcEEEEC
Confidence 33444555566777765 567777777778889999999999543222222222 23565555443 37777654
No 472
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=36.83 E-value=61 Score=21.99 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=29.9
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
..+-||+.|..+.+..+.+|..++ +..|.++++++-.
T Consensus 35 lDNTLv~wd~~~~tpe~~~W~~e~-k~~gi~v~vvSNn 71 (175)
T COG2179 35 LDNTLVPWDNPDATPELRAWLAEL-KEAGIKVVVVSNN 71 (175)
T ss_pred ccCceecccCCCCCHHHHHHHHHH-HhcCCEEEEEeCC
Confidence 456789999999999999998886 5578888887763
No 473
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=36.82 E-value=2e+02 Score=22.30 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=26.8
Q ss_pred CceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 95 GAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+..+-.++..++..+.+...+.+.++|+|++-..
T Consensus 203 ~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~ 236 (368)
T PF01645_consen 203 GKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGA 236 (368)
T ss_dssp TSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-T
T ss_pred CCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCC
Confidence 6888888888988888888889999999999543
No 474
>PRK03673 hypothetical protein; Provisional
Probab=36.70 E-value=2.1e+02 Score=22.41 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
+.-...+...+...|+++......+|-.+.|.+..++ ..+|+||+. -|-++... .-+.+.+++....|+..
T Consensus 20 dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~t-GGlGpt~d---D~t~~avA~a~g~~L~~ 92 (396)
T PRK03673 20 DTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVN-GGLGPTSD---DLSALAAATAAGEGLVL 92 (396)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEc-CCCCCCCc---ccHHHHHHHHcCCCcee
Confidence 3445667778888999998877777766667766544 357988874 22332221 22456666666666654
No 475
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=36.60 E-value=1.9e+02 Score=22.34 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHH---HHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDA---VEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~---a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
+-+.+.+.+.+...|+.+.. +..| .-.+++.+. +.+.++|.|| |--+-. .-+++..+.+...+|++++
T Consensus 43 ~~~~~~~~~~l~~~g~~~~~-~~~~~a~~~ev~~~~~~~~~~~~d~vI-GVGGGk------~iD~aK~~A~~~~~pfIsv 114 (360)
T COG0371 43 AIAGEKVEKSLKDEGLVVHV-VFVGEASEEEVERLAAEAGEDGADVVI-GVGGGK------TIDTAKAAAYRLGLPFISV 114 (360)
T ss_pred HHHHHHHHHHhcccCcceee-eecCccCHHHHHHHHHHhcccCCCEEE-EecCcH------HHHHHHHHHHHcCCCEEEe
Confidence 45566777777778874443 3333 334444444 4445566554 422211 1257899999999999999
Q ss_pred eCCCC
Q 031202 157 KGNPV 161 (164)
Q Consensus 157 ~~~~~ 161 (164)
|--+.
T Consensus 115 PT~AS 119 (360)
T COG0371 115 PTIAS 119 (360)
T ss_pred cCccc
Confidence 96443
No 476
>PLN02285 methionyl-tRNA formyltransferase
Probab=36.58 E-value=1.9e+02 Score=21.93 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=26.0
Q ss_pred HHHHhhhcCceEEEEEeeCC-hhhHHHHHHHhcCCCEEEEeecC
Q 031202 87 LDTLSRTKGAKVVAKVYWGD-PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+.+++.+.|+++.....-.. -.+++++..++.++|++|+...+
T Consensus 60 v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 103 (334)
T PLN02285 60 VAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYG 103 (334)
T ss_pred HHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCCEEEhhHhh
Confidence 44556667887442211121 23456777888899999987653
No 477
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=36.57 E-value=1.4e+02 Score=22.76 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHhccCCC-eEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGD-LIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~-~l~ll~v~~~~ 44 (164)
+.++..+++|+++|+..+. +|+++|-...-
T Consensus 145 ~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl 175 (333)
T TIGR00175 145 DKSERIARYAFEYARKNGRKKVTAVHKANIM 175 (333)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCccc
Confidence 5578889999999987754 58888876554
No 478
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=36.50 E-value=2.2e+02 Score=22.60 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeC--Ch---------hhHHHHHHHhcCCCEEEE
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWG--DP---------REKLCDAVEDLKLDTLVV 125 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g--~~---------~~~I~~~a~~~~~dliv~ 125 (164)
...++++.+-+.++..|+++.-.+..+ +| ...+++++...++-+|+=
T Consensus 208 itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 208 ITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred ccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEee
Confidence 345677777778888899999876543 23 467888899998766653
No 479
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=36.48 E-value=1.9e+02 Score=21.97 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC--cc-ccceeecc-chhHHhcCCCccEEEEeC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL--GA-LKRVLLGS-VSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~--~~-~~~~~~gs-~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.|+++... ..+ .+-......++|.+++|...- ++ .-.. .|+ ...-++++-.+|++++=+
T Consensus 189 a~eL~~~GI~vtlI--~Ds---a~~~~M~~~~Vd~VivGAd~I~aNG~v~NK-iGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 189 AWELAQEGIDHAII--ADN---AAGYFMRKKEIDLVIVGADRIASNGDFANK-IGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHHCCCCEEEE--ccc---HHHHHhhhcCCCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcCCCEEEecc
Confidence 44555678887742 333 333445566789999998642 21 2222 343 344455788899999844
No 480
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=36.46 E-value=1.9e+02 Score=24.99 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=38.4
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+++..+....+..|+++ .++.||..+.=-+.-....+|+++....
T Consensus 86 n~Di~~rL~~~~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPE 132 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTPE 132 (814)
T ss_pred HHHHHHHHHHHHHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeChh
Confidence 4678888888888889999 4889998888888888888898887543
No 481
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=36.37 E-value=1.5e+02 Score=20.64 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+.+.+.+.+.+.|.++.......++. ...++.....++|.||+...... ......+...+.||+.+-
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~--------~~~~~~~~~~~ipvv~~~ 85 (259)
T cd01542 14 TSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTIT--------DEHREAIKKLNVPVVVVG 85 (259)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--------HHHHHHHhcCCCCEEEEe
Confidence 35677777778888887776533333443 24455566678899988643211 112234455578888874
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 86 ~ 86 (259)
T cd01542 86 Q 86 (259)
T ss_pred c
Confidence 3
No 482
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.33 E-value=1.5e+02 Score=20.74 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
........+.+.+++.|..+......++. ....++.....++|-||+....... .. -.-+...+.||+.+
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~-------~~-~~~~~~~~ipvV~i 84 (270)
T cd06296 13 WASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS-------AQ-RAALRRTGIPFVVV 84 (270)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh-------HH-HHHHhcCCCCEEEE
Confidence 34667777778888888777654333333 3355666777889988876432211 11 23345567898888
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 85 ~~ 86 (270)
T cd06296 85 DP 86 (270)
T ss_pred ec
Confidence 54
No 483
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=36.24 E-value=43 Score=24.98 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCC
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGN 159 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~ 159 (164)
.+-.+.+.+.+++.++|.+|............ ........++.. .+|++.+-.+
T Consensus 272 ~~r~~~~~~~~~~~~~dgvi~~~~~~C~~~~~-~~~~l~~~~~~~~gIP~l~le~d 326 (349)
T PF06050_consen 272 ERRIEYIDDLIEKYGADGVIFHGHKGCDPYSY-DQPLLKEALREFLGIPVLFLEGD 326 (349)
T ss_dssp HCHHHHHHHHHHHTT-SEEEEEEETT-HHHHC-CHHHHHHHHHCCHT--EEEEEE-
T ss_pred HhHHHHHHHHHHHhCCCEEEEhHhcCCCcHHH-HHHHHHHHHHHhcCCCeEeeccc
Confidence 56788999999999999999987654432222 233456667777 9999998743
No 484
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=36.18 E-value=97 Score=18.48 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+...+++.+.+.|++++. ...+.. ++..++ .++|+|+.+..
T Consensus 19 ~~~ki~~~l~~~gi~~~v--~~~~~~-e~~~~~--~~~D~iv~t~~ 59 (94)
T PRK10310 19 AAEEIKELCQSHNIPVEL--IQCRVN-EIETYM--DGVHLICTTAR 59 (94)
T ss_pred HHHHHHHHHHHCCCeEEE--EEecHH-HHhhhc--CCCCEEEECCc
Confidence 356778888888998774 344433 344444 45799988754
No 485
>PRK07369 dihydroorotase; Provisional
Probab=36.00 E-value=91 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
..++..++.+|+..+++++++|+.....
T Consensus 213 ~~av~r~~~la~~~~~~~hi~HvSs~~~ 240 (418)
T PRK07369 213 TTALAALLELVAAIGTPVHLMRISTARS 240 (418)
T ss_pred HHHHHHHHHHHHHHCCcEEEEeCCCHHH
Confidence 4577888999999999999999987654
No 486
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.00 E-value=44 Score=25.78 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee------CChhhHHHHHHH-hcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW------GDPREKLCDAVE-DLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~------g~~~~~I~~~a~-~~~~dliv~g~~~~~ 131 (164)
+++.+.+.+..+....++-..+.. |+=.+.+++.++ +.++.+|.+.+.+..
T Consensus 73 ~~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v~t~gf~ 130 (396)
T cd01979 73 AELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVASASGLD 130 (396)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEeeCCCcc
Confidence 455556666666665554443222 544566666554 456777777665543
No 487
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.97 E-value=71 Score=25.06 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=38.2
Q ss_pred ChhhHHHHHHHh--cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 106 DPREKLCDAVED--LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 106 ~~~~~I~~~a~~--~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
.....|++..++ .++|.+|+.-++++.+.. -...-.++++...||+|=|+..
T Consensus 128 ~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~---~q~~I~~ar~~~~pVLvDPKg~ 181 (467)
T COG2870 128 EDENKLLEKIKNALKSFDALVLSDYAKGVLTN---VQKMIDLAREAGIPVLVDPKGK 181 (467)
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeccccccchh---HHHHHHHHHHcCCcEEECCCCc
Confidence 445666666666 677999999888876543 3456678889999999987654
No 488
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=35.97 E-value=68 Score=22.72 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=28.4
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEEEeCCCC
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTVVKGNPV 161 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVliv~~~~~ 161 (164)
...+.+.+.+.+.|.|++|....-. . -...+...+-+..+ .||++.|....
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~-~--~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS-S--TLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh-h--hHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4556677777788888888653211 1 12222332322333 88888886553
No 489
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=35.95 E-value=1.6e+02 Score=21.41 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.0
Q ss_pred hHHHHHHHhcCCCEEEEee
Q 031202 109 EKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~ 127 (164)
++|++.+...++|+|.+|-
T Consensus 151 ~~i~~~I~~s~pdil~Vgm 169 (253)
T COG1922 151 EAIVERIAASGPDILLVGM 169 (253)
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 5799999999999999983
No 490
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=35.94 E-value=1.9e+02 Score=21.73 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=28.3
Q ss_pred eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEE
Q 031202 104 WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVV 156 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv 156 (164)
.|+..+...+....+.+|+||+.+.... ..+.+... +.+||+--
T Consensus 86 kgEsl~Dtarvls~y~~D~iv~R~~~~~---------~~~~~a~~~~~vPvINa 130 (310)
T PRK13814 86 KGETLFDTIKTLEAMGVYFFIVRHSENE---------TPEQIAKQLSSGVVINA 130 (310)
T ss_pred CCCCHHHHHHHHHHhCCCEEEEeCCchh---------HHHHHHHhCCCCCeEEC
Confidence 3556666667777777899988754332 34455566 56887764
No 491
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.74 E-value=2.2e+02 Score=22.55 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+.+..++...++.+... .+ ...+.+.++..++|+|++-+.|++
T Consensus 269 eQLk~yAe~lgvp~~~~---~~-~~~l~~~l~~~~~D~VLIDTaGr~ 311 (432)
T PRK12724 269 EQLKRYADTMGMPFYPV---KD-IKKFKETLARDGSELILIDTAGYS 311 (432)
T ss_pred HHHHHHHHhcCCCeeeh---HH-HHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45555555556654321 11 234455555567777777665544
No 492
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=35.66 E-value=1.5e+02 Score=20.67 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..++...+.+.+.+.|..+......+++. ..+++.....++|-|++....... ..-.-+....+||+.+-
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~--------~~~~~~~~~~ipvV~~~ 85 (264)
T cd06274 14 FARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPD--------DPYYLCQKAGLPVVALD 85 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCch--------HHHHHHHhcCCCEEEec
Confidence 45666777777778888876654444443 456667778889988886432211 11223455678888885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 86 ~ 86 (264)
T cd06274 86 R 86 (264)
T ss_pred C
Confidence 4
No 493
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.65 E-value=1.4e+02 Score=20.06 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=25.3
Q ss_pred EEEEEeeCChhhHHHHHH---HhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 98 VVAKVYWGDPREKLCDAV---EDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 98 ~~~~v~~g~~~~~I~~~a---~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
++..+..++..+++...- ...++|.||-. |.++..+-++.+.||+-++.
T Consensus 10 ~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsR------------G~ta~~lr~~~~iPVV~I~~ 61 (176)
T PF06506_consen 10 AEIDVIEASLEEAVEEARQLLESEGADVIISR------------GGTAELLRKHVSIPVVEIPI 61 (176)
T ss_dssp SEEEEEE--HHHHHHHHHHHHTTTT-SEEEEE------------HHHHHHHHCC-SS-EEEE--
T ss_pred ceEEEEEecHHHHHHHHHHhhHhcCCeEEEEC------------CHHHHHHHHhCCCCEEEECC
Confidence 333366666555444433 44778887752 34566666777889988764
No 494
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=35.60 E-value=2.2e+02 Score=22.35 Aligned_cols=130 Identities=13% Similarity=0.162 Sum_probs=73.5
Q ss_pred HHhcc-CCCeEEEEEEeCCCCCcccccccccCCCCCCChhh-HHHhhhhhhhcCCCChhHHHHHHHHh---hhc-C---c
Q 031202 26 DNLID-SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEE-FREINFSKQYGLTSNPEVLDILDTLS---RTK-G---A 96 (164)
Q Consensus 26 ~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---~ 96 (164)
+||+. +.++|.-+-+.+.+.... .....|-....... ...-...+.+....-+.....++... .+. . -
T Consensus 170 rLA~a~~pA~VvsliiSDVpGDd~---~~IASGPTv~D~tt~~DAlavl~ry~i~~p~~v~~~l~~~~~~t~~~~d~~~~ 246 (422)
T COG2379 170 RLAAAAKPAKVVSLIISDVPGDDP---SVIASGPTVPDPTTREDALAVLERYGIALPESVRAHLESERAETPKPGDERFA 246 (422)
T ss_pred HHHHhcCCCeEEEEEEccCCCCCH---hhcccCCCCCCCCchHHHHHHHHHhcccccHHHHHHHhhhcccCCCCCccccc
Confidence 34443 457887777766654322 11122222222111 11122344444443444444444211 111 1 1
Q ss_pred eEEEEEe-eC-ChhhHHHHHHHhcCCCEEEEeecCCc--cccceeeccchhHHhcCC---CccEEEEeC
Q 031202 97 KVVAKVY-WG-DPREKLCDAVEDLKLDTLVVGSRGLG--ALKRVLLGSVSNHVVTNS---SCPVTVVKG 158 (164)
Q Consensus 97 ~~~~~v~-~g-~~~~~I~~~a~~~~~dliv~g~~~~~--~~~~~~~gs~~~~v~~~~---~~pVliv~~ 158 (164)
+++.++. .. ...+++..+++..++..+|++..=.+ +-...++.+.+.++.++- +.|++++-.
T Consensus 247 ~v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~asiarev~~~g~Pf~~P~~llsG 315 (422)
T COG2379 247 NVENRIIASNRLSLEAAASEARALGFKAVILGDTIEGEAREVGRVHASIAREVARRGRPFKKPVVLLSG 315 (422)
T ss_pred cceeEEEechHHHHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEC
Confidence 3444433 33 67899999999999999999975333 334567889999999998 699998853
No 495
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.52 E-value=1.7e+02 Score=21.02 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=32.2
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+...+.++|.|++....+.+...-..=.....+....++||+..-.
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GG 207 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGG 207 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCC
Confidence 356667778889998888543332221111124567788888999988653
No 496
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=35.45 E-value=63 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.381 Sum_probs=33.2
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC-Ccccc-ceeeccchhHHhcCCCccEEEEeC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG-LGALK-RVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~-~~~~~-~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.++.++.+++. |+||+|..+ .+++. -++++.+.+.+ +++..|++.+.+
T Consensus 178 ~a~~eaveAI~~A--D~IviGPgSl~TSIlP~Lllp~I~eaL-r~~~ap~i~v~n 229 (323)
T COG0391 178 SAAPEAVEAIKEA--DLIVIGPGSLFTSILPILLLPGIAEAL-RETVAPIVYVCN 229 (323)
T ss_pred CCCHHHHHHHHhC--CEEEEcCCccHhhhchhhchhHHHHHH-HhCCCCEEEecc
Confidence 4567888888887 999999643 33333 34555555544 448888887754
No 497
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=35.41 E-value=1.6e+02 Score=20.92 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=51.9
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++++.++|.++|-.|+-+| ...|-.|..+-...+....+ .+.+ ---.+
T Consensus 2 k~~aL~SGGKDS~~Al~~a----~~~G~eV~~Ll~~~p~~~dS-----~m~H-----------------------~~n~~ 49 (223)
T COG2102 2 KVIALYSGGKDSFYALYLA----LEEGHEVVYLLTVKPENGDS-----YMFH-----------------------TPNLE 49 (223)
T ss_pred cEEEEEecCcHHHHHHHHH----HHcCCeeEEEEEEecCCCCe-----eeee-----------------------ccchH
Confidence 5677888998886655554 44666555554444443211 0000 01123
Q ss_pred HHHHHhhhcCceEEEEEeeC---ChhhHHHHHHHhcCCCEEEEee
Q 031202 86 ILDTLSRTKGAKVVAKVYWG---DPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dliv~g~ 127 (164)
.+..+++.-|+++......| .-.+.+.+..+..++|.||.|.
T Consensus 50 ~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~Ga 94 (223)
T COG2102 50 LAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGA 94 (223)
T ss_pred HHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEch
Confidence 33444455577766544444 4567777788888888998885
No 498
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.32 E-value=1.7e+02 Score=21.09 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCcEEEEEecCChh-------------hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHH
Q 031202 2 SKARTVGVGMDNSPN-------------SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFRE 68 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~-------------s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (164)
|+.++|..++|-.+. ....++.|..+....=..++++-+....
T Consensus 1 m~~~~iipaiD~~~G~~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~~~------------------------ 56 (258)
T PRK01033 1 MLRPRIIPCLLLKDGGLVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVLDIDASK------------------------ 56 (258)
T ss_pred CCCcEEEEEEEEECCcEEEeecccCceeCCCHHHHHHHHHHcCCCEEEEEECCCCc------------------------
Q ss_pred hhhhhhhcCCCChhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEee
Q 031202 69 INFSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~ 127 (164)
.....-.+.+++.++..++++. +-.| .-.+.+.++. ..+++-+++|+
T Consensus 57 ---------~~~~~n~~~i~~i~~~~~~pv~--~gGGi~s~~d~~~l~-~~G~~~vvigs 104 (258)
T PRK01033 57 ---------RGSEPNYELIENLASECFMPLC--YGGGIKTLEQAKKIF-SLGVEKVSINT 104 (258)
T ss_pred ---------CCCcccHHHHHHHHHhCCCCEE--ECCCCCCHHHHHHHH-HCCCCEEEECh
No 499
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=35.28 E-value=1.9e+02 Score=21.71 Aligned_cols=28 Identities=25% Similarity=0.145 Sum_probs=20.6
Q ss_pred CCCcEEEEEecCChh-hHHHHHHHHHHhc
Q 031202 2 SKARTVGVGMDNSPN-SKAALRWAADNLI 29 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~-s~~al~~a~~la~ 29 (164)
+..|++|-..|.++. -...++.|..+=+
T Consensus 4 ~~~rhfL~l~D~t~~El~~ll~lA~~lK~ 32 (310)
T COG0078 4 LAGRHFLSLLDFTPEELEALLDLAAELKA 32 (310)
T ss_pred cccccccchhcCCHHHHHHHHHHHHHHHH
Confidence 356788888899874 5677888888744
No 500
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=35.23 E-value=99 Score=21.40 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=5.8
Q ss_pred ccCCCeEEEEEE
Q 031202 29 IDSGDLIILIHV 40 (164)
Q Consensus 29 ~~~~~~l~ll~v 40 (164)
+..+-++..+-.
T Consensus 25 ~~~g~~v~~~KP 36 (222)
T PRK00090 25 REAGYSVAGYKP 36 (222)
T ss_pred HHcCCceEEEee
Confidence 345555544443
Done!