Query 031202
Match_columns 164
No_of_seqs 107 out of 1796
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnj_A Universal stress protei 100.0 1.4E-29 4.9E-34 166.0 14.1 146 1-160 3-149 (150)
2 3s3t_A Nucleotide-binding prot 100.0 8.7E-30 3E-34 166.3 12.1 142 2-157 3-146 (146)
3 1mjh_A Protein (ATP-binding do 100.0 3.2E-29 1.1E-33 166.4 12.5 157 1-160 1-161 (162)
4 2dum_A Hypothetical protein PH 100.0 9.6E-29 3.3E-33 165.4 13.5 155 1-161 2-159 (170)
5 3hgm_A Universal stress protei 100.0 7.4E-29 2.5E-33 162.0 11.0 144 3-156 1-147 (147)
6 3idf_A USP-like protein; unive 100.0 2.4E-28 8E-33 158.1 13.0 136 4-157 1-138 (138)
7 3fg9_A Protein of universal st 100.0 7.8E-29 2.7E-33 163.6 10.3 140 1-157 12-156 (156)
8 1tq8_A Hypothetical protein RV 100.0 3.1E-28 1.1E-32 162.0 12.6 143 2-160 15-160 (163)
9 3dlo_A Universal stress protei 100.0 1.7E-28 5.7E-33 162.1 10.6 131 2-157 22-155 (155)
10 2z08_A Universal stress protei 100.0 4.3E-28 1.5E-32 156.8 10.3 136 3-157 1-137 (137)
11 2gm3_A Unknown protein; AT3G01 99.9 9.6E-27 3.3E-31 156.3 12.4 150 3-160 4-165 (175)
12 3olq_A Universal stress protei 99.9 1.2E-26 4.1E-31 169.2 11.6 149 1-161 4-153 (319)
13 3fdx_A Putative filament prote 99.9 6.5E-27 2.2E-31 152.1 9.1 138 4-157 1-143 (143)
14 1jmv_A USPA, universal stress 99.9 3E-26 1E-30 148.7 11.5 139 3-160 1-140 (141)
15 3mt0_A Uncharacterized protein 99.9 2.5E-25 8.6E-30 160.4 12.8 125 1-159 4-129 (290)
16 3loq_A Universal stress protei 99.9 8.1E-26 2.8E-30 163.2 7.7 144 1-160 19-164 (294)
17 3mt0_A Uncharacterized protein 99.9 7.8E-24 2.7E-28 152.6 11.8 137 3-159 133-277 (290)
18 1q77_A Hypothetical protein AQ 99.9 4.2E-24 1.4E-28 138.1 8.8 133 2-157 2-138 (138)
19 3cis_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 155.9 9.1 142 2-160 17-163 (309)
20 3ab8_A Putative uncharacterize 99.9 3E-24 1E-28 153.0 8.4 149 5-160 1-151 (268)
21 3loq_A Universal stress protei 99.9 3.7E-23 1.3E-27 149.3 13.1 124 3-160 169-292 (294)
22 3olq_A Universal stress protei 99.9 9E-23 3.1E-27 148.6 11.1 143 3-160 155-307 (319)
23 3cis_A Uncharacterized protein 99.9 2.6E-22 8.7E-27 145.8 10.3 136 3-159 170-307 (309)
24 3ab8_A Putative uncharacterize 99.8 4.1E-21 1.4E-25 136.8 9.2 116 3-157 153-268 (268)
25 2iel_A Hypothetical protein TT 97.6 0.0013 4.6E-08 41.1 9.4 129 4-156 1-133 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 96.6 0.02 6.8E-07 43.7 9.7 94 4-129 18-129 (464)
27 1wy5_A TILS, hypothetical UPF0 96.5 0.024 8.4E-07 40.9 9.5 93 4-128 24-134 (317)
28 1zun_A Sulfate adenylyltransfe 95.4 0.095 3.2E-06 38.1 8.2 92 4-129 46-156 (325)
29 3ih5_A Electron transfer flavo 95.4 0.059 2E-06 36.8 6.6 41 3-43 2-47 (217)
30 3g40_A Na-K-CL cotransporter; 95.0 0.64 2.2E-05 33.1 12.4 122 6-161 22-149 (294)
31 4b4k_A N5-carboxyaminoimidazol 94.9 0.25 8.7E-06 32.4 8.3 72 82-161 36-111 (181)
32 2xry_A Deoxyribodipyrimidine p 94.9 0.11 3.8E-06 39.7 7.6 110 18-158 52-161 (482)
33 1o97_C Electron transferring f 94.4 0.091 3.1E-06 37.0 5.6 31 12-42 34-66 (264)
34 1k92_A Argininosuccinate synth 94.2 1.1 3.9E-05 34.0 11.4 38 2-43 8-45 (455)
35 1efp_B ETF, protein (electron 94.1 0.14 4.9E-06 35.7 6.1 30 13-43 35-66 (252)
36 3k32_A Uncharacterized protein 94.1 0.64 2.2E-05 31.2 9.2 40 1-44 3-42 (203)
37 3oow_A Phosphoribosylaminoimid 94.1 0.52 1.8E-05 30.6 8.2 71 82-160 19-93 (166)
38 2nz2_A Argininosuccinate synth 93.7 0.74 2.5E-05 34.6 9.6 39 1-43 2-40 (413)
39 4grd_A N5-CAIR mutase, phospho 93.7 0.4 1.4E-05 31.3 7.1 71 82-160 26-100 (173)
40 1ni5_A Putative cell cycle pro 93.6 0.5 1.7E-05 35.6 8.8 66 4-101 13-79 (433)
41 2ywx_A Phosphoribosylaminoimid 93.6 0.68 2.3E-05 29.8 8.0 69 82-158 13-82 (157)
42 1efv_B Electron transfer flavo 93.6 0.11 3.7E-06 36.4 4.7 28 15-43 40-69 (255)
43 3kcq_A Phosphoribosylglycinami 93.5 1.1 3.6E-05 30.6 9.4 88 1-129 5-92 (215)
44 1sur_A PAPS reductase; assimil 93.4 1 3.5E-05 30.3 9.4 87 5-129 45-157 (215)
45 1xmp_A PURE, phosphoribosylami 93.3 0.78 2.7E-05 29.9 8.0 71 82-160 25-99 (170)
46 3kuu_A Phosphoribosylaminoimid 93.0 0.84 2.9E-05 29.9 7.9 71 82-160 26-100 (174)
47 3trh_A Phosphoribosylaminoimid 92.9 0.94 3.2E-05 29.5 8.0 71 82-160 20-94 (169)
48 3g40_A Na-K-CL cotransporter; 92.8 0.065 2.2E-06 38.1 2.6 101 16-158 177-277 (294)
49 3bl5_A Queuosine biosynthesis 92.6 1.5 5.2E-05 29.3 10.9 38 1-43 1-38 (219)
50 3umv_A Deoxyribodipyrimidine p 92.4 0.29 9.8E-06 37.8 5.9 83 18-125 53-135 (506)
51 3lp6_A Phosphoribosylaminoimid 92.4 0.82 2.8E-05 29.9 7.2 70 82-159 21-94 (174)
52 3zqu_A Probable aromatic acid 92.1 0.32 1.1E-05 32.9 5.3 38 1-39 1-38 (209)
53 1u11_A PURE (N5-carboxyaminoim 91.9 1 3.4E-05 29.7 7.2 71 82-160 35-109 (182)
54 2hma_A Probable tRNA (5-methyl 91.9 1.7 5.8E-05 32.1 9.4 96 4-129 9-133 (376)
55 3ors_A N5-carboxyaminoimidazol 91.8 1.2 4E-05 28.9 7.3 71 82-160 17-91 (163)
56 1o4v_A Phosphoribosylaminoimid 91.5 1.3 4.3E-05 29.3 7.4 71 82-160 27-101 (183)
57 2oq2_A Phosphoadenosine phosph 91.1 2.1 7.2E-05 29.8 8.8 40 4-44 41-80 (261)
58 3rjz_A N-type ATP pyrophosphat 91.0 2.5 8.5E-05 29.2 8.9 96 1-128 1-99 (237)
59 2ywb_A GMP synthase [glutamine 90.5 4 0.00014 31.4 10.5 35 5-43 210-244 (503)
60 2wsi_A FAD synthetase; transfe 90.5 2 7E-05 30.7 8.4 91 5-129 54-167 (306)
61 3rg8_A Phosphoribosylaminoimid 90.4 1.7 5.8E-05 28.0 7.1 71 82-160 16-91 (159)
62 2wq7_A RE11660P; lyase-DNA com 90.3 0.94 3.2E-05 35.2 7.0 129 6-159 30-162 (543)
63 3tqi_A GMP synthase [glutamine 90.0 0.86 2.9E-05 35.3 6.5 37 5-44 231-267 (527)
64 1iv0_A Hypothetical protein; r 89.9 0.86 2.9E-05 26.8 5.1 55 106-161 38-96 (98)
65 3p9x_A Phosphoribosylglycinami 89.4 3.6 0.00012 27.8 10.1 85 4-129 2-91 (211)
66 2dpl_A GMP synthetase, GMP syn 89.0 2.9 9.9E-05 30.0 8.3 37 5-44 21-57 (308)
67 2c5s_A THII, probable thiamine 88.4 4.3 0.00015 30.4 9.1 36 4-43 187-222 (413)
68 2der_A TRNA-specific 2-thiouri 88.0 4.3 0.00015 30.0 8.8 97 4-130 17-143 (380)
69 3da8_A Probable 5'-phosphoribo 87.4 5.1 0.00017 27.2 9.3 83 4-129 12-99 (215)
70 1np7_A DNA photolyase; protein 87.3 2.6 8.9E-05 32.3 7.5 130 5-158 6-137 (489)
71 1kor_A Argininosuccinate synth 86.7 7.7 0.00026 29.0 9.5 36 5-43 1-36 (400)
72 1vbk_A Hypothetical protein PH 86.0 6.5 0.00022 28.1 8.6 33 4-41 179-211 (307)
73 2o8v_A Phosphoadenosine phosph 86.0 6.6 0.00023 27.1 8.8 35 5-43 46-80 (252)
74 1g63_A Epidermin modifying enz 85.9 1.1 3.6E-05 29.7 4.1 36 4-40 2-37 (181)
75 2pg3_A Queuosine biosynthesis 85.6 6.5 0.00022 26.6 11.1 36 4-43 2-37 (232)
76 3nbm_A PTS system, lactose-spe 84.3 1.7 5.9E-05 26.0 4.2 65 82-158 21-86 (108)
77 2l69_A Rossmann 2X3 fold prote 84.2 4.4 0.00015 23.5 6.5 38 81-118 87-124 (134)
78 4ds3_A Phosphoribosylglycinami 84.2 7.5 0.00026 26.2 9.3 41 89-129 51-96 (209)
79 2ejb_A Probable aromatic acid 84.1 2.3 8E-05 28.2 5.2 34 5-39 2-35 (189)
80 3fy4_A 6-4 photolyase; DNA rep 84.0 1.2 4E-05 34.7 4.2 110 1-128 1-112 (537)
81 1ccw_A Protein (glutamate muta 83.7 5 0.00017 24.9 6.4 71 84-157 20-92 (137)
82 1owl_A Photolyase, deoxyribodi 83.3 7 0.00024 29.9 8.2 114 17-159 17-130 (484)
83 3tvs_A Cryptochrome-1; circadi 82.4 3.5 0.00012 32.1 6.3 85 19-127 20-107 (538)
84 2yxb_A Coenzyme B12-dependent 82.4 3.9 0.00013 26.3 5.6 71 84-157 35-107 (161)
85 3tqr_A Phosphoribosylglycinami 81.0 11 0.00036 25.6 9.8 83 5-129 6-93 (215)
86 2ywr_A Phosphoribosylglycinami 80.9 11 0.00036 25.5 9.6 62 88-158 44-110 (216)
87 3r7f_A Aspartate carbamoyltran 80.7 4.5 0.00016 29.0 5.9 59 87-154 54-118 (304)
88 2j4d_A Cryptochrome 3, cryptoc 80.0 17 0.00057 28.2 9.3 132 5-159 40-175 (525)
89 1vl2_A Argininosuccinate synth 79.8 17 0.00059 27.3 9.6 36 4-43 14-49 (421)
90 1y80_A Predicted cobalamin bin 79.4 5.6 0.00019 26.5 5.9 71 84-157 105-178 (210)
91 3dff_A Teicoplanin pseudoaglyc 78.9 14 0.00048 25.8 9.2 50 108-157 137-186 (273)
92 3o1l_A Formyltetrahydrofolate 78.8 16 0.00053 26.2 9.1 40 90-129 148-191 (302)
93 2i2x_B MTAC, methyltransferase 78.7 9.4 0.00032 26.5 7.0 71 84-157 140-211 (258)
94 2qv7_A Diacylglycerol kinase D 78.1 6.5 0.00022 28.3 6.3 74 81-160 41-116 (337)
95 2h31_A Multifunctional protein 77.5 5 0.00017 30.2 5.5 69 83-159 280-353 (425)
96 3nrb_A Formyltetrahydrofolate 77.4 13 0.00045 26.4 7.4 40 90-129 132-175 (287)
97 1p3y_1 MRSD protein; flavoprot 77.3 3.1 0.00011 27.7 4.0 35 4-39 8-42 (194)
98 3qjg_A Epidermin biosynthesis 77.2 4.4 0.00015 26.5 4.6 35 4-39 5-39 (175)
99 1meo_A Phosophoribosylglycinam 76.9 14 0.00049 24.8 10.1 84 5-129 1-89 (209)
100 1qv9_A F420-dependent methylen 76.8 2.9 9.8E-05 28.9 3.7 45 112-160 57-101 (283)
101 3s40_A Diacylglycerol kinase; 76.4 9.4 0.00032 27.1 6.6 73 81-160 25-99 (304)
102 2e0i_A 432AA long hypothetical 75.5 3 0.0001 31.5 3.9 111 19-159 17-127 (440)
103 1nu0_A Hypothetical protein YQ 75.4 1.5 5.1E-05 27.6 1.9 55 107-161 41-99 (138)
104 1gpm_A GMP synthetase, XMP ami 74.2 20 0.0007 27.7 8.3 37 5-44 228-264 (525)
105 2bon_A Lipid kinase; DAG kinas 73.8 11 0.00038 27.1 6.4 71 83-160 45-120 (332)
106 2l69_A Rossmann 2X3 fold prote 73.0 4.6 0.00016 23.4 3.4 50 81-131 12-62 (134)
107 2ehh_A DHDPS, dihydrodipicolin 72.9 16 0.00055 25.8 7.0 64 96-159 70-135 (294)
108 3fni_A Putative diflavin flavo 72.7 14 0.00047 23.4 6.1 50 80-131 18-68 (159)
109 3hly_A Flavodoxin-like domain; 72.7 15 0.00051 23.2 6.3 49 81-131 15-63 (161)
110 1xky_A Dihydrodipicolinate syn 72.7 19 0.00065 25.6 7.4 65 95-159 81-147 (301)
111 3grf_A Ornithine carbamoyltran 72.1 6.5 0.00022 28.5 4.8 43 102-154 84-126 (328)
112 1o5k_A DHDPS, dihydrodipicolin 72.0 19 0.00065 25.7 7.2 65 95-159 81-147 (306)
113 1pg5_A Aspartate carbamoyltran 71.6 16 0.00053 26.2 6.6 43 103-155 79-121 (299)
114 2ojp_A DHDPS, dihydrodipicolin 71.3 15 0.00051 26.0 6.6 64 95-158 70-135 (292)
115 2v9d_A YAGE; dihydrodipicolini 71.2 19 0.00063 26.2 7.1 65 95-159 100-166 (343)
116 1vhx_A Putative holliday junct 71.2 1.2 4E-05 28.5 0.7 55 106-160 42-100 (150)
117 3dm5_A SRP54, signal recogniti 71.0 32 0.0011 26.1 9.5 50 83-132 143-195 (443)
118 2yxg_A DHDPS, dihydrodipicolin 70.8 17 0.00057 25.7 6.7 64 96-159 70-135 (289)
119 3d0c_A Dihydrodipicolinate syn 70.7 18 0.00061 25.9 6.9 62 95-157 81-144 (314)
120 1sbz_A Probable aromatic acid 70.3 9.7 0.00033 25.4 5.1 34 6-39 2-35 (197)
121 3a5f_A Dihydrodipicolinate syn 70.3 16 0.00054 25.8 6.5 65 95-159 70-136 (291)
122 4f2g_A Otcase 1, ornithine car 69.9 7.6 0.00026 27.9 4.7 43 103-155 85-127 (309)
123 2q5c_A NTRC family transcripti 69.7 21 0.00072 23.6 7.9 64 81-158 14-78 (196)
124 2r8w_A AGR_C_1641P; APC7498, d 69.5 19 0.00064 26.1 6.8 64 95-158 103-168 (332)
125 3m5v_A DHDPS, dihydrodipicolin 69.4 21 0.00071 25.4 7.0 65 95-159 77-143 (301)
126 3cpr_A Dihydrodipicolinate syn 69.2 18 0.00061 25.8 6.6 65 95-159 85-151 (304)
127 3q0i_A Methionyl-tRNA formyltr 69.0 25 0.00086 25.3 7.3 42 86-129 54-95 (318)
128 3obi_A Formyltetrahydrofolate 68.6 28 0.00097 24.6 8.2 40 90-129 133-176 (288)
129 2vc6_A MOSA, dihydrodipicolina 68.6 17 0.00059 25.6 6.4 65 95-159 69-135 (292)
130 3grc_A Sensor protein, kinase; 68.5 16 0.00055 21.7 5.9 70 81-158 16-88 (140)
131 3i42_A Response regulator rece 68.3 15 0.00052 21.4 6.9 72 81-160 13-87 (127)
132 2pju_A Propionate catabolism o 68.1 25 0.00087 23.9 7.6 66 81-158 22-90 (225)
133 4a8t_A Putrescine carbamoyltra 68.0 11 0.00039 27.4 5.4 58 87-154 81-144 (339)
134 2j07_A Deoxyribodipyrimidine p 67.8 15 0.00051 27.5 6.2 73 80-159 50-122 (420)
135 3ezx_A MMCP 1, monomethylamine 67.7 11 0.00037 25.4 5.0 70 84-156 109-183 (215)
136 3to5_A CHEY homolog; alpha(5)b 67.0 19 0.00066 22.1 5.8 72 81-159 22-96 (134)
137 3ecs_A Translation initiation 66.4 34 0.0012 24.6 8.2 63 88-158 165-231 (315)
138 3auf_A Glycinamide ribonucleot 66.2 28 0.00097 23.7 10.3 42 88-129 65-111 (229)
139 1f6k_A N-acetylneuraminate lya 65.8 16 0.00055 25.8 5.8 64 95-158 73-138 (293)
140 2rfg_A Dihydrodipicolinate syn 65.6 18 0.0006 25.7 6.0 64 96-159 70-135 (297)
141 2hmc_A AGR_L_411P, dihydrodipi 64.7 25 0.00087 25.6 6.7 65 95-159 92-160 (344)
142 3m9w_A D-xylose-binding peripl 64.6 32 0.0011 23.8 9.9 75 79-159 16-92 (313)
143 3kht_A Response regulator; PSI 64.3 20 0.0007 21.4 6.2 73 81-159 15-90 (144)
144 1jkx_A GART;, phosphoribosylgl 64.3 30 0.001 23.3 10.3 42 88-129 43-89 (212)
145 1wpw_A 3-isopropylmalate dehyd 63.9 28 0.00095 25.3 6.7 31 14-44 143-173 (336)
146 3l21_A DHDPS, dihydrodipicolin 63.4 30 0.001 24.6 6.9 64 95-158 84-149 (304)
147 3av3_A Phosphoribosylglycinami 63.4 31 0.0011 23.1 9.9 43 87-129 45-92 (212)
148 3tpf_A Otcase, ornithine carba 63.4 6.6 0.00022 28.2 3.3 59 87-155 54-118 (307)
149 1dnp_A DNA photolyase; DNA rep 63.4 8.8 0.0003 29.3 4.2 49 80-128 54-104 (471)
150 3mcu_A Dipicolinate synthase, 63.1 11 0.00037 25.4 4.2 36 3-39 4-40 (207)
151 2zki_A 199AA long hypothetical 63.0 12 0.0004 24.4 4.4 43 1-43 1-43 (199)
152 3vmk_A 3-isopropylmalate dehyd 62.8 17 0.00057 27.0 5.4 29 15-43 179-207 (375)
153 1qzu_A Hypothetical protein MD 62.4 8.8 0.0003 25.8 3.7 36 4-39 19-54 (206)
154 2a5l_A Trp repressor binding p 62.0 12 0.00039 24.4 4.2 41 1-42 3-44 (200)
155 2wkj_A N-acetylneuraminate lya 61.9 19 0.00065 25.6 5.6 64 95-158 80-146 (303)
156 2l2q_A PTS system, cellobiose- 61.8 22 0.00075 20.9 5.1 42 82-129 19-61 (109)
157 3lou_A Formyltetrahydrofolate 61.5 41 0.0014 23.9 10.5 83 4-129 95-181 (292)
158 3egc_A Putative ribose operon 61.4 36 0.0012 23.3 9.6 72 81-160 24-97 (291)
159 2nuw_A 2-keto-3-deoxygluconate 61.2 31 0.0011 24.3 6.5 54 106-159 76-132 (288)
160 3h5i_A Response regulator/sens 61.2 24 0.0008 21.1 8.5 74 81-160 15-88 (140)
161 2r91_A 2-keto-3-deoxy-(6-phosp 61.0 35 0.0012 24.0 6.8 54 106-159 75-131 (286)
162 1w3i_A EDA, 2-keto-3-deoxy glu 60.9 33 0.0011 24.2 6.6 54 106-159 76-132 (293)
163 3tak_A DHDPS, dihydrodipicolin 60.8 32 0.0011 24.3 6.5 64 96-159 71-136 (291)
164 3ayv_A Putative uncharacterize 60.5 17 0.00059 24.5 5.1 80 18-119 75-154 (254)
165 2hy5_B Intracellular sulfur ox 60.4 11 0.00038 23.4 3.7 40 3-43 4-47 (136)
166 3n0v_A Formyltetrahydrofolate 60.3 42 0.0014 23.7 10.5 40 90-129 133-176 (286)
167 1u3d_A Cryptochrome 1 apoprote 60.2 30 0.001 26.6 6.7 76 80-159 63-139 (509)
168 3l4e_A Uncharacterized peptida 60.0 13 0.00045 24.8 4.2 45 81-127 43-87 (206)
169 3uow_A GMP synthetase; structu 59.7 55 0.0019 25.5 8.2 38 4-44 255-292 (556)
170 3jy6_A Transcriptional regulat 59.6 38 0.0013 23.0 9.3 70 81-159 23-94 (276)
171 3l49_A ABC sugar (ribose) tran 59.6 39 0.0013 23.0 6.9 73 81-159 21-95 (291)
172 3gd5_A Otcase, ornithine carba 59.1 13 0.00044 26.9 4.2 42 103-154 88-129 (323)
173 1efv_A Electron transfer flavo 59.1 26 0.00087 25.2 5.8 33 7-43 4-41 (315)
174 3kl4_A SRP54, signal recogniti 58.7 56 0.0019 24.6 8.6 49 84-132 141-192 (433)
175 1js1_X Transcarbamylase; alpha 58.5 12 0.00039 27.2 3.9 47 107-154 92-139 (324)
176 3udu_A 3-isopropylmalate dehyd 58.1 21 0.00072 26.3 5.2 29 15-43 167-195 (361)
177 3flk_A Tartrate dehydrogenase/ 58.0 34 0.0012 25.2 6.3 31 14-44 165-196 (364)
178 1xrs_A D-lysine 5,6-aminomutas 57.9 28 0.00095 26.4 5.8 48 95-142 150-200 (516)
179 3rot_A ABC sugar transporter, 57.8 43 0.0015 23.0 7.6 73 81-159 19-95 (297)
180 3eb2_A Putative dihydrodipicol 57.7 48 0.0016 23.5 7.7 67 95-161 73-141 (300)
181 3dzc_A UDP-N-acetylglucosamine 57.1 52 0.0018 24.1 7.4 38 3-40 24-61 (396)
182 3d6n_B Aspartate carbamoyltran 57.1 20 0.00068 25.5 4.9 60 87-155 52-118 (291)
183 3qze_A DHDPS, dihydrodipicolin 57.1 32 0.0011 24.6 6.0 64 96-159 93-158 (314)
184 2gkg_A Response regulator homo 57.0 25 0.00087 20.1 6.0 68 82-156 16-86 (127)
185 3r8w_A 3-isopropylmalate dehyd 57.0 26 0.00088 26.3 5.6 29 15-43 207-235 (405)
186 3o1i_D Periplasmic protein TOR 56.8 44 0.0015 22.8 8.5 70 81-157 21-94 (304)
187 2yvk_A Methylthioribose-1-phos 56.3 58 0.002 24.1 7.7 66 88-158 226-294 (374)
188 2xxa_A Signal recognition part 55.9 63 0.0021 24.3 9.4 28 17-44 114-141 (433)
189 3u1h_A 3-isopropylmalate dehyd 55.8 36 0.0012 25.3 6.2 29 15-43 186-214 (390)
190 3f6p_A Transcriptional regulat 55.7 27 0.00093 20.1 7.4 69 82-158 13-81 (120)
191 1t9k_A Probable methylthioribo 55.7 57 0.002 23.8 8.3 66 88-158 201-269 (347)
192 3dfi_A Pseudoaglycone deacetyl 55.7 49 0.0017 23.0 10.0 51 107-157 133-183 (270)
193 1x0l_A Homoisocitrate dehydrog 55.5 50 0.0017 24.0 6.8 31 14-44 143-174 (333)
194 2ixd_A LMBE-related protein; h 55.2 47 0.0016 22.7 11.1 98 1-129 1-107 (242)
195 2ef0_A Ornithine carbamoyltran 55.1 55 0.0019 23.4 9.0 59 87-155 63-127 (301)
196 3dbi_A Sugar-binding transcrip 55.1 52 0.0018 23.1 8.3 72 81-159 79-152 (338)
197 1cnz_A IPMDH, IMDH, protein (3 54.9 27 0.00092 25.7 5.4 31 14-44 169-199 (363)
198 3l6u_A ABC-type sugar transpor 54.8 47 0.0016 22.6 9.0 73 81-159 24-98 (293)
199 3qi7_A Putative transcriptiona 54.6 62 0.0021 23.9 8.5 93 6-128 14-120 (371)
200 3lqk_A Dipicolinate synthase s 54.5 18 0.00063 24.1 4.2 35 4-39 7-42 (201)
201 3hs3_A Ribose operon repressor 54.4 48 0.0016 22.5 8.1 66 81-159 26-94 (277)
202 3iwt_A 178AA long hypothetical 54.3 40 0.0014 21.6 6.1 46 81-126 39-88 (178)
203 3qk7_A Transcriptional regulat 53.8 51 0.0017 22.6 9.0 71 81-159 26-97 (294)
204 1a05_A IPMDH, IMDH, 3-isopropy 53.8 32 0.0011 25.3 5.6 31 14-44 164-194 (358)
205 1mvl_A PPC decarboxylase athal 53.2 22 0.00074 23.9 4.4 34 4-39 19-52 (209)
206 2y3z_A 3-isopropylmalate dehyd 53.1 31 0.001 25.4 5.4 30 15-44 163-192 (359)
207 3gv0_A Transcriptional regulat 53.0 51 0.0018 22.5 7.9 72 80-159 25-98 (288)
208 4f2d_A L-arabinose isomerase; 53.0 43 0.0015 25.8 6.4 46 108-159 60-106 (500)
209 3bul_A Methionine synthase; tr 52.9 26 0.0009 27.6 5.3 71 84-157 115-186 (579)
210 3gxq_A Putative regulator of t 52.8 17 0.00058 17.7 2.7 26 97-122 11-37 (54)
211 1vlc_A 3-isopropylmalate dehyd 52.8 31 0.0011 25.4 5.4 31 14-44 173-203 (366)
212 3hv2_A Response regulator/HD d 52.8 36 0.0012 20.6 6.0 71 81-159 24-95 (153)
213 3b4u_A Dihydrodipicolinate syn 52.7 27 0.00092 24.7 5.0 63 96-158 73-141 (294)
214 3uug_A Multiple sugar-binding 52.2 56 0.0019 22.7 8.1 73 81-159 19-93 (330)
215 3sds_A Ornithine carbamoyltran 52.2 67 0.0023 23.5 9.1 59 87-155 84-148 (353)
216 1w0d_A 3-isopropylmalate dehyd 51.7 30 0.001 25.1 5.2 31 14-44 153-183 (337)
217 3p52_A NH(3)-dependent NAD(+) 51.6 56 0.0019 22.4 8.1 38 3-43 25-62 (249)
218 2ohh_A Type A flavoprotein FPR 51.5 67 0.0023 23.3 8.8 49 81-131 271-319 (404)
219 3flu_A DHDPS, dihydrodipicolin 51.3 61 0.0021 22.9 8.9 64 96-159 77-142 (297)
220 3h5d_A DHDPS, dihydrodipicolin 51.3 64 0.0022 23.0 7.0 64 96-159 77-143 (311)
221 3e61_A Putative transcriptiona 51.3 53 0.0018 22.1 6.6 69 81-159 24-95 (277)
222 2amj_A Modulator of drug activ 50.6 45 0.0015 22.0 5.7 48 81-130 33-81 (204)
223 2a0u_A Initiation factor 2B; S 50.5 74 0.0025 23.6 8.4 66 88-158 230-298 (383)
224 3s5o_A 4-hydroxy-2-oxoglutarat 50.5 61 0.0021 23.0 6.7 64 96-159 84-151 (307)
225 1y5e_A Molybdenum cofactor bio 50.3 47 0.0016 21.2 6.4 46 81-126 30-79 (169)
226 1e5d_A Rubredoxin\:oxygen oxid 50.0 71 0.0024 23.2 9.2 49 81-131 267-315 (402)
227 2i6u_A Otcase, ornithine carba 50.0 14 0.00047 26.6 3.1 58 87-154 57-120 (307)
228 3na8_A Putative dihydrodipicol 49.8 34 0.0012 24.5 5.2 64 96-159 94-159 (315)
229 1zq6_A Otcase, ornithine carba 49.6 75 0.0026 23.3 8.2 48 105-154 112-161 (359)
230 1ml4_A Aspartate transcarbamoy 49.5 27 0.00091 25.1 4.6 41 105-155 87-127 (308)
231 2is8_A Molybdopterin biosynthe 49.5 48 0.0016 21.1 6.0 46 81-126 20-69 (164)
232 2lpm_A Two-component response 49.3 23 0.00079 21.4 3.7 67 84-158 21-87 (123)
233 2r48_A Phosphotransferase syst 49.3 14 0.00049 22.0 2.6 45 83-129 21-67 (106)
234 3inp_A D-ribulose-phosphate 3- 49.3 20 0.00068 24.8 3.8 44 84-128 182-225 (246)
235 3en0_A Cyanophycinase; serine 49.1 26 0.00088 24.9 4.4 33 6-38 27-62 (291)
236 3pm6_A Putative fructose-bisph 49.0 16 0.00055 26.2 3.3 67 90-156 21-88 (306)
237 2nwr_A 2-dehydro-3-deoxyphosph 49.0 66 0.0022 22.5 9.2 67 81-159 61-127 (267)
238 3cg4_A Response regulator rece 48.8 39 0.0013 19.9 6.9 71 81-159 17-90 (142)
239 3a11_A Translation initiation 48.7 53 0.0018 23.8 6.1 65 87-158 184-251 (338)
240 2kyr_A Fructose-like phosphotr 48.6 17 0.00057 21.9 2.9 47 82-129 23-70 (111)
241 1xng_A NH(3)-dependent NAD(+) 48.6 64 0.0022 22.2 6.7 37 4-43 25-61 (268)
242 1x92_A APC5045, phosphoheptose 48.4 26 0.00088 22.8 4.2 37 4-41 113-149 (199)
243 3si9_A DHDPS, dihydrodipicolin 48.4 40 0.0014 24.1 5.4 65 95-159 91-157 (315)
244 3k4h_A Putative transcriptiona 48.3 61 0.0021 22.0 7.3 72 80-159 28-101 (292)
245 2d1p_B TUSC, hypothetical UPF0 48.3 15 0.00051 22.0 2.7 39 4-43 1-43 (119)
246 1jx7_A Hypothetical protein YC 48.2 39 0.0013 19.6 5.2 40 5-44 2-46 (117)
247 3gl9_A Response regulator; bet 48.2 38 0.0013 19.5 6.0 70 82-159 13-85 (122)
248 2yva_A DNAA initiator-associat 47.9 26 0.0009 22.6 4.2 37 4-41 109-145 (196)
249 1n8f_A DAHP synthetase; (beta/ 47.7 80 0.0027 23.1 9.8 129 6-159 53-189 (350)
250 2bw0_A 10-FTHFDH, 10-formyltet 47.4 77 0.0026 22.8 7.2 60 89-157 66-128 (329)
251 1jq5_A Glycerol dehydrogenase; 47.4 64 0.0022 23.5 6.5 70 83-160 46-120 (370)
252 4e0q_A COP9 signalosome comple 47.2 32 0.0011 21.5 4.2 55 106-160 70-124 (141)
253 3e96_A Dihydrodipicolinate syn 47.0 43 0.0015 23.9 5.4 63 95-158 81-145 (316)
254 2goy_A Adenosine phosphosulfat 46.8 37 0.0013 23.7 4.9 35 5-44 55-89 (275)
255 3blx_A Isocitrate dehydrogenas 46.8 74 0.0025 23.3 6.6 31 14-44 156-187 (349)
256 2j48_A Two-component sensor ki 46.7 37 0.0013 19.0 6.8 71 82-160 12-85 (119)
257 2zay_A Response regulator rece 46.6 44 0.0015 19.8 6.2 69 83-159 20-91 (147)
258 3lfh_A Manxa, phosphotransfera 46.6 51 0.0017 20.6 5.9 41 1-44 1-41 (144)
259 3daq_A DHDPS, dihydrodipicolin 46.2 39 0.0013 23.8 5.0 65 95-159 71-137 (292)
260 2qjg_A Putative aldolase MJ040 46.2 48 0.0016 22.8 5.5 68 83-158 133-210 (273)
261 3h75_A Periplasmic sugar-bindi 46.2 75 0.0026 22.4 8.7 73 81-160 20-96 (350)
262 2ppv_A Uncharacterized protein 46.1 18 0.00063 26.2 3.3 50 106-158 166-217 (332)
263 4ekn_B Aspartate carbamoyltran 46.0 36 0.0012 24.4 4.8 40 105-154 83-122 (306)
264 4ep1_A Otcase, ornithine carba 45.9 41 0.0014 24.5 5.1 43 103-155 110-152 (340)
265 3gt7_A Sensor protein; structu 45.9 48 0.0016 20.1 7.6 71 81-159 17-90 (154)
266 1q74_A 1D-MYO-inosityl 2-aceta 45.7 78 0.0027 22.4 7.8 19 107-125 117-135 (303)
267 4f3r_A Phosphopantetheine aden 45.3 57 0.002 20.8 9.7 47 81-133 52-98 (162)
268 3kbq_A Protein TA0487; structu 45.2 60 0.0021 21.0 5.8 48 79-126 20-69 (172)
269 2m1z_A LMO0427 protein; homolo 45.2 12 0.00042 22.2 1.9 46 83-130 21-68 (106)
270 2ffh_A Protein (FFH); SRP54, s 45.1 96 0.0033 23.3 9.8 22 111-132 172-193 (425)
271 1t5o_A EIF2BD, translation ini 44.9 89 0.003 22.8 7.1 65 89-158 200-266 (351)
272 3m47_A Orotidine 5'-phosphate 44.8 70 0.0024 21.6 6.0 37 1-42 9-45 (228)
273 8abp_A L-arabinose-binding pro 44.7 72 0.0025 21.8 6.5 71 81-158 18-90 (306)
274 2o2z_A Hypothetical protein; s 44.4 21 0.00071 25.9 3.3 50 106-158 167-218 (323)
275 2p0y_A Hypothetical protein LP 44.0 19 0.00066 26.2 3.2 50 106-158 177-228 (341)
276 3ksm_A ABC-type sugar transpor 43.8 70 0.0024 21.4 7.5 73 81-159 16-93 (276)
277 2wte_A CSA3; antiviral protein 43.6 76 0.0026 21.7 9.2 86 4-124 8-98 (244)
278 1tk9_A Phosphoheptose isomeras 43.2 35 0.0012 21.8 4.2 39 4-43 110-148 (188)
279 1mkz_A Molybdenum cofactor bio 43.2 64 0.0022 20.7 5.7 45 82-126 28-76 (172)
280 3g1w_A Sugar ABC transporter; 43.0 78 0.0027 21.7 8.2 74 80-159 19-95 (305)
281 4a8p_A Putrescine carbamoyltra 43.0 45 0.0015 24.5 4.9 58 87-154 59-122 (355)
282 2d1c_A Isocitrate dehydrogenas 43.0 83 0.0028 24.3 6.5 30 15-44 165-195 (496)
283 3o3m_A Alpha subunit 2-hydroxy 42.6 14 0.00047 27.5 2.3 55 106-160 321-375 (408)
284 2xhz_A KDSD, YRBH, arabinose 5 42.6 34 0.0012 21.7 4.0 39 4-43 96-134 (183)
285 4edg_A DNA primase; catalytic 42.6 27 0.00093 25.3 3.8 35 5-39 196-230 (329)
286 3blx_B Isocitrate dehydrogenas 42.6 81 0.0028 23.1 6.2 31 14-44 162-193 (354)
287 2r4q_A Phosphotransferase syst 42.5 14 0.00048 22.0 1.9 45 83-129 21-67 (106)
288 1uf3_A Hypothetical protein TT 42.4 29 0.00099 22.7 3.8 7 151-157 64-70 (228)
289 3sho_A Transcriptional regulat 42.4 39 0.0013 21.6 4.3 39 4-43 87-125 (187)
290 3heb_A Response regulator rece 42.0 55 0.0019 19.6 6.3 74 81-159 14-98 (152)
291 3zxs_A Cryptochrome B, rscryb; 41.8 53 0.0018 25.5 5.4 69 82-159 67-140 (522)
292 1qkk_A DCTD, C4-dicarboxylate 41.6 56 0.0019 19.6 5.0 69 82-158 14-83 (155)
293 3q94_A Fructose-bisphosphate a 41.5 31 0.0011 24.5 3.9 67 90-156 15-86 (288)
294 3hzh_A Chemotaxis response reg 41.4 58 0.002 19.7 6.5 72 81-159 46-120 (157)
295 3cnb_A DNA-binding response re 41.3 53 0.0018 19.2 6.5 71 81-159 18-93 (143)
296 3rfq_A Pterin-4-alpha-carbinol 41.3 73 0.0025 20.9 5.8 47 80-126 47-96 (185)
297 3tdn_A FLR symmetric alpha-bet 41.2 52 0.0018 22.3 4.9 48 109-156 38-85 (247)
298 2rgy_A Transcriptional regulat 41.0 83 0.0028 21.4 7.1 70 81-158 24-98 (290)
299 2yvq_A Carbamoyl-phosphate syn 40.9 26 0.00088 21.8 3.1 41 89-129 61-106 (143)
300 3brs_A Periplasmic binding pro 40.9 82 0.0028 21.3 6.5 72 81-158 23-98 (289)
301 3ty4_A Probable homoisocitrate 40.9 69 0.0024 23.6 5.7 29 15-43 162-203 (366)
302 3h1g_A Chemotaxis protein CHEY 40.8 52 0.0018 19.1 6.9 72 82-159 16-90 (129)
303 1gvf_A Tagatose-bisphosphate a 40.6 23 0.0008 25.1 3.1 65 92-156 14-80 (286)
304 3exr_A RMPD (hexulose-6-phosph 40.5 31 0.0011 23.3 3.6 32 4-40 5-36 (221)
305 3ipr_A PTS system, IIA compone 40.4 63 0.0021 20.2 4.9 88 5-128 2-97 (150)
306 1tjy_A Sugar transport protein 40.3 91 0.0031 21.7 7.3 73 81-159 19-94 (316)
307 1w2w_B 5-methylthioribose-1-ph 40.3 18 0.00063 23.9 2.4 63 90-158 25-93 (191)
308 1mb3_A Cell division response 40.3 51 0.0017 18.7 6.4 69 82-158 12-83 (124)
309 3vkj_A Isopentenyl-diphosphate 40.2 70 0.0024 23.5 5.7 48 83-130 175-222 (368)
310 3vzx_A Heptaprenylglyceryl pho 40.1 35 0.0012 23.3 3.8 48 110-160 22-69 (228)
311 2q7x_A UPF0052 protein SP_1565 39.8 22 0.00075 25.8 2.9 49 107-158 174-224 (326)
312 1vp8_A Hypothetical protein AF 39.8 45 0.0015 22.3 4.1 77 80-158 28-106 (201)
313 3o74_A Fructose transport syst 39.7 82 0.0028 21.0 9.4 72 81-159 18-91 (272)
314 3w01_A Heptaprenylglyceryl pho 39.7 40 0.0014 23.2 4.0 48 110-160 27-74 (235)
315 2au3_A DNA primase; zinc ribbo 39.4 46 0.0016 24.7 4.7 35 5-39 288-322 (407)
316 2xbl_A Phosphoheptose isomeras 39.4 39 0.0013 21.8 4.0 39 4-43 116-154 (198)
317 1dd9_A DNA primase, DNAG; topr 39.4 78 0.0027 22.9 5.8 36 5-40 207-245 (338)
318 3trj_A Phosphoheptose isomeras 39.3 43 0.0015 22.0 4.2 41 4-45 114-154 (201)
319 3jr2_A Hexulose-6-phosphate sy 39.3 29 0.001 23.1 3.4 36 88-123 76-113 (218)
320 1i60_A IOLI protein; beta barr 39.0 78 0.0027 21.3 5.7 79 18-120 83-166 (278)
321 2vk2_A YTFQ, ABC transporter p 38.9 93 0.0032 21.4 7.8 71 82-158 19-91 (306)
322 1m3s_A Hypothetical protein YC 38.9 51 0.0017 21.0 4.4 38 4-42 79-116 (186)
323 3fkr_A L-2-keto-3-deoxyarabona 38.8 75 0.0025 22.6 5.6 64 95-159 77-146 (309)
324 3hcw_A Maltose operon transcri 38.8 92 0.0031 21.3 7.3 72 80-159 27-100 (295)
325 3elf_A Fructose-bisphosphate a 38.6 39 0.0013 24.7 4.1 72 88-159 13-96 (349)
326 2x0k_A Riboflavin biosynthesis 38.6 1.1E+02 0.0038 22.1 7.0 30 15-44 29-58 (338)
327 3jvd_A Transcriptional regulat 38.6 1E+02 0.0034 21.7 6.8 64 81-158 80-144 (333)
328 3cg0_A Response regulator rece 38.5 59 0.002 19.0 7.4 72 82-159 20-91 (140)
329 2q62_A ARSH; alpha/beta, flavo 38.3 86 0.0029 21.5 5.7 49 81-131 51-110 (247)
330 2g2c_A Putative molybdenum cof 38.3 76 0.0026 20.2 5.4 44 83-126 26-76 (167)
331 2f6u_A GGGPS, (S)-3-O-geranylg 37.9 37 0.0013 23.2 3.7 55 102-159 12-70 (234)
332 3t8y_A CHEB, chemotaxis respon 37.8 70 0.0024 19.6 6.8 71 82-158 36-106 (164)
333 3pzy_A MOG; ssgcid, seattle st 37.7 58 0.002 20.7 4.4 45 81-126 26-73 (164)
334 2pcq_A Putative dihydrodipicol 37.6 64 0.0022 22.6 5.0 63 95-159 62-127 (283)
335 1jeo_A MJ1247, hypothetical pr 37.6 51 0.0018 20.8 4.3 39 4-43 82-120 (180)
336 1oth_A Protein (ornithine tran 37.5 24 0.00083 25.5 2.8 58 87-154 64-127 (321)
337 1k68_A Phytochrome response re 37.3 61 0.0021 18.8 5.8 73 81-159 12-94 (140)
338 1pvv_A Otcase, ornithine carba 37.2 26 0.00089 25.2 2.9 59 87-155 64-128 (315)
339 3kjx_A Transcriptional regulat 37.0 1.1E+02 0.0037 21.5 7.8 69 80-156 83-153 (344)
340 2h0a_A TTHA0807, transcription 36.7 89 0.0031 20.9 5.7 70 81-158 15-86 (276)
341 2w37_A Ornithine carbamoyltran 36.7 52 0.0018 24.2 4.5 60 86-155 84-149 (359)
342 3n53_A Response regulator rece 36.7 64 0.0022 18.9 5.7 69 82-159 14-85 (140)
343 3eod_A Protein HNR; response r 36.7 62 0.0021 18.6 7.8 71 82-160 18-89 (130)
344 2qvg_A Two component response 36.6 65 0.0022 18.9 5.3 73 81-159 17-98 (143)
345 3qxc_A Dethiobiotin synthetase 36.6 60 0.002 22.2 4.6 38 2-39 19-57 (242)
346 4fe7_A Xylose operon regulator 36.6 86 0.0029 22.9 5.8 66 81-158 40-105 (412)
347 3miz_A Putative transcriptiona 36.6 1E+02 0.0034 21.1 8.6 68 82-158 31-100 (301)
348 3q9s_A DNA-binding response re 36.5 95 0.0033 20.8 6.9 71 81-159 47-117 (249)
349 3ctl_A D-allulose-6-phosphate 36.4 44 0.0015 22.7 3.9 45 83-128 153-198 (231)
350 2qr3_A Two-component system re 36.3 64 0.0022 18.8 5.4 70 82-158 14-88 (140)
351 3huu_A Transcription regulator 36.2 1E+02 0.0035 21.1 7.1 73 80-160 42-116 (305)
352 3qfe_A Putative dihydrodipicol 36.1 89 0.003 22.3 5.6 66 95-161 80-150 (318)
353 3cu2_A Ribulose-5-phosphate 3- 36.1 56 0.0019 22.3 4.4 44 84-128 174-219 (237)
354 3rag_A Uncharacterized protein 36.0 1.1E+02 0.0036 21.2 6.2 39 4-43 10-49 (242)
355 2rjn_A Response regulator rece 36.0 71 0.0024 19.1 5.9 69 82-158 18-87 (154)
356 3tb6_A Arabinose metabolism tr 36.0 1E+02 0.0034 20.9 9.0 77 80-159 30-108 (298)
357 3kip_A 3-dehydroquinase, type 35.9 88 0.003 20.2 6.4 72 78-157 39-116 (167)
358 3iv3_A Tagatose 1,6-diphosphat 35.5 1.3E+02 0.0043 21.9 8.1 79 81-159 146-254 (332)
359 3lua_A Response regulator rece 35.5 59 0.002 19.1 4.2 72 81-159 14-90 (140)
360 1vr6_A Phospho-2-dehydro-3-deo 35.4 1.3E+02 0.0044 22.0 9.3 104 17-159 119-222 (350)
361 2uyg_A 3-dehydroquinate dehydr 35.4 85 0.0029 19.9 7.1 73 78-157 24-99 (149)
362 3cvj_A Putative phosphoheptose 35.3 34 0.0012 23.1 3.2 37 4-41 108-144 (243)
363 1k66_A Phytochrome response re 35.3 69 0.0024 18.8 4.9 73 81-159 16-101 (149)
364 2q9u_A A-type flavoprotein; fl 35.2 1.3E+02 0.0044 21.9 9.9 50 81-132 271-320 (414)
365 1wdn_A GLNBP, glutamine bindin 35.1 86 0.0029 19.9 5.3 40 84-126 29-68 (226)
366 1uan_A Hypothetical protein TT 35.1 1E+02 0.0035 20.7 9.7 46 83-128 51-104 (227)
367 1vim_A Hypothetical protein AF 35.1 36 0.0012 22.2 3.2 39 4-43 89-127 (200)
368 1u0t_A Inorganic polyphosphate 34.9 56 0.0019 23.1 4.4 38 1-38 1-39 (307)
369 2i2w_A Phosphoheptose isomeras 34.9 40 0.0014 22.2 3.5 39 4-43 131-169 (212)
370 3kzn_A Aotcase, N-acetylornith 34.8 1.2E+02 0.004 22.2 6.1 36 120-155 126-162 (359)
371 3hbl_A Pyruvate carboxylase; T 34.8 88 0.003 26.9 6.1 39 1-44 1-39 (1150)
372 3k9c_A Transcriptional regulat 34.8 1.1E+02 0.0037 20.8 9.2 69 81-158 27-96 (289)
373 3t6k_A Response regulator rece 34.7 70 0.0024 18.7 6.9 70 82-159 15-87 (136)
374 4hqo_A Sporozoite surface prot 34.5 56 0.0019 22.4 4.3 39 5-43 127-165 (266)
375 4dad_A Putative pilus assembly 34.4 69 0.0024 18.9 4.4 72 81-159 30-104 (146)
376 1o97_D Electron transferring f 34.3 1.3E+02 0.0044 21.6 8.9 37 6-43 2-44 (320)
377 1uqr_A 3-dehydroquinate dehydr 34.0 92 0.0031 19.8 6.7 73 78-157 26-100 (154)
378 3o3m_B Beta subunit 2-hydroxya 33.9 34 0.0012 25.2 3.2 53 106-159 300-352 (385)
379 3c3m_A Response regulator rece 33.8 73 0.0025 18.7 6.6 70 82-159 14-86 (138)
380 2ioy_A Periplasmic sugar-bindi 33.6 1.1E+02 0.0038 20.7 7.9 72 81-158 17-90 (283)
381 1s8n_A Putative antiterminator 33.5 93 0.0032 19.8 7.6 69 82-157 24-92 (205)
382 1gtz_A 3-dehydroquinate dehydr 33.1 96 0.0033 19.8 5.3 74 77-157 30-106 (156)
383 2d1p_A TUSD, hypothetical UPF0 33.1 87 0.003 19.4 4.7 37 6-43 14-55 (140)
384 4amu_A Ornithine carbamoyltran 32.9 1E+02 0.0036 22.6 5.6 59 86-154 88-152 (365)
385 3gbv_A Putative LACI-family tr 32.9 1.1E+02 0.0039 20.6 6.3 73 81-159 25-103 (304)
386 1fo5_A Thioredoxin; disulfide 32.8 42 0.0014 17.7 2.9 43 1-43 1-43 (85)
387 1dxh_A Ornithine carbamoyltran 32.6 32 0.0011 25.0 2.8 60 86-155 62-127 (335)
388 2xdq_A Light-independent proto 32.6 22 0.00076 26.8 2.1 70 81-150 83-159 (460)
389 1byk_A Protein (trehalose oper 32.5 1.1E+02 0.0037 20.2 7.9 48 81-128 18-67 (255)
390 2xgg_A Microneme protein 2; A/ 32.5 58 0.002 20.6 3.9 40 5-44 124-163 (178)
391 3u7q_B Nitrogenase molybdenum- 32.3 1.7E+02 0.006 22.6 7.5 28 102-129 421-448 (523)
392 1uuy_A CNX1, molybdopterin bio 32.3 97 0.0033 19.6 5.6 32 95-126 43-78 (167)
393 3dx5_A Uncharacterized protein 32.2 48 0.0016 22.7 3.7 78 18-119 83-163 (286)
394 4hqf_A Thrombospondin-related 32.1 77 0.0026 21.8 4.7 39 5-43 130-168 (281)
395 2w6r_A Imidazole glycerol phos 32.0 80 0.0027 21.5 4.7 48 109-156 33-80 (266)
396 3kke_A LACI family transcripti 31.6 1.3E+02 0.0043 20.7 8.8 71 80-159 30-103 (303)
397 3u0h_A Xylose isomerase domain 31.5 71 0.0024 21.6 4.5 76 20-120 85-171 (281)
398 1h05_A 3-dehydroquinate dehydr 31.5 99 0.0034 19.5 6.5 73 78-157 27-101 (146)
399 3hdv_A Response regulator; PSI 31.5 79 0.0027 18.3 7.5 71 82-159 18-90 (136)
400 3lwz_A 3-dehydroquinate dehydr 31.3 1E+02 0.0035 19.6 6.2 73 77-157 31-106 (153)
401 1xw8_A UPF0271 protein YBGL; N 31.3 1.1E+02 0.0038 21.2 5.2 100 11-129 30-141 (252)
402 3rpe_A MDAB, modulator of drug 31.3 1.2E+02 0.0041 20.4 5.3 47 81-129 46-93 (218)
403 1p6q_A CHEY2; chemotaxis, sign 31.2 77 0.0026 18.1 4.4 69 82-158 17-89 (129)
404 3h5o_A Transcriptional regulat 30.8 1.4E+02 0.0047 20.9 9.1 71 80-158 77-149 (339)
405 1gqo_A Dehydroquinase; dehydra 30.7 1E+02 0.0035 19.4 8.1 74 77-157 24-99 (143)
406 4fs3_A Enoyl-[acyl-carrier-pro 30.6 96 0.0033 21.0 4.9 39 1-40 1-40 (256)
407 2jba_A Phosphate regulon trans 30.6 54 0.0018 18.7 3.3 69 82-158 13-84 (127)
408 1vlv_A Otcase, ornithine carba 30.5 32 0.0011 24.9 2.5 58 87-154 76-139 (325)
409 1fmt_A Methionyl-tRNA FMet for 30.4 96 0.0033 22.2 5.0 41 86-129 50-91 (314)
410 2pln_A HP1043, response regula 30.4 84 0.0029 18.3 6.4 67 81-159 28-95 (137)
411 1vb5_A Translation initiation 30.2 1.4E+02 0.0048 20.8 8.3 63 92-161 157-222 (276)
412 4f3p_A Glutamine-binding perip 30.1 1.2E+02 0.004 19.9 5.6 41 83-126 49-89 (249)
413 3nvt_A 3-deoxy-D-arabino-heptu 30.0 1.7E+02 0.0058 21.7 7.7 82 17-130 155-236 (385)
414 3n0v_A Formyltetrahydrofolate 29.9 1.5E+02 0.005 20.9 6.7 68 81-158 65-146 (286)
415 1ycg_A Nitric oxide reductase; 29.9 1.6E+02 0.0053 21.3 10.2 49 81-131 266-314 (398)
416 2h3h_A Sugar ABC transporter, 29.9 1.4E+02 0.0047 20.6 7.6 72 81-158 16-90 (313)
417 3ih5_A Electron transfer flavo 29.7 1.2E+02 0.004 20.3 5.1 21 108-128 80-100 (217)
418 3g3k_A Glutamate receptor, ion 29.7 70 0.0024 21.2 4.1 43 83-125 36-88 (259)
419 1dbq_A Purine repressor; trans 29.7 1.3E+02 0.0044 20.2 9.2 72 81-159 23-96 (289)
420 1vzw_A Phosphoribosyl isomeras 29.7 1.3E+02 0.0043 20.2 5.9 49 109-157 149-197 (244)
421 1b93_A Protein (methylglyoxal 29.7 60 0.0021 20.6 3.4 34 94-128 56-91 (152)
422 2qxy_A Response regulator; reg 29.3 89 0.003 18.3 6.6 70 81-159 14-84 (142)
423 1v7p_C Integrin alpha-2; snake 29.3 45 0.0015 21.5 2.9 36 5-40 110-145 (200)
424 3nhm_A Response regulator; pro 29.2 86 0.0029 18.0 6.9 68 83-159 16-86 (133)
425 3d8u_A PURR transcriptional re 29.1 1.3E+02 0.0044 20.1 6.4 70 81-158 19-90 (275)
426 4e7p_A Response regulator; DNA 29.0 95 0.0032 18.5 7.9 73 81-159 30-103 (150)
427 2v5b_A Triosephosphate isomera 29.0 1E+02 0.0034 21.3 4.7 25 106-131 69-93 (244)
428 3of5_A Dethiobiotin synthetase 29.0 74 0.0025 21.4 4.0 36 3-38 3-39 (228)
429 1k77_A EC1530, hypothetical pr 29.0 72 0.0025 21.3 4.1 23 17-39 83-105 (260)
430 2fyw_A Conserved hypothetical 29.0 46 0.0016 23.2 3.0 30 98-127 38-67 (267)
431 3n7t_A Macrophage binding prot 28.9 96 0.0033 21.2 4.6 38 4-41 9-57 (247)
432 1h5y_A HISF; histidine biosynt 28.9 72 0.0025 21.3 4.0 49 109-157 157-205 (253)
433 1vdd_A Recombination protein R 28.8 1E+02 0.0034 21.1 4.5 38 3-40 133-170 (228)
434 3dz1_A Dihydrodipicolinate syn 28.6 1.3E+02 0.0043 21.4 5.4 75 82-159 65-143 (313)
435 2rjo_A Twin-arginine transloca 28.5 1.2E+02 0.0042 21.1 5.3 73 81-159 21-97 (332)
436 3kzg_A Arginine 3RD transport 28.5 1.2E+02 0.0039 19.7 5.0 42 82-126 29-70 (237)
437 2y88_A Phosphoribosyl isomeras 28.4 95 0.0033 20.7 4.6 48 109-157 152-200 (244)
438 2pbq_A Molybdenum cofactor bio 28.4 1.2E+02 0.0041 19.5 6.2 44 82-126 25-75 (178)
439 2bln_A Protein YFBG; transfera 28.4 88 0.003 22.2 4.5 41 87-129 45-85 (305)
440 3f6c_A Positive transcription 28.4 89 0.003 18.0 7.9 73 81-160 11-84 (134)
441 3ctl_A D-allulose-6-phosphate 28.4 1.1E+02 0.0037 20.8 4.8 43 84-128 95-137 (231)
442 3rjz_A N-type ATP pyrophosphat 28.3 1.4E+02 0.0049 20.3 5.6 49 80-129 101-149 (237)
443 3bbl_A Regulatory protein of L 28.3 1.4E+02 0.0048 20.2 7.8 71 80-158 23-95 (287)
444 3o6p_A Peptide ABC transporter 28.2 1.3E+02 0.0044 19.7 6.5 46 81-129 112-159 (229)
445 3cvo_A Methyltransferase-like 28.2 53 0.0018 21.9 3.1 49 80-128 60-131 (202)
446 2qu7_A Putative transcriptiona 28.2 1.4E+02 0.0048 20.1 8.3 68 81-158 23-92 (288)
447 3lvu_A ABC transporter, peripl 28.2 1.4E+02 0.0047 20.0 5.9 45 82-129 143-187 (258)
448 3mtq_A Putative phosphoenolpyr 28.2 1.2E+02 0.004 19.3 4.9 38 3-42 20-57 (159)
449 1jbe_A Chemotaxis protein CHEY 28.0 88 0.003 17.8 5.9 70 82-159 15-88 (128)
450 3bil_A Probable LACI-family tr 28.0 1.6E+02 0.0054 20.8 6.6 70 81-158 82-153 (348)
451 2b4a_A BH3024; flavodoxin-like 27.8 94 0.0032 18.1 6.1 69 81-157 25-95 (138)
452 3etn_A Putative phosphosugar i 27.7 83 0.0028 20.9 4.1 39 4-43 106-146 (220)
453 3vk5_A MOEO5; TIM barrel, tran 27.6 40 0.0014 23.9 2.5 46 111-157 58-104 (286)
454 1tqx_A D-ribulose-5-phosphate 27.6 1.4E+02 0.0049 20.1 6.5 60 84-143 100-162 (227)
455 3n8k_A 3-dehydroquinate dehydr 27.6 1.3E+02 0.0044 19.5 6.9 74 76-157 51-127 (172)
456 3klj_A NAD(FAD)-dependent dehy 27.5 61 0.0021 23.6 3.7 41 81-128 188-228 (385)
457 3kbr_A Cyclohexadienyl dehydra 27.4 93 0.0032 20.1 4.4 42 83-127 41-82 (239)
458 3vdp_A Recombination protein R 27.2 1.2E+02 0.0039 20.5 4.6 38 3-40 149-186 (212)
459 3txv_A Probable tagatose 6-pho 27.2 79 0.0027 24.0 4.2 48 106-153 32-86 (450)
460 4dz1_A DALS D-alanine transpor 27.2 1.4E+02 0.0047 19.8 5.7 40 84-126 56-95 (259)
461 1pt6_A Integrin alpha-1; cell 27.1 65 0.0022 21.0 3.5 37 5-41 111-147 (213)
462 2dri_A D-ribose-binding protei 27.1 1.4E+02 0.0049 19.9 7.5 72 81-158 17-90 (271)
463 2fn9_A Ribose ABC transporter, 27.0 1.5E+02 0.005 20.0 9.0 72 81-158 18-91 (290)
464 2xdq_B Light-independent proto 27.0 35 0.0012 26.3 2.3 18 24-41 19-36 (511)
465 1xrs_B D-lysine 5,6-aminomutas 27.0 1.1E+02 0.0037 21.4 4.6 24 105-128 166-189 (262)
466 2x7x_A Sensor protein; transfe 27.0 1.6E+02 0.0054 20.4 6.4 71 82-158 22-95 (325)
467 2vzf_A NADH-dependent FMN redu 26.9 93 0.0032 20.1 4.2 38 5-42 3-44 (197)
468 1duv_G Octase-1, ornithine tra 26.9 31 0.0011 25.0 1.9 58 87-154 62-125 (333)
469 3ilh_A Two component response 26.7 1E+02 0.0034 18.0 7.1 72 82-159 20-101 (146)
470 2vxo_A GMP synthase [glutamine 26.7 2.5E+02 0.0086 22.6 7.6 37 5-44 241-278 (697)
471 2b2x_A Integrin alpha-1; compu 26.6 70 0.0024 21.0 3.6 38 5-42 126-163 (223)
472 3clk_A Transcription regulator 26.4 1.5E+02 0.0052 20.0 7.5 70 81-158 24-96 (290)
473 1f76_A Dihydroorotate dehydrog 26.4 1.8E+02 0.006 20.7 7.0 47 82-128 192-247 (336)
474 3e3m_A Transcriptional regulat 26.4 1.7E+02 0.0059 20.6 9.0 69 81-157 86-156 (355)
475 3sm9_A Mglur3, metabotropic gl 26.3 2.1E+02 0.0071 21.5 10.4 34 6-39 187-220 (479)
476 1qpz_A PURA, protein (purine n 26.2 1.7E+02 0.0058 20.4 8.4 71 81-158 74-146 (340)
477 3sz8_A 2-dehydro-3-deoxyphosph 26.2 1.1E+02 0.0039 21.6 4.6 66 81-158 77-142 (285)
478 4h31_A Otcase, ornithine carba 26.1 47 0.0016 24.4 2.8 41 105-155 112-152 (358)
479 1lst_A Lysine, arginine, ornit 26.1 1.1E+02 0.0037 19.7 4.5 40 84-126 31-70 (239)
480 2fvy_A D-galactose-binding per 26.1 1.6E+02 0.0053 20.0 8.6 73 81-159 18-93 (309)
481 3nkl_A UDP-D-quinovosamine 4-d 26.1 68 0.0023 19.2 3.2 34 5-44 5-38 (141)
482 3hv1_A Polar amino acid ABC up 26.1 1.3E+02 0.0043 20.0 4.9 41 82-125 46-86 (268)
483 3ngf_A AP endonuclease, family 26.0 93 0.0032 21.0 4.2 80 17-121 91-178 (269)
484 3brq_A HTH-type transcriptiona 25.9 1.5E+02 0.0052 19.9 8.0 70 81-158 37-109 (296)
485 3i6v_A Periplasmic His/Glu/Gln 25.9 1.1E+02 0.0037 19.9 4.5 42 82-126 30-71 (232)
486 3fxa_A SIS domain protein; str 25.8 44 0.0015 21.7 2.4 40 4-44 92-131 (201)
487 3inp_A D-ribulose-phosphate 3- 25.7 1.1E+02 0.0036 21.1 4.3 42 85-128 124-165 (246)
488 4eq9_A ABC transporter substra 25.6 1.2E+02 0.0041 19.6 4.7 41 83-126 33-74 (246)
489 1nui_A DNA primase/helicase; z 25.6 74 0.0025 21.7 3.6 32 4-37 199-230 (255)
490 2poc_A D-fructose-6- PH, isome 25.6 1E+02 0.0035 22.3 4.6 39 4-43 97-135 (367)
491 3sr7_A Isopentenyl-diphosphate 25.5 1.9E+02 0.0066 21.2 5.9 51 80-131 191-242 (365)
492 3tql_A Arginine-binding protei 25.5 1.3E+02 0.0045 19.0 5.1 42 82-126 27-68 (227)
493 1ydg_A Trp repressor binding p 25.4 1.4E+02 0.0047 19.4 4.8 40 4-43 6-46 (211)
494 3tqq_A Methionyl-tRNA formyltr 25.4 1.9E+02 0.0064 20.7 8.7 41 86-129 49-90 (314)
495 2a9o_A Response regulator; ess 25.3 95 0.0033 17.3 7.5 70 82-159 12-81 (120)
496 3rxy_A NIF3 protein; structura 25.3 55 0.0019 23.1 2.8 25 102-126 41-66 (278)
497 5nul_A Flavodoxin; electron tr 25.3 1.1E+02 0.0039 18.1 5.3 44 81-131 13-57 (138)
498 3glc_A Aldolase LSRF; TIM barr 25.1 1.9E+02 0.0063 20.5 8.3 65 84-158 160-231 (295)
499 2y7i_A STM4351; arginine-bindi 25.1 1.4E+02 0.0047 19.0 4.9 41 83-126 32-72 (229)
500 3fwk_A FMN adenylyltransferase 24.9 1.9E+02 0.0066 20.7 9.4 91 6-130 60-171 (308)
No 1
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.97 E-value=1.4e-29 Score=166.02 Aligned_cols=146 Identities=24% Similarity=0.289 Sum_probs=102.3
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++++|||++|+|+.+..++++|+.+|+..+++|+++||.++....... ..+........... +..
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~----~~~~~~~~~~~~~~---------~~~ 69 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTP----YGTAIPLDTETTYD---------AML 69 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC------------CTTCCCSSSCCCHH---------HHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccc----cccccCcCHHHHHH---------HHH
Confidence 88999999999999999999999999999999999999999875431100 00000000000100 112
Q ss_pred hhHHHHHHHHhhhcCce-EEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAK-VVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
++..+.+.+.+...|+. +++.+..|++.++|++++++.++|+||||+++++.+. +++||++++|+++++|||++||++
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 70 DVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCC
Confidence 34455555556666776 4677889999999999999999999999999999888 999999999999999999999975
Q ss_pred C
Q 031202 160 P 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 149 ~ 149 (150)
T 3tnj_A 149 D 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.97 E-value=8.7e-30 Score=166.32 Aligned_cols=142 Identities=21% Similarity=0.295 Sum_probs=117.2
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|++++|||++|+|+.+..++++|+.+|+..+++|+++||.+........ ..... ....+...+..+
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~ 68 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA------------LDPVL--SELLDAEAAHAK 68 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG------------GHHHH--HHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc------------ccccc--HHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999876432100 00010 111222223456
Q ss_pred hHHHHHHHHhhhcCc-eEEEEEeeCChhhHHHH-HHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGA-KVVAKVYWGDPREKLCD-AVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~-~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
+.++.+.+.+...|+ ++++.+..|++.++|++ ++++.++|+||||+++++.+.++++||++++|+++++||||+||
T Consensus 69 ~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 69 DAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 667777777888899 99999999999999999 99999999999999999999999999999999999999999997
No 3
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.96 E-value=3.2e-29 Score=166.39 Aligned_cols=157 Identities=25% Similarity=0.228 Sum_probs=115.1
Q ss_pred CC-CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcc-cccccccCCCCCCChhh--HHHhhhhhhhc
Q 031202 1 MS-KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHT-RKQLFEDTGSPLVPLEE--FREINFSKQYG 76 (164)
Q Consensus 1 m~-~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 76 (164)
|+ ++++||||+|+|+.+..++++|+.+|+..+++|+++||.++..... ....+...+....+... .. ...+..
T Consensus 1 M~~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (162)
T 1mjh_A 1 MSVMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFEN---ELKNKL 77 (162)
T ss_dssp --CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHH---HHHHHH
T ss_pred CccccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHH---HHHHHH
Confidence 55 6899999999999999999999999999999999999987541000 00000000000001000 00 011111
Q ss_pred CCCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 77 LTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.+..++.++.+.+.+...|+++++.+..|++.++|++++++.++|+||||+++++++.++++||++++|+++++|||++|
T Consensus 78 ~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv 157 (162)
T 1mjh_A 78 TEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVV 157 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEE
Confidence 12345566677777777899999989999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 031202 157 KGNP 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|++.
T Consensus 158 ~~~~ 161 (162)
T 1mjh_A 158 KRKN 161 (162)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8753
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.96 E-value=9.6e-29 Score=165.35 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=112.9
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccc-cCCCCCCChhhHHHhhhhhhhcCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFE-DTGSPLVPLEEFREINFSKQYGLTS 79 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
|+++++|||++|+++.+..++++|+.+|+..+++|+++||.+..........+. ....+......+. +...+.
T Consensus 2 ~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 75 (170)
T 2dum_A 2 IFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIK------EKLKEE 75 (170)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSH------HHHHHH
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHH------HHHHHH
Confidence 347899999999999999999999999999999999999987643211000000 0000000000110 011122
Q ss_pred ChhHHHHHHHHhhhcCceEEE--EEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVA--KVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.++.++.+.+.+...|+++++ .+..|++.++|++++++.++|+||||+++++++.++++||++++|+++++||||+||
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 76 ASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 345566666666677888887 888999999999999999999999999999988889999999999999999999999
Q ss_pred CCCC
Q 031202 158 GNPV 161 (164)
Q Consensus 158 ~~~~ 161 (164)
....
T Consensus 156 ~~~~ 159 (170)
T 2dum_A 156 EVDE 159 (170)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 7653
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.96 E-value=7.4e-29 Score=161.99 Aligned_cols=144 Identities=22% Similarity=0.226 Sum_probs=113.5
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|+++|||++|+|+.+..++++|+.+|+..+++|+++|+.+..........+ ...... +...+..++..++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~ 70 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSM-------ARPEQL---DIPDDALKDYATE 70 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSS-------CCCGGG---CCCTTHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccc-------cChhhh---hhHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999875311100000 000000 0001111123456
Q ss_pred HHHHHHHHhhhcCceE---EEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 83 VLDILDTLSRTKGAKV---VAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~---~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.++.+.+.+...|+++ ++.+..|++.++|++++++.++|+||||+++++.+.++++||++++|+++++||||+|
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 6777777888889888 8889999999999999999999999999999999999999999999999999999986
No 6
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.96 E-value=2.4e-28 Score=158.12 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=112.3
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHh-ccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcC-CCCh
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNL-IDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGL-TSNP 81 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (164)
|++|||++|+|+.+..++++|+.+| +..+++|+++||.++...... ...... ...+..+ +..+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~ 65 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE--------------AVLAAY-DEIEMKEEEKAK 65 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH--------------HHHHHH-HHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc--------------cccCcH-HHHHHHHHHHHH
Confidence 5899999999999999999999999 999999999999988643210 000010 1111122 3456
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
+.++.+.+.+...|+++++.+..|++.++|+++++ ++|+||||+++++++.+++ ||++++|+++++||||+||
T Consensus 66 ~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 66 LLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 67777788888889999999999999999999999 8999999999999998888 9999999999999999997
No 7
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.96 E-value=7.8e-29 Score=163.62 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=113.7
Q ss_pred CCCCcEEEEEec--CChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCC
Q 031202 1 MSKARTVGVGMD--NSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLT 78 (164)
Q Consensus 1 m~~~~~ILv~~d--~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|+++++||||+| +|+.+..++++|+.+|+..+++|+++||.+...... . .. ..... .+...+
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-------~--~~-~~~~~------~~~~~~ 75 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI-------F--DS-LTPSK------IQAKRK 75 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC-------C--CS-SHHHH------HHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc-------c--cc-CCHHH------HHHHHH
Confidence 578999999999 999999999999999999999999999998764321 0 00 11111 111122
Q ss_pred CChhHHHHHHHHhhhcCc-eEEEEEee-CChhhHHHHH-HHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 79 SNPEVLDILDTLSRTKGA-KVVAKVYW-GDPREKLCDA-VEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~v~~-g~~~~~I~~~-a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
..++.++.+.+.+...|+ .+++.+.. |++.++|+++ +++.++|+||||+++++++. .++||++++|+++++||||+
T Consensus 76 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 76 HVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEE
Confidence 345667777777888898 58998999 9999999999 99999999999999999886 58999999999999999999
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
||
T Consensus 155 V~ 156 (156)
T 3fg9_A 155 VR 156 (156)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.96 E-value=3.1e-28 Score=162.00 Aligned_cols=143 Identities=28% Similarity=0.312 Sum_probs=111.8
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEE--EEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCC
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILI--HVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTS 79 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
.++++||||+|+|+.+..++++|+.+|+ .+++|+++ ||.+....... ... . . ....+...+.
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~--------~~~-~-----~-~~~~~~~~~~ 78 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAA--------DIL-K-----D-ESYKVTGTAP 78 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-----------------------------------CCT
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccc--------ccc-c-----c-HHHHHHHHHH
Confidence 4679999999999999999999999999 99999999 87765432000 000 0 0 0111223345
Q ss_pred ChhHHHHHHHHhhhcCce-EEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 80 NPEVLDILDTLSRTKGAK-VVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.++.++.+.+.+...|++ +++.+..|++.++|++++++.++|+||||+++++.+.++++||++++|+++++|||++||+
T Consensus 79 ~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 79 IYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeC
Confidence 567777777778888998 9998999999999999999999999999999999998999999999999999999999987
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
+.
T Consensus 159 ~~ 160 (163)
T 1tq8_A 159 TE 160 (163)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.96 E-value=1.7e-28 Score=162.09 Aligned_cols=131 Identities=22% Similarity=0.339 Sum_probs=110.8
Q ss_pred CCCcEEEEEecC-ChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 2 SKARTVGVGMDN-SPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 2 ~~~~~ILv~~d~-s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|++++|||++|+ ++.+..++++|+.+|+..+++|+++||.+..... .... .+..
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~---------------~~~~----------~~~~ 76 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT---------------KDED----------IIEA 76 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS---------------CHHH----------HHHH
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc---------------cHHH----------HHHH
Confidence 468999999999 9999999999999999999999999999865211 0111 0124
Q ss_pred hhHHHHHHHHhhhcCceEEEE--EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAK--VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
++.++.+.+.+...|+.+++. +..|++.++|++++++.++|+||||+++++++.++++||++++|+++++||||+|+
T Consensus 77 ~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 77 KETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 566777777777788877754 56699999999999999999999999999999999999999999999999999986
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.95 E-value=4.3e-28 Score=156.79 Aligned_cols=136 Identities=29% Similarity=0.389 Sum_probs=104.3
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|+++||||+|+|+.+..++++|..+|+..+++|+++||.++.... + .+ ..+ ..+. ++..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-----~--~~--~~~-~~~~---------~~~~~~ 61 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY-----L--GE--PFF-EEAL---------RRRLER 61 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC---------------------------------CHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcc-----c--cc--cch-HHHH---------HHHHHH
Confidence 379999999999999999999999999999999999999743210 0 00 000 0000 001122
Q ss_pred HHHHHHHHhhhcCc-eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 83 VLDILDTLSRTKGA-KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.+.+.....|+ ++++.+..|++.++|++++++.++|+||||+++++++.++++||++++|+++++|||+++|
T Consensus 62 ~~~~l~~~~~~~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 62 AEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHcCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 33334443333688 7777888999999999999999999999999999989889999999999999999999996
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.94 E-value=9.6e-27 Score=156.33 Aligned_cols=150 Identities=31% Similarity=0.537 Sum_probs=102.9
Q ss_pred CCcEEEEEecCCh---------hhHHHHHHHHHHh-cc--CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhh
Q 031202 3 KARTVGVGMDNSP---------NSKAALRWAADNL-ID--SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREIN 70 (164)
Q Consensus 3 ~~~~ILv~~d~s~---------~s~~al~~a~~la-~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (164)
.+++|||++|+++ .+..++++|+.++ +. .+++|+++||.+...... ...+........+..
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~-----~~~~~~~~~~~~~~~-- 76 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGF-----DDVDSIYASPEDFRD-- 76 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC---------------CCCCSHHHHHH--
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccc-----cccccccCCHHHHHH--
Confidence 5799999999999 9999999999987 43 689999999986542110 000000111111110
Q ss_pred hhhhhcCCCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC
Q 031202 71 FSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS 150 (164)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~ 150 (164)
..+...+..++.++.+.+.+...|+++++++..|++.++|++++++.++||||||+++++++.++++||++++|+++++
T Consensus 77 -~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~ 155 (175)
T 2gm3_A 77 -MRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE 155 (175)
T ss_dssp -HTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCC
Confidence 0111111234556666666777899999989999999999999999999999999999999989999999999999999
Q ss_pred ccEEEEeCCC
Q 031202 151 CPVTVVKGNP 160 (164)
Q Consensus 151 ~pVliv~~~~ 160 (164)
||||+||...
T Consensus 156 ~pVlvv~~~~ 165 (175)
T 2gm3_A 156 CPVMTIKRNA 165 (175)
T ss_dssp SCEEEEECCG
T ss_pred CCEEEEcCCc
Confidence 9999999754
No 12
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.94 E-value=1.2e-26 Score=169.17 Aligned_cols=149 Identities=18% Similarity=0.158 Sum_probs=115.6
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+++++|||++|+|+.+..++++|+.+|+..+++|+++|+.+...... . ......... ...+...+..
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~-------~--~~~~~~~~~---~~~~~~~~~~ 71 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDM-------T--TLLSPDERN---AMRKGVINQK 71 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGC-------T--TTSCHHHHH---HHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhh-------c--cccChhhHH---HHHHHHHHHH
Confidence 889999999999999999999999999999999999999987542211 0 011111111 1111111223
Q ss_pred hhHHHHHHHHhhhcCceEEEEEe-eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVY-WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
++.++.+.+.+...|+++++.+. .|++.++|.+++++.++||||||+++++.+.+.++||++.+|+++++||||++|+.
T Consensus 72 ~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 72 TAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 45666666667778999999988 89999999999999999999999999998889999999999999999999999976
Q ss_pred CC
Q 031202 160 PV 161 (164)
Q Consensus 160 ~~ 161 (164)
..
T Consensus 152 ~~ 153 (319)
T 3olq_A 152 EW 153 (319)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.94 E-value=6.5e-27 Score=152.12 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=105.8
Q ss_pred CcEEEEEecCChh--hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 4 ARTVGVGMDNSPN--SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 4 ~~~ILv~~d~s~~--s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.++||||+|+|+. +..++++|+.+|+..+++|+++||.+....... .+....... +..++..+
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~------~~~~~~~~~---------~~~~~~~~ 65 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYAS------LGMAYTAEL---------PGMDELRE 65 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-------------------------------CHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccc------ccccccchh---------hhHHHHHH
Confidence 3799999999999 999999999999999999999999987542210 000000000 00011234
Q ss_pred hHHHHHHHHhhhcC---ceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKG---AKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~---~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
+..+.+.+.+...+ .++++.+..|++.++|++++++.++|+||||+++ +++.++++||++++|+++++||||+||
T Consensus 66 ~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 66 GSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 56666777777665 4578889999999999999999999999999995 778889999999999999999999997
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.94 E-value=3e-26 Score=148.68 Aligned_cols=139 Identities=22% Similarity=0.153 Sum_probs=107.3
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|+++|||++|+|+.+..++++|..+|+..+++|+++||.+...... .+ ..... .....++..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-------~~---~~~~~------~~~~~~~~~~~ 64 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY-------TG---LIDVN------MSSMQDRISTE 64 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC-------CC---CEEHH------HHHHTTCCCCH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhh-------cc---ccccc------hHHHHHHHHHH
Confidence 4799999999999999999999999999999999999984321100 00 00000 01112233445
Q ss_pred HHHHHHHHhhhcCceE-EEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 83 VLDILDTLSRTKGAKV-VAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
..+.+.+.+...|+++ ...+..|++.++|++++++.++|+||||++ ++++.+ +||++++|+++++||||++|+..
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 65 TQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHHHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred HHHHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 5666666666778876 566888999999999999999999999999 887766 48999999999999999999753
No 15
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.93 E-value=2.5e-25 Score=160.39 Aligned_cols=125 Identities=15% Similarity=0.120 Sum_probs=112.7
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+++++|||++|+|+.+..++++|+.+|+..+++|+++|+.++ +..
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~----------------------------------~~~ 49 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR----------------------------------RDH 49 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS----------------------------------SCC
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc----------------------------------HHH
Confidence 7789999999999999999999999999999999999999863 224
Q ss_pred hhHHHHHHHHhhhcCceEEEEEe-eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVY-WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
++.++.+.+.+...|+++++.+. .|++.++|.+++++.++|+||||+++++.+.+.++||++++++++++||||++|+.
T Consensus 50 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 50 SAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 56667777777788999999887 57899999999999999999999999998889999999999999999999999943
No 16
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.92 E-value=8.1e-26 Score=163.20 Aligned_cols=144 Identities=24% Similarity=0.259 Sum_probs=116.6
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|||+++|||++|+|+.+..++++|+.+|+..+++|+++|+.+...... .. .......+.. ..++..
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~-------~~-~~~~~~~~~~------~~~~~~ 84 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLST-------VS-GGIDIDHYID------EMSEKA 84 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------------CCCTTHHHH------HHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccc-------cc-ccccHHHHHH------HHHHHH
Confidence 678999999999999999999999999999999999999998764321 00 0011111111 111234
Q ss_pred hhHHHHHHHHhhhcCceEEE-EEe-eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVA-KVY-WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~v~-~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
++.++.+.+.+...|+++++ .+. .|++.++| ++++.++|+||||+++++.+.++++||++++|+++++||||++|+
T Consensus 85 ~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 162 (294)
T 3loq_A 85 EEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKH 162 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecC
Confidence 56777777888888999998 777 89999999 999999999999999999888889999999999999999999997
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 163 ~~ 164 (294)
T 3loq_A 163 DM 164 (294)
T ss_dssp CT
T ss_pred cc
Confidence 65
No 17
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.91 E-value=7.8e-24 Score=152.58 Aligned_cols=137 Identities=16% Similarity=0.146 Sum_probs=106.9
Q ss_pred CCcEEEEEecCChh-------hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhh
Q 031202 3 KARTVGVGMDNSPN-------SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQY 75 (164)
Q Consensus 3 ~~~~ILv~~d~s~~-------s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (164)
.+++|||++|+|+. +..++++|..+|+..+++|+++||.+...... . .+...+..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--------~---~~~~~~~~------- 194 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS--------A---DPTFQLSE------- 194 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--------------------CHHHHH-------
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc--------c---CchhHHHH-------
Confidence 46899999999998 89999999999999999999999998764321 0 00001111
Q ss_pred cCCCChhHHHHHHHHhhhcCce-EEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 76 GLTSNPEVLDILDTLSRTKGAK-VVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
+..++..+.+.++..+.|++ +...+..|++.++|++++++.++|+||||+++++++.++++||++++|+++++||||
T Consensus 195 --~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVL 272 (290)
T 3mt0_A 195 --TIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVL 272 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEE
T ss_pred --HHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEE
Confidence 11223445555566666774 566688999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC
Q 031202 155 VVKGN 159 (164)
Q Consensus 155 iv~~~ 159 (164)
++|+.
T Consensus 273 vv~~~ 277 (290)
T 3mt0_A 273 VLKPD 277 (290)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 99864
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.91 E-value=4.2e-24 Score=138.07 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=97.1
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe-CC-CCCcccccccccCCCCCCChhhHHHhhhhhhhcCCC
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ-PP-NADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTS 79 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
.++++|||++|+|+.+..++++|..+|+..+++|+++|+. +. +... .+...+.+.. ..+.. ... +.
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~----~~~~~~~~~~--~~~~~--~~~----~~ 69 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLER----ANVTFGLPFP--PEIKE--ESK----KR 69 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHH----HHHHHCCCCC--THHHH--HHH----HH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccc----cccccCCCCC--hHHHH--HHH----HH
Confidence 3689999999999999999999999999999999999998 53 1000 0000011100 11111 011 11
Q ss_pred ChhHHHHHHHH--hhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTL--SRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.++.++.+ +. +...| ++++++..|++.++|++++++.++|+||||++++ |++++|+++++||||++|
T Consensus 70 ~~~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 70 IERRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEECC
T ss_pred HHHHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEeeC
Confidence 23444444 44 34456 7888888999999999999999999999998865 899999999999999986
No 19
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.91 E-value=3.2e-24 Score=155.88 Aligned_cols=142 Identities=23% Similarity=0.368 Sum_probs=110.6
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
+++++|||++|+|+.+..++++|+.+|+..+++|+++|+.++.... +.. ...+ ..... ... +..+
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~-----~~~---~~~~-~~~~~--~~~----~~~~ 81 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVAT-----WLE---VPLP-PGVLR--WQQ----DHGR 81 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCC-----TTC---CCCC-HHHHH--HHH----HHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccc-----ccc---CCCC-chhhH--HHH----HHHH
Confidence 4689999999999999999999999999999999999998743211 100 0111 11111 111 1234
Q ss_pred hHHHHHHHHhhhc-----CceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 82 EVLDILDTLSRTK-----GAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~-----~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
+.++.+.+.+... |+++++.+..|++.++|+++++ ++|+||||+++++++.++++||++++|+++++||||++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv 159 (309)
T 3cis_A 82 HLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 159 (309)
T ss_dssp HHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEE
Confidence 5566666666654 8999999999999999999997 67999999999998889999999999999999999999
Q ss_pred eCCC
Q 031202 157 KGNP 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 160 ~~~~ 163 (309)
T 3cis_A 160 HDED 163 (309)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 9764
No 20
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.90 E-value=3e-24 Score=153.04 Aligned_cols=149 Identities=19% Similarity=0.137 Sum_probs=111.3
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHH-hhhhhhhcCCCChhH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFRE-INFSKQYGLTSNPEV 83 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (164)
++|||++|+|+.+..++++|+.+|+..+++|+++|+.+...... ....+.... ...+.. +....+...+..++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARI----PELLDFGAL-TVPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTH----HHHC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCccc----ccccCchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987542110 000111100 001100 000011112234566
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc-cccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG-ALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~-~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
++.+.+.+...|+++++.+..|++.++|+++ +.++|+||||+++++ .+.++++||++++|+++++|||+++|+..
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 7777777778899999999999999999999 888999999999988 88889999999999999999999999754
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=3.7e-23 Score=149.27 Aligned_cols=124 Identities=27% Similarity=0.387 Sum_probs=113.0
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++|||++|+++.+..++++|..+++..+++|+++|+.+... .++
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------------------------~~~ 214 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------------------------KTA 214 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------------------------CHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------------------------HHH
Confidence 5789999999999999999999999999999999999987642 245
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
.++.+.+.+...|+++++.+..|++.++|.+++++.++||||||+++++++.++++||++++|+++++||||++|+..
T Consensus 215 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 215 DLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCC
Confidence 666777777788999998899999999999999999999999999999999999999999999999999999999764
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.89 E-value=9e-23 Score=148.64 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=111.2
Q ss_pred CCcEEEEEecCCh-------hhHHHHHHHHHHhccC--CCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhh
Q 031202 3 KARTVGVGMDNSP-------NSKAALRWAADNLIDS--GDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSK 73 (164)
Q Consensus 3 ~~~~ILv~~d~s~-------~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (164)
.+++|||++|+++ .+..++++|..+|+.. +++|+++|+.+...... ..+.+......+..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~------~~~~~~~~~~~~~~----- 223 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI------AIELPDFDPNLYNN----- 223 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC------CTTCTTCCHHHHHH-----
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh------hccCCcccHHHHHH-----
Confidence 4789999999998 5799999999999998 99999999998764321 01111111111111
Q ss_pred hhcCCCChhHHHHHHHHhhhcCce-EEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCcc
Q 031202 74 QYGLTSNPEVLDILDTLSRTKGAK-VVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCP 152 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~p 152 (164)
+..++..+.+.+++...++. +...+..|++.++|++++++.++||||||+++++++.++++||++++|+++++||
T Consensus 224 ----~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~p 299 (319)
T 3olq_A 224 ----ALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCD 299 (319)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSE
T ss_pred ----HHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCC
Confidence 11234455566666666663 5566789999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC
Q 031202 153 VTVVKGNP 160 (164)
Q Consensus 153 Vliv~~~~ 160 (164)
||++|+..
T Consensus 300 VLvv~~~~ 307 (319)
T 3olq_A 300 LLAIKPDG 307 (319)
T ss_dssp EEEECCTT
T ss_pred EEEECCCC
Confidence 99998754
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.88 E-value=2.6e-22 Score=145.84 Aligned_cols=136 Identities=24% Similarity=0.247 Sum_probs=104.5
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++|||++|+++.+..++++|..+|+..+++|+++|+.++.... +.+......... ..++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---------~~~~~~~~~~~~----------~~~~ 230 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS---------EWPGIDWPATQS----------MAEQ 230 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT---------TCSSCCHHHHHH----------HHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc---------CCCcccHHHHHH----------HHHH
Confidence 368999999999999999999999999999999999998764321 000001111100 1122
Q ss_pred HHHHHHHHhhh--cCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 83 VLDILDTLSRT--KGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 83 ~~~~~~~~~~~--~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.++.+.+.+.. .+++++.++..|++.++|+++++ ++|+||||+++++++.++++||++++|+++++|||+++|++
T Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 231 VLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp HHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 23333323322 48888888889999999999998 88999999999999999999999999999999999999864
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.85 E-value=4.1e-21 Score=136.76 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=101.1
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++|||++|+++.+..++++|..++...+++++++|+.++.. ..++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~---------------------------------~~~~ 199 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA---------------------------------RAEA 199 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH---------------------------------HHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH---------------------------------HHHH
Confidence 3689999999999999999999999999999999999986520 0134
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.++.+.+.+...|+++++.+..|++.++|.+++++. |+||||+ ++.++++||++++|+++++|||+++|
T Consensus 200 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 200 WALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 455666677778999998888999999999999999 9999998 56788999999999999999999986
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.56 E-value=0.0013 Score=41.13 Aligned_cols=129 Identities=17% Similarity=0.057 Sum_probs=87.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCC-CeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSG-DLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~-~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|++|||.+...=.+..+.+....+..... ..+.++--..+. . +... + .....+.+++
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~-~----------a~~~-------e----~~~a~~~A~~ 58 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPP-P----------GWVY-------E----ENEVRRRAEE 58 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECC-C----------CSCC-------------CHHHHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCC-c----------cccc-------C----hHHHHHHHHH
Confidence 37999999887766666665566666554 666544433221 0 0000 0 0001122455
Q ss_pred HHHHHHHHhhhcCceEE-EEEeeCChhhHHHHHHHhcC--CCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 83 VLDILDTLSRTKGAKVV-AKVYWGDPREKLCDAVEDLK--LDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~v~~g~~~~~I~~~a~~~~--~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.++.....++..|..++ .++..++|..++.....+.+ +|-||+-+.++. ..++|.-..+.+.=+ ...||+=+
T Consensus 59 ~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 59 EAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPG-LSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTT-TCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCch-HHHHHhccHHHHHHh-cCCCEEEE
Confidence 56666667778899999 99999999999999999999 999999988654 345666667777666 88999865
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.59 E-value=0.02 Score=43.68 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=69.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC-CcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA-DHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
-.+|+|+++|..+|-.++..+..+....+.++.++||..... .. ...
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~--------------------------------s~~ 65 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRE--------------------------------SEE 65 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHH--------------------------------HHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccc--------------------------------cHH
Confidence 358999999999999999988888777888999999986532 10 123
Q ss_pred HHHHHHHHhhhcCceEEEEEee--------C-Ch--------hhHHHHHHHhcCCCEEEEeecC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW--------G-DP--------REKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliv~g~~~ 129 (164)
..+.+.+.|...|+++...-.. | ++ -..+.+++++.+++.|+.|++.
T Consensus 66 ~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 66 EMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred HHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 4567788888889987765221 1 11 1456677888999999999863
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=96.54 E-value=0.024 Score=40.93 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=66.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCe-EEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDL-IILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~-l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
-++|+|+++|..+|-.++..+..+....+.+ +.++|+....... ..+
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~--------------------------------s~~ 71 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRES--------------------------------AER 71 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTH--------------------------------HHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcc--------------------------------cHH
Confidence 3689999999999998888887776667778 9999997653210 123
Q ss_pred HHHHHHHHhhhcCceEEEEEee--------C-Chh--------hHHHHHHHhcCCCEEEEeec
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW--------G-DPR--------EKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~--------g-~~~--------~~I~~~a~~~~~dliv~g~~ 128 (164)
..+.+.+.|...|+++...-.. | ++. ..+.+.+++.+++.|+.|++
T Consensus 72 ~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~ 134 (317)
T 1wy5_A 72 DEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHH 134 (317)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCC
T ss_pred HHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 4566777888888887654211 1 111 34566788899999999986
No 28
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=95.40 E-value=0.095 Score=38.06 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=62.9
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.+++|+++|..+|..++..+..+....+.++.++|+...... .+.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~----------------------------------~et 91 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF----------------------------------QEM 91 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC----------------------------------HHH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC----------------------------------HHH
Confidence 4589999999999999998888876655667888998665421 244
Q ss_pred HHHHHHHhhhcCceEEEEEe-----eCC-hh-------------hHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVY-----WGD-PR-------------EKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~-----~g~-~~-------------~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+.+.+...|+++...-. .|. .. +.+.+.+++.++|.++.|.+.
T Consensus 92 ~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~ 156 (325)
T 1zun_A 92 YRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARR 156 (325)
T ss_dssp HHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 55666677777877665421 121 10 246666777889999999763
No 29
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=95.37 E-value=0.059 Score=36.81 Aligned_cols=41 Identities=10% Similarity=-0.130 Sum_probs=33.8
Q ss_pred CCcEEEEEecC-----ChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 3 KARTVGVGMDN-----SPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 3 ~~~~ILv~~d~-----s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.|+.|||.++- .+.+..++..|.+|+...+.+++++.+-+.
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~ 47 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTG 47 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESC
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 46789999874 466899999999999988999999988754
No 30
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=94.97 E-value=0.64 Score=33.08 Aligned_cols=122 Identities=10% Similarity=0.050 Sum_probs=78.8
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLD 85 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|||++........++++|..+.. ..+-++++++.+..... ...+.++
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~~~-------------------------------~l~~ql~ 69 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTDKE-------------------------------NLLSQLP 69 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---CTT-------------------------------CHHHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCCcc-------------------------------HHHHHHH
Confidence 789999776677788888888755 56679999997555321 1011147
Q ss_pred HHHHHhhhcCceEEEEEe-eCChhhHHHHHHHhc-----CCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 86 ILDTLSRTKGAKVVAKVY-WGDPREKLCDAVEDL-----KLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~-----~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+.+++.++-.-+++. ..++.+++...++.+ .++.|++|......-.. -+..... -+++...-|++++..
T Consensus 70 ~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~-~y~~~i~-~~~~~~~nVlil~~~ 147 (294)
T 3g40_A 70 SISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDE-EIREIIR-KASMYRMGVLLFSKH 147 (294)
T ss_dssp HHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHH-HHHHHHH-HHHHTTCEEEEEECC
T ss_pred HHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhH-HHHHHHH-HHHHhCceEEEEecC
Confidence 788899999999888855 458999998887765 46899999765443221 1222333 344568899999765
Q ss_pred CC
Q 031202 160 PV 161 (164)
Q Consensus 160 ~~ 161 (164)
++
T Consensus 148 ~~ 149 (294)
T 3g40_A 148 PQ 149 (294)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 31
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=94.95 E-value=0.25 Score=32.43 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-Chhh---HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPRE---KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~---~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+.+.+.+++.|++++..|..- ...+ ++.+.+++.+++.||.|.-....+ +.-+.-.++.||+=||
T Consensus 36 ~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahL--------pGvvAa~T~~PVIGVP 107 (181)
T 4b4k_A 36 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHL--------PGMVAAKTNLPVIGVP 107 (181)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCH--------HHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccc--------hhhHHhcCCCCEEEEe
Confidence 445566677778899999988765 3334 444455667889999887765443 4446778899999999
Q ss_pred CCCC
Q 031202 158 GNPV 161 (164)
Q Consensus 158 ~~~~ 161 (164)
-...
T Consensus 108 v~s~ 111 (181)
T 4b4k_A 108 VQSK 111 (181)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 7653
No 32
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=94.85 E-value=0.11 Score=39.75 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
-.+|..|++.|...+.+|..+++.++..... ..... ....+.+..+.+.+++.|..
T Consensus 52 N~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~-------------~~~r~-----------~Fl~~sL~~L~~~L~~~G~~ 107 (482)
T 2xry_A 52 NWALLFSRAIAKEANVPVVVVFCLTDEFLEA-------------GIRQY-----------EFMLKGLQELEVSLSRKKIP 107 (482)
T ss_dssp CHHHHHHHHHHHHHTSCEEEEEEECTTGGGS-------------CHHHH-----------HHHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHcCCcEEEEEEeChhhhcc-------------CHHHH-----------HHHHHHHHHHHHHHHHcCCc
Confidence 4578888887766677899999998763210 00000 12345677777777788888
Q ss_pred EEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 98 VVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 98 ~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+. ++.|++.+.|.+.+++.+++.|+....... ... .....+....+|++..+..
T Consensus 108 L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~-~~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 108 SF--FLRGDPGEKISRFVKDYNAGTLVTDFSPLR-IKN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp EE--EEESCHHHHHHHHHHHTTCSEEEEECCCSH-HHH----HHHHHHHHHCCSCEEEECC
T ss_pred EE--EEeCCHHHHHHHHHHHcCCCEEEEecccch-hHH----HHHHHHHHHcCCEEEEEeC
Confidence 76 567999999999999999999998654322 111 1233444444888877764
No 33
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=94.36 E-value=0.091 Score=36.99 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=25.0
Q ss_pred cCChhhHHHHHHHHHHhccCCC--eEEEEEEeC
Q 031202 12 DNSPNSKAALRWAADNLIDSGD--LIILIHVQP 42 (164)
Q Consensus 12 d~s~~s~~al~~a~~la~~~~~--~l~ll~v~~ 42 (164)
..++.+..+++.|.+|+...+. +++++.+-+
T Consensus 34 ~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~ 66 (264)
T 1o97_C 34 DLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP 66 (264)
T ss_dssp EECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc
Confidence 3457788999999999877666 899888874
No 34
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=94.16 E-value=1.1 Score=34.02 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
...++|+|+++|.-+|-.++.++.+ .+.+++.+++...
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e----~G~eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQ----KGAVPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHH----cCCEEEEEEEEcC
Confidence 3457999999999999888887755 2789999999765
No 35
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=94.11 E-value=0.14 Score=35.74 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=24.2
Q ss_pred CChhhHHHHHHHHHHhccCCC--eEEEEEEeCC
Q 031202 13 NSPNSKAALRWAADNLIDSGD--LIILIHVQPP 43 (164)
Q Consensus 13 ~s~~s~~al~~a~~la~~~~~--~l~ll~v~~~ 43 (164)
.++.+..|++.|.+|... +. +++++.+-+.
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~ 66 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK 66 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh
Confidence 356788999999999876 66 8999988853
No 36
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=94.11 E-value=0.64 Score=31.15 Aligned_cols=40 Identities=18% Similarity=-0.017 Sum_probs=28.8
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
||.+++++|+++|..+|-.++..+. ..+.++..+|+....
T Consensus 3 ~m~~~kv~v~~SGG~DS~~ll~ll~----~~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 3 AMKLMDVHVLFSGGKDSSLSAVILK----KLGYNPHLITINFGV 42 (203)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHH----HTTEEEEEEEEECSS
T ss_pred cccCCeEEEEEECcHHHHHHHHHHH----HcCCCeEEEEEeCCC
Confidence 4567899999999999987765543 356789999987553
No 37
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=94.09 E-value=0.52 Score=30.59 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHH---HhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAV---EDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a---~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++.+.++..|+.++..|..- ...+.+.+++ ++.+++.||.+.-.... .+.-+.-.+++||+=||
T Consensus 19 ~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~--------LpgvvA~~t~~PVIgVP 90 (166)
T 3oow_A 19 STMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAH--------LPGMVAAKTTLPVLGVP 90 (166)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCC--------HHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchh--------hHHHHHhccCCCEEEee
Confidence 445566667778899999888765 4445555554 44678888888765543 34457778899999999
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 91 ~~~ 93 (166)
T 3oow_A 91 VKS 93 (166)
T ss_dssp CCC
T ss_pred cCc
Confidence 654
No 38
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=93.67 E-value=0.74 Score=34.57 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.4
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+..++++|+++|.-+|-.++.++.+. +.+++.+|+...
T Consensus 2 ~~~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 2 MSSKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp ---CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 545579999999999998877776552 778999998765
No 39
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=93.67 E-value=0.4 Score=31.32 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhH---HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREK---LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~---I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++.+.+++.|++++..|..- ...+. +.+.+++.+++.||.+......+ +.-+.-.+++||+=||
T Consensus 26 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahL--------pgvvA~~t~~PVIgVP 97 (173)
T 4grd_A 26 DVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHL--------PGMLAAKTTVPVLGVP 97 (173)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCH--------HHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccc--------hhhheecCCCCEEEEE
Confidence 345556667778899999888764 33344 44555567889888887655433 3446667899999998
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 98 v~~ 100 (173)
T 4grd_A 98 VAS 100 (173)
T ss_dssp ECC
T ss_pred cCC
Confidence 544
No 40
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=93.65 E-value=0.5 Score=35.65 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=50.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhcc-CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLID-SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
-.+|+|+++|..+|-.++..+..+... .+.++.++||...... ...+
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~--------------------------------~s~~ 60 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA--------------------------------NADA 60 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS--------------------------------SHHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc--------------------------------ccHH
Confidence 468999999999999888888887766 7889999999765421 1233
Q ss_pred HHHHHHHHhhhcCceEEEE
Q 031202 83 VLDILDTLSRTKGAKVVAK 101 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (164)
..+.+.+.|...|+++...
T Consensus 61 ~~~~v~~~~~~lgi~~~v~ 79 (433)
T 1ni5_A 61 WVTHCENVCQQWQVPLVVE 79 (433)
T ss_dssp HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 4567778888889887764
No 41
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=93.57 E-value=0.68 Score=29.76 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+++...++..|++++..|..- ...+.+.+++++...+.||.+...... .+.-+.-.+++||+=||.
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~--------Lpgvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAH--------LPGVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCC--------HHHHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhh--------hHHHHHhccCCCEEEecC
Confidence 345566667778899999988764 667888888887665888887765543 345577788999999986
No 42
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=93.57 E-value=0.11 Score=36.41 Aligned_cols=28 Identities=18% Similarity=0.098 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHhccCCC--eEEEEEEeCC
Q 031202 15 PNSKAALRWAADNLIDSGD--LIILIHVQPP 43 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~--~l~ll~v~~~ 43 (164)
+.+..|++.|.+|... +. +++++.+-++
T Consensus 40 p~d~~Ale~A~~Lke~-g~~~~V~av~~G~~ 69 (255)
T 1efv_B 40 PFCEIAVEEAVRLKEK-KLVKEVIAVSCGPA 69 (255)
T ss_dssp HHHHHHHHHHHHHHHT-TSCSEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEeCCh
Confidence 4567999999999776 66 8999988854
No 43
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=93.46 E-value=1.1 Score=30.56 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|...++|.|.+.++.....++-.+. +..+.+..++.|+......
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~---~~~~~~~~I~~Vis~~~~a--------------------------------- 48 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAF---STEESSVVISCVISNNAEA--------------------------------- 48 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHT---CCC-CSEEEEEEEESCTTC---------------------------------
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHH---HcCCCCcEEEEEEeCCcch---------------------------------
Confidence 4556799999999876655544443 2222234455555443110
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
. . .+.+.++|+++...-...-..+++.+..++.++|++|+....
T Consensus 49 ~-~----l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 49 R-G----LLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp T-H----HHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred H-H----HHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 0 1 245677798877421111123789999999999999997653
No 44
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=93.43 E-value=1 Score=30.28 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=58.2
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+|+|+++|..+|..++..+.++. .++.++|+..... ..+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~----------------------------------~~e~~ 86 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYL----------------------------------FPETY 86 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCB----------------------------------CHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCC----------------------------------CHHHH
Confidence 389999999999988888776653 4678888876532 12345
Q ss_pred HHHHHHhhhcCceEEEEEeeCChh--------------------------hHHHHHHHhcCCCEEEEeecC
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPR--------------------------EKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~--------------------------~~I~~~a~~~~~dliv~g~~~ 129 (164)
+.+++.+...|+++...-...... ..+.+.+++.+++.++.|.+.
T Consensus 87 ~~v~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~ 157 (215)
T 1sur_A 87 RFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRR 157 (215)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCT
T ss_pred HHHHHHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeh
Confidence 666777778888877542211110 123456677777889999764
No 45
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=93.32 E-value=0.78 Score=29.87 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHH---hcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVE---DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++...++..|++++..|..- ...+.+.++++ +.+++.||.+...... .+.-+.-.++.||+=||
T Consensus 25 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~--------LpgvvA~~t~~PVIgVP 96 (170)
T 1xmp_A 25 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAH--------LPGMVAAKTNLPVIGVP 96 (170)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCC--------HHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhh--------hHHHHHhccCCCEEEee
Confidence 345566667778899999888764 45556666655 4568888887765543 34457778899999999
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 97 ~~~ 99 (170)
T 1xmp_A 97 VQS 99 (170)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 46
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=93.03 E-value=0.84 Score=29.85 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHH---HhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAV---EDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a---~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++.+.++..|++++..|..- ...+.+.+++ ++.+++.||.+.-.... .+.-|.-.++.||+=||
T Consensus 26 ~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~--------LpgvvA~~t~~PVIgVP 97 (174)
T 3kuu_A 26 ATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAH--------LPGMLAAKTLVPVLGVP 97 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCC--------HHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhh--------hHHHHHhccCCCEEEee
Confidence 445566667778899999888764 4445555554 45778988887665543 34457778899999998
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 98 ~~~ 100 (174)
T 3kuu_A 98 VQS 100 (174)
T ss_dssp ECC
T ss_pred CCC
Confidence 643
No 47
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=92.94 E-value=0.94 Score=29.47 Aligned_cols=71 Identities=8% Similarity=0.083 Sum_probs=49.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHH---HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKL---CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I---~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++...++..|++++..|..- ...+.+ .+.+++.+++.||.+.-.... .+.-+.-.++.||+=||
T Consensus 20 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~--------LpgvvA~~t~~PVIgVP 91 (169)
T 3trh_A 20 STMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAH--------LAGTIAAHTLKPVIGVP 91 (169)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCC--------HHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhh--------hHHHHHhcCCCCEEEee
Confidence 345566667778899999888764 334444 444556788888877665443 34557778899999999
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 92 ~~~ 94 (169)
T 3trh_A 92 MAG 94 (169)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 48
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=92.77 E-value=0.065 Score=38.09 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcC
Q 031202 16 NSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKG 95 (164)
Q Consensus 16 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
+..-++-.|..|...++++|.++.|++... ..+++...+.+.....-
T Consensus 177 Ng~LmlllAylL~~nW~A~I~L~~vV~de~---------------------------------a~~~a~~~l~~Lv~~~R 223 (294)
T 3g40_A 177 NMDLALLIAYKLKSNWKASLSFMTFAPTAI---------------------------------QAQAAENFLQSLAELAR 223 (294)
T ss_dssp TTHHHHHHHHHHHHHHTCEEEEEEECSSHH---------------------------------HHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhhCcCCeEEEEEecCCHH---------------------------------HHHHHHHHHHHHHHHhc
Confidence 344566667777777899999999987642 12334444444444443
Q ss_pred ceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 96 AKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+..+..+.. .+..+|++.+ .++|++++|-.....+. ..++++..+...-+.+++
T Consensus 224 i~a~~~vv~-~~F~~il~~s--~~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~d 277 (294)
T 3g40_A 224 IPNVKMQVL-RENPIKSSKL--PFASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALD 277 (294)
T ss_dssp CCSCEEEEE-SSCTTTSSSC--CCCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEEC
T ss_pred CCceEEEec-CchHHHHhhC--cCCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEec
Confidence 333323334 6666777665 55799999986655443 356677777666666654
No 49
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=92.61 E-value=1.5 Score=29.30 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+ .++++|.++|..+|-.++..+.+. +.++..+|+...
T Consensus 1 m~-~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 1 MK-KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp ---CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CC-CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 54 468999999999998777766553 468889998865
No 50
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=92.36 E-value=0.29 Score=37.79 Aligned_cols=83 Identities=20% Similarity=0.099 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
-.||..|++.|...+.+|..+++.++..... + ..... .....+.+..+.+.++..|..
T Consensus 53 N~AL~~A~~~a~~~~~pVl~vfildp~~~~~--------~---~~~~r-----------~~FL~~sL~dL~~~L~~lG~~ 110 (506)
T 3umv_A 53 NWALLHAAGLAAASASPLAVAFALFPRPFLL--------S---ARRRQ-----------LGFLLRGLRRLAADAAARHLP 110 (506)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECCCTTCGG--------G---CCHHH-----------HHHHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHhhhhcCCCEEEEEeccchhhcc--------C---CCHHH-----------HHHHHHHHHHHHHHHHHcCCc
Confidence 3688889888877788899999998762110 0 00000 022346677777778788887
Q ss_pred EEEEEeeCChhhHHHHHHHhcCCCEEEE
Q 031202 98 VVAKVYWGDPREKLCDAVEDLKLDTLVV 125 (164)
Q Consensus 98 ~~~~v~~g~~~~~I~~~a~~~~~dliv~ 125 (164)
.- ++.|++.+. .+.+++.+++.|+.
T Consensus 111 L~--v~~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 111 FF--LFTGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp EE--EESSCTTHH-HHHHHHTTCSEEEE
T ss_pred eE--EEecChHHH-HHHHHhcCCCEEEe
Confidence 76 668999999 99999999999986
No 51
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=92.36 E-value=0.82 Score=29.90 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=48.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-Ch---hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DP---REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~---~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++...++..|++++..|..- .. ...+.+.+++.+++.||.+.-.... .+.-+.-.++.||+=||
T Consensus 21 ~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~--------LpgvvA~~t~~PVIgVP 92 (174)
T 3lp6_A 21 PVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAH--------LPGMVAAATPLPVIGVP 92 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCC--------HHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhh--------hHHHHHhccCCCEEEee
Confidence 345566667778899999887764 33 4455555667888988887765543 34446667899999998
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
-.
T Consensus 93 ~~ 94 (174)
T 3lp6_A 93 VP 94 (174)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 52
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=92.14 E-value=0.32 Score=32.94 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=31.4
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
|+..++|++++.|+..+.++.+..-.|.+ .+.+++++-
T Consensus 1 m~~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~ 38 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLI 38 (209)
T ss_dssp CCSCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 78889999999999999998888777655 478777654
No 53
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=91.94 E-value=1 Score=29.69 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHH---hcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVE---DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++...++..|++++..|..- ...+.+.++++ +.+++.||.+......+ +.-+.-.++.||+=||
T Consensus 35 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP 106 (182)
T 1u11_A 35 ETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHL--------PGMCAAWTRLPVLGVP 106 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhh--------HHHHHhccCCCEEEee
Confidence 445566667778899999888764 45566666655 45688888877655433 4446677899999998
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 107 ~~~ 109 (182)
T 1u11_A 107 VES 109 (182)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 54
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=91.86 E-value=1.7 Score=32.14 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=59.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+|+++|..+|-.++..+.+ .+-++..+|+........ ... ....+-
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~---------------~~~-----------c~~~~d 58 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTDE---------------NGV-----------CTATED 58 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC------------------------------CHHHHH
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCcccc---------------ccc-----------CCCHHH
Confidence 35899999999999776665544 478899999875432100 000 001223
Q ss_pred HHHHHHHhhhcCceEEEEEee-----------------CC------------hhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW-----------------GD------------PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~-----------------g~------------~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+++.|+..|+++...-.. |. -...+.++|++.++|.|+.|++.
T Consensus 59 ~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 59 YKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred HHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 455666666667766543211 10 13567788999999999999753
No 55
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=91.75 E-value=1.2 Score=28.89 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=48.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHH---HHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDA---VEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~---a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++...++..|++++..|..- ...+.+.++ +++.+++.||.+.-....+ +.-+.-.++.||+=||
T Consensus 17 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP 88 (163)
T 3ors_A 17 KIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHL--------PGMVASLTTLPVIGVP 88 (163)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhh--------HHHHHhccCCCEEEee
Confidence 345566667778899999888764 444555555 4456789888876655433 4446667899999998
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 89 ~~~ 91 (163)
T 3ors_A 89 IET 91 (163)
T ss_dssp ECC
T ss_pred CCC
Confidence 644
No 56
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=91.53 E-value=1.3 Score=29.27 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=48.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHH---HhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAV---EDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a---~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
...+++...++..|++++..|..- ...+.+.+++ ++.+++.||.+....+.+ +.-+.-.++.||+=||
T Consensus 27 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP 98 (183)
T 1o4v_A 27 PVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHL--------PGMVASITHLPVIGVP 98 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCccccc--------HHHHHhccCCCEEEee
Confidence 445566667778899999988764 4445555554 456788888877655433 4446667899999999
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 99 ~~~ 101 (183)
T 1o4v_A 99 VKT 101 (183)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 57
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=91.08 E-value=2.1 Score=29.83 Aligned_cols=40 Identities=3% Similarity=-0.171 Sum_probs=31.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+.+++|+++|..+|..++..+.++... +.++.++|+....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 457999999999999888888777554 5678888886554
No 58
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=91.00 E-value=2.5 Score=29.18 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=55.0
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+...++++.++|..+|-.++-.+ +..|-++..++...+..... + ..+
T Consensus 1 ~~~~MKvvvl~SGGkDSs~al~~l----~~~G~eV~~L~~~~~~~~~s-----------------~-----~~h------ 48 (237)
T 3rjz_A 1 MVGLADVAVLYSGGKDSNYALYWA----IKNRFSVKFLVTMVSENEES-----------------Y-----MYH------ 48 (237)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHH----HHTTCEEEEEEEEECC------------------------------------
T ss_pred CCCCCEEEEEecCcHHHHHHHHHH----HHcCCeEEEEEEEcCCCCCc-----------------c-----ccC------
Confidence 555458999999999997666544 44577787776554432100 0 000
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC---ChhhHHHHHHHhcCCCEEEEeec
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG---DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..-.+.++.++...|++....-..| +..+.+.+..++.+++.+|.|.-
T Consensus 49 ~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 49 TINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred CccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 0112344556666788776543333 34677777777778999999864
No 59
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=90.47 E-value=4 Score=31.42 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=28.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
++++++++|..+|..++..+.+. +.+++.+|+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCC
Confidence 58999999999998777766554 789999998754
No 60
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=90.45 E-value=2 Score=30.75 Aligned_cols=91 Identities=9% Similarity=0.102 Sum_probs=60.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhcc------------------CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLID------------------SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEF 66 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~------------------~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (164)
.+|+|+++|..+|..++..+...... .+.++.++|+.....
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--------------------- 112 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--------------------- 112 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC---------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC---------------------
Confidence 47999999999998888877665311 245788888875532
Q ss_pred HHhhhhhhhcCCCChhHHHHHHHHhhhcCceEEEEEe----eCChhhHHHHHHHhc-CCCEEEEeecC
Q 031202 67 REINFSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVY----WGDPREKLCDAVEDL-KLDTLVVGSRG 129 (164)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~g~~~~~I~~~a~~~-~~dliv~g~~~ 129 (164)
..+..+.+.+.+...|+++...-. .....+.+.++++.. ..+.+++|.+.
T Consensus 113 -------------fpet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 113 -------------FPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp -------------CHHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred -------------CHHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 245566666667777887754211 124556677777663 57899999764
No 61
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=90.37 E-value=1.7 Score=28.00 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=48.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHH---hc-CCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVE---DL-KLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~-~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
...+++...++..|++++..|..- ...+.+.++++ +. +++.||.+.-.... .+.-+.-.++.||+=|
T Consensus 16 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~--------LpgvvA~~t~~PVIgV 87 (159)
T 3rg8_A 16 GHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNA--------LSGFVDGFVKGATIAC 87 (159)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCC--------HHHHHHHHSSSCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhh--------hHHHHHhccCCCEEEe
Confidence 345566667778899999887764 44555555544 33 57888888665543 3444666789999999
Q ss_pred eCCC
Q 031202 157 KGNP 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 88 P~~~ 91 (159)
T 3rg8_A 88 PPPS 91 (159)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8543
No 62
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=90.30 E-value=0.94 Score=35.25 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=79.1
Q ss_pred EEEEEecCC--hhhHHHHHHHHHHhcc--CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCCh
Q 031202 6 TVGVGMDNS--PNSKAALRWAADNLID--SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNP 81 (164)
Q Consensus 6 ~ILv~~d~s--~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.+|+=+..+ -.+-.+|..|++.+.. .+.+|..+++.++..... ........ ....
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~----------~~~~~~r~-----------~Fl~ 88 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW----------MQVGANRW-----------RFLQ 88 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC----------TTSCHHHH-----------HHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc----------cCCCHHHH-----------HHHH
Confidence 446666433 3344678888887654 567799999998763210 00000011 1234
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+..+.+.++..|..+. ++.|++.+.|.+.+++.+++.|+.... ..... .-.-......+....+++..+...
T Consensus 89 ~sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~-~~rd~~v~~~~~~~gi~~~~~~~~ 162 (543)
T 2wq7_A 89 QTLEDLDNQLRKLNSRLF--VVRGKPAEVFPRIFKSWRVEMLTFETD-IEPYS-VTRDAAVQKLAKAEGVRVETHCSH 162 (543)
T ss_dssp HHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHTTEEEEEEECC-CSHHH-HHHHHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecC-cCHHH-HHHHHHHHHHHHHcCCEEEEecCC
Confidence 566777777777888776 557999999999999999998888643 22221 111223445555567777766543
No 63
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=89.98 E-value=0.86 Score=35.34 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=28.4
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++++++|..+|-.++..+.+. .+.+++.+|+....
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~ 267 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGL 267 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCC
Confidence 68999999999998777665543 35789999986543
No 64
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=89.86 E-value=0.86 Score=26.84 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=36.6
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCC----ccccceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGL----GALKRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~----~~~~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
...+.|.+++++++++.||+|-.-. .+......-..++.+-.. +.||..+-.+..
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 3468899999999999999994311 111111122346677667 899999876654
No 65
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=89.39 E-value=3.6 Score=27.82 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=52.7
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
|.+|.|-++++.....++-.+.. ....+++|.++-. ....
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~-~~~l~~eI~~Vis--n~~~------------------------------------- 41 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQK-AGQLPCEVALLIT--DKPG------------------------------------- 41 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHH-TTCCSSEEEEEEE--SCSS-------------------------------------
T ss_pred CCEEEEEEeCCchHHHHHHHHHH-cCCCCcEEEEEEE--CCCC-------------------------------------
Confidence 36899999998777666666554 2334566655444 3210
Q ss_pred HHHHHHHhhhcCceEEEEEee--CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW--GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
....+.+.+.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 42 -a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 42 -AKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp -SHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred -cHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 02445666778887642111 11 24688899999999999997653
No 66
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=89.04 E-value=2.9 Score=29.96 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=28.4
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|+++|..+|-.++..+.+. .+.+++.+|+....
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g~ 57 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTGF 57 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSC
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCCC
Confidence 58999999999998777766554 35688999987543
No 67
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=88.39 E-value=4.3 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=28.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
-.+++|+++|..+|..++..+.. .|.++..+|+...
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~~ 222 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHSP 222 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEECT
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 46899999999999877766554 4789999999753
No 68
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=87.98 E-value=4.3 Score=30.04 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=59.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
-.+|+|+++|..+|-.++..+. ..+-++..+++....... ....-. ..+.
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~----~~G~~V~~v~~~~~~~~~---------------~~~~~~-----------s~~d 66 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQ----QQGYQVEGLFMKNWEEDD---------------GEEYCT-----------AAAD 66 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHH----TTCCEEEEEEEECCCCCS---------------HHHHHH-----------HHHH
T ss_pred CCEEEEEEEChHHHHHHHHHHH----HcCCeEEEEEEEcCcccc---------------ccCCCC-----------CHHH
Confidence 3589999999999876655443 347899999987532110 000000 1233
Q ss_pred HHHHHHHhhhcCceEEEEEee-----------------C---C---------hhhHHHHHHHh-cCCCEEEEeecCC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW-----------------G---D---------PREKLCDAVED-LKLDTLVVGSRGL 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~-----------------g---~---------~~~~I~~~a~~-~~~dliv~g~~~~ 130 (164)
.+.+++.|+..|+++...-.. | + -...+.+.+.+ .++|.|+.|++..
T Consensus 67 ~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~ 143 (380)
T 2der_A 67 LADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVR 143 (380)
T ss_dssp HHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCE
T ss_pred HHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccc
Confidence 556666777778776654221 1 0 12456677888 9999999997543
No 69
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=87.42 E-value=5.1 Score=27.17 Aligned_cols=83 Identities=12% Similarity=-0.077 Sum_probs=51.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.+|.|.++++.....++-.+.. ...+++| +.|+..+. .
T Consensus 12 ~~ri~vl~SG~gsnl~all~~~~--~~~~~eI--~~Vis~~~-a------------------------------------ 50 (215)
T 3da8_A 12 PARLVVLASGTGSLLRSLLDAAV--GDYPARV--VAVGVDRE-C------------------------------------ 50 (215)
T ss_dssp SEEEEEEESSCCHHHHHHHHHSS--TTCSEEE--EEEEESSC-C------------------------------------
T ss_pred CcEEEEEEeCChHHHHHHHHHHh--ccCCCeE--EEEEeCCc-h------------------------------------
Confidence 46899999998776555544432 2234455 44454431 0
Q ss_pred HHHHHHHhhhcCceEEEEEee--C---ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW--G---DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~--g---~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
...+.+.++|+++...-.. . ...+++.+..++.++|++|+....
T Consensus 51 --~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 51 --RAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp --HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred --HHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 1245666778887653111 1 124678899999999999997664
No 70
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=87.29 E-value=2.6 Score=32.28 Aligned_cols=130 Identities=15% Similarity=0.030 Sum_probs=73.4
Q ss_pred cEEEEEecCC--hhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 5 RTVGVGMDNS--PNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 5 ~~ILv~~d~s--~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
+.+|+=+..+ -.+-.+|..|++ .+.++..|++.++...... ..+......... ....+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~-----~~~~~~~~~~r~-----------~Fl~~ 65 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQT-----HQGFAKTGPWRS-----------NFLQQ 65 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBC-----TTSCBSSCHHHH-----------HHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhccc-----ccccCCCCHHHH-----------HHHHH
Confidence 4556666433 333456776664 3457889999887532110 000000011111 12345
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+..+.+.+++.|..+. ++.|++.+.|.+.+++.+++.|+...... ..... .-....+.+...++++..+..
T Consensus 66 sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~-rd~~v~~~l~~~gi~~~~~~~ 137 (489)
T 1np7_A 66 SVQNLAESLQKVGNKLL--VTTGLPEQVIPQIAKQINAKTIYYHREVT-QEELD-VERNLVKQLTILGIEAKGYWG 137 (489)
T ss_dssp HHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHHHTTEEEEEEECCCS-HHHHH-HHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHCCCcEE--EEECCHHHHHHHHHHHcCCCEEEEecccC-HHHHH-HHHHHHHHHHhcCCeEEEecC
Confidence 67777777777888876 56799999999999999998888864322 22111 112233344445566666554
No 71
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=86.69 E-value=7.7 Score=28.95 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=28.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
++++|+++|..+|-.++.++.+. ++.++..+|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 47999999999998888776543 3678999998765
No 72
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=86.01 E-value=6.5 Score=28.14 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=25.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
..++++.++| -+|..|+- ++...|..++.+|+.
T Consensus 179 ~~kvlvllSG-vDS~vaa~----ll~~~G~~v~~v~~~ 211 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIF----LMMKRGVEVIPVYIG 211 (307)
T ss_dssp TCEEEEECSS-HHHHHHHH----HHHHBTCEEEEEEES
T ss_pred CCcEEEEEeC-CcHHHHHH----HHHhCCCeEEEEEEE
Confidence 3689999999 88865443 344468999999998
No 73
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=86.01 E-value=6.6 Score=27.09 Aligned_cols=35 Identities=9% Similarity=-0.067 Sum_probs=26.9
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+|+|+++|..+|..++..+.++. .++.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 379999999999988888777664 35677777654
No 74
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=85.87 E-value=1.1 Score=29.67 Aligned_cols=36 Identities=8% Similarity=-0.075 Sum_probs=29.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
+++|++++.|+..+.++.+....|.+ .+.+++++--
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T 37 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVELKQ-HFDEVNILFS 37 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 57999999999999998888777754 4777777653
No 75
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=85.56 E-value=6.5 Score=26.59 Aligned_cols=36 Identities=17% Similarity=0.061 Sum_probs=28.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++++|.++|..+|-.++.++.+. +.+++.+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 468999999999998877776653 358888888754
No 76
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=84.32 E-value=1.7 Score=26.02 Aligned_cols=65 Identities=8% Similarity=0.161 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhhcCceEEEEEe-eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVY-WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
-+...+++.+...|++++..-. .+...+ ... ++|++++|..-+..+. .....+...++||.+++.
T Consensus 21 llv~km~~~a~~~gi~v~i~a~~~~~~~~----~~~--~~DvvLLgPQV~y~~~------~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 21 QLANAINEGANLTEVRVIANSGAYGAHYD----IMG--VYDLIILAPQVRSYYR------EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTSCTT----TGG--GCSEEEECGGGGGGHH------HHHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHHHHCCCceEEEEcchHHHHh----hcc--CCCEEEEChHHHHHHH------HHHHHhhhcCCcEEEeCH
Confidence 3556667777778888876432 233222 223 4699999976443322 244566667899998874
No 77
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=84.25 E-value=4.4 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDL 118 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~ 118 (164)
+..++.+.+..++.|.++.+..--++....+.+.+++.
T Consensus 87 qnrleefsrevrrrgfevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 87 QNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHh
Confidence 56778888888889999887433346667777777664
No 78
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=84.20 E-value=7.5 Score=26.19 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=29.0
Q ss_pred HHhhhcCceEEEEEee--CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 89 TLSRTKGAKVVAKVYW--GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+.++++|+++...-.. .+ ..+++.+..++.++|++|+....
T Consensus 51 ~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 51 AKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred HHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4667779887753211 12 24789999999999999997653
No 79
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=84.08 E-value=2.3 Score=28.20 Aligned_cols=34 Identities=3% Similarity=-0.088 Sum_probs=27.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
++|++++.|+..+.++.+..-.|.+. +.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 79999999999888888887777554 77777664
No 80
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=83.97 E-value=1.2 Score=34.69 Aligned_cols=110 Identities=18% Similarity=0.261 Sum_probs=62.6
Q ss_pred CCCCcEEEEEec--CChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCC
Q 031202 1 MSKARTVGVGMD--NSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLT 78 (164)
Q Consensus 1 m~~~~~ILv~~d--~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|++.+.+|+=+. .--.+-.||..|++ .+.+|..|+|.++......... ...|......... .
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~-~~~g~~~~g~~r~-----------~ 64 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSA-FSPGSSRAGVNRI-----------R 64 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTS-SSSBCSSCBHHHH-----------H
T ss_pred CCCCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccc-cccccccCCHHHH-----------H
Confidence 555555566553 32333456666654 4568999999976422100000 0000000111111 1
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
...+.+..+.+.++..|.... ++.|++.+.|.+.+++.+++.|+....
T Consensus 65 Fl~~sL~~L~~~L~~~G~~L~--v~~G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 65 FLLESLKDLDSSLKKLGSRLL--VFKGEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHTTSCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHcCCceE--EEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 234567777777777787766 567999999999999999999888643
No 81
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=83.68 E-value=5 Score=24.90 Aligned_cols=71 Identities=20% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC--CccEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS--SCPVTVVK 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~--~~pVliv~ 157 (164)
...+...++..|.++.. ....-+.+++++.+++.++|+|++......... .+..+.+.+-... +++|++=-
T Consensus 20 ~~~v~~~l~~~G~~Vi~-lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 20 NKILDHAFTNAGFNVVN-IGVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHHHHTTCEEEE-EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEEC
Confidence 34566677788988875 223468999999999999999999876433222 2344555554432 36676543
No 82
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=83.32 E-value=7 Score=29.87 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
+-.+|..|++.+ .+|..+++.++..... ........ ....+.+..+.+.++..|.
T Consensus 17 Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~----------~~~~~~r~-----------~fl~~sL~~L~~~L~~~G~ 71 (484)
T 1owl_A 17 DNIGLAAARAQS----AQLIGLFCLDPQILQS----------ADMAPARV-----------AYLQGCLQELQQRYQQAGS 71 (484)
T ss_dssp SCHHHHHHHHHC----SCEEEEEEECHHHHTC----------TTCCHHHH-----------HHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHhcC----CCEEEEEEEcchhhcC----------CCCCHHHH-----------HHHHHHHHHHHHHHHHCCC
Confidence 345677776632 3788999987652110 00000001 1234566677777777788
Q ss_pred eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 97 KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 97 ~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+. ++.|++.+.|.+.+++.+++.|+....-.. ... -.-....+.+...++++..+...
T Consensus 72 ~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p-~~~-~rd~~v~~~l~~~gi~~~~~~~~ 130 (484)
T 1owl_A 72 RLL--LLQGDPQHLIPQLAQQLQAEAVYWNQDIEP-YGR-DRDGQVAAALKTAGIRAVQLWDQ 130 (484)
T ss_dssp CEE--EEESCHHHHHHHHHHHTTCSEEEEECCCSH-HHH-HHHHHHHHHHHHTTCEEEEECCS
T ss_pred eEE--EEeCCHHHHHHHHHHHcCCCEEEEeccCCh-hHH-HHHHHHHHHHHHcCcEEEEecCC
Confidence 876 557999999999999999999998644322 211 11233444555667888777643
No 83
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=82.42 E-value=3.5 Score=32.06 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=56.2
Q ss_pred HHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhc---C
Q 031202 19 AALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTK---G 95 (164)
Q Consensus 19 ~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 95 (164)
.||..|++.+. .+.+|..|+|.++..... ........ ....+.+..+.+.++.. |
T Consensus 20 ~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~----------~~~~~~r~-----------~Fl~~sL~~L~~~L~~~~~~G 77 (538)
T 3tvs_A 20 PALLAALADKD-QGIALIPVFIFDGESAGT----------KNVGYNRM-----------RFLLDSLQDIDDQLQAATDGR 77 (538)
T ss_dssp HHHHTTTGGGT-TTCBCCEEEEECSSSSCS----------TTCCHHHH-----------HHHHHHHHHHHHHGGGSCSSS
T ss_pred HHHHHHHHhCC-CCCCEEEEEecChhhhcc----------CCCCHHHH-----------HHHHHHHHHHHHHHHHhhcCC
Confidence 46766766543 455899999998764221 00001111 12345667777777777 7
Q ss_pred ceEEEEEeeCChhhHHHHHHHhcCCCEEEEee
Q 031202 96 AKVVAKVYWGDPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~ 127 (164)
...- ++.|++.+.|.+.+++.+++.|+...
T Consensus 78 ~~L~--v~~G~~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 78 GRLL--VFEGEPAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp SCCE--EEESCHHHHHHHHHHHHCEEEECEEC
T ss_pred CeEE--EEeCCHHHHHHHHHHHcCCCEEEEcc
Confidence 7765 56899999999999999999888753
No 84
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=82.38 E-value=3.9 Score=26.25 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=44.5
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC--CccEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS--SCPVTVVK 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~--~~pVliv~ 157 (164)
...+...++..|.++.. .-...+.+.+++.+++.++|+|.+......... .+..+.+.+-... +++|++=-
T Consensus 35 ~~~va~~l~~~G~eVi~-lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~--~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 35 AKVVARALRDAGFEVVY-TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLH--LMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp HHHHHHHHHHTTCEEEC-CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHH--HHHHHHHHHHHTTCTTSCEEEEE
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHH--HHHHHHHHHHhcCCCCCEEEEeC
Confidence 34555667777887763 222368899999999999999999876433222 1233444443332 37777643
No 85
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=80.98 E-value=11 Score=25.60 Aligned_cols=83 Identities=11% Similarity=-0.072 Sum_probs=51.1
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+|.|.++++.....++-.+..- . .+.+ ++.|+...... ..
T Consensus 6 ~riavl~SG~Gsnl~all~~~~~-~-~~~e--I~~Vis~~~~a---------------------------------~~-- 46 (215)
T 3tqr_A 6 LPIVVLISGNGTNLQAIIGAIQK-G-LAIE--IRAVISNRADA---------------------------------YG-- 46 (215)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHT-T-CSEE--EEEEEESCTTC---------------------------------HH--
T ss_pred cEEEEEEeCCcHHHHHHHHHHHc-C-CCCE--EEEEEeCCcch---------------------------------HH--
Confidence 48999999987776666555442 2 3444 44455443110 00
Q ss_pred HHHHHHhhhcCceEEEEEee--C---ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 85 DILDTLSRTKGAKVVAKVYW--G---DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~--g---~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+++.|+++...-.. . ...+++.+..++.++|++|+....
T Consensus 47 ---~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 47 ---LKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp ---HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred ---HHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 24566778887642111 1 124689999999999999997653
No 86
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=80.88 E-value=11 Score=25.52 Aligned_cols=62 Identities=6% Similarity=-0.033 Sum_probs=38.0
Q ss_pred HHHhhhcCceEEEEEeeC--C---hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 88 DTLSRTKGAKVVAKVYWG--D---PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g--~---~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+++.+.|+++...-... + ..+++.+..++.++|++|+...++- ....++...+..++=+++
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHp 110 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRI---------LSHNFLKYFPNKVINIHP 110 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC---------CCHHHHTTSTTCEEEEES
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCchhh---------CCHHHHhhccCCeEEEcC
Confidence 456677798876421111 1 2467889999999999999765321 234455555555555543
No 87
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=80.71 E-value=4.5 Score=29.00 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|+..+.+.|..+-.. +..|+......+.....++|.||+.+...+ ..+.+++++.+||+
T Consensus 54 FE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~---------~~~~la~~~~vPVI 118 (304)
T 3r7f_A 54 FEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDE---------YYEELVSQVNIPIL 118 (304)
T ss_dssp HHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTT---------CHHHHHHHCSSCEE
T ss_pred HHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 333444455554432 223566667777777888899999766432 35667788999976
No 88
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=79.97 E-value=17 Score=28.17 Aligned_cols=132 Identities=17% Similarity=0.080 Sum_probs=75.5
Q ss_pred cEEEEEecCC--hhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChh
Q 031202 5 RTVGVGMDNS--PNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPE 82 (164)
Q Consensus 5 ~~ILv~~d~s--~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
+.+|+=+..+ -.+-.+|..|+.. +.+|..+++.++....... ..+......... ....+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~----~~~~~~~~~~r~-----------~Fl~~ 100 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTH----FFNFPKTGALRG-----------GFLME 100 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCT----TTCCBSSCHHHH-----------HHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccc----cccCCCCCHHHH-----------HHHHH
Confidence 3455555332 2234566666653 4578999998875321100 000000011111 12345
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC--ccEEEEeCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS--CPVTVVKGN 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~--~pVliv~~~ 159 (164)
.+..+.+.+++.|..+. ++.|++.+.|.+.+++.+++.|+...... ..... .-....+.+.... |++..+...
T Consensus 101 sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-p~~~~-rd~~v~~~l~~~gv~i~~~~~~~~ 175 (525)
T 2j4d_A 101 CLVDLRKNLMKRGLNLL--IRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVD-VERLVNQGLKRVGNSTKLELIWGS 175 (525)
T ss_dssp HHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHHTCSEEEEECCCS-HHHHH-HHHHHHHHHHTTCSSCEEEEECCS
T ss_pred HHHHHHHHHHHcCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEeccCC-HHHHH-HHHHHHHHHHhcCCceEEEEecCC
Confidence 67777777777888776 56799999999999999999999864432 22211 1223444555555 787776654
No 89
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=79.84 E-value=17 Score=27.34 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=27.8
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
-++++|+++|.-+|-.++.++.+ .|.+++.+++...
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 36899999999888777666543 3788999888754
No 90
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=79.39 E-value=5.6 Score=26.53 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=44.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC---CccEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS---SCPVTVVK 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~---~~pVliv~ 157 (164)
...+...++..|.++.. ....-+.+.+++.+++.++|+|.+.......... +..+.+.+=+.. ++||++--
T Consensus 105 ~~~va~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 105 KNLVAMMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHHHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEES
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEEC
Confidence 34555666677877664 3335689999999999999999997653332221 223344343332 27877753
No 91
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=78.93 E-value=14 Score=25.84 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=33.5
Q ss_pred hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 108 REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+.|.+.+++.++|+|+.-............+..+...++..+.|++.+.
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~e 186 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWE 186 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEec
Confidence 35567788999999999864433334444555666666777777777663
No 92
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=78.75 E-value=16 Score=26.20 Aligned_cols=40 Identities=8% Similarity=-0.079 Sum_probs=27.9
Q ss_pred HhhhcCceEEEEEee-C---ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 90 LSRTKGAKVVAKVYW-G---DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~-g---~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+++.|+++...-.. . ...+++.+..++.++|++|+....
T Consensus 148 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 148 MVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 466778887653111 1 124679999999999999997653
No 93
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=78.71 E-value=9.4 Score=26.49 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=45.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVK 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~ 157 (164)
...+...++..|.++.. ....-+.+.+++.+++.++|+|.+......... .+..+.+.+-+. .++||++--
T Consensus 140 ~~iva~~L~~~G~~Vi~-LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~--~~~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 140 KNIVTALLRANGYNVVD-LGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMY--AFKEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHHHHHHHHTTCEEEE-EEEECCSHHHHHHHHHHCCSEEEEECCCTTTTT--HHHHHHHHHHTTTCCCCEEEES
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHH--HHHHHHHHHHhcCCCCcEEEEC
Confidence 44555667778988765 333478999999999999999999765333222 122334433333 247877754
No 94
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=78.12 E-value=6.5 Score=28.33 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=44.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHh-cCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVV-TNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~-~~~~~pVliv~~ 158 (164)
.+..+.+.+.++..++++....... .-...+.+.+...++|+||+..-. +. +..++..++ ...++|+.++|-
T Consensus 41 ~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD-GT-----v~~v~~~l~~~~~~~pl~iIP~ 114 (337)
T 2qv7_A 41 KRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGD-GT-----LNEVVNGIAEKPNRPKLGVIPM 114 (337)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH-HH-----HHHHHHHHTTCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc-hH-----HHHHHHHHHhCCCCCcEEEecC
Confidence 3556777888888888887654443 344556555555677877664321 11 223444443 345799999996
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
.+
T Consensus 115 GT 116 (337)
T 2qv7_A 115 GT 116 (337)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 95
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=77.55 E-value=5 Score=30.21 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-Chh---hHHHHHHHhcCC-CEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-DPR---EKLCDAVEDLKL-DTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~~~---~~I~~~a~~~~~-dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.+...++..|++++..|..- ... ..+.+.++..++ +.||.+....+. .+.-|.-.+++||+=||
T Consensus 280 ~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~--------Lpgvva~~t~~PVIgvP 351 (425)
T 2h31_A 280 HCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNG--------LGPVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCC--------HHHHHHHHCSSCEEECC
T ss_pred HHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccc--------hHhHHhccCCCCEEEee
Confidence 35566667778899999887754 333 444444556667 466666554433 34446667899999999
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 96
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=77.39 E-value=13 Score=26.36 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=25.0
Q ss_pred HhhhcCceEEEEEe-eC---ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 90 LSRTKGAKVVAKVY-WG---DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 90 ~~~~~~~~~~~~v~-~g---~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.++++|+++...-. .. ...+++.+..++.++|++|+....
T Consensus 132 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym 175 (287)
T 3nrb_A 132 VSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYM 175 (287)
T ss_dssp CCCCTTSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHcCCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhh
Confidence 45556777664211 11 123568888888888998887553
No 97
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=77.29 E-value=3.1 Score=27.73 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=27.8
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-++|++++.|+..+.++.+..-.|.+ .+.+++++-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 47999999999998888887777644 577777664
No 98
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=77.19 E-value=4.4 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=27.3
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++|++++.|+..+.++.+..-.|.+ .+.+++++-
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~ 39 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKS-KFDEVNVIA 39 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEE
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 37999999999999888887666544 577776654
No 99
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=76.87 E-value=14 Score=24.78 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=51.3
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++|.|.++++.....++-.+.. ....+.+|.++...++.. .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~~~~I~~Vvs~~~~~-----------------------------------~--- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNSSAQIDIVISNKAAV-----------------------------------A--- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTCSCEEEEEEESSTTC-----------------------------------H---
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCCCcEEEEEEeCCCCh-----------------------------------H---
Confidence 3788999998877666654443 122355555544433221 0
Q ss_pred HHHHHHhhhcCceEEEEEee--CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 85 DILDTLSRTKGAKVVAKVYW--GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
..+++.+.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 42 --~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 42 --GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp --HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred --HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 125667789887642111 12 23678899999999999998653
No 100
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=76.77 E-value=2.9 Score=28.91 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=34.1
Q ss_pred HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 112 CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 112 ~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
++.+++.++|++|+.+.+..- -....++.++...++|.+|+.+.+
T Consensus 57 ~~~~~~~~pDfvI~isPN~a~----PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 57 LDIAEDFEPDFIVYGGPNPAA----PGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHCCSEEEEECSCTTS----HHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred hhhhhhcCCCEEEEECCCCCC----CCchHHHHHHHhCCCCEEEEcCCc
Confidence 344588899999998775432 124568899999999999998655
No 101
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=76.42 E-value=9.4 Score=27.08 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc-CCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT-NSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~-~~~~pVliv~~ 158 (164)
.+..+.+...++..+++++...... +-..++.+.+.+ ++|.||+..-. +. +..++..+.. ..++|+.++|-
T Consensus 25 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGD-GT-----l~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 25 HTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGGD-GT-----VFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEECH-HH-----HHHHHHHHTTCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEccc-hH-----HHHHHHHHhhCCCCCcEEEecC
Confidence 3455677777788888888765443 445556665544 67877764321 11 1223444444 25789999996
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
.+
T Consensus 98 Gt 99 (304)
T 3s40_A 98 GT 99 (304)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 102
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=75.55 E-value=3 Score=31.54 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCceE
Q 031202 19 AALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAKV 98 (164)
Q Consensus 19 ~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
.||..|++ .+.+|..+++.++..... . ........ ....+.+..+.+.+++.|..+
T Consensus 17 ~aL~~A~~----~~~~v~~vfi~dp~~~~~-------~--~~~~~~r~-----------~Fl~~sL~~L~~~L~~~G~~L 72 (440)
T 2e0i_A 17 TGLNYALS----ECDRVIPVFIADPRQLIN-------N--PYKSEFAV-----------SFMINSLLELDDELRKKGSRL 72 (440)
T ss_dssp HHHHHHHH----HSSEEEEEEEECHHHHSS-------C--TTCCHHHH-----------HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHh----cCCCEEEEEEeChhhhcc-------C--CcCCHHHH-----------HHHHHHHHHHHHHHHHcCCeE
Confidence 46777766 356899999988752110 0 00000011 123456677777777778877
Q ss_pred EEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 99 VAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 99 ~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
. ++.|++.+.|.+.++ +++.|+...... ... .-.-....+.+...++++..+...
T Consensus 73 ~--v~~g~~~~~l~~l~~--~~~~v~~~~~~~-~~~-~~rd~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 73 N--VFFGEAEKVVSRFFN--KVDAIYVNEDYT-PFS-ISRDEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp E--EEESCHHHHHHHHCT--TCSEEEEECCCS-HHH-HHHHHHHHHHHHTTTCEEEEECCS
T ss_pred E--EEECCHHHHHHHHHc--CCCEEEEecccC-hHH-HHHHHHHHHHHHHcCceEEEecCC
Confidence 6 557999999999999 889988854422 221 112234455566667888777654
No 103
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=75.38 E-value=1.5 Score=27.56 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=35.5
Q ss_pred hhhHHHHHHHhcCCCEEEEeec-CCccccc---eeeccchhHHhcCCCccEEEEeCCCC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSR-GLGALKR---VLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~-~~~~~~~---~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
..+.|.+.+++.+++.||+|-. +.++... ...-..++.+-...+.||..+-.+..
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERlT 99 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLS 99 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 4789999999999999999943 1111111 11123455565556799999865443
No 104
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=74.23 E-value=20 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=28.1
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++++++|.-+|..++..+.+. .+.+++.+|+....
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g~ 264 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNGL 264 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSC
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCCC
Confidence 68999999999987776665542 35789999988653
No 105
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=73.78 E-value=11 Score=27.12 Aligned_cols=71 Identities=15% Similarity=0.311 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEe-ecCCccccceeeccchhHHhc---CCCccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVG-SRGLGALKRVLLGSVSNHVVT---NSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g-~~~~~~~~~~~~gs~~~~v~~---~~~~pVliv~ 157 (164)
..+.+.+.+...++++....... .-...+.+.+...++|+||+. ..|. +..++..+.. ..++|+.++|
T Consensus 45 ~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGT-------l~~v~~~l~~~~~~~~~plgiiP 117 (332)
T 2bon_A 45 PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGT-------INEVSTALIQCEGDDIPALGILP 117 (332)
T ss_dssp HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHH-------HHHHHHHHHHCCSSCCCEEEEEE
T ss_pred hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchH-------HHHHHHHHhhcccCCCCeEEEec
Confidence 34566667777888877654432 334455555545567877654 3321 2334555553 4678999998
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-.+
T Consensus 118 ~Gt 120 (332)
T 2bon_A 118 LGT 120 (332)
T ss_dssp CSS
T ss_pred CcC
Confidence 644
No 106
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=73.00 E-value=4.6 Score=23.41 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
++.+..+.......|.++.+ ++.- ...+.|.+..+.+++.++|+--..+.
T Consensus 12 eetlrkfkdiikkngfkvrt-vrspqelkdsieelvkkynativvvvvddke 62 (134)
T 2l69_A 12 EETLRKFKDIIKKNGFKVRT-VRSPQELKDSIEELVKKYNATIVVVVVDDKE 62 (134)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-ECSHHHHHHHHHHHTTCCCCEEEEEECSSHH
T ss_pred HHHHHHHHHHHHhcCceEEE-ecCHHHHHHHHHHHHHHhCCeEEEEEEccHH
Confidence 56667777777777877776 4443 55667777777777777776655443
No 107
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=72.87 E-value=16 Score=25.85 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=38.4
Q ss_pred ceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+.| .+.+++.++|-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 70 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (294)
T 2ehh_A 70 IKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIP 135 (294)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4444434333555554 677889999999887654432221111122346778889999998643
No 108
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=72.71 E-value=14 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCC-hhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGD-PREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
.+++.+.+.+.+...|++++..-.... ..+.+.....+. |.||+|+....
T Consensus 18 T~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--d~ii~Gspty~ 68 (159)
T 3fni_A 18 SDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRC--TGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTE--EEEEEECCBTT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhC--CEEEEEcCcCC
Confidence 356667777777777887765433333 355565555555 99999987654
No 109
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=72.67 E-value=15 Score=23.23 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+.+.+.+.+.+...|++++..-......+.+.....+. |.||+|+....
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--d~ii~Gspty~ 63 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSA--RGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHC--SEEEEECCBSS
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhC--CEEEEEcCCcC
Confidence 56666677777777887765433333345555555555 99999987654
No 110
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=72.66 E-value=19 Score=25.59 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=39.1
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++...-.....+--+-.--..|+..++.||+++.-+
T Consensus 81 rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 147 (301)
T 1xky_A 81 RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVP 147 (301)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3444443433355554 4667889999998887654433221111122356788899999998643
No 111
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=72.08 E-value=6.5 Score=28.53 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=27.6
Q ss_pred EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 102 VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 102 v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
+..|+......+....+ +|.||+.+... ...+.+++++.+||+
T Consensus 84 ~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 126 (328)
T 3grf_A 84 VGGKETVQDTAEVFSRM-VDICTARLATK---------EMMREMAQHASVPCI 126 (328)
T ss_dssp -----CHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred CCCCCCHHHHHHHHHhh-CCEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 34465566666666666 89999976533 346778888999976
No 112
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=71.98 E-value=19 Score=25.67 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=39.5
Q ss_pred CceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+.| .+.+++.++|-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 81 rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 147 (306)
T 1o5k_A 81 KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVP 147 (306)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34554434333555544 677889999999887654433221111123356788899999998643
No 113
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=71.56 E-value=16 Score=26.16 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=29.5
Q ss_pred eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 103 YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 103 ~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
..|+......+....+ +|.||+.+... ...+.+.+++.+||+=
T Consensus 79 ~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~la~~~~vPVIN 121 (299)
T 1pg5_A 79 AKGENLADTIRMLNNY-SDGIVMRHKYD---------GASRFASEISDIPVIN 121 (299)
T ss_dssp --CCCHHHHHHHHHHH-CSEEEEEESSB---------THHHHHHHHCSSCEEE
T ss_pred cCCCCHHHHHHHHHHh-CCEEEEeCCCh---------hHHHHHHHhCCCCEEe
Confidence 3456666666776777 79999976643 2366678889999873
No 114
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=71.33 E-value=15 Score=25.98 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=38.4
Q ss_pred CceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+-.-+...+..+.| .+.+++.++|-+++.........+--+-..-..|+..++.||+++.-
T Consensus 70 r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 70 RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34544434333555544 66688899999888765443222111112335688888999999864
No 115
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=71.20 E-value=19 Score=26.25 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=39.2
Q ss_pred CceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+.| .+.+++.++|-+++...-......--+-.--..|+..++.||+++.-+
T Consensus 100 rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 166 (343)
T 2v9d_A 100 RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFP 166 (343)
T ss_dssp SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34544434333555554 677889999999887654432221111122346788889999998643
No 116
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=71.18 E-value=1.2 Score=28.48 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=34.1
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCC-ccccce---eeccchhHHhcCCCccEEEEeCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGL-GALKRV---LLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~-~~~~~~---~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
...+.|.+.+++++++.||+|-.-. ++.... ..-..+..+....++||..+-.+.
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 4678899999999999999994311 111100 001233445555589999886654
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=71.00 E-value=32 Score=26.09 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChh---hHHHHHHHhcCCCEEEEeecCCcc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPR---EKLCDAVEDLKLDTLVVGSRGLGA 132 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~---~~I~~~a~~~~~dliv~g~~~~~~ 132 (164)
+.+.+..+....++++.......++. ...++.++..++|++++-+.++..
T Consensus 143 a~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 143 AYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred HHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 34555566666677655322223544 334556666778888887666543
No 118
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=70.77 E-value=17 Score=25.69 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=38.4
Q ss_pred ceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+.| .+.+++.++|-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 70 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (289)
T 2yxg_A 70 VQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVP 135 (289)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 4444433333555544 677889999999887654432221111122346778889999998643
No 119
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=70.73 E-value=18 Score=25.92 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=38.9
Q ss_pred CceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 95 GAKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+.+-.-+.. +..+.| .+.+++.++|-+++.........+--+-.--..|+..++.||+++.
T Consensus 81 rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 81 RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3555544544 655554 6778899999999876544332211111223467888899999997
No 120
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=70.35 E-value=9.7 Score=25.40 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=27.4
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+|++++.|+..+.++.+..-.|.+..+.+++++-
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 7999999999998888887777554478877664
No 121
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=70.26 E-value=16 Score=25.85 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=37.2
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 70 r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3a5f_A 70 RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVP 136 (291)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECH
T ss_pred CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3555443433355554 4677889999999887654432211101111234667788999998643
No 122
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=69.95 E-value=7.6 Score=27.93 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=29.8
Q ss_pred eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 103 YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 103 ~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
..|+......+....+ +|.||+.+... ...+.+++++.+||+=
T Consensus 85 ~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVIN 127 (309)
T 4f2g_A 85 GRGEPVEDSAQVISRM-VDIIMIRTFEQ---------DIIQRFAENSRVPVIN 127 (309)
T ss_dssp TBEECHHHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHTCSSCEEE
T ss_pred CCCCCHHHHHHHHHHh-CCEEEEecCCH---------HHHHHHHHhCCCCEEE
Confidence 3455555566666666 79999976532 3466788999999873
No 123
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=69.69 E-value=21 Score=23.56 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHH-hcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVE-DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~-~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
..+.+.+.+.+.+.+.+++ +..++..+++...-+ ..++|.||= + |.++..+=++.+.||+-++-
T Consensus 14 ~~l~~~~~~i~~e~~~~i~--i~~~~l~~~v~~a~~~~~~~dVIIS--R----------Ggta~~lr~~~~iPVV~I~~ 78 (196)
T 2q5c_A 14 ENLLNLFPKLALEKNFIPI--TKTASLTRASKIAFGLQDEVDAIIS--R----------GATSDYIKKSVSIPSISIKV 78 (196)
T ss_dssp HHHHHHHHHHHHHHTCEEE--EEECCHHHHHHHHHHHTTTCSEEEE--E----------HHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHHhhhCCceE--EEECCHHHHHHHHHHhcCCCeEEEE--C----------ChHHHHHHHhCCCCEEEEcC
Confidence 3455566666666666554 566776555543322 467784442 2 45677777778899998874
No 124
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=69.49 E-value=19 Score=26.09 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=38.9
Q ss_pred CceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+-.-+...+..+.| .+.+++.++|-+++...-.....+--+-.--..|+..++.||+++.-
T Consensus 103 rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 103 RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 35554444444555554 67788999999988765443322111112234677888999999864
No 125
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=69.36 E-value=21 Score=25.36 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=39.0
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 77 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (301)
T 3m5v_A 77 KVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVP 143 (301)
T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 3455443333344444 4567889999999998654433221111123456778889999999643
No 126
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=69.17 E-value=18 Score=25.76 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=38.7
Q ss_pred CceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+.| .+.+++.++|-+++...-.....+--+-.--..|+..++.||+++.-+
T Consensus 85 rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 151 (304)
T 3cpr_A 85 RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDIP 151 (304)
T ss_dssp TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34544434333555554 677889999998887654432221111122346778889999998643
No 127
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=69.02 E-value=25 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
-+.+.+.++|+++-.. ..--.+++.+..++.++|++|+...+
T Consensus 54 ~v~~~A~~~gIpv~~~--~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQP--ENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHHTTCCEECC--SCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHHcCCCEEcc--CcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 3556777789887421 11113578899999999999997664
No 128
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=68.63 E-value=28 Score=24.62 Aligned_cols=40 Identities=5% Similarity=-0.127 Sum_probs=25.3
Q ss_pred HhhhcCceEEEEEee-CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 90 LSRTKGAKVVAKVYW-GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~-g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.++++|+++...-.. .+ ..+++.+..++.++|++|+....
T Consensus 133 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 133 GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp CTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 345567777642111 11 23568888888889999987553
No 129
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=68.62 E-value=17 Score=25.65 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=38.9
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+++++.++|-+++.........+--+-..-..|+..++.||+++.-+
T Consensus 69 r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (292)
T 2vc6_A 69 RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIP 135 (292)
T ss_dssp SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 3555444444455554 4677899999999887654432211111112346778889999998643
No 130
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=68.52 E-value=16 Score=21.72 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVliv~ 157 (164)
....+.+...+...|..+.. ..+ .++.++..+...+|+|++...- ....++ .....+-. ...+||+++-
T Consensus 16 ~~~~~~l~~~l~~~g~~v~~---~~~-~~~a~~~l~~~~~dlvi~d~~l-~~~~g~---~~~~~l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 16 PDIARLLNLMLEKGGFDSDM---VHS-AAQALEQVARRPYAAMTVDLNL-PDQDGV---SLIRALRRDSRTRDLAIVVVS 87 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ECS-HHHHHHHHHHSCCSEEEECSCC-SSSCHH---HHHHHHHTSGGGTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCeEEE---ECC-HHHHHHHHHhCCCCEEEEeCCC-CCCCHH---HHHHHHHhCcccCCCCEEEEe
Confidence 34555666666667776432 334 3445566677889999997542 111111 12333332 2458888875
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 88 ~ 88 (140)
T 3grc_A 88 A 88 (140)
T ss_dssp T
T ss_pred c
Confidence 4
No 131
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=68.29 E-value=15 Score=21.37 Aligned_cols=72 Identities=8% Similarity=0.035 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~ 157 (164)
....+.+...+...|..+.. ..+ .++.++..++..+|+|++...-. ...+. ...+.+-.. ..+||+++-
T Consensus 13 ~~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dlii~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s 84 (127)
T 3i42_A 13 QAAAETFKELLEMLGFQADY---VMS-GTDALHAMSTRGYDAVFIDLNLP-DTSGL---ALVKQLRALPMEKTSKFVAVS 84 (127)
T ss_dssp HHHHHHHHHHHHHTTEEEEE---ESS-HHHHHHHHHHSCCSEEEEESBCS-SSBHH---HHHHHHHHSCCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEE---ECC-HHHHHHHHHhcCCCEEEEeCCCC-CCCHH---HHHHHHHhhhccCCCCEEEEE
Confidence 34555666667666764432 334 44555666778899999986522 11111 234444443 458999886
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 85 ~~~ 87 (127)
T 3i42_A 85 GFA 87 (127)
T ss_dssp CC-
T ss_pred CCc
Confidence 543
No 132
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=68.15 E-value=25 Score=23.87 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHH---hcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVE---DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~---~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.+.+++.+.+.+...+..+..++..+++...-+ ..++|.||= + |.++..+=++.+.||+-++
T Consensus 22 ~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIIS--R----------Ggta~~Lr~~~~iPVV~I~ 89 (225)
T 2pju_A 22 TRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIA--A----------GSNGAYLKSRLSVPVILIK 89 (225)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEE--E----------HHHHHHHHTTCSSCEEEEC
T ss_pred HHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEe--C----------ChHHHHHHhhCCCCEEEec
Confidence 456667777777666666666767776665554322 235785442 2 4567777777889999887
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
-
T Consensus 90 v 90 (225)
T 2pju_A 90 P 90 (225)
T ss_dssp C
T ss_pred C
Confidence 4
No 133
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=68.02 E-value=11 Score=27.38 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|+..+.+.|..+-.. +..|+......+....+ +|.||+.+... ...+.+++++.+||+
T Consensus 81 FE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~lA~~~~vPVI 144 (339)
T 4a8t_A 81 FETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRL-VDILMARVERH---------HSIVDLANCATIPVI 144 (339)
T ss_dssp HHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHH-CSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred HHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEecCcH---------HHHHHHHHhCCCCEE
Confidence 333444455554332 23355666666676777 89999976532 346678888999986
No 134
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=67.84 E-value=15 Score=27.53 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
..+.+..+.+.+++.|..+. ++.|++.+.|.+.+++.+++.|+....-.. .... .-+.|...+++++..+...
T Consensus 50 l~~sL~~l~~~L~~~g~~l~--~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~-~~~~----rd~~v~~~l~i~~~~~~~~ 122 (420)
T 2j07_A 50 FLENVRALREAYRARGGALW--VLEGLPWEKVPEAARRLKAKAVYALTSHTP-YGRY----RDGRVREALPVPLHLLPAP 122 (420)
T ss_dssp HHHHHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHHHTTCSEEEEECCCSH-HHHH----HHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecccCh-hHHH----HHHHHHHHcCCeEEEeCCC
Confidence 34566777777777888776 567999999999999999999998644322 2111 1122222227777777643
No 135
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=67.67 E-value=11 Score=25.43 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEE--eecCCccccceeeccchhHHhcCC---CccEEEE
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVV--GSRGLGALKRVLLGSVSNHVVTNS---SCPVTVV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~--g~~~~~~~~~~~~gs~~~~v~~~~---~~pVliv 156 (164)
...+...++..|.++.. ....-+.+.|++.+++.++|+|.+ ......... .+..+.+.+-... ++||++-
T Consensus 109 ~~iv~~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 109 HRLVTTMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEE
Confidence 34455677778888764 334568999999999999999999 433222111 2344555555543 4777764
No 136
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=66.98 E-value=19 Score=22.07 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHh---cCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVV---TNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~---~~~~~pVliv~ 157 (164)
....+.+...++..|..... ...+..+ -++..++..+|+|++-.. -+...++ ...+.+= ...+.||+++-
T Consensus 22 ~~~r~~l~~~L~~~G~~~v~--~a~~g~~-al~~~~~~~~DlillD~~-MP~mdG~---el~~~ir~~~~~~~ipvI~lT 94 (134)
T 3to5_A 22 STMRRIVKNLLRDLGFNNTQ--EADDGLT-ALPMLKKGDFDFVVTDWN-MPGMQGI---DLLKNIRADEELKHLPVLMIT 94 (134)
T ss_dssp HHHHHHHHHHHHHTTCCCEE--EESSHHH-HHHHHHHHCCSEEEEESC-CSSSCHH---HHHHHHHHSTTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEE--EECCHHH-HHHHHHhCCCCEEEEcCC-CCCCCHH---HHHHHHHhCCCCCCCeEEEEE
Confidence 45566677777777875321 1334333 345667778999999754 2322221 1233332 22458999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 95 a~ 96 (134)
T 3to5_A 95 AE 96 (134)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 137
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=66.38 E-value=34 Score=24.65 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC--C-ccccceeecc-chhHHhcCCCccEEEEeC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG--L-GALKRVLLGS-VSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~--~-~~~~~~~~gs-~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.|+++... ..+..-.++ + ++|.+++|... . +..... .|+ ...-++++..+|++++-+
T Consensus 165 a~~L~~~gI~vtli--~Dsa~~~~m---~--~vd~VivGAd~i~~nG~v~nk-iGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 165 AKALCHLNVPVTVV--LDAAVGYIM---E--KADLVIVGAEGVVENGGIINK-IGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp HHHHHTTTCCEEEE--CGGGHHHHG---G--GCSEEEEECSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEE--ehhHHHHHH---H--hCCEEEECceEEecCCCeeeh-hhhHHHHHHHHHhCCCEEEEec
Confidence 44455678888752 333333333 3 57999999874 2 222222 333 344567788899999844
No 138
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=66.16 E-value=28 Score=23.69 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=29.0
Q ss_pred HHHhhhcCceEEEEEee--C---ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 88 DTLSRTKGAKVVAKVYW--G---DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~--g---~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+++.+.|+++...-.. . ...+++.+..++.++|++|+...+
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 45677789887642111 1 124678899999999999997653
No 139
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=65.82 E-value=16 Score=25.84 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=37.7
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++..........--+-..-..|+..++.||+++.-
T Consensus 73 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 73 QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3444443433355554 467788899999988765443222111112234577778899999864
No 140
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=65.64 E-value=18 Score=25.71 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=38.8
Q ss_pred ceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+.| .+.+++.++|-+++...-.....+--+-.--..|+..++.||+++.-+
T Consensus 70 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (297)
T 2rfg_A 70 VPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIP 135 (297)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 4554434344555554 677889999999987654432221111122346778889999998643
No 141
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=64.68 E-value=25 Score=25.56 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=39.7
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhc-CCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVT-NSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~-~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++....... ..+--+-.--..|+. .++.||+++.-+
T Consensus 92 rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 92 GIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp TCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 4555544444455554 4677888999999887654433 211111123446788 889999998654
No 142
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.63 E-value=32 Score=23.83 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
......+.+.+.+.+.|..+......++.. ...++.....++|-||+......... ..-.-+....+||+++
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~------~~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLS------NVVKEAKQEGIKVLAY 89 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCH------HHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH------HHHHHHHHCCCeEEEE
Confidence 346777888888888898887654444554 35566777789999999765333211 1223456778999998
Q ss_pred eCC
Q 031202 157 KGN 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 90 ~~~ 92 (313)
T 3m9w_A 90 DRM 92 (313)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 143
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=64.31 E-value=20 Score=21.40 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVliv~ 157 (164)
....+.+...+...|..+.. ....+. ++.++..+...+|+|++...- ....+ -.....+-. ...+||+++-
T Consensus 15 ~~~~~~l~~~L~~~~~~~~v-~~~~~~-~~a~~~l~~~~~dlii~D~~l-~~~~g---~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 15 PDDIALIRRVLDRKDIHCQL-EFVDNG-AKALYQVQQAKYDLIILDIGL-PIANG---FEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHHHHHHHTTCCEEE-EEESSH-HHHHHHHTTCCCSEEEECTTC-GGGCH---HHHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeeE-EEECCH-HHHHHHhhcCCCCEEEEeCCC-CCCCH---HHHHHHHHhcccccCCCEEEEe
Confidence 34556667777777776543 223443 445566677889999997542 11111 123344443 2458999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 89 ~~ 90 (144)
T 3kht_A 89 DN 90 (144)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 144
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=64.27 E-value=30 Score=23.25 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=29.0
Q ss_pred HHHhhhcCceEEEEEee--CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 88 DTLSRTKGAKVVAKVYW--GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+++.+.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 45677789887652111 11 24678899999999999997653
No 145
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=63.92 E-value=28 Score=25.34 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+..+.+|+++|-...-
T Consensus 143 ~~~~eRiar~AF~~A~~rrkkvt~v~KaNvl 173 (336)
T 1wpw_A 143 RFASERIAKVGLNFALRRRKKVTCVHKANVM 173 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEECCcch
Confidence 3557889999999999888889998876654
No 146
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=63.39 E-value=30 Score=24.57 Aligned_cols=64 Identities=17% Similarity=0.045 Sum_probs=39.6
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++..........--+-.--..|+..++.||+++.-
T Consensus 84 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 84 RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3555444433454444 456788999999999865443322111112346688889999999964
No 147
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=63.37 E-value=31 Score=23.14 Aligned_cols=43 Identities=2% Similarity=-0.066 Sum_probs=29.1
Q ss_pred HHHHhhhcCceEEEEEee--CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 87 LDTLSRTKGAKVVAKVYW--GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
..+++.+.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 345677789887642111 11 24588899999999999997653
No 148
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=63.36 E-value=6.6 Score=28.22 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|...+.+.|..+-.. +..|+......+....+ +|.||+.+... ...+.+++++.+||+=
T Consensus 54 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVIN 118 (307)
T 3tpf_A 54 FELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAM-VDFVMMRVNKH---------ETLLEFARYSKAPVIN 118 (307)
T ss_dssp HHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHH-SSEEEEECSCH---------HHHHHHHHHCSSCEEE
T ss_pred HHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHHhCCCCEEe
Confidence 344444556655432 12355555556666666 79999976532 2466788889999873
No 149
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=63.36 E-value=8.8 Score=29.25 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEe--eCChhhHHHHHHHhcCCCEEEEeec
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVY--WGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+.+..+.+.+++.|..+..... .|++.+.|.+.+++.+++.|+....
T Consensus 54 l~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 54 INAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 345667777777778888774322 6899999999999999999988544
No 150
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=63.13 E-value=11 Score=25.42 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=26.0
Q ss_pred CCcEEEEEecCChhhHH-HHHHHHHHhccCCCeEEEEE
Q 031202 3 KARTVGVGMDNSPNSKA-ALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~-al~~a~~la~~~~~~l~ll~ 39 (164)
.-++|++++.|+-.... +++..-.|.+ .|.+++++-
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~ 40 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVV 40 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 44799999999976665 6776655544 578877665
No 151
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=62.97 E-value=12 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=28.1
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+.+.+||+....+...+.+++..++-+...+.++.++.+.+.
T Consensus 1 M~~mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 1 MSCKPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp --CCCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCCCcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 5544577766644555677777777766666788888887654
No 152
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=62.76 E-value=17 Score=26.97 Aligned_cols=29 Identities=3% Similarity=-0.035 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..++..+++|+++|+..+.+|+++|-...
T Consensus 179 ~~~eRIar~AFe~A~~rrkkVT~v~KaNv 207 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRRKKVTSVDKANV 207 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECchh
Confidence 45788999999999988889998886544
No 153
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=62.40 E-value=8.8 Score=25.80 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=26.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-++|++++.|+..+.++.+..-.|.+..+.+++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 369999999999998888877777542576776654
No 154
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=62.05 E-value=12 Score=24.39 Aligned_cols=41 Identities=17% Similarity=0.019 Sum_probs=26.3
Q ss_pred CCCCcEEEEEe-cCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 1 MSKARTVGVGM-DNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 1 m~~~~~ILv~~-d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
|+| .+||+.. +.+.+++.+++..++-+...+.++.++.+.+
T Consensus 3 M~M-~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 3 MSS-PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp --C-CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred CCc-ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 444 3566555 4445567777877777776778888887754
No 155
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=61.92 E-value=19 Score=25.61 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=37.7
Q ss_pred CceEEEEEeeCChhhHH--HHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccEEEEeC
Q 031202 95 GAKVVAKVYWGDPREKL--CDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I--~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pVliv~~ 158 (164)
.+.+-.-+...+..+.| .+.+++.++|-+++.........+--+-.--..|+..++ .||+++.-
T Consensus 80 rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 80 KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 34444433333555544 677889999999887654432221111122345777788 99999864
No 156
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=61.82 E-value=22 Score=20.92 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
-+.+.+++.+.+.|++++..... .+..+ .. .++|+|+.+..-
T Consensus 19 ll~~kl~~~~~~~gi~~~i~~~~~~~~~~----~~--~~~D~Ii~t~~l 61 (109)
T 2l2q_A 19 MLVQRIEKYAKSKNINATIEAIAETRLSE----VV--DRFDVVLLAPQS 61 (109)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECSTTHHH----HT--TTCSEEEECSCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHh----hc--CCCCEEEECCcc
Confidence 44567777888888876644322 23322 22 457999998653
No 157
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=61.46 E-value=41 Score=23.89 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=50.9
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|.|.++++.....++-.+.+- ...+++|.+ |+..... .
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~--Visn~~~---------------------------------~--- 135 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVG--IVSNHPD---------------------------------F--- 135 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEE--EEESSST---------------------------------T---
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEE--EEeCcHH---------------------------------H---
Confidence 458888888887666666555442 334555544 4433310 1
Q ss_pred HHHHHHHhhhcCceEEEEEee-CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 84 LDILDTLSRTKGAKVVAKVYW-GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~-g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
...++++|+++...-.. .+ ..+++.+..++.++|++|+....
T Consensus 136 ----~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 136 ----APLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ----HHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----HHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 12366778887753111 12 24578999999999999997654
No 158
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=61.41 E-value=36 Score=23.26 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
......+.+.+.+.|..+......++.. ..+++.....++|-||+...... ...-..+....+||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 24 AEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE--------HDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--------CHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------hHHHHHhhccCCCEEEEec
Confidence 4667778888888898887654444443 44677778889999998654321 1122345667899998865
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 96 ~~ 97 (291)
T 3egc_A 96 EL 97 (291)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 159
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=61.24 E-value=31 Score=24.29 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=34.1
Q ss_pred ChhhH--HHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEEEeCC
Q 031202 106 DPREK--LCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 106 ~~~~~--I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+..+. +.+.+++.++|-+++-...... ..+--+-.--..|+..++.||+++.-+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYP 132 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 55554 4677888999999887654433 211111122346778889999998643
No 160
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=61.15 E-value=24 Score=21.05 Aligned_cols=74 Identities=9% Similarity=0.002 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
....+.+...+...|..+.. ..+..+++....+...+|+|++...-..+..+. .....+-....+||+++-...
T Consensus 15 ~~~~~~l~~~L~~~g~~v~~---~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 15 KFQAKTIANILNKYGYTVEI---ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCEEEE---ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 34555666666667765442 445555544443447899999986521111111 223334334568999886543
No 161
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=61.00 E-value=35 Score=23.98 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=34.0
Q ss_pred ChhhH--HHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEEEeCC
Q 031202 106 DPREK--LCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 106 ~~~~~--I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+..+. +.+.+++.++|-+++....... ..+--+-.--..|+..++.||+++.-+
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 131 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYP 131 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCh
Confidence 44444 4667888999999987654433 211111122345777889999998643
No 162
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=60.93 E-value=33 Score=24.23 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=33.9
Q ss_pred ChhhHH--HHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEEEeCC
Q 031202 106 DPREKL--CDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 106 ~~~~~I--~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+..+.| .+.+++.++|-+++....... ..+--+-..-..|+..++.||+++.-+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYP 132 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 455544 667888999999887654433 211111122346778889999998643
No 163
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=60.79 E-value=32 Score=24.26 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=38.9
Q ss_pred ceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+. +.+.+++.++|-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 71 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3tak_A 71 IPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVP 136 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 455443433355444 4567889999999988654433221111123456788889999999643
No 164
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=60.55 E-value=17 Score=24.52 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
...+..++++|+..|++..++|........ .. ..+...+...+.+..+.+.+++.|+.
T Consensus 75 ~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~----------------~~------~~~~~~~~~~~~l~~l~~~a~~~gv~ 132 (254)
T 3ayv_A 75 LRRLLFGLDRAAELGADRAVFHSGIPHGRT----------------PE------EALERALPLAEALGLVVRRARTLGVR 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCTTCC----------------HH------HHHHTHHHHHHHTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCcccc----------------cc------cHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 356778899999999998888754322110 00 00111112344455666666677888
Q ss_pred EEEEEeeCChhhHHHHHHHhcC
Q 031202 98 VVAKVYWGDPREKLCDAVEDLK 119 (164)
Q Consensus 98 ~~~~v~~g~~~~~I~~~a~~~~ 119 (164)
+..+-..+...+.+.+.++..+
T Consensus 133 l~lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 133 LLLENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp EEEECSSCSSGGGTHHHHHHHT
T ss_pred EEEcCCCCCCHHHHHHHHHhcC
Confidence 8776544434455555555543
No 165
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=60.43 E-value=11 Score=23.35 Aligned_cols=40 Identities=8% Similarity=-0.059 Sum_probs=26.8
Q ss_pred CCcEEEEEecCChh----hHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 3 KARTVGVGMDNSPN----SKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 3 ~~~~ILv~~d~s~~----s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.|+++++.+..+++ +..++++|..++.. +..+.++...+.
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~~DG 47 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-DQDVCVLFLDDG 47 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-CCEEEEEECGGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEEhHH
Confidence 45789999987765 46677777766554 567776666544
No 166
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=60.28 E-value=42 Score=23.71 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=27.5
Q ss_pred HhhhcCceEEEEEee-CC---hhhHHHHHHHhcCCCEEEEeecC
Q 031202 90 LSRTKGAKVVAKVYW-GD---PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~-g~---~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.++++|+++...-.. .+ ..+++.+..++.++|++|+....
T Consensus 133 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 133 LAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 366778887753111 11 24578999999999999997653
No 167
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=60.21 E-value=30 Score=26.56 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
..+.+..+.+.++..|..+. ++. |++.+.|.+.+++.+++.|+.... ..... .-.-......+....+++..+..
T Consensus 63 l~~sL~~L~~~L~~~G~~L~--v~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~-~~rd~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 63 LKNSLAQLDSSLRSLGTCLI--TKRSTDSVASLLDVVKSTGASQIFFNHL-YDPLS-LVRDHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHHHHHHHHHHHHTTCCEE--EEECSCHHHHHHHHHHHHTCCEEEEECC-CSHHH-HHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCeEE--EEeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHH-HHHHHHHHHHHHHcCcEEEEECC
Confidence 35667777777888888876 444 699999999999999999988643 22221 11122345566777888887765
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 139 ~ 139 (509)
T 1u3d_A 139 D 139 (509)
T ss_dssp S
T ss_pred C
Confidence 4
No 168
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=60.01 E-value=13 Score=24.84 Aligned_cols=45 Identities=9% Similarity=-0.029 Sum_probs=26.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEee
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~ 127 (164)
.+..+.+.+.++..|.++...-....-.+.+.+..++. |.|+++.
T Consensus 43 ~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~a--d~I~l~G 87 (206)
T 3l4e_A 43 TFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKN--DFIYVTG 87 (206)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHS--SEEEECC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhC--CEEEECC
Confidence 34566677777777887664211112234444555554 8899876
No 169
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=59.68 E-value=55 Score=25.51 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=27.8
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
-++++++++|.-+|..++..+.+ ..+.+++.+++....
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~---~~G~~v~~v~vd~g~ 292 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHK---IFKERFFGIFIDNGL 292 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHH---HHGGGEEEEEEECSC
T ss_pred CceEEEEcccCCCHHHHHHHHHH---HhCCeEEEEEEecCC
Confidence 46899999999988766555433 346789999987543
No 170
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=59.64 E-value=38 Score=22.95 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=47.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
......+.+.+.+.|..+......++.. ..+++.....++|-||+..... . ..-..+...++||+++-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~------~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P------QTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H------HHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H------HHHHHHHHCCCCEEEEec
Confidence 4677778888888898887654444443 4567777888999999975432 1 122345667899998865
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 171
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=59.59 E-value=39 Score=23.02 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=45.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.....++|-||+......... . .-..+...++||+++-.
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~-~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 21 LKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN-----P-WLQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHH-----H-HHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----H-HHHHHHHCCCcEEEecC
Confidence 4667777888888898887654444543 45566677788999998754311111 1 22335556899988864
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 95 ~ 95 (291)
T 3l49_A 95 A 95 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 172
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=59.10 E-value=13 Score=26.91 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=27.9
Q ss_pred eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 103 YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 103 ~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
..|+......+....+ +|.||+.+... ...+.+++++.+||+
T Consensus 88 ~kgEsl~DTarvLs~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 129 (323)
T 3gd5_A 88 GRGEPVRDTARVLGRY-VDGLAIRTFAQ---------TELEEYAHYAGIPVI 129 (323)
T ss_dssp ---CCHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHHCSCEE
T ss_pred CCCCCHHHHHHHHHHh-CCEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 3466666666666677 89999976542 245667788899986
No 173
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=59.06 E-value=26 Score=25.21 Aligned_cols=33 Identities=9% Similarity=-0.103 Sum_probs=22.9
Q ss_pred EEEEecC-----ChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 7 VGVGMDN-----SPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 7 ILv~~d~-----s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+||..+- ++.+..++..|.+|+. +++++.+-+.
T Consensus 4 ~lv~~e~~~g~l~~~~~eal~aA~~La~----~V~av~~G~~ 41 (315)
T 1efv_A 4 TLVIAEHANDSLAPITLNTITAATRLGG----EVSCLVAGTK 41 (315)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHTTTS----EEEEEEEESC
T ss_pred EEEEEEccCCCcCHHHHHHHHHHHHhcC----cEEEEEECCc
Confidence 7776653 3567788888877753 8888877744
No 174
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=58.73 E-value=56 Score=24.63 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=26.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhh---HHHHHHHhcCCCEEEEeecCCcc
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPRE---KLCDAVEDLKLDTLVVGSRGLGA 132 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~---~I~~~a~~~~~dliv~g~~~~~~ 132 (164)
.+.+.......++.+.......++.. ..+..+...++|++++-+.++..
T Consensus 141 ~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 141 YDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 44455555555665543222224432 23444555578888888776654
No 175
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=58.49 E-value=12 Score=27.19 Aligned_cols=47 Identities=15% Similarity=-0.029 Sum_probs=28.0
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCCc-cccceeeccchhHHhcCCCccEE
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGLG-ALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~~-~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
......+....+ +|.||+.+.+.. .+..-......+.+.+++.+||+
T Consensus 92 sl~DTarvLs~y-~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVI 139 (324)
T 1js1_X 92 HLLEAIPVMGCY-CDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVF 139 (324)
T ss_dssp EHHHHHHHHHHT-CSEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEE
T ss_pred CHHHHHHHHHHh-CcEEEEecccccccccccccchHHHHHHhhCCCCEE
Confidence 444555555566 799999765211 11100123457778889999986
No 176
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=58.06 E-value=21 Score=26.27 Aligned_cols=29 Identities=14% Similarity=-0.019 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..++..+++|+++|+..+.+|+++|-...
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~KaNv 195 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDKANV 195 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECchh
Confidence 45788899999999888889998886543
No 177
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=57.96 E-value=34 Score=25.21 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHhccCCC-eEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSGD-LIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~-~l~ll~v~~~~ 44 (164)
...++..+++|+++|+..+. +|+++|-...-
T Consensus 165 ~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvl 196 (364)
T 3flk_A 165 RRGVDRILKYAFDLAEKRERKHVTSATKSNGM 196 (364)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEEECTTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEECcchh
Confidence 35678899999999988765 69998865443
No 178
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=57.87 E-value=28 Score=26.44 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=33.5
Q ss_pred CceEEEEEeeCChhhHHHHH--HHhcCCCEEEEe-ecCCccccceeeccch
Q 031202 95 GAKVVAKVYWGDPREKLCDA--VEDLKLDTLVVG-SRGLGALKRVLLGSVS 142 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I~~~--a~~~~~dliv~g-~~~~~~~~~~~~gs~~ 142 (164)
..-+...|..|+..+.|.+. |..+++|.|-+- +.+.+-+.....|.++
T Consensus 150 ~p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT~ 200 (516)
T 1xrs_A 150 GPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATT 200 (516)
T ss_dssp SCEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCS
T ss_pred CCEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCCC
Confidence 34455668889999999876 888999988665 4455555555556444
No 179
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=57.79 E-value=43 Score=23.00 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=45.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee--CChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW--GDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
....+-+.+.+.+.|.++...... +++.. ..++.....++|-||+......... ..-.-+....+||+.+
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~------~~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 19 TSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFS------KSLQRANKLNIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTH------HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH------HHHHHHHHCCCCEEEE
Confidence 456677777888889888764333 34443 4566666788999998654332211 1122355568999988
Q ss_pred eCC
Q 031202 157 KGN 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 93 ~~~ 95 (297)
T 3rot_A 93 DTR 95 (297)
T ss_dssp SCC
T ss_pred cCC
Confidence 644
No 180
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=57.72 E-value=48 Score=23.49 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=41.9
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++..........--+-.--..|+..++.||+++.-+.+
T Consensus 73 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~ 141 (300)
T 3eb2_A 73 RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQF 141 (300)
T ss_dssp SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTT
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccc
Confidence 3555544544455444 456788999999999876543322111112346688888999999975543
No 181
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=57.10 E-value=52 Score=24.10 Aligned_cols=38 Identities=8% Similarity=-0.013 Sum_probs=20.0
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
.|++|++.+...+..-........+.+..+.++.+++-
T Consensus 24 ~m~ki~~v~Gtr~~~~~~a~li~~l~~~~~~~~~~~~t 61 (396)
T 3dzc_A 24 AMKKVLIVFGTRPEAIKMAPLVQQLCQDNRFVAKVCVT 61 (396)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CCCeEEEEEeccHhHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 45788887765555444444444443433445544443
No 182
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=57.09 E-value=20 Score=25.51 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=38.3
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhH-HhcCCCccEEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNH-VVTNSSCPVTV 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~-v~~~~~~pVli 155 (164)
|...+.+.|..+-.. +..|+......+....+.+|.||+.+...+ ..+. +.+++.+||+=
T Consensus 52 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~~D~iviR~~~~~---------~~~~~la~~~~vPVIN 118 (291)
T 3d6n_B 52 FEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFVF---------FPYKEIVKSLNLRLVN 118 (291)
T ss_dssp HHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHHTTCSEEEEEESSCC---------CSCHHHHHTCSSEEEE
T ss_pred HHHHHHHhCCeEEEECCccCcccCCCcHHHHHHHHHHhcCCEEEEEcCChH---------HHHHHHHHhCCCCEEe
Confidence 344444556554432 123556677777777787899999876433 3455 77889999863
No 183
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=57.07 E-value=32 Score=24.63 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=38.8
Q ss_pred ceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+. +.+.+++.++|-+++...-.....+--+-.--..|+..++.||+++.-+
T Consensus 93 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 158 (314)
T 3qze_A 93 IPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVP 158 (314)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECH
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455443333344444 4567889999999998654433221111123456778889999999643
No 184
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=57.01 E-value=25 Score=20.13 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEE
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv 156 (164)
...+.+...+...|.++. ...+. ++.++..+...+|++++...-.+...+. ...+.+-.. ..+||+++
T Consensus 16 ~~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 16 ALSATLRSALEGRGFTVD---ETTDG-KGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHHHTCEEE---EECCH-HHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHHHhcCceEE---EecCH-HHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 445556666666676554 23343 4444556667899999986522011111 234444443 46899988
No 185
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=56.98 E-value=26 Score=26.25 Aligned_cols=29 Identities=7% Similarity=-0.072 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..++..+++|+++|+..+.+|+++|-...
T Consensus 207 ~~~eRIar~AFe~A~~rrkkVT~v~KaNV 235 (405)
T 3r8w_A 207 HEIDRIARVAFETARKRRGKLCSVDKANV 235 (405)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECchh
Confidence 55788899999999988889998886543
No 186
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=56.77 E-value=44 Score=22.85 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC--Chh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG--DPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g--~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
..+.+.+.+.+.+.|.++......+ ++. ...++.....++|-||+......... .... -+. ..+||+++
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~-~~~-~~iPvV~~ 93 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE-----HNLK-SWV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST-----TTHH-HHT-TTSCEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-----HHHH-HHc-CCCCEEEe
Confidence 4667777788888898887654444 533 34566677788999999755433222 2233 344 78999998
Q ss_pred e
Q 031202 157 K 157 (164)
Q Consensus 157 ~ 157 (164)
-
T Consensus 94 ~ 94 (304)
T 3o1i_D 94 V 94 (304)
T ss_dssp S
T ss_pred c
Confidence 3
No 187
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=56.34 E-value=58 Score=24.06 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=39.9
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC--Cc-cccceeeccchhHHhcCCCccEEEEeC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG--LG-ALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~--~~-~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.|+++... ..+ ++-...++.++|.+++|... .+ ..-.........-++++..+|++++=+
T Consensus 226 A~eL~~~GIpvtlI--~Ds---a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 226 AWELMQGGIDVTLI--TDS---MAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHHTTTCEEEEE--CGG---GHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEE--ehh---HHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 34455668888753 333 34455566778999999864 22 222222223444567777899999844
No 188
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=55.86 E-value=63 Score=24.29 Aligned_cols=28 Identities=0% Similarity=-0.084 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+-.+...|..+++..|-++.++......
T Consensus 114 TT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 114 TTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4566777777776557788777665443
No 189
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=55.79 E-value=36 Score=25.32 Aligned_cols=29 Identities=7% Similarity=0.005 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..++..+++|+++|+..+.+|+++|-...
T Consensus 186 ~~~eRIar~AFe~A~~rrkkVT~v~KaNV 214 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRKKKVTSVDKANV 214 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT
T ss_pred HHHhHHHHHHHHHHHHcCCceEEEECCcc
Confidence 45788899999999988889998886543
No 190
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=55.72 E-value=27 Score=20.10 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=40.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+...+...|..+.. ..+. ++.++..++..+|++++...- +...+. .....+-...++|++++-.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~---~~~~-~~al~~~~~~~~dlii~D~~~-p~~~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 13 PIADILEFNLRKEGYEVHC---AHDG-NEAVEMVEELQPDLILLDIML-PNKDGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESSH-HHHHHHHHTTCCSEEEEETTS-TTTHHH---HHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHhCCEEEEE---eCCH-HHHHHHHhhCCCCEEEEeCCC-CCCCHH---HHHHHHHhcCCCCEEEEEC
Confidence 4445556666666766542 3444 445566778889999997542 221111 2344444455789988754
No 191
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=55.69 E-value=57 Score=23.80 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=39.8
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC--Cc-cccceeeccchhHHhcCCCccEEEEeC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG--LG-ALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~--~~-~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.|+++... .. ..+-...++.++|.+++|... .+ ..-.........-++++..+|++++=+
T Consensus 201 a~eL~~~GI~vtlI--~D---sa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 201 AWELMKDGIEVYVI--TD---NMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHHTTTCEEEEE--CG---GGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHhCCCCEEEE--eh---hHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 33455668888753 23 344455666778999999864 22 222222223344566777899999843
No 192
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=55.68 E-value=49 Score=23.00 Aligned_cols=51 Identities=6% Similarity=-0.018 Sum_probs=33.5
Q ss_pred hhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.|.+.+++.++|+|+..............+..+...++..+.|++.+.
T Consensus 133 ~~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~e 183 (270)
T 3dfi_A 133 IREDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLWQ 183 (270)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCChhHHHHHHHHHHHHHHcCCCeeEec
Confidence 345677788999999988864433334444555566666677777776653
No 193
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=55.52 E-value=50 Score=24.00 Aligned_cols=31 Identities=13% Similarity=-0.092 Sum_probs=24.5
Q ss_pred ChhhHHHHHHHHHHhccC-CCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDS-GDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~-~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+.. +.+|+++|-...-
T Consensus 143 ~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvl 174 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRPRKTLHIAHKANVL 174 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 355788999999999987 5689998866554
No 194
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=55.17 E-value=47 Score=22.69 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=52.7
Q ss_pred CCCCcEEEEEe-cCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCC
Q 031202 1 MSKARTVGVGM-DNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTS 79 (164)
Q Consensus 1 m~~~~~ILv~~-d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
|+.. ++|+.. -.++..-.+--..+.++ ..|.+++++.+........ + .
T Consensus 1 ~~~~-~vL~v~aHPDDe~l~~Ggtia~~~-~~G~~V~vv~lT~G~~g~~--------~---------------------~ 49 (242)
T 2ixd_A 1 MSGL-HILAFGAHADDVEIGMAGTIAKYT-KQGYEVGICDLTEADLSSN--------G---------------------T 49 (242)
T ss_dssp -CCC-SEEEEESSTTHHHHHHHHHHHHHH-HTTCCEEEEEEECCTTCSS--------S---------------------C
T ss_pred CCCc-cEEEEEeCCChHHHhHHHHHHHHH-HCCCeEEEEEEcCCCCCCC--------C---------------------C
Confidence 5544 454444 44443332222223333 3688999999976543210 0 0
Q ss_pred ChhHHHHHHHHhhhcCceE-EEE-EeeC------ChhhHHHHHHHhcCCCEEEEeecC
Q 031202 80 NPEVLDILDTLSRTKGAKV-VAK-VYWG------DPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~-v~~g------~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.....+++.+.+...|++. ... ...+ +..+.|.+.+++.++|+|+.....
T Consensus 50 ~~~R~~E~~~A~~~LGv~~~~~L~~~D~~~~~~~~~~~~l~~~ir~~~PdvV~t~~~~ 107 (242)
T 2ixd_A 50 IELRKEEAKVAARIMGVKTRLNLAMPDRGLYMKEEYIREIVKVIRTYKPKLVFAPYYE 107 (242)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEECTTCCCCCHHHHHHHHHHHHHHCCSEEEEECSC
T ss_pred HHHHHHHHHHHHHHcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 1233455556666667762 221 1111 356788889999999999876443
No 195
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=55.08 E-value=55 Score=23.38 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHHHhhhcCceEEEEE------eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 87 LDTLSRTKGAKVVAKV------YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v------~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|+..+.+.|-.+-..- ..|+......+....+ +|.||+.+... ...+.+.+++.+||+=
T Consensus 63 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~la~~~~vPVIN 127 (301)
T 2ef0_A 63 LEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERF-VEGIAARVFRH---------ETVEALARHAKVPVVN 127 (301)
T ss_dssp HHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEEE
T ss_pred HHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHHHCCCCEEe
Confidence 3444445565544331 2245555666666666 79999976532 2466688888999873
No 196
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=55.07 E-value=52 Score=23.12 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
......+.+.+.+.|..+......++.. ...++.....++|-||+....... ......+...++||+++-.
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-------HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-------HHHHHHHHcCCCCEEEEcC
Confidence 4667778888888898877544344443 335677777899999986432211 1234566677899888854
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 152 ~ 152 (338)
T 3dbi_A 152 R 152 (338)
T ss_dssp C
T ss_pred C
Confidence 3
No 197
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=54.95 E-value=27 Score=25.71 Aligned_cols=31 Identities=10% Similarity=-0.096 Sum_probs=24.9
Q ss_pred ChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+..+.+|+++|-...-
T Consensus 169 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNvl 199 (363)
T 1cnz_A 169 RFEIERIARIAFESARKRRRKVTSIDKANVL 199 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCccc
Confidence 3557889999999999888889988876554
No 198
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=54.81 E-value=47 Score=22.58 Aligned_cols=73 Identities=8% Similarity=0.085 Sum_probs=46.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.....++|-||+......... . .-.-+...++||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~-~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 24 QRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG-----S-AIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-----H-HHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----H-HHHHHHHcCCCEEEecC
Confidence 4667778888888898887654444544 34566677788999998654322111 1 12344556899999854
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 98 ~ 98 (293)
T 3l6u_A 98 M 98 (293)
T ss_dssp C
T ss_pred C
Confidence 3
No 199
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=54.55 E-value=62 Score=23.88 Aligned_cols=93 Identities=10% Similarity=0.070 Sum_probs=55.5
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCC--------------eEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhh
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGD--------------LIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINF 71 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~--------------~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (164)
+|-|++..-..|+...+-+.++.+..+. -=.++|+..+..+..
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~s----------------------- 70 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTS----------------------- 70 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGG-----------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchH-----------------------
Confidence 6777777666676777777777665443 124777765554331
Q ss_pred hhhhcCCCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 72 SKQYGLTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
......+.+...+...+.++-.......-....++..++.++|.|+++..
T Consensus 71 -------e~~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 71 -------NIDSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp -------GHHHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred -------HHHHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 01123566666666666655432222222366788899889998887754
No 200
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=54.50 E-value=18 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=26.7
Q ss_pred CcEEEEEecCChhhH-HHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSK-AALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~-~al~~a~~la~~~~~~l~ll~ 39 (164)
-++|++++.|+.... ++++..-.|.+ .|.+++++-
T Consensus 7 ~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~ 42 (201)
T 3lqk_A 7 GKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFV 42 (201)
T ss_dssp TCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEE
Confidence 479999999998877 78887666644 577776654
No 201
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=54.43 E-value=48 Score=22.51 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhhhcCce-EEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAK-VVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|.. +......++.. ..+++.....++|-||+.. .. .. -+....+||+++-
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~---------~~-~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FT---------IP-PNFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CC---------CC-TTCCCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hH---------HH-HHHhCCCCEEEEc
Confidence 46777788888888988 66533334443 4457778888999999876 11 11 2456688998886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 93 ~~ 94 (277)
T 3hs3_A 93 SA 94 (277)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 202
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=54.31 E-value=40 Score=21.62 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHH----HhcCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAV----EDLKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a----~~~~~dliv~g 126 (164)
+.--..+.+.+.+.|.++......+|-.+.|.+.. ...++|+||..
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 34455677888888999887766665455554443 34568999884
No 203
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=53.82 E-value=51 Score=22.62 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
....+.+.+.+.+.|..+......+ +....+++.....++|-||+....... ..-..+...++||+++-..
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECCC
Confidence 4677778888888888877643332 345678888888899999996543221 1223456678999988654
No 204
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=53.82 E-value=32 Score=25.30 Aligned_cols=31 Identities=3% Similarity=-0.143 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+..+.+|+++|-...-
T Consensus 164 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNvl 194 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQGRRKQLCSVDKANVL 194 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCccc
Confidence 3557889999999999888889988876553
No 205
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=53.24 E-value=22 Score=23.95 Aligned_cols=34 Identities=6% Similarity=-0.232 Sum_probs=26.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
-++|++++.|+..+.++.+..-.|.+ .+ +++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~ 52 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVV 52 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEE
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEE
Confidence 36999999999988888887777655 45 666554
No 206
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=53.06 E-value=31 Score=25.40 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..++..+++|+++|+..+.+|+++|-...-
T Consensus 163 ~~~eRIar~AFe~A~~rrkkVt~v~KaNvl 192 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRRKHVVSVDKANVL 192 (359)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCccc
Confidence 457889999999999888889988876553
No 207
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=53.02 E-value=51 Score=22.47 Aligned_cols=72 Identities=10% Similarity=0.042 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeC--ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWG--DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......+ +....+.+.....++|-||+...... ...-..+...++||+++-
T Consensus 25 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 25 TSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN--------DPRVRFMTERNMPFVTHG 96 (288)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT--------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC--------cHHHHHHhhCCCCEEEEC
Confidence 35677778888888888776543332 23456777777889999998643211 112234556789999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 97 ~~ 98 (288)
T 3gv0_A 97 RS 98 (288)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 208
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=52.99 E-value=43 Score=25.83 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=31.3
Q ss_pred hhHHHHHH-HhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 108 REKLCDAV-EDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 108 ~~~I~~~a-~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
...+.+.+ +..++|.||+-.+..+. .+..-.+++..++||+++..+
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~TFs~------a~~~i~~l~~l~~PvL~~~~q 106 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHTFSP------AKMWINGLTMLNKPLLQFHTQ 106 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCSCCC------THHHHHHHHHCCSCEEEEECC
T ss_pred HHHHHHHhccccCCcEEEEeCCcCcc------HHHHHHHHHhcCCCEEEEeCC
Confidence 44555555 56689999997665443 234455778899999998643
No 209
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=52.94 E-value=26 Score=27.55 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVK 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~ 157 (164)
...+...++..|.++.. ....-+.+.|++.+++.++|+|.+......... .+..+.+.+-+. .++||++--
T Consensus 115 ~~iva~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVGG 186 (579)
T 3bul_A 115 KNIVGVVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIGG 186 (579)
T ss_dssp HHHHHHHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEEc
Confidence 34555677778888764 334478999999999999999999765332221 122334434332 258887753
No 210
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=52.79 E-value=17 Score=17.66 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.4
Q ss_pred eEEEEEeeC-ChhhHHHHHHHhcCCCE
Q 031202 97 KVVAKVYWG-DPREKLCDAVEDLKLDT 122 (164)
Q Consensus 97 ~~~~~v~~g-~~~~~I~~~a~~~~~dl 122 (164)
++..+.... +..++|++++.+.++|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 455555554 88899999999987764
No 211
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=52.79 E-value=31 Score=25.44 Aligned_cols=31 Identities=6% Similarity=-0.095 Sum_probs=25.0
Q ss_pred ChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+..+.+|+++|-...-
T Consensus 173 r~~~eRIar~AFe~A~~rrkkVt~v~KaNvl 203 (366)
T 1vlc_A 173 RKTVERIARTAFEIAKNRRKKVTSVDKANVL 203 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCccc
Confidence 3557889999999999888888888876554
No 212
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=52.78 E-value=36 Score=20.57 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~~~ 159 (164)
....+.+...+...|..+. ...+. ++.++..++..+|+|++...-. ...++ .....+-.. ..+||+++-..
T Consensus 24 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 24 EVILQRLQQLLSPLPYTLH---FARDA-TQALQLLASREVDLVISAAHLP-QMDGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHHHHTTSSCEEE---EESSH-HHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHHHhcccCcEEE---EECCH-HHHHHHHHcCCCCEEEEeCCCC-cCcHH---HHHHHHHhHCCCCeEEEEECC
Confidence 3455666677777775543 23444 4444566778899999986522 11111 123333333 35888887653
No 213
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=52.69 E-value=27 Score=24.70 Aligned_cols=63 Identities=8% Similarity=-0.006 Sum_probs=38.1
Q ss_pred ceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCcc-ccceeeccchhHHhcCC---CccEEEEeC
Q 031202 96 AKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGA-LKRVLLGSVSNHVVTNS---SCPVTVVKG 158 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~---~~pVliv~~ 158 (164)
+.+-.-+...+..+. +.+.+++.++|-+++....... ..+--+-.--..|+..+ +.||+++.-
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~ 141 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNI 141 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 445444444455554 4677889999999987654433 21111112234677788 899999864
No 214
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=52.21 E-value=56 Score=22.69 Aligned_cols=73 Identities=11% Similarity=-0.060 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+-+.+.+.+.|.++......+++.. ..++.....++|-||+......... ..-.-+....+||+++-.
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~------~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 19 IDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS------DVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH------HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH------HHHHHHHHCCCCEEEECC
Confidence 46777788888888988876554455543 4455566678999999754322111 122345567899999865
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 93 ~ 93 (330)
T 3uug_A 93 L 93 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 215
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=52.20 E-value=67 Score=23.53 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|+..+.+.|..+-.. +..|+......+....+ +|.||+.+...+ ..+.+++++.+||+=
T Consensus 84 FE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~-~D~IviR~~~~~---------~~~~lA~~s~vPVIN 148 (353)
T 3sds_A 84 TEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSM-VSCIVARVGPHS---------DIANLAKHSSVPVIN 148 (353)
T ss_dssp HHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTS-CSEEEEECSSHH---------HHHHHHHHCSSCEEE
T ss_pred HHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHh-cCEEEEEeCChH---------HHHHHHhhCCCCEEE
Confidence 334444456554322 23355556666666666 799999654322 356788889999873
No 216
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=51.72 E-value=30 Score=25.15 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=24.5
Q ss_pred ChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+..+.+|+++|-...-
T Consensus 153 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNvl 183 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRRRKHLTLVHKTNVL 183 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEECTTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCccc
Confidence 3557889999999999888889988865443
No 217
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=51.57 E-value=56 Score=22.45 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=28.0
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..++++|+++|.-+|..++..+.+. .+.+++.+++...
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~~~ 62 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMPTQ 62 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECCSC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEecCC
Confidence 4679999999999987766665543 3577888887643
No 218
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=51.50 E-value=67 Score=23.32 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+++.+.+.+.+...|++++..-........+.....+ +|.||+|+.-..
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~--~d~iiigsP~y~ 319 (404)
T 2ohh_A 271 RKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILE--SGAIALGAPTIY 319 (404)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCEET
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECcccc
Confidence 4566666666666777776543333334455554554 499999976443
No 219
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=51.35 E-value=61 Score=22.86 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=38.9
Q ss_pred ceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+ ++.+.+++.++|-+++.........+--+-.--+.|+..++.||+++.-+
T Consensus 77 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 142 (297)
T 3flu_A 77 VPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVP 142 (297)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 55544343334444 34567889999999988654433221111123456788889999999643
No 220
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=51.29 E-value=64 Score=23.01 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=37.5
Q ss_pred ceEEEEEeeCChhhHH--HHHHHhcCC-CEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPREKL--CDAVEDLKL-DTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~~I--~~~a~~~~~-dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+.| .+.+++.++ |-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 77 vpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (311)
T 3h5d_A 77 VPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIP 143 (311)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECH
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 4554434333555444 566888776 988887654333221111123567888899999999643
No 221
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=51.27 E-value=53 Score=22.12 Aligned_cols=69 Identities=7% Similarity=0.045 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhH-HhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNH-VVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~-v~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|..+......++.. ..+++.....++|-||+.... ...-. .+....+||+++-
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~----------~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 24 TLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN----------ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG----------HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC----------hHHHHHHHHcCCCCEEEEe
Confidence 4677778888888898887644444443 456777778899999996511 11123 4556689998885
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 44
No 222
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=50.65 E-value=45 Score=21.97 Aligned_cols=48 Identities=13% Similarity=-0.021 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
..+.+.+.+.+++.|.+++..-.. ++-.+.+.+...+. |.||++..-.
T Consensus 33 ~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~A--D~iV~~~P~y 81 (204)
T 2amj_A 33 DTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWA--DVVIWQMPGW 81 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHC--SEEEEEEECB
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhC--CEEEEECCcc
Confidence 456666777777778888776443 34456677777776 9999997643
No 223
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=50.55 E-value=74 Score=23.58 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=39.7
Q ss_pred HHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC--Cc-cccceeeccchhHHhcCCCccEEEEeC
Q 031202 88 DTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG--LG-ALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~--~~-~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.|+++... ..+ .+-...++.++|.+++|... .+ ..-.........-++++-.+|++++=+
T Consensus 230 A~eL~~~GIpvtlI--~Ds---a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 230 VYECVQEDIPCTLI--CDG---AASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHHHTTCCEEEE--CGG---GHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEE--ehh---HHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCC
Confidence 33445668888753 333 34455566778999999864 22 222222223344566777899999854
No 224
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=50.54 E-value=61 Score=23.00 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=37.4
Q ss_pred ceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCcc--ccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGA--LKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~--~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+ ++.+.+++.++|-+++-...... ..+--+-.--..|+..++.||+++.-+
T Consensus 84 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P 151 (307)
T 3s5o_A 84 RLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVP 151 (307)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 44443333335444 44577889999999997654321 111101123456778889999999743
No 225
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=50.26 E-value=47 Score=21.21 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh----cCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED----LKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~----~~~dliv~g 126 (164)
+.-...+...+.+.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 30 Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 30 DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred cChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3445566777777898877665555444444444333 368999884
No 226
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=50.04 E-value=71 Score=23.17 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+++.+.+.+.+...|+.++..-........+.....+. |.||+|+....
T Consensus 267 ~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--d~ii~gsp~~~ 315 (402)
T 1e5d_A 267 EKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDA--GAVIVGSPTHN 315 (402)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTC--SEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHC--CEEEEECCccC
Confidence 44455566666666777665433333345555555554 99999976444
No 227
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=50.01 E-value=14 Score=26.56 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=35.2
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|...+.+.|..+-.. +..|+......+....+ +|.||+.+... ...+.+.+++.+||+
T Consensus 57 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 120 (307)
T 2i6u_A 57 FELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRY-VDAIVWRTFGQ---------ERLDAMASVATVPVI 120 (307)
T ss_dssp HHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHH-EEEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred HHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHh-CCEEEEecCCh---------hHHHHHHhhCCCCEE
Confidence 333444456554432 12355555666666666 69999976532 246667888899986
No 228
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=49.77 E-value=34 Score=24.47 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=39.0
Q ss_pred ceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 96 AKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 96 ~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+.+-.-+...+..+ ++.+.+++.++|-+++...-.....+--+-.--..|+..++.||+++.-+
T Consensus 94 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 159 (315)
T 3na8_A 94 VPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNP 159 (315)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 45544343334444 44567889999999998664433221111123456778889999999743
No 229
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=49.58 E-value=75 Score=23.35 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCc--cccceeeccchhHHhcCCCccEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLG--ALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~--~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|+......+....+ +|.||+.+.... .+... .....+.+++++.+||+
T Consensus 112 gEsl~DTarvLs~y-~D~IviR~~~~~~~~~~~~-~~~~~~~lA~~~~vPVI 161 (359)
T 1zq6_A 112 EEHIAEVARVLGRY-VDLIGVRAFPKFVDWSKDR-EDQVLKSFAKYSPVPVI 161 (359)
T ss_dssp CEEHHHHHHHHHHH-CSEEEEECCCCSSCHHHHT-TCHHHHHHHHHCSSCEE
T ss_pred CCcHHHHHHHHHHh-CcEEEEecccccccccccc-chHHHHHHHHhCCCCEE
Confidence 45555666666667 899999766221 11110 12356778899999986
No 230
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=49.54 E-value=27 Score=25.07 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|+......+....+ +|.||+.+... ...+.+.+++.+||+=
T Consensus 87 gEsl~DTarvls~~-~D~iviR~~~~---------~~~~~la~~~~vPVIN 127 (308)
T 1ml4_A 87 GESLRDTIKTVEQY-CDVIVIRHPKE---------GAARLAAEVAEVPVIN 127 (308)
T ss_dssp TCCHHHHHHHHTTT-CSEEEEEESST---------THHHHHHHTCSSCEEE
T ss_pred CCCHHHHHHHHHHh-CcEEEEecCCh---------hHHHHHHHhCCCCEEe
Confidence 44555555555566 79999986643 2466788899999873
No 231
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=49.46 E-value=48 Score=21.06 Aligned_cols=46 Identities=11% Similarity=-0.030 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh----cCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED----LKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~----~~~dliv~g 126 (164)
+.-...+...+++.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 20 D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 20 DTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp CCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred cchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3444567777788898877654444433444433332 268998884
No 232
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=49.33 E-value=23 Score=21.39 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+...++..|.++.. ...+..++ ++.+++..+|++++--. -....+ -..-+.+++.++||+++-.
T Consensus 21 ~~~l~~~L~~~G~~v~~--~a~~g~eA-l~~~~~~~~DlvllDi~-mP~~~G----~el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 21 AMLIEDTLCELGHEVAA--TASRMQEA-LDIARKGQFDIAIIDVN-LDGEPS----YPVADILAERNVPFIFATG 87 (123)
T ss_dssp SHHHHHHHHHHCCCCCB--CSCCHHHH-HHHHHHCCSSEEEECSS-SSSCCS----HHHHHHHHHTCCSSCCBCT
T ss_pred HHHHHHHHHHCCCEEEE--EECCHHHH-HHHHHhCCCCEEEEecC-CCCCCH----HHHHHHHHcCCCCEEEEec
Confidence 34445555566765421 13343444 45667788999999643 222222 1222344556789888753
No 233
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=49.28 E-value=14 Score=21.97 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-ChhhHHHH-HHHhcCCCEEEEeecC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-DPREKLCD-AVEDLKLDTLVVGSRG 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~-~a~~~~~dliv~g~~~ 129 (164)
+.+.|++.+.+.|+++..+.... .+...|.. .+.+ +|++|+....
T Consensus 21 AaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d~ 67 (106)
T 2r48_A 21 AAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIRE--ADAIIIAADR 67 (106)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHH--CSEEEEEESS
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHh--CCEEEEEeCC
Confidence 34566667777788888765543 22233333 3344 4899998653
No 234
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=49.25 E-value=20 Score=24.79 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..++++...+.|.++...|-.| +..+-+..+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~~~I~VDGG-I~~~ti~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRDILLEIDGG-VNPYNIAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSCCEEEEESS-CCTTTHHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCCeeEEEECC-cCHHHHHHHHHcCCCEEEEehH
Confidence 4455555556676666545444 3344566778889999999963
No 235
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=49.09 E-value=26 Score=24.90 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=21.3
Q ss_pred EEEEEecCChh---hHHHHHHHHHHhccCCCeEEEE
Q 031202 6 TVGVGMDNSPN---SKAALRWAADNLIDSGDLIILI 38 (164)
Q Consensus 6 ~ILv~~d~s~~---s~~al~~a~~la~~~~~~l~ll 38 (164)
--|+.+-+.++ ....+++.++++...+.+|.++
T Consensus 27 g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~I 62 (291)
T 3en0_A 27 PAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGII 62 (291)
T ss_dssp CCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEE
T ss_pred ceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEE
Confidence 44666665543 3568899999887665655443
No 236
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=49.00 E-value=16 Score=26.21 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=41.8
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.+.+.+.-+-.- +..-+...++++.|++.+..+|+-.+.+...+....+......++++.++||.+-
T Consensus 21 ~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 21 FARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp HHHHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 334445544433 3334789999999999999988876654322211112234556778889999764
No 237
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=48.95 E-value=66 Score=22.51 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=42.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
++-+..+.+.+++.|+.+-+.+..-.-.+.+ .+ .+|++=+|+..-.... ...++. ...+||++=+..
T Consensus 61 ~~GL~~l~~~~~e~Glp~~te~~d~~~~~~l----~~-~vd~~~IgA~~~rn~~------ll~~~a-~~~~PV~lK~G~ 127 (267)
T 2nwr_A 61 EYGVKALRKVKEEFGLKITTDIHESWQAEPV----AE-VADIIQIPAFLCRQTD------LLLAAA-KTGRAVNVKKGQ 127 (267)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSSGGGHHHH----HT-TCSEEEECGGGTTCHH------HHHHHH-TTTSEEEEECCT
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCHHhHHHH----Hh-cCCEEEECcccccCHH------HHHHHH-cCCCcEEEeCCC
Confidence 4556667788888999999876554333333 33 3799999986544332 344443 567888875543
No 238
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=48.82 E-value=39 Score=19.90 Aligned_cols=71 Identities=7% Similarity=0.082 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVliv~ 157 (164)
....+.+...+...|..+. ...+ .++.++..+...+|+|++...-.. ..+. .....+-. ...+||+++-
T Consensus 17 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s 88 (142)
T 3cg4_A 17 AHVRIAVKTILSDAGFHII---SADS-GGQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLT 88 (142)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESS-HHHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHCCeEEE---EeCC-HHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEE
Confidence 3445566666666676543 2334 445556677788999999865221 1111 23444443 3458999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 89 ~~ 90 (142)
T 3cg4_A 89 AK 90 (142)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 239
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=48.72 E-value=53 Score=23.84 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=37.5
Q ss_pred HHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC--Ccc-ccceeeccchhHHhcCCCccEEEEeC
Q 031202 87 LDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG--LGA-LKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~--~~~-~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+...+.+.|+++... ..+..-.++ .++|.+++|... .++ .-.........-++++..+|++++=+
T Consensus 184 tA~eL~~~GI~vtlI--~Dsa~~~~M-----~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 184 TAKELASYGIPVIYV--VDSAARHYM-----KMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHHHHHTTCCEEEE--CGGGTTTTG-----GGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHhCCCCEEEE--ehHHHHHHH-----HhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEecc
Confidence 334455679988853 333333333 457999999864 222 22222222344456777899999844
No 240
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=48.62 E-value=17 Score=21.85 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCC-hhhHHHHHHHhcCCCEEEEeecC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGD-PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
-+.+.|++.+.+.|+++..+..... +...|.. ..-.++|++|+....
T Consensus 23 MAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~-~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 23 MAAQALEEAAVEAGYEVKIETQGADGIQNRLTA-QDIAEATIIIHSVAV 70 (111)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEEETTEEESCCCH-HHHHHCSEEEEEESS
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCH-HHHHhCCEEEEEeCC
Confidence 3456677788888998887655432 2222221 122234999988763
No 241
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=48.56 E-value=64 Score=22.25 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=27.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.++++|+++|.-+|-.++..+.+.. +.+++.+++...
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~~ 61 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMPSS 61 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECCCS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeCCC
Confidence 4689999999999987777666543 356777776643
No 242
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=48.37 E-value=26 Score=22.79 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-.
T Consensus 113 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTGR 149 (199)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEECC
Confidence 4689999999999988776 678899999988776543
No 243
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=48.37 E-value=40 Score=24.11 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=39.2
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++...-.....+--+-.--..|+..++.||+++.-+
T Consensus 91 rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 157 (315)
T 3si9_A 91 RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIP 157 (315)
T ss_dssp SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCc
Confidence 3555443433355444 4567899999999998654433221111123356778889999999643
No 244
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=48.31 E-value=61 Score=21.98 Aligned_cols=72 Identities=8% Similarity=0.116 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......++. ...+++.....++|-||+...... ...-..+...++||+++-
T Consensus 28 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 28 FPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEEC
Confidence 4567777888888888877653222222 345677788889999998543211 112334566789999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 100 ~~ 101 (292)
T 3k4h_A 100 KP 101 (292)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 245
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=48.30 E-value=15 Score=22.05 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=25.4
Q ss_pred CcEEEEEecCChhh----HHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNS----KAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s----~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+++++.+..++++ +.+++.|...+. .+-++.++...+.
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a-~~~~v~vff~~DG 43 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSA-LTDDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHT-TCSCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEehHH
Confidence 36899999876654 566776666553 3457766666544
No 246
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=48.19 E-value=39 Score=19.64 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=26.4
Q ss_pred cEEEEEecCC----hhhHHHHHHHHHHhccCCC-eEEEEEEeCCC
Q 031202 5 RTVGVGMDNS----PNSKAALRWAADNLIDSGD-LIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s----~~s~~al~~a~~la~~~~~-~l~ll~v~~~~ 44 (164)
+++++.+..+ +....+++.|..++...+. ++.++...+.-
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV 46 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAV 46 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHH
Confidence 4677777654 4456778888777655366 88777765544
No 247
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=48.18 E-value=38 Score=19.54 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+...+...|.++. ...+..+ .++..++..+|++++... -+...++ .....+-.. ..+||+++-.
T Consensus 13 ~~~~~l~~~l~~~g~~v~---~~~~~~~-al~~l~~~~~dlvllD~~-~p~~~g~---~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVI---EAENGQI-ALEKLSEFTPDLIVLXIM-MPVMDGF---TVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSHHH-HHHHHTTBCCSEEEECSC-CSSSCHH---HHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHHHHHHCCcEEE---EeCCHHH-HHHHHHhcCCCEEEEecc-CCCCcHH---HHHHHHHhcccccCCCEEEEec
Confidence 344556666666676554 2345444 455667788999999754 2222211 233444322 3589998865
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 85 ~ 85 (122)
T 3gl9_A 85 K 85 (122)
T ss_dssp C
T ss_pred C
Confidence 3
No 248
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=47.95 E-value=26 Score=22.63 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=29.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-.
T Consensus 109 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 4689999999999888776 677889999988766543
No 249
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=47.66 E-value=80 Score=23.12 Aligned_cols=129 Identities=17% Similarity=0.112 Sum_probs=72.7
Q ss_pred EEEEEecCC--hhhHHHHHHHHHHhcc---CCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCC
Q 031202 6 TVGVGMDNS--PNSKAALRWAADNLID---SGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSN 80 (164)
Q Consensus 6 ~ILv~~d~s--~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
+++|.+-.. ++-+.++++|.++++. .+.+|.++.-..-....++- .|-..+........+ ..
T Consensus 53 rllvIaGPCsie~~e~aleyA~~L~~~~~~l~d~l~ivmR~yfeKPRTs~-g~kGl~~dP~ld~s~------------~i 119 (350)
T 1n8f_A 53 RLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV-GWKGLINDPHMDNSF------------QI 119 (350)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCCCCSSS-SCCCTTTCTTSSSCC------------CH
T ss_pred ceEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccCcCCc-CcCCCCCCCCccccc------------cH
Confidence 455555432 4456788888877553 55566666655544444331 233333222111111 12
Q ss_pred hhHHHHHHHH---hhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTL---SRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
++=+..+++. ..+.|+.+-+++..-.-.+ ++.+. +|++-||.+.-... .-..++...++||.+=+
T Consensus 120 ~~GL~ilr~ll~~~~e~GlPv~TEvld~~~~~----~vad~-vd~~qIGAR~~esq-------~hr~~asg~~~PVg~Kn 187 (350)
T 1n8f_A 120 NDGLRIARKLLLDINDSGLPAAGEFLDMITPQ----YLADL-MSWGAIGARTTESQ-------VHRELASGLSCPVGFKN 187 (350)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCCSSTHH----HHGGG-CSEEEECTTTTTCH-------HHHHHHHTCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecCcccHH----HHhhc-CcEEEECCccccCH-------HHHHHHhcCCCeEEEec
Confidence 4445556655 6678999999876654333 33332 59999998754321 23446667899998854
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 188 gt 189 (350)
T 1n8f_A 188 GT 189 (350)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 250
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=47.42 E-value=77 Score=22.84 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=36.1
Q ss_pred HHhhhcCceEEEEEe--e-CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 89 TLSRTKGAKVVAKVY--W-GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~--~-g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
+.+.+.|+++...-. . +...+++++..++.++|++|+...++- ....++...+...+-++
T Consensus 66 ~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~i---------lp~~il~~~~~g~iNiH 128 (329)
T 2bw0_A 66 LEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQF---------IPMEIISAPRHGSIIYH 128 (329)
T ss_dssp HHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSCSSC---------CCHHHHTCSTTCEEEEE
T ss_pred HHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEeehhhh---------CCHHHHhhCcCCEEEEc
Confidence 456677887654211 1 123367888899999999999765321 23445555555444444
No 251
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=47.41 E-value=64 Score=23.46 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCCh----hhHHHHHHHhcCCCEEE-EeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDP----REKLCDAVEDLKLDTLV-VGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~----~~~I~~~a~~~~~dliv-~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.+.+.+...|+++...+..|++ .+.+.+.+++.++|+|| +|.- . ..+.+..+.....+|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGG-s-------v~D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGG-K-------TLDTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESH-H-------HHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCh-H-------HHHHHHHHHHhcCCCEEEec
Confidence 4556666666778877544555653 45666778888999888 5532 1 12344444444568999998
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 118 TTa 120 (370)
T 1jq5_A 118 TAA 120 (370)
T ss_dssp SSC
T ss_pred ccc
Confidence 654
No 252
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=47.22 E-value=32 Score=21.46 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+....-.+.-++.+.+.-++|+...+......--.+-+...+.++.||+++=++.
T Consensus 70 ~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~ 124 (141)
T 4e0q_A 70 DYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPL 124 (141)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCS
T ss_pred HHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCC
Confidence 4567777888888889999999865432111111234556677788998885433
No 253
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=47.00 E-value=43 Score=23.93 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=36.8
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+.+-.-+.. +..+. +.+.+++.++|-+++...-......--+=.--..|+..++.||+++..
T Consensus 81 rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 81 RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3455444432 44443 456688899999999755333221111112345577777899999973
No 254
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=46.80 E-value=37 Score=23.66 Aligned_cols=35 Identities=3% Similarity=0.015 Sum_probs=26.1
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+|+|+++ ..+|..++..+.++ +.++.++|+....
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDtg~ 89 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDTGR 89 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECCSC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeCCC
Confidence 57899999 88888888777665 3467788886554
No 255
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=46.79 E-value=74 Score=23.28 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=24.3
Q ss_pred ChhhHHHHHHHHHHhccC-CCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDS-GDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~-~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+.. .-+|+++|-...-
T Consensus 156 ~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvl 187 (349)
T 3blx_A 156 RPKTERIARFAFDFAKKYNRKSVTAVHKANIM 187 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEeCCccc
Confidence 355788999999999987 5679988876554
No 256
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=46.72 E-value=37 Score=18.95 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+...+...|..+.. ..+. ++..+..+...+|++++...-.. ..+. ...+.+-.. ..+|++++-.
T Consensus 12 ~~~~~l~~~l~~~g~~v~~---~~~~-~~~~~~l~~~~~dlii~d~~~~~-~~~~---~~~~~l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIW---LVDG-STALDQLDLLQPIVILMAWPPPD-QSCL---LLLQHLREHQADPHPPLVLFLG 83 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESCH-HHHHHHHHHHCCSEEEEECSTTC-CTHH---HHHHHHHHTCCCSSCCCEEEES
T ss_pred HHHHHHHHHHHhCCcEEEE---ecCH-HHHHHHHHhcCCCEEEEecCCCC-CCHH---HHHHHHHhccccCCCCEEEEeC
Confidence 4455566666666765542 3343 44455566678999999865321 1111 234444444 4589888865
Q ss_pred CC
Q 031202 159 NP 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 84 ~~ 85 (119)
T 2j48_A 84 EP 85 (119)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 257
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=46.64 E-value=44 Score=19.85 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEEEeCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTVVKGN 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVliv~~~ 159 (164)
..+.+...+...|..+. ...+. ++.++..+...+|+||+...-.. ..+. .....+-. ...+||+++-..
T Consensus 20 ~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 20 ALAASISALSQEGFDII---QCGNA-IEAVPVAVKTHPHLIITEANMPK-ISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp GGHHHHHHHHHHTEEEE---EESSH-HHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHHHcCCeEE---EeCCH-HHHHHHHHcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 33444445555565443 23443 44456666678999999865221 1111 23444443 345899988653
No 258
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=46.62 E-value=51 Score=20.55 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=27.1
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
|++ -.|++..-+. .+...++.+-.++. ....+..+.+.+..
T Consensus 1 M~~-igiii~sHG~-~A~gl~~~~~~i~G-~~~~v~av~~~~~~ 41 (144)
T 3lfh_A 1 MKE-KFVLIITHGD-FGKGLLSGAEVIIG-KQENVHTVGLNLGD 41 (144)
T ss_dssp CCC-EEEEEEEETT-HHHHHHHHHHHHHC-CCSSEEEEEECTTC
T ss_pred CCc-ceEEEEeCcH-HHHHHHHHHHHHcC-CCCcEEEEEccCCC
Confidence 444 4788888886 66666665555554 34678888876654
No 259
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=46.21 E-value=39 Score=23.85 Aligned_cols=65 Identities=12% Similarity=0.035 Sum_probs=38.5
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++.........+--+-.--..|+..++.||+++.-+
T Consensus 71 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 137 (292)
T 3daq_A 71 RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVP 137 (292)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECH
T ss_pred CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 3555544444455444 4567888999999887654333221111123455777779999999643
No 260
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=46.17 E-value=48 Score=22.80 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhcCceEEEEEee-C-------Ch--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCcc
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW-G-------DP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCP 152 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~-g-------~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~p 152 (164)
....+.+.++..|+.+...+.. | ++ ...+.+.+.+.++|+|.++.. ..+ .....+....++|
T Consensus 133 ~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~ip 204 (273)
T 2qjg_A 133 DLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPAP 204 (273)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCCC
Confidence 3455666777778877654311 1 11 234447788899999988731 111 2345667677899
Q ss_pred EEEEeC
Q 031202 153 VTVVKG 158 (164)
Q Consensus 153 Vliv~~ 158 (164)
|+....
T Consensus 205 vva~GG 210 (273)
T 2qjg_A 205 VVVAGG 210 (273)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 988754
No 261
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=46.16 E-value=75 Score=22.39 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhh---HHHHHHHh-cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPRE---KLCDAVED-LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~---~I~~~a~~-~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
....+-+.+.+.+.|.++......++... .|...... .++|-||+... .... ...-..+....+||+++
T Consensus 20 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~-~~~~------~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 20 VSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-QYVA------PQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-SSHH------HHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc-hhhH------HHHHHHHHhCCCcEEEE
Confidence 46677777888888988886544456543 33444444 68999998642 1111 11233566788999998
Q ss_pred eCCC
Q 031202 157 KGNP 160 (164)
Q Consensus 157 ~~~~ 160 (164)
-...
T Consensus 93 ~~~~ 96 (350)
T 3h75_A 93 NSPL 96 (350)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 6543
No 262
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=46.13 E-value=18 Score=26.24 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC-Cccccc-eeeccchhHHhcCCCccEEEEeC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG-LGALKR-VLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~-~~~~~~-~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+..+.++.+++. |+||+|..+ .+.+.. ++...+.+. +.++++|++.|.+
T Consensus 166 ~~~p~~l~AI~~A--D~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 217 (332)
T 2ppv_A 166 EPMNEAIEALEQA--DLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSN 217 (332)
T ss_dssp CCCHHHHHHHHHC--SEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECC
T ss_pred CCCHHHHHHHHhC--CEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcC
Confidence 3467888888888 999999542 334332 334444454 6778999888864
No 263
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=46.04 E-value=36 Score=24.37 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=27.1
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|.......+....+ +|.||+.+...+ ..+.+.+++.+||+
T Consensus 83 gEsl~DTarvls~~-~D~iviR~~~~~---------~~~~lA~~~~vPVI 122 (306)
T 4ekn_B 83 GESLIDTIRVISGY-ADIIVLRHPSEG---------AARLASEYSQVPII 122 (306)
T ss_dssp SCCHHHHHHHHHHH-CSEEEEECSSTT---------HHHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHh-CcEEEEEcCChH---------HHHHHHHhCCCCEE
Confidence 54555555666666 499999766432 35667888899986
No 264
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=45.95 E-value=41 Score=24.51 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=29.3
Q ss_pred eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 103 YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 103 ~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
..|+......+....+ +|.||+.+... ...+.+++++.+||+=
T Consensus 110 ~kgEsl~DTarvLs~y-~D~IviR~~~~---------~~~~~lA~~~~vPVIN 152 (340)
T 4ep1_A 110 GRGETVSDTAKVLSHY-IDGIMIRTFSH---------ADVEELAKESSIPVIN 152 (340)
T ss_dssp ---CCTTHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHh-CCEEEEecCCh---------hHHHHHHHhCCCCEEe
Confidence 3466666667777777 89999976532 3467788899999873
No 265
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=45.89 E-value=48 Score=20.06 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~ 157 (164)
....+.+...+...|..+.. ..+ .++.++..++..+|+|++...-. ...++ .....+-.. ..+||+++-
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~---~~~-~~~al~~l~~~~~dlii~D~~l~-~~~g~---~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 17 PTQAEHLKHILEETGYQTEH---VRN-GREAVRFLSLTRPDLIISDVLMP-EMDGY---ALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHHHHHHHHTTTCEEEE---ESS-HHHHHHHHTTCCCSEEEEESCCS-SSCHH---HHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE---eCC-HHHHHHHHHhCCCCEEEEeCCCC-CCCHH---HHHHHHHhCCCcCCCCEEEEE
Confidence 34556666667767765432 344 34455666778899999986421 11111 233444333 458999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 89 ~~ 90 (154)
T 3gt7_A 89 IL 90 (154)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 266
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=45.74 E-value=78 Score=22.42 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=15.5
Q ss_pred hhhHHHHHHHhcCCCEEEE
Q 031202 107 PREKLCDAVEDLKLDTLVV 125 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~ 125 (164)
..+.|.+.+++.++|+|+.
T Consensus 117 ~~~~l~~~ir~~rP~vV~t 135 (303)
T 1q74_A 117 TVGALVAIIRELRPHVVVT 135 (303)
T ss_dssp HHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 4567888899999998876
No 267
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=45.30 E-value=57 Score=20.77 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL 133 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~ 133 (164)
++..+.++..+.. -++.....+| ...+++++.+++.+|.|.+.-+.+
T Consensus 52 ~~R~~m~~~~~~~--~~v~V~~~~~----l~~~~~~~~~~~~~v~G~r~~~Df 98 (162)
T 4f3r_A 52 EERVNLIADVLTD--ERVEVLPLTG----LLVDFAKTHQANFILRGLRAVSDF 98 (162)
T ss_dssp HHHHHHHHHHCCC--TTEEEEECCS----CHHHHHHHTTCCEEEEEECSHHHH
T ss_pred HHHHHHHHHhhCC--CCEEEEeccc----hHHHHHHHcCCCEEEECCCchhhh
Confidence 4455555555443 2333323333 345788889999999997755444
No 268
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=45.24 E-value=60 Score=21.00 Aligned_cols=48 Identities=13% Similarity=-0.007 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEe
Q 031202 79 SNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVG 126 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g 126 (164)
..+.-...+.+.+.+.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 20 i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 20 TVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred EEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 344556677888888899887765555444444443322 136998874
No 269
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=45.22 E-value=12 Score=22.21 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-ChhhHH-HHHHHhcCCCEEEEeecCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-DPREKL-CDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I-~~~a~~~~~dliv~g~~~~ 130 (164)
+-+.+++.+.+.|++++.+.... .+...+ .+.+. ++|++++.....
T Consensus 21 AAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~~ 68 (106)
T 2m1z_A 21 AAQALKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEecccc
Confidence 35567777788898888765543 222223 12333 349999987643
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=45.14 E-value=96 Score=23.29 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=14.3
Q ss_pred HHHHHHhcCCCEEEEeecCCcc
Q 031202 111 LCDAVEDLKLDTLVVGSRGLGA 132 (164)
Q Consensus 111 I~~~a~~~~~dliv~g~~~~~~ 132 (164)
.++.++..++|++++-+.++..
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRLQ 193 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCSS
T ss_pred HHHHHHHCCCCEEEEcCCCccc
Confidence 4445555677988887665543
No 271
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=44.88 E-value=89 Score=22.84 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=39.5
Q ss_pred HHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC--CccccceeeccchhHHhcCCCccEEEEeC
Q 031202 89 TLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG--LGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~--~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
..+.+.|+++... .. .++-...++.++|.+++|... .++.-.........-++++..+|++++=+
T Consensus 200 ~eL~~~GI~vtlI--~D---sa~~~~M~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 200 WELMEDGIDVTLI--TD---SMVGIVMQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHHHTTCCEEEE--CG---GGHHHHHHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHhCCCCEEEE--eh---hHHHHHhhcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEEeCc
Confidence 3455668888853 22 344555666778999999864 22221112222344466777899999854
No 272
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=44.82 E-value=70 Score=21.61 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=23.7
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
|....++++++|..+.. .+..++...+..+..+++-.
T Consensus 9 m~~~~~lilAlD~~~~~-----~a~~~v~~~~~~v~~~Kvg~ 45 (228)
T 3m47_A 9 MDVMNRLILAMDLMNRD-----DALRVTGEVREYIDTVKIGY 45 (228)
T ss_dssp CCCGGGEEEECCCCSHH-----HHHHHHHTTTTTCSEEEEEH
T ss_pred hhcCCCeEEEeCCCCHH-----HHHHHHHHcCCcccEEEEcH
Confidence 44456899999998643 34555555665566777743
No 273
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=44.72 E-value=72 Score=21.79 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+-+.+.+.+.|.++...- .+++. ...++.....++|-||+......... ..-.-+....+||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~------~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 18 QTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGS------AIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEE-CCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHH------HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhH------HHHHHHHHCCCcEEEeCC
Confidence 4566677777777887775432 24543 33455566678999999754322111 112245567899999863
No 274
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=44.42 E-value=21 Score=25.86 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC-Ccccc-ceeeccchhHHhcCCCccEEEEeC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG-LGALK-RVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~-~~~~~-~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+..+.++.+++. |+||+|..+ .+.+. .++...+.+. +.++++|++.+.+
T Consensus 167 ~~~p~~l~AI~~A--D~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 218 (323)
T 2o2z_A 167 KPLREGLEAIRKA--DVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICN 218 (323)
T ss_dssp CCCHHHHHHHHHC--SEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECC
T ss_pred CCCHHHHHHHHhC--CEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcC
Confidence 3567888888887 999999542 33433 2344445555 6778899888864
No 275
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=43.96 E-value=19 Score=26.23 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=32.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecC-Ccccc-ceeeccchhHHhcCCCccEEEEeC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRG-LGALK-RVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~-~~~~~-~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.+..+.++.+++. |+||+|..+ .+++. .++...+.+. +.++++|++.|.+
T Consensus 177 ~a~p~al~AI~~A--D~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 177 QAVQPVIDAIMAA--DQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCCHHHHHHHHHC--SEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHHhC--CEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 3456678888887 999999542 33433 2344444554 6778888888764
No 276
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=43.83 E-value=70 Score=21.38 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEEe--eCChhh--HHHHHHHhcC-CCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVY--WGDPRE--KLCDAVEDLK-LDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~--~g~~~~--~I~~~a~~~~-~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
....+.+.+.+.+.|.++..... .+++.. ..++.....+ +|-||+......... ..-..+...++||++
T Consensus 16 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~------~~~~~~~~~~ipvV~ 89 (276)
T 3ksm_A 16 RQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLT------PSVAQYRARNIPVLV 89 (276)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTH------HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHH------HHHHHHHHCCCcEEE
Confidence 46677778888888988775432 234433 3455555566 999999754222111 122345667899999
Q ss_pred EeCC
Q 031202 156 VKGN 159 (164)
Q Consensus 156 v~~~ 159 (164)
+-..
T Consensus 90 ~~~~ 93 (276)
T 3ksm_A 90 VDSD 93 (276)
T ss_dssp ESSC
T ss_pred EecC
Confidence 8643
No 277
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=43.58 E-value=76 Score=21.72 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=52.7
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhH
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEV 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
|+...+++-++. ..+++...+.-...+.++.++...+.. +...++
T Consensus 8 ~~~~~~tlGFd~--~~~vral~~~g~~~~d~ViLv~~~~~~---------------------------------~~~~~A 52 (244)
T 2wte_A 8 MKSYFVTMGFNE--TFLLRLLNETSAQKEDSLVIVVPSPIV---------------------------------SGTRAA 52 (244)
T ss_dssp CCEEEECCCSCC--HHHHHHHHHTTCCTTSEEEEEEESSCC---------------------------------HHHHHH
T ss_pred hhhheeccCcCh--HHHHHHHHHhCCCCCCEEEEEeCCCcc---------------------------------hhHHHH
Confidence 567788888874 345666666555567788887764432 234677
Q ss_pred HHHHHHHhhhcC-ceEEEEEeeC-ChhhHHH---HHHHhcCCCEEE
Q 031202 84 LDILDTLSRTKG-AKVVAKVYWG-DPREKLC---DAVEDLKLDTLV 124 (164)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~v~~g-~~~~~I~---~~a~~~~~dliv 124 (164)
.+.+++.+...| ++++.....- ++.+.+. +......-+++|
T Consensus 53 ~~~i~~~l~~~~~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iiv 98 (244)
T 2wte_A 53 IESLRAQISRLNYPPPRIYEIEITDFNLALSKILDIILTLPEPIIS 98 (244)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEE
T ss_pred HHHHHHHHHHcCCCceEEEEECCccHHHHHHHHHHHHhhcCCcEEE
Confidence 888888888775 4776654443 6655444 444443225666
No 278
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=43.21 E-value=35 Score=21.78 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-...
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~-~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLE-ALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCC
Confidence 4689999999988887665 66778889998887766543
No 279
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=43.18 E-value=64 Score=20.69 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=26.9
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHH----HHhcCCCEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDA----VEDLKLDTLVVG 126 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~----a~~~~~dliv~g 126 (164)
.-...+.+.+.+.|.++......+|-.+.|.+. +.+.++|+||..
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred ccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 344566777777898877654455433444333 332258999884
No 280
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=43.04 E-value=78 Score=21.65 Aligned_cols=74 Identities=7% Similarity=0.026 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHhhhcCceEEEEE-eeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKV-YWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v-~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.....+.+.+.+.+.|..+.... ..++.. ...++.....++|-||+.......... .-.-+....+||+++
T Consensus 19 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~------~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 19 WKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD------TINKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH------HHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH------HHHHHHHCCCcEEEE
Confidence 34677778888888898887632 234544 345566667889999986543221111 122345578999998
Q ss_pred eCC
Q 031202 157 KGN 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 93 ~~~ 95 (305)
T 3g1w_A 93 DSG 95 (305)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 281
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=42.97 E-value=45 Score=24.48 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=35.5
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|...+.+.|..+-.. +..|.......+....+ +|.||+.+... ...+.+.+++.+||+
T Consensus 59 FE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y-~D~IviR~~~~---------~~~~~lA~~~~vPVI 122 (355)
T 4a8p_A 59 FETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRL-VDILMARVERH---------HSIVDLANCATIPVI 122 (355)
T ss_dssp HHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred HHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEecCcH---------HHHHHHHHhCCCCEE
Confidence 334444456555432 22354555556666666 89999976532 346678888999986
No 282
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=42.96 E-value=83 Score=24.26 Aligned_cols=30 Identities=10% Similarity=-0.034 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHhccC-CCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDS-GDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~-~~~l~ll~v~~~~ 44 (164)
..++..+++|+++|+.. +.+|+++|-...-
T Consensus 165 ~~ieRIar~AFe~A~~r~rkkVT~V~KaNVl 195 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEGRKKVHCATKSNIM 195 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCCch
Confidence 55788999999999987 5789988876654
No 283
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=42.64 E-value=14 Score=27.55 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=38.9
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
.-.+.+.+.+++.++|-||.-.........+......+.+.+...+|++.+-.+.
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~ 375 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQ 375 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 4578899999999999999876655544333233344466677899999986443
No 284
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=42.62 E-value=34 Score=21.75 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=30.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+..|+++.++.-...
T Consensus 96 ~~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITA-LIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHTTTCCEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEEECCCC
Confidence 4689999999988887665 56778889998877765443
No 285
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=42.61 E-value=27 Score=25.28 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=29.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
++|.++.|++...+.|...++......+..+.++.
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~ 230 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ 230 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 58999999999999999999998887777776653
No 286
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=42.56 E-value=81 Score=23.12 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=24.5
Q ss_pred ChhhHHHHHHHHHHhccC-CCeEEEEEEeCCC
Q 031202 14 SPNSKAALRWAADNLIDS-GDLIILIHVQPPN 44 (164)
Q Consensus 14 s~~s~~al~~a~~la~~~-~~~l~ll~v~~~~ 44 (164)
...++..+++|+++|+.. ..+|+++|-...-
T Consensus 162 ~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvl 193 (354)
T 3blx_B 162 RDASERVIRYAFEYARAIGRPRVIVVHKSTIQ 193 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEECCcch
Confidence 355788899999999987 6689988876654
No 287
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=42.50 E-value=14 Score=21.99 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhcCceEEEEEeeC-ChhhHHHH-HHHhcCCCEEEEeecC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWG-DPREKLCD-AVEDLKLDTLVVGSRG 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~-~a~~~~~dliv~g~~~ 129 (164)
+.+.|++.+.+.|+++..+.... .+...|.. .+.+- |++|+....
T Consensus 21 AaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~A--d~VIiA~d~ 67 (106)
T 2r4q_A 21 AADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDA--PAIIVAADK 67 (106)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHC--SCEEEEESS
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhC--CEEEEEeCC
Confidence 44566667777788877765443 22223333 33444 888887653
No 288
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=42.38 E-value=29 Score=22.67 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.8
Q ss_pred ccEEEEe
Q 031202 151 CPVTVVK 157 (164)
Q Consensus 151 ~pVliv~ 157 (164)
+|+++|+
T Consensus 64 ~pv~~v~ 70 (228)
T 1uf3_A 64 LPTAYVP 70 (228)
T ss_dssp SCEEEEC
T ss_pred CcEEEEC
Confidence 3444433
No 289
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=42.35 E-value=39 Score=21.57 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=30.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+..|+++.++.-...
T Consensus 87 ~~d~~i~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVA-ALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp TTEEEEEECCSSCCHHHHH-HHHHHHHTTCCEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEEeCCCC
Confidence 4689999999988877666 57778889998887775444
No 290
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=41.97 E-value=55 Score=19.61 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHH--------HhcCCCEEEEeecCCccccceeeccchhHHhc---CC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAV--------EDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NS 149 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a--------~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~ 149 (164)
....+.+...+...|..+... ...+..+++...- ....+|+|++...- ....++ ...+.+-. ..
T Consensus 14 ~~~~~~l~~~L~~~g~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~---~~~~~lr~~~~~~ 88 (152)
T 3heb_A 14 LGHARLIEKNIRRAGVNNEII-AFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGI---DILKLVKENPHTR 88 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCCEE-EESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHH---HHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHhCCCcceEE-EeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHH---HHHHHHHhccccc
Confidence 345566667777777743332 2345444444432 46778999997542 111111 23444443 23
Q ss_pred CccEEEEeCC
Q 031202 150 SCPVTVVKGN 159 (164)
Q Consensus 150 ~~pVliv~~~ 159 (164)
.+||+++-..
T Consensus 89 ~~pii~~t~~ 98 (152)
T 3heb_A 89 RSPVVILTTT 98 (152)
T ss_dssp TSCEEEEESC
T ss_pred CCCEEEEecC
Confidence 5888888654
No 291
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=41.77 E-value=53 Score=25.49 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=47.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEe-----eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 82 EVLDILDTLSRTKGAKVVAKVY-----WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~-----~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.++..+.+.+++.|.++...-. .|++.+.|.+.+++.+++-|.+.....-. .++-++..+++|-++
T Consensus 67 saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~e~r---------~~~~l~~~gi~v~~~ 137 (522)
T 3zxs_A 67 AAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPGDWR---------LIEALEAMPLPVRFL 137 (522)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCSCHH---------HHHHHHHSSSCEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcchHH---------HHHHHHHcCCcEEEe
Confidence 4566666777777999886421 38899999999999999999987332211 122233338888888
Q ss_pred eCC
Q 031202 157 KGN 159 (164)
Q Consensus 157 ~~~ 159 (164)
+.+
T Consensus 138 ~~~ 140 (522)
T 3zxs_A 138 PDD 140 (522)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 292
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=41.58 E-value=56 Score=19.64 Aligned_cols=69 Identities=10% Similarity=0.192 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~~ 158 (164)
...+.+...+...|..+.. ..+ .++.++..+...+|+|++...-.. ..+. .....+-.. ..+||+++-.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 14 DLRKAMQQTLELAGFTVSS---FAS-ATEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESC-HHHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHcCcEEEE---ECC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 4455556666666765442 344 344556667778999999865221 1111 123333333 3589988854
No 293
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=41.53 E-value=31 Score=24.47 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=43.4
Q ss_pred HhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccc-cc-eeeccchhHHhc--CCCccEEEE
Q 031202 90 LSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGAL-KR-VLLGSVSNHVVT--NSSCPVTVV 156 (164)
Q Consensus 90 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~-~~-~~~gs~~~~v~~--~~~~pVliv 156 (164)
.+.+.+.-+-.- +..-+...+|++.|++.+..+|+-.+.+...+ .+ ..+......+++ +.++||.+-
T Consensus 15 ~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 15 KALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp HHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 333345444433 33338899999999999999888776543222 11 124455667788 899999874
No 294
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=41.39 E-value=58 Score=19.74 Aligned_cols=72 Identities=8% Similarity=0.127 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhc--CCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDL--KLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~--~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~ 157 (164)
....+.+...+...|..+.. ...+..+. ++.+++. .+|+|++...-. ...++ ...+.+-... .+||+++-
T Consensus 46 ~~~~~~l~~~L~~~g~~v~~--~~~~~~~a-l~~l~~~~~~~dliilD~~l~-~~~g~---~~~~~lr~~~~~~~ii~ls 118 (157)
T 3hzh_A 46 VFTVKQLTQIFTSEGFNIID--TAADGEEA-VIKYKNHYPNIDIVTLXITMP-KMDGI---TCLSNIMEFDKNARVIMIS 118 (157)
T ss_dssp HHHHHHHHHHHHHTTCEEEE--EESSHHHH-HHHHHHHGGGCCEEEECSSCS-SSCHH---HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEE--EECCHHHH-HHHHHhcCCCCCEEEEeccCC-CccHH---HHHHHHHhhCCCCcEEEEe
Confidence 45566677777777766531 34454444 4444555 789999975522 11111 2233443333 48888886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 119 ~~ 120 (157)
T 3hzh_A 119 AL 120 (157)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 295
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=41.35 E-value=53 Score=19.24 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhhh-cCce-EEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEE
Q 031202 81 PEVLDILDTLSRT-KGAK-VVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTV 155 (164)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~-~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVli 155 (164)
......+...+.. .|.. +.. ..+ .++.++..+...+|+|++...-. ...+. ...+.+-. ...+||++
T Consensus 18 ~~~~~~l~~~L~~~~~~~~v~~---~~~-~~~a~~~l~~~~~dlii~d~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~ 89 (143)
T 3cnb_A 18 KEFADMLTQFLENLFPYAKIKI---AYN-PFDAGDLLHTVKPDVVMLDLMMV-GMDGF---SICHRIKSTPATANIIVIA 89 (143)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEE---ECS-HHHHHHHHHHTCCSEEEEETTCT-TSCHH---HHHHHHHTSTTTTTSEEEE
T ss_pred HHHHHHHHHHHHhccCccEEEE---ECC-HHHHHHHHHhcCCCEEEEecccC-CCcHH---HHHHHHHhCccccCCcEEE
Confidence 3445566666666 6776 332 334 34455666777899999986522 11111 23444443 24589988
Q ss_pred EeCC
Q 031202 156 VKGN 159 (164)
Q Consensus 156 v~~~ 159 (164)
+-..
T Consensus 90 ~s~~ 93 (143)
T 3cnb_A 90 MTGA 93 (143)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8643
No 296
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=41.34 E-value=73 Score=20.85 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh---cCCCEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED---LKLDTLVVG 126 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliv~g 126 (164)
.+.--..+...+++.|.++.......|-.+.|.+..++ .++|+||..
T Consensus 47 ~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 47 EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 44555677778888898877664445434444444332 468999884
No 297
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=41.22 E-value=52 Score=22.29 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=27.1
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.++.+...+.++|.|.+.............-.....+.+..++||++.
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 456666677778888775443222111111234566677777888775
No 298
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=41.01 E-value=83 Score=21.40 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=41.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCCh--hhH---HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDP--REK---LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~---I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
....+.+.+.+.+.|..+......++. ... .++.....++|-||+...... . ...+ .+....+||++
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~ 95 (290)
T 2rgy_A 24 GTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLD-ELHRMHPKMVF 95 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHH-HHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHH-HHhhcCCCEEE
Confidence 456677777777888876643323333 234 666677788999888643221 1 1122 23446789888
Q ss_pred EeC
Q 031202 156 VKG 158 (164)
Q Consensus 156 v~~ 158 (164)
+-.
T Consensus 96 ~~~ 98 (290)
T 2rgy_A 96 LNR 98 (290)
T ss_dssp ESS
T ss_pred Ecc
Confidence 854
No 299
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=40.94 E-value=26 Score=21.84 Aligned_cols=41 Identities=5% Similarity=0.011 Sum_probs=27.2
Q ss_pred HHhhhcCceEEEEE--eeC-C--hhhHHHHHHHhcCCCEEEEeecC
Q 031202 89 TLSRTKGAKVVAKV--YWG-D--PREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~v--~~g-~--~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
++.++.|++++..- .+| + ....|.+..++.++|+||--..+
T Consensus 61 ~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 61 DWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp HHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred HHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC
Confidence 34456788877631 222 2 00469999999999999987654
No 300
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=40.94 E-value=82 Score=21.29 Aligned_cols=72 Identities=8% Similarity=0.069 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEe--eCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVY--WGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~--~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
....+.+.+.+.+.|.++..... .+++. ...++.....++|-||+.......... ... .+....+||+++
T Consensus 23 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~-----~~~-~~~~~~iPvV~~ 96 (289)
T 3brs_A 23 SVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD-----AAK-EIKDAGIKLIVI 96 (289)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHH-----HHT-TTGGGTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHH-----HHH-HHHHCCCcEEEE
Confidence 35667777777788877765332 23443 345666667889999986543221101 111 233467899888
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 97 ~~ 98 (289)
T 3brs_A 97 DS 98 (289)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 301
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=40.89 E-value=69 Score=23.62 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHhccC-------------CCeEEEEEEeCC
Q 031202 15 PNSKAALRWAADNLIDS-------------GDLIILIHVQPP 43 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~-------------~~~l~ll~v~~~ 43 (164)
..++..+++|+++|+.. ..+|+++|-...
T Consensus 162 ~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNV 203 (366)
T 3ty4_A 162 EASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNV 203 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcc
Confidence 45678888888888765 568998886544
No 302
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=40.82 E-value=52 Score=19.05 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+...+...|.... ....+..+++........+|+|++...- ....++ ...+.+-.. ..+||+++-.
T Consensus 16 ~~~~~l~~~L~~~g~~~v--~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~---~~~~~lr~~~~~~~~pii~~s~ 89 (129)
T 3h1g_A 16 TMRRIIKNTLSRLGYEDV--LEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGL---DLVKKVRSDSRFKEIPIIMITA 89 (129)
T ss_dssp HHHHHHHHHHHHTTCCCE--EEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHH---HHHHHHHTSTTCTTCCEEEEES
T ss_pred HHHHHHHHHHHHcCCcEE--EEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHH---HHHHHHHhcCCCCCCeEEEEeC
Confidence 445566666666675421 2345556666555555578999996541 211111 233444332 3589998865
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 90 ~ 90 (129)
T 3h1g_A 90 E 90 (129)
T ss_dssp C
T ss_pred C
Confidence 4
No 303
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=40.63 E-value=23 Score=25.09 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=43.1
Q ss_pred hhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCccccc-eeeccchhHHhcCCCccEEEE
Q 031202 92 RTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKR-VLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 92 ~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~-~~~gs~~~~v~~~~~~pVliv 156 (164)
.+.+.-+-.- +..-+..+++++.|++.+.-+|+-.+.+...+.+ ..+......++++.++||.+-
T Consensus 14 ~~~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValH 80 (286)
T 1gvf_A 14 QANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_dssp HHHTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEE
T ss_pred HHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3334444332 3344789999999999999888877665322211 123467777888899998874
No 304
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=40.53 E-value=31 Score=23.25 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=19.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
..++.+++|..+. ..+++.+-++ +..+..+++
T Consensus 5 ~~~livAlD~~~~-~~a~~~~~~~----~~~~~~ikv 36 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITAAVSV----GNEVDVIEA 36 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHHH----GGGCSEEEE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHhh----CCCceEEEE
Confidence 3479999999864 3455555544 333445555
No 305
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=40.36 E-value=63 Score=20.23 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=52.2
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHH
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVL 84 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
..|++...+ ..+...++.+-.++.. ...+..+.+.+.... ....
T Consensus 2 igiii~sHg-~~A~gl~~~~~~i~G~-~~~i~av~~~~~~~~----------------------------------~~~~ 45 (150)
T 3ipr_A 2 LGIVIATHG-ALSDGAKDAATVIMGA-TENIETVNLNSGDDV----------------------------------QALG 45 (150)
T ss_dssp CEEEEEEET-THHHHHHHHHHHHHSC-CCSEEEEEECTTCCH----------------------------------HHHH
T ss_pred CEEEEEECc-HHHHHHHHHHHHHcCC-CCCEEEEEecCCCCH----------------------------------HHHH
Confidence 578888888 6677677766666543 467888877755432 2233
Q ss_pred HHHHHHhh----hcCceEEEEEeeCChhhHHHHHHHhc----CCCEEEEeec
Q 031202 85 DILDTLSR----TKGAKVVAKVYWGDPREKLCDAVEDL----KLDTLVVGSR 128 (164)
Q Consensus 85 ~~~~~~~~----~~~~~~~~~v~~g~~~~~I~~~a~~~----~~dliv~g~~ 128 (164)
+++.+... ..|+=+-+-...|+|...-...+.+. +.+.-|+..-
T Consensus 46 ~~i~~~i~~~~~~~gvlvLtDl~GGSp~n~a~~~~~~~~~~~~~~v~vI~Gv 97 (150)
T 3ipr_A 46 GQIKTAIENVQQGDGVLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGT 97 (150)
T ss_dssp HHHHHHHHHHCSSSCEEEEESSTTSHHHHHHHHHHTTSCHHHHTTEEEEESC
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHhhhhccCCCEEEEeCC
Confidence 33333333 23444444344578888877777662 3466666543
No 306
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=40.31 E-value=91 Score=21.66 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=42.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEE-eeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKV-YWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v-~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
....+-+.+.+.+.|.++.... ..+++.. ..++.....++|.||+......... ... ..+....+||+.+-
T Consensus 19 ~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~-----~~~-~~a~~~gipvV~~d 92 (316)
T 1tjy_A 19 TSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-----PAL-KRAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTH-----HHH-HHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHH-HHHHHCcCEEEEec
Confidence 3556666777777787766421 2345543 3455555678999999754332111 112 23455789999885
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 93 ~~ 94 (316)
T 1tjy_A 93 SD 94 (316)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 307
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=40.31 E-value=18 Score=23.91 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=37.0
Q ss_pred HhhhcCceEEEEEeeCChhhHHHHHHHhcC--CCEEEEeecCC--c-cccceeecc-chhHHhcCCCccEEEEeC
Q 031202 90 LSRTKGAKVVAKVYWGDPREKLCDAVEDLK--LDTLVVGSRGL--G-ALKRVLLGS-VSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 90 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~--~dliv~g~~~~--~-~~~~~~~gs-~~~~v~~~~~~pVliv~~ 158 (164)
.+.+.|+++... ..+ ++-...++.+ +|.+++|...- + ..... .|+ ...-++++..+|++++=+
T Consensus 25 eL~~~gI~vtlI--~Ds---a~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nk-iGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 25 ELVYDKIPSTLI--TDS---SIAYRIRTSPIPIKAAFVGADRIVRNGDTANK-IGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHHHTCCBEEB--CGG---GHHHHHHHCSSCEEEEEECCSEECTTSCEEEE-TTHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHcCCCEEEE--ech---HHHHHHHhCCCCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcCCCEEEecc
Confidence 345568888752 333 3444455555 89999998642 2 22222 333 334455667899999844
No 308
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=40.26 E-value=51 Score=18.74 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+.. +.....+...+|++++...- ....+. .....+-.. ..+|++++-.
T Consensus 12 ~~~~~l~~~L~~~~~~v~---~~~~~~-~a~~~~~~~~~dlvi~D~~l-~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 12 LNMKLFHDLLEAQGYETL---QTREGL-SALSIARENKPDLILMDIQL-PEISGL---EVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESCHH-HHHHHHHHHCCSEEEEESBC-SSSBHH---HHHHHHHHSTTTTTSCEEEEC-
T ss_pred HHHHHHHHHHHHcCcEEE---EeCCHH-HHHHHHhcCCCCEEEEeCCC-CCCCHH---HHHHHHHcCccccCCcEEEEEC
Confidence 444555666666676543 234444 44455667789999998542 111111 234444432 3589988854
No 309
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=40.23 E-value=70 Score=23.49 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
..+.++......++++-.+...+....+..+.+.+.++|.|+++.++.
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GG 222 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCC
Confidence 566666666666888876643334456778889999999999976654
No 310
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=40.12 E-value=35 Score=23.28 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 110 KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 110 ~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.++.+.+.+.|.|.+|.+..-.... .-...+.+- ..+.|+++.|..+
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~--~~~~v~~ik-~~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDN--VLRMMSKVR-RFLVPCVLEVSAI 69 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHH--HHHHHHHHT-TSSSCEEEECSCG
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHH--HHHHHHHhh-ccCCCEEEeCCCH
Confidence 45566678889999999753211111 122334333 3789999988653
No 311
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=39.80 E-value=22 Score=25.76 Aligned_cols=49 Identities=8% Similarity=0.315 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhcCCCEEEEeecC-Ccccc-ceeeccchhHHhcCCCccEEEEeC
Q 031202 107 PREKLCDAVEDLKLDTLVVGSRG-LGALK-RVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dliv~g~~~-~~~~~-~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
+..+.++.+++. |+||+|..+ .+.+. .++...+.+. +.++++|++.|.+
T Consensus 174 a~p~al~AI~~A--D~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 174 ASRRVVQTILES--DMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp BCSHHHHHHHHC--SEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCHHHHHHHHhC--CEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 456788888887 999999542 33433 2334444554 6778889888864
No 312
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=39.79 E-value=45 Score=22.25 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeec-CCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSR-GLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~-~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+..++.+.+++.+.+++--.. -..|..+....+.. .+.++|++..+ +.......-|..-..+-++....+|+.-.
T Consensus 28 T~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~t 105 (201)
T 1vp8_A 28 TEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQS 105 (201)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEe
Confidence 4677888888888888774432 22356666666655 45789999854 33333344566677777888888887644
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 106 H 106 (201)
T 1vp8_A 106 H 106 (201)
T ss_dssp C
T ss_pred c
Confidence 3
No 313
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=39.70 E-value=82 Score=20.99 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ..+++.....++|-||+....... ...-..+...++||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 18 ARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE-------DDSYRELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-------CCHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-------HHHHHHHHHcCCCEEEEcc
Confidence 4677778888888898887654444543 456677777899999986543111 1122345567899998865
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 91 ~ 91 (272)
T 3o74_A 91 R 91 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 314
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=39.68 E-value=40 Score=23.17 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCCC
Q 031202 110 KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGNP 160 (164)
Q Consensus 110 ~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~~ 160 (164)
+.++.+.+.+.|.|.+|....-.... .-...+.+ +..+.|+++.|..+
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~--~~~~v~~i-k~~~~Piil~p~~~ 74 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDN--VIHLMSKI-RRYPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHH--HHHHHHHH-TTSCSCEEEECCCS
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHH--HHHHHHHh-cCcCCCEEEecCCH
Confidence 45666778899999999753222221 12234433 34789999988643
No 315
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=39.45 E-value=46 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=29.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
++|.++.|++...+.|...++......+.++.++.
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~ 322 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVY 322 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 68999999999999999888888777777777653
No 316
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=39.41 E-value=39 Score=21.78 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=29.9
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-...
T Consensus 116 ~~d~vI~iS~SG~t~~~~~-~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILA-AFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECSCC
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCeEEEEECCCC
Confidence 4689999999988877665 67788889998877755433
No 317
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=39.40 E-value=78 Score=22.94 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=27.7
Q ss_pred cEEEEEecCChhhHHHHHHHHHHh---ccCCCeEEEEEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNL---IDSGDLIILIHV 40 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la---~~~~~~l~ll~v 40 (164)
++|.++.|++...+.|...+...+ ...+.++.++..
T Consensus 207 ~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~l 245 (338)
T 1dd9_A 207 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFL 245 (338)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEE
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 689999999999999999888873 334666665544
No 318
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=39.29 E-value=43 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=32.3
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNA 45 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
.+.++|.+..|..+...++ +++.|+..|+++..+.-.....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~-~~~~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 114 EDDILLVITTSGDSENILS-AVEEAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEETTCCG
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCcEEEEECCCCCH
Confidence 4689999999988887666 6777888999888887655543
No 319
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=39.26 E-value=29 Score=23.13 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=20.8
Q ss_pred HHHhhhcCceEEEEEeeCC--hhhHHHHHHHhcCCCEE
Q 031202 88 DTLSRTKGAKVVAKVYWGD--PREKLCDAVEDLKLDTL 123 (164)
Q Consensus 88 ~~~~~~~~~~~~~~v~~g~--~~~~I~~~a~~~~~dli 123 (164)
.+.+.+.|..+-+....+. ..+.+++.+++++.+.+
T Consensus 76 ~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~ 113 (218)
T 3jr2_A 76 SRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQ 113 (218)
T ss_dssp HHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Confidence 3455556766655433332 24666777777777666
No 320
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=39.02 E-value=78 Score=21.30 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
...+..++++|+..|++..+++...... ..+.... .+...+.+..+.+.+++.|+.
T Consensus 83 ~~~~~~~i~~a~~lG~~~v~~~~g~~~~--------------~~~~~~~----------~~~~~~~l~~l~~~a~~~gv~ 138 (278)
T 1i60_A 83 ITEFKGMMETCKTLGVKYVVAVPLVTEQ--------------KIVKEEI----------KKSSVDVLTELSDIAEPYGVK 138 (278)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCBCSS--------------CCCHHHH----------HHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCC--------------CCCHHHH----------HHHHHHHHHHHHHHHHhcCCE
Confidence 4567778888888999887775321110 0000000 012345556666677777888
Q ss_pred EEEEEeeCC-----hhhHHHHHHHhcCC
Q 031202 98 VVAKVYWGD-----PREKLCDAVEDLKL 120 (164)
Q Consensus 98 ~~~~v~~g~-----~~~~I~~~a~~~~~ 120 (164)
+..+-..+. -.+.+.+.++..+.
T Consensus 139 l~lEn~~~~~~~~~~~~~~~~l~~~~~~ 166 (278)
T 1i60_A 139 IALEFVGHPQCTVNTFEQAYEIVNTVNR 166 (278)
T ss_dssp EEEECCCCTTBSSCSHHHHHHHHHHHCC
T ss_pred EEEEecCCccchhcCHHHHHHHHHHhCC
Confidence 776643322 34566666666543
No 321
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=38.95 E-value=93 Score=21.36 Aligned_cols=71 Identities=8% Similarity=0.099 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.+.+.+.|..+......+++.. ..++.....++|-||+......... .... .+....+||+++-.
T Consensus 19 ~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 91 (306)
T 2vk2_A 19 AETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWE-----PVLK-EAKDAEIPVFLLDR 91 (306)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHH-----HHHH-HHHHCCCCEEEecC
Confidence 4556677777778887765433345433 4556666778999998654322111 1122 34456799988854
No 322
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=38.87 E-value=51 Score=20.99 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=29.6
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
.+.++|.++.|..+...++ +++.|+..|+++.++.-..
T Consensus 79 ~~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 79 EGDLVIIGSGSGETKSLIH-TAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEESCT
T ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHHCCCEEEEEECCC
Confidence 4688999999988877666 6778898999887775543
No 323
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=38.80 E-value=75 Score=22.61 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=38.2
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCC---cccc-ceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGL---GALK-RVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~---~~~~-~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++-..-. .... .-++ .--..|+..++.||+++.-+
T Consensus 77 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~-~~f~~va~a~~lPiilYn~P 146 (309)
T 3fkr_A 77 RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIF-EFYARVSDAIAIPIMVQDAP 146 (309)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHH-HHHHHHHHHCSSCEEEEECG
T ss_pred CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHH-HHHHHHHHhcCCCEEEEeCC
Confidence 3555544433344444 45678899999999876433 1111 1111 23456778889999999754
No 324
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=38.76 E-value=92 Score=21.27 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......++. ...+++.....++|-||+...... ......+....+||+++-
T Consensus 27 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 27 YINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEEC
Confidence 3567777888888888877643222322 345777888889999998643211 112234566789999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 99 ~~ 100 (295)
T 3hcw_A 99 KP 100 (295)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 325
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=38.62 E-value=39 Score=24.71 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=44.7
Q ss_pred HHHhhhcCceEEEE-EeeCChhhHHHHHHHhcCCCEEEEeecCCcccc-ce----------eeccchhHHhcCCCccEEE
Q 031202 88 DTLSRTKGAKVVAK-VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALK-RV----------LLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 88 ~~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~-~~----------~~gs~~~~v~~~~~~pVli 155 (164)
-+.+.+.+.-+-.- +..-+...++++.|++.+..+|+-.+.+...+. .. .+...+..+.++.++||.+
T Consensus 13 l~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaL 92 (349)
T 3elf_A 13 LGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVAL 92 (349)
T ss_dssp HHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred HHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 33444555554443 333488999999999999998887664322110 00 1223456778889999977
Q ss_pred EeCC
Q 031202 156 VKGN 159 (164)
Q Consensus 156 v~~~ 159 (164)
-=+.
T Consensus 93 HlDH 96 (349)
T 3elf_A 93 HTDH 96 (349)
T ss_dssp EECC
T ss_pred ECCC
Confidence 5443
No 326
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=38.60 E-value=1.1e+02 Score=22.14 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 15 PNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..-+..++.|.+.|+..+....++...+.+
T Consensus 29 ~GHq~Li~~a~~~a~~~~~~~vvvtFdphP 58 (338)
T 2x0k_A 29 RGHQKLINATVEKAREVGAKAIMVTFDPHP 58 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEESSCH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecCCH
Confidence 456889999999999889988888876643
No 327
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=38.59 E-value=1e+02 Score=21.66 Aligned_cols=64 Identities=6% Similarity=0.130 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......+ +....+++.....++|-||+... -..+...++||+++-.
T Consensus 80 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~--------------~~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 80 SESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV--------------VGSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC--------------TTCCC-CCSCEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch--------------HHHHhhCCCCEEEECc
Confidence 4567777778888888777543333 12235666677788899888644 1123455788887754
No 328
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=38.48 E-value=59 Score=18.96 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
...+.+...+...|..+.. ...+. ++.++..+...+|++++...-.+...+. .....+-....+||+++-..
T Consensus 20 ~~~~~l~~~L~~~g~~v~~--~~~~~-~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 20 LAAATLRIQLESLGYDVLG--VFDNG-EEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHHHHTCEEEE--EESSH-HHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHHHHHCCCeeEE--EECCH-HHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 4455556666666765542 23443 4444556667799999985522111111 12333333356899888643
No 329
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=38.28 E-value=86 Score=21.45 Aligned_cols=49 Identities=18% Similarity=-0.071 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCCh-----------hhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDP-----------REKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~-----------~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
..+.+.+.+.+.+.|.+++..-...-+ ...+.+.+.+. |.||+++.-..
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~A--D~iI~~sP~Yn 110 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWS--EGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHC--SEEEEEEECSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHC--CEEEEEeCCCC
Confidence 456666666666678877754222222 45666667766 99999987554
No 330
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=38.25 E-value=76 Score=20.16 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHHHH----hhhcCceEEEEEeeCChhhHHHHHHHh---cCCCEEEEe
Q 031202 83 VLDILDTL----SRTKGAKVVAKVYWGDPREKLCDAVED---LKLDTLVVG 126 (164)
Q Consensus 83 ~~~~~~~~----~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliv~g 126 (164)
--..+.+. +.+.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 34455666 777788776554444434444444333 247999884
No 331
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=37.90 E-value=37 Score=23.24 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=33.3
Q ss_pred EeeCChh----hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 102 VYWGDPR----EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 102 v~~g~~~----~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
+..|+|. .++++.+.+.++|+|.+|-+........ + ...+.+ +..+.|+++.+-.
T Consensus 12 it~gDP~~~~t~~~~~~l~~~GaD~IelG~S~g~t~~~~-~-~~v~~i-r~~~~Pivl~~y~ 70 (234)
T 2f6u_A 12 ITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEKA-R-TLIEKV-SQYGLPIVVEPSD 70 (234)
T ss_dssp EEEECTTSCCCHHHHHHHHTTTCSEEEECCCTTCCHHHH-H-HHHHHH-TTSCCCEEECCSS
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHHH-H-HHHHHh-cCCCCCEEEecCC
Confidence 4455553 4678888999999999996321112211 1 233444 3367899887654
No 332
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=37.82 E-value=70 Score=19.61 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+...+...+..... ....+. ++.++.+++..+|+|++...-. ...+. .....+-...++|++++-.
T Consensus 36 ~~~~~l~~~L~~~~~~~~v-~~~~~~-~~al~~l~~~~~dlvilD~~l~-~~~g~---~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 36 FMRMVLKDIIDSQPDMKVV-GFAKDG-LEAVEKAIELKPDVITMDIEMP-NLNGI---EALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp HHHHHHHHHHHTSTTEEEE-EEESSH-HHHHHHHHHHCCSEEEECSSCS-SSCHH---HHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHHHHhcCCCeEEE-EecCCH-HHHHHHhccCCCCEEEEeCCCC-CCCHH---HHHHHHHhcCCceEEEEec
Confidence 4455566666655422211 123444 4444556667899999975421 11111 2344555555688888754
No 333
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=37.68 E-value=58 Score=20.74 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh---cCCCEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED---LKLDTLVVG 126 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliv~g 126 (164)
+.-...+...+++.|.++.......|- +.|.+..++ .++|+||..
T Consensus 26 Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 26 DRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred eHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 344556677777788877654334433 555555433 468999884
No 334
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=37.57 E-value=64 Score=22.57 Aligned_cols=63 Identities=5% Similarity=-0.154 Sum_probs=36.1
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccc-cceeeccchhHHhcCCCccEEEEeCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGAL-KRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~-~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++........ .+--+-.--..|+. +.||+++.-+
T Consensus 62 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~--~lPiilYn~P 127 (283)
T 2pcq_A 62 RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAE--KMPLFLYHVP 127 (283)
T ss_dssp SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH--HSCEEEEECH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc--CCCEEEEeCc
Confidence 4555544444455554 46778999999998876544322 11101112234555 8999998643
No 335
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=37.56 E-value=51 Score=20.85 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=30.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.+++.++.+..+...++ +++.|+..|+++.++.-...
T Consensus 82 ~~d~vi~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLT-VAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp TTCEEEEEESSSCCHHHHH-HHHHHHTTCSCEEEEESSCC
T ss_pred CCCEEEEEeCCCCcHHHHH-HHHHHHHCCCcEEEEeCCCC
Confidence 4688999999988877665 66788889998877765443
No 336
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=37.50 E-value=24 Score=25.46 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=35.3
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|...+.+.|..+-.. +..|+......+....+ +|.||+.+... ...+.+.+++.+||+
T Consensus 64 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 127 (321)
T 1oth_A 64 TETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSM-ADAVLARVYKQ---------SDLDTLAKEASIPII 127 (321)
T ss_dssp HHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHHCSSCEE
T ss_pred HHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHh-CCEEEEeCCCh---------hHHHHHHHhCCCCEE
Confidence 333444455554432 22344555666666666 79999976532 235667888999986
No 337
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=37.32 E-value=61 Score=18.77 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh-------cCCCEEEEeecCCccccceeeccchhHHhcC---CC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED-------LKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SS 150 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~-------~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~ 150 (164)
....+.+...+...|..+.+ ....+..+. ++..++ ..+|++++...-. ...+. ...+.+-.. ..
T Consensus 12 ~~~~~~l~~~L~~~~~~~~v-~~~~~~~~a-~~~l~~~~~~~~~~~~dlvi~d~~~~-~~~g~---~~~~~l~~~~~~~~ 85 (140)
T 1k68_A 12 KADIRLIQEALANSTVPHEV-VTVRDGMEA-MAYLRQEGEYANASRPDLILLXLNLP-KKDGR---EVLAEIKSDPTLKR 85 (140)
T ss_dssp HHHHHHHHHHHHTCSSCCEE-EEECSHHHH-HHHHTTCGGGGSCCCCSEEEECSSCS-SSCHH---HHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHhcCCCceE-EEECCHHHH-HHHHHcccccccCCCCcEEEEecCCC-cccHH---HHHHHHHcCccccc
Confidence 34556666777777764332 223444444 444554 7899999975422 11111 234444444 35
Q ss_pred ccEEEEeCC
Q 031202 151 CPVTVVKGN 159 (164)
Q Consensus 151 ~pVliv~~~ 159 (164)
+|++++-..
T Consensus 86 ~pii~ls~~ 94 (140)
T 1k68_A 86 IPVVVLSTS 94 (140)
T ss_dssp SCEEEEESC
T ss_pred ccEEEEecC
Confidence 889888643
No 338
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=37.16 E-value=26 Score=25.21 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHhhhcCceEEEEE------eeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 87 LDTLSRTKGAKVVAKV------YWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v------~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|...+.+.|-.+-..- ..|+......+....+ +|.||+.+... ...+.+.+++.+||+=
T Consensus 64 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVIN 128 (315)
T 1pvv_A 64 FEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRY-VDAIMARVYDH---------KDVEDLAKYATVPVIN 128 (315)
T ss_dssp HHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEEE
T ss_pred HHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHh-CcEEEEecCch---------HHHHHHHHhCCCCEEc
Confidence 3334444565544321 1244555555666666 79999976532 2466788889999873
No 339
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=37.03 E-value=1.1e+02 Score=21.54 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.....+.+.+.+.+.|..+......+++. ..+++.....++|-||+....... ..-..+...++||+++
T Consensus 83 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 83 FPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--------HHHHHHHhCCCCEEEE
Confidence 35677788888888888876543334443 345666777889999986432211 1223456678999988
No 340
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=36.75 E-value=89 Score=20.90 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=35.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|.++......++. ....++.....++|-||+....... ... ..+...++||+++..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~-~~~~~~~iPvV~~~~ 86 (276)
T 2h0a_A 15 RRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-------RFE-EGRLPTERPVVLVDA 86 (276)
T ss_dssp HHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC--------------CCSCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-------HHH-HHHhhcCCCEEEEec
Confidence 456777778888888776643222333 2345666667789998886432221 111 234556789888754
No 341
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=36.73 E-value=52 Score=24.17 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=36.8
Q ss_pred HHHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 86 ILDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
-|...+.+.|..+... +..|+......+....+ +|.||+.+... ...+.+++++.+|||=
T Consensus 84 SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~lA~~s~vPVIN 149 (359)
T 2w37_A 84 AFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSM-FDGIEFRGFKQ---------SDAEILARDSGVPVWN 149 (359)
T ss_dssp HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHH-CSEEEEESSCH---------HHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHh-cCEEEEecCCh---------HHHHHHHHhCCCCEEc
Confidence 3444455556665543 12244555555666666 79999975532 3467788889999873
No 342
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=36.73 E-value=64 Score=18.90 Aligned_cols=69 Identities=4% Similarity=0.030 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+...+... +.+ ....+. ++.++.+++..+|+|++...- ....+ -.....+-.. ..+||+++-.
T Consensus 14 ~~~~~l~~~l~~~---~~v-~~~~~~-~~a~~~~~~~~~dlvi~D~~l-~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 14 FSRIELKNFLDSE---YLV-IESKNE-KEALEQIDHHHPDLVILDMDI-IGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHHHHHHHHHTTT---SEE-EEESSH-HHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred HHHHHHHHHHHhc---ceE-EEeCCH-HHHHHHHhcCCCCEEEEeCCC-CCCcH---HHHHHHHHcCcccCCCCEEEEec
Confidence 3444555555444 232 123444 444556677789999998542 11111 1234455444 4589988865
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 85 ~ 85 (140)
T 3n53_A 85 S 85 (140)
T ss_dssp C
T ss_pred C
Confidence 3
No 343
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=36.65 E-value=62 Score=18.64 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=39.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGNP 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~~ 160 (164)
...+.+...+...|..+.. ..+. ++..+..+...+|+|++...-.. ..+ -.....+-... .+|++++-...
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~~~-~~a~~~l~~~~~dlvi~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTVL---AADG-VDALELLGGFTPDLMICDIAMPR-MNG---LKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESCH-HHHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHHHHHHHhCCceEEE---eCCH-HHHHHHHhcCCCCEEEEecCCCC-CCH---HHHHHHHHhcCCCCCEEEEEcCC
Confidence 4455666666677766542 3443 44556667888999999754211 111 12334444333 48998886543
No 344
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=36.62 E-value=65 Score=18.90 Aligned_cols=73 Identities=4% Similarity=0.024 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh------cCCCEEEEeecCCccccceeeccchhHHhcC---CCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED------LKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSC 151 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~------~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~ 151 (164)
....+.+...+...|....+ ....+.. +.++..++ ..+|+|++...-. ...+. ...+.+-.. ..+
T Consensus 17 ~~~~~~l~~~L~~~g~~~~v-~~~~~~~-~a~~~l~~~~~~~~~~~dlii~D~~l~-~~~g~---~~~~~l~~~~~~~~~ 90 (143)
T 2qvg_A 17 EVDIQSVERVFHKISSLIKI-EIAKSGN-QALDMLYGRNKENKIHPKLILLDINIP-KMNGI---EFLKELRDDSSFTDI 90 (143)
T ss_dssp HHHHHHHHHHHHHHCTTCCE-EEESSHH-HHHHHHHTCTTCCCCCCSEEEEETTCT-TSCHH---HHHHHHTTSGGGTTC
T ss_pred HHHHHHHHHHHHHhCCCceE-EEECCHH-HHHHHHHhcccccCCCCCEEEEecCCC-CCCHH---HHHHHHHcCccccCC
Confidence 34455666666666662222 1234444 44445554 6789999985422 11111 223444333 458
Q ss_pred cEEEEeCC
Q 031202 152 PVTVVKGN 159 (164)
Q Consensus 152 pVliv~~~ 159 (164)
|++++-..
T Consensus 91 ~ii~ls~~ 98 (143)
T 2qvg_A 91 EVFVLTAA 98 (143)
T ss_dssp EEEEEESC
T ss_pred cEEEEeCC
Confidence 88887543
No 345
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=36.61 E-value=60 Score=22.21 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCChhhHHHHHHHH-HHhccCCCeEEEEE
Q 031202 2 SKARTVGVGMDNSPNSKAALRWAA-DNLIDSGDLIILIH 39 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~-~la~~~~~~l~ll~ 39 (164)
++++.|+|.-.++...+..+..++ +..++.|.++..+-
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 456777777776666665554433 33444666666653
No 346
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=36.60 E-value=86 Score=22.89 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+-+.+.+.+.|..+.... .+-....++.....++|-||+... .......+...++||+++-.
T Consensus 40 ~~l~~gi~~~a~~~g~~~~i~~--~~~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 40 RQVVEGVGEYLQASQSEWDIFI--EEDFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEE--CC-CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEe--cCCccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEecC
Confidence 4667777788888887776543 222344567777888999998311 11123456677899998854
No 347
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=36.59 E-value=1e+02 Score=21.08 Aligned_cols=68 Identities=7% Similarity=0.146 Sum_probs=45.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
...+.+.+.+.+.|..+......++. ...+++.....++|-||+....... .-..+....+||+++-.
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---------~~~~~~~~~iPvV~~~~ 100 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---------VDPESGDVSIPTVMINC 100 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---------CCCCCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---------HHHHHHhCCCCEEEECC
Confidence 77788888888889888764444444 3456777788899999986542211 11234566789888853
No 348
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=36.46 E-value=95 Score=20.78 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
....+.+...+...+..+. ...+.. +.++.+....+|+|++...- ....++ .....+-...++||+++-..
T Consensus 47 ~~~~~~l~~~L~~~g~~v~---~~~~~~-~al~~~~~~~~DlvllD~~l-p~~~G~---~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 47 HDIANVLRMDLTDAGYVVD---HADSAM-NGLIKAREDHPDLILLDLGL-PDFDGG---DVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHHHHHHTTTCEEE---EESSHH-HHHHHHHHSCCSEEEEECCS-CHHHHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEE---EeCCHH-HHHHHHhcCCCCEEEEcCCC-CCCCHH---HHHHHHHcCCCCCEEEEECC
Confidence 3455566666666665332 234444 44556677789999997542 211111 23445555556999998654
No 349
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=36.42 E-value=44 Score=22.70 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe-ec
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG-SR 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g-~~ 128 (164)
..+++++...+.|.++...+ .|.+..+-+..+.+.++|.+|+| +.
T Consensus 153 kI~~lr~~~~~~~~~~~I~V-dGGI~~~~~~~~~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 153 KLAELKAWREREGLEYEIEV-DGSCNQATYEKLMAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHHHTCCCEEEE-ESCCSTTTHHHHHHHTCCEEEECTTT
T ss_pred HHHHHHHHHhccCCCceEEE-ECCcCHHHHHHHHHcCCCEEEEccHH
Confidence 34455566655566655444 44444444555566789999999 54
No 350
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=36.35 E-value=64 Score=18.78 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc----cccceeeccchhHHhcC-CCccEEEE
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG----ALKRVLLGSVSNHVVTN-SSCPVTVV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~----~~~~~~~gs~~~~v~~~-~~~pVliv 156 (164)
...+.+...+...|..+.. ..+ .++.++..++..+|++++...-.. ...+. .....+-.. ..+||+++
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~l 86 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVIT---LSS-PVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLF 86 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEE---ECC-HHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHhCCcEEEE---eCC-HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEE
Confidence 4455666666666765442 334 345556667778999999854220 11111 123333333 35888887
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 87 s~ 88 (140)
T 2qr3_A 87 TA 88 (140)
T ss_dssp EE
T ss_pred EC
Confidence 53
No 351
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=36.22 E-value=1e+02 Score=21.10 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......++. ...+++.....++|-||+...... ...-..+....+||+++-
T Consensus 42 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 42 NSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD--------DPIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT--------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC--------cHHHHHHHHcCCCEEEEC
Confidence 3466777778888888877653222332 356777788889999998643221 112234556789999886
Q ss_pred CCC
Q 031202 158 GNP 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 114 ~~~ 116 (305)
T 3huu_A 114 KSL 116 (305)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 352
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=36.15 E-value=89 Score=22.32 Aligned_cols=66 Identities=18% Similarity=0.065 Sum_probs=38.5
Q ss_pred CceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCc--cc-cceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 95 GAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLG--AL-KRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~--~~-~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
.+.+-.-+...+..+. +.+.+++.++|-+++-....- +. ..-++ .--..|+..++.||+++.-+.+
T Consensus 80 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~-~~f~~ia~a~~lPiilYn~P~~ 150 (318)
T 3qfe_A 80 DFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIK-SFFDDVSCQSPLPVVIYNFPGV 150 (318)
T ss_dssp TSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHH-HHHHHHHHHCSSCEEEEECCC-
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHH-HHHHHHHhhCCCCEEEEeCCcc
Confidence 3555544433354443 456788999999888765321 11 11111 2345677788999999976543
No 353
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=36.09 E-value=56 Score=22.33 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEeec
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVGSR 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g~~ 128 (164)
++++++...+.+.++...+ .|....+-+..+.+ .++|.+|+|+.
T Consensus 174 i~~lr~~~~~~~~~~~I~v-dGGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 174 VIQVEKRLGNRRVEKLINI-DGSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHGGGGGGCEEEE-ESSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHhcCCCceEEE-ECCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 3445555555555555434 45444555555667 88999999965
No 354
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=35.99 E-value=1.1e+02 Score=21.17 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=26.0
Q ss_pred CcEEEEEecCChhh-HHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNS-KAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s-~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.|.|++.+||.+.+ ...+ .|+++|+..|.+|+.+-+...
T Consensus 10 ~k~iillTDG~~~~g~~p~-~aa~~a~~~gi~v~tIGig~~ 49 (242)
T 3rag_A 10 IRQILVITDGCSNIGPDPV-EAARRAHRHGIVVNVIGIVGR 49 (242)
T ss_dssp EEEEEEEESSCCCSSSCHH-HHHHHHHHTTCEEEEEEECCS
T ss_pred ccEEEEEccCCCCCCCCHH-HHHHHHHHCCCEEEEEEecCC
Confidence 45677777886432 2233 345678888999999998543
No 355
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=35.98 E-value=71 Score=19.14 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+ .++.++..+...+|+|++...-.. ..+. .....+-.. ..+||+++-.
T Consensus 18 ~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNII---TFTS-PLDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHHHHHTTTCEEE---EESC-HHHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCeEE---EeCC-HHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 445556666666676544 2344 345556667778999999864221 1111 223344333 3588888754
No 356
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=35.96 E-value=1e+02 Score=20.87 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......++.. ...++.....++|-||+.......... ....-.-+...++||+++-
T Consensus 30 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 30 FPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP---NIGYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT---THHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC---cHHHHHHHHhcCCCEEEEe
Confidence 45677788888888898887654444543 446666778899999996543221100 0011223456689999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 107 ~~ 108 (298)
T 3tb6_A 107 AS 108 (298)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 357
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=35.92 E-value=88 Score=20.21 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHh--hhcCceEEEEEeeCChhhHHHHHHHh---cCCCEEEEeecCCccccceeeccc-hhHHhcCCCc
Q 031202 78 TSNPEVLDILDTLS--RTKGAKVVAKVYWGDPREKLCDAVED---LKLDTLVVGSRGLGALKRVLLGSV-SNHVVTNSSC 151 (164)
Q Consensus 78 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliv~g~~~~~~~~~~~~gs~-~~~v~~~~~~ 151 (164)
...+++.+.+.+.+ .+.|+++++. ..+-..+|++.+.+ .++|-|||..-..+.. |+ ....+...++
T Consensus 39 ~TL~di~~~l~~~a~~~~~g~~v~~~--QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHt------SvAlrDAL~~v~~ 110 (167)
T 3kip_A 39 TSLSDIEQAAIEQAKLKNNDSEVLVF--QSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHT------SVGIRDALLGTAI 110 (167)
T ss_dssp CCHHHHHHHHHHHHHHTCSSCEEEEE--ECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGT------CHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhccccCCcEEEEE--ecCCHHHHHHHHHHhhhcCccEEEEccccceec------cHHHHHHHHhcCC
Confidence 44567777888888 6778887754 33334444443332 4589999976544322 21 2334566788
Q ss_pred cEEEEe
Q 031202 152 PVTVVK 157 (164)
Q Consensus 152 pVliv~ 157 (164)
|++=|.
T Consensus 111 P~VEVH 116 (167)
T 3kip_A 111 PFIEVH 116 (167)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 988775
No 358
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=35.49 E-value=1.3e+02 Score=21.89 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee-C----Ch---------hhHHHHHHHh-----cCCCEEEEeecCCcccc-ceeec-
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW-G----DP---------REKLCDAVED-----LKLDTLVVGSRGLGALK-RVLLG- 139 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~-g----~~---------~~~I~~~a~~-----~~~dliv~g~~~~~~~~-~~~~g- 139 (164)
.+.+.++.+.|++.|+++-.++.. + +. .+.|.+.++. .++|++=+.-.+...+. ++--|
T Consensus 146 ~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~ 225 (332)
T 3iv3_A 146 QAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGE 225 (332)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSC
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhccccccc
Confidence 467888888999999998776533 2 11 2225555554 49999988654432211 11000
Q ss_pred ---------cchhHHhcCCCccEEEEeCC
Q 031202 140 ---------SVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 140 ---------s~~~~v~~~~~~pVliv~~~ 159 (164)
..-..+...+++|++++-..
T Consensus 226 ~~y~~~ea~~~f~~~~~a~~~P~v~lsgG 254 (332)
T 3iv3_A 226 VVYSKEEAAQAFREQEASTDLPYIYLSAG 254 (332)
T ss_dssp CCBCHHHHHHHHHHHHHTCSSCEEEECTT
T ss_pred ccccHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 01345678899999887543
No 359
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=35.48 E-value=59 Score=19.07 Aligned_cols=72 Identities=7% Similarity=0.038 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhhh-cCceEEEEEeeCChhhHHHHHHHh-cCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEE
Q 031202 81 PEVLDILDTLSRT-KGAKVVAKVYWGDPREKLCDAVED-LKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTV 155 (164)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~g~~~~~I~~~a~~-~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVli 155 (164)
......+...+.. .|.++. ...+. ++.++..++ ..+|+|++...-.+...++ .....+-. ...+||++
T Consensus 14 ~~~~~~l~~~L~~~~~~~v~---~~~~~-~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ 86 (140)
T 3lua_A 14 EYEREKTKIIFDNIGEYDFI---EVENL-KKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVII 86 (140)
T ss_dssp HHHHHHHHHHHHHHCCCEEE---EECSH-HHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEE
T ss_pred HHHHHHHHHHHHhccCccEE---EECCH-HHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEE
Confidence 3445566666666 676554 23443 444556666 8899999975522011111 12333333 34588888
Q ss_pred EeCC
Q 031202 156 VKGN 159 (164)
Q Consensus 156 v~~~ 159 (164)
+-..
T Consensus 87 ls~~ 90 (140)
T 3lua_A 87 ATKS 90 (140)
T ss_dssp EESC
T ss_pred EeCC
Confidence 8643
No 360
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=35.37 E-value=1.3e+02 Score=21.99 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
-+.++++|..+ +..++++.-++...++..... ..| ...+-+..+.+.+++.|+
T Consensus 119 ~e~a~~~a~~~-k~aGa~~vr~q~fKprTs~~~-----f~g---------------------lg~egl~~l~~~~~e~Gl 171 (350)
T 1vr6_A 119 REMLMETAHFL-SELGVKVLRGGAYKPRTSPYS-----FQG---------------------LGEKGLEYLREAADKYGM 171 (350)
T ss_dssp HHHHHHHHHHH-HHTTCCEEECBSCCCCCSTTS-----CCC---------------------CTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-HHcCCCeeeeeEEeCCCChHh-----hcC---------------------CCHHHHHHHHHHHHHcCC
Confidence 44556655554 457787766676666542210 011 113667888888999999
Q ss_pred eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 97 KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 97 ~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.+-+.+..-.-.+.+. +. +|++=||++.-..+. ...++. ..++||++=+..
T Consensus 172 ~~~te~~d~~~~~~l~----~~-vd~lkIgAr~~~n~~------LL~~va-~~~kPVilk~G~ 222 (350)
T 1vr6_A 172 YVVTEALGEDDLPKVA----EY-ADIIQIGARNAQNFR------LLSKAG-SYNKPVLLKRGF 222 (350)
T ss_dssp EEEEECSSGGGHHHHH----HH-CSEEEECGGGTTCHH------HHHHHH-TTCSCEEEECCT
T ss_pred cEEEEeCCHHHHHHHH----Hh-CCEEEECcccccCHH------HHHHHH-ccCCcEEEcCCC
Confidence 9998765544444443 33 699999987544321 233344 457777765443
No 361
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=35.36 E-value=85 Score=19.88 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHH---hcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVE---DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~---~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
...+++.+.+++.+.+.|+++++. ..+-..+|++... ..++|-||+..-..+... --....+...++|++
T Consensus 24 ~tl~di~~~l~~~a~~~g~~v~~~--QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtS-----vAlrDAl~~v~~P~V 96 (149)
T 2uyg_A 24 TTLEELEALCEAWGAELGLGVVFR--QTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYS-----YALLDAIRAQPLPVV 96 (149)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEE--ECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTC-----HHHHHHHHTSCSCEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEE--eeCCHHHHHHHHHHhccCCeeEEEEccchhcccc-----HHHHHHHHhCCCCEE
Confidence 345678888888888899988864 3333444444433 333799999765433221 123456777789998
Q ss_pred EEe
Q 031202 155 VVK 157 (164)
Q Consensus 155 iv~ 157 (164)
=|+
T Consensus 97 EVH 99 (149)
T 2uyg_A 97 EVH 99 (149)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 362
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=35.30 E-value=34 Score=23.12 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=30.1
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-.
T Consensus 108 ~~Dv~I~iS~SG~t~~~i~-~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 108 NKDVIMIISNSGRNTVPVE-MAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp TTCEEEEECSSCCSHHHHH-HHHHHHHHTCEEEEEECH
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 4689999999998888776 567789899988877654
No 363
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.26 E-value=69 Score=18.81 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh----------cCCCEEEEeecCCccccceeeccchhHHhcC--
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED----------LKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-- 148 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~----------~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-- 148 (164)
......+...+...|..+.+ ....+..+++ +..+. ..+|++++...-. ...+. .....+-..
T Consensus 16 ~~~~~~l~~~L~~~g~~~~v-~~~~~~~~al-~~l~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~ 89 (149)
T 1k66_A 16 DEDFSTFQRLLQREGVVNPI-YRCITGDQAL-DFLYQTGSYCNPDIAPRPAVILLDLNLP-GTDGR---EVLQEIKQDEV 89 (149)
T ss_dssp HHHHHHHHHHHHHTTBCSCE-EEECSHHHHH-HHHHTCCSSSCGGGCCCCSEEEECSCCS-SSCHH---HHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHcCCCceE-EEECCHHHHH-HHHHhcccccCcccCCCCcEEEEECCCC-CCCHH---HHHHHHHhCcc
Confidence 34555666666666763222 1234444444 44444 7889999975421 11111 233444443
Q ss_pred -CCccEEEEeCC
Q 031202 149 -SSCPVTVVKGN 159 (164)
Q Consensus 149 -~~~pVliv~~~ 159 (164)
..+|++++-..
T Consensus 90 ~~~~~ii~~t~~ 101 (149)
T 1k66_A 90 LKKIPVVIMTTS 101 (149)
T ss_dssp GGGSCEEEEESC
T ss_pred cCCCeEEEEeCC
Confidence 35888888643
No 364
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=35.22 E-value=1.3e+02 Score=21.93 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCcc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGA 132 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~ 132 (164)
+++.+.+.+.+...|.+++..-........+.+...+ +|.||+|+.-..+
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~--~D~iiigsP~y~~ 320 (414)
T 2q9u_A 271 HRMALALLDGARSTGCETVLLEMTSSDITKVALHTYD--SGAVAFASPTLNN 320 (414)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHT--CSEEEEECCCBTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHh--CCEEEEEcCccCc
Confidence 4566666666666777776543333223444444544 4999999875543
No 365
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=35.13 E-value=86 Score=19.88 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
.+.++..+++.|++++.... +...++...+..++|+++-+
T Consensus 29 ~dl~~~~~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 68 (226)
T 1wdn_A 29 VDLWAAIAKELKLDYELKPM---DFSGIIPALQTKNVDLALAG 68 (226)
T ss_dssp HHHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHhCCEEEEEEC---CHHHHHHHHhCCCCCEEEEc
Confidence 44555556666888887543 46778888899999998755
No 366
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=35.12 E-value=1e+02 Score=20.69 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhcCceE-EEE-EeeC------ChhhHHHHHHHhcCCCEEEEeec
Q 031202 83 VLDILDTLSRTKGAKV-VAK-VYWG------DPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~-v~~g------~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..+++.+.+...|++. ... ...+ +..+.|.+..++.++|+|+....
T Consensus 51 R~~E~~~A~~~lG~~~~~~l~~~D~~l~~~~~~~~~l~~~ir~~~P~~V~t~~~ 104 (227)
T 1uan_A 51 REKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLE 104 (227)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEECTTCCCCCHHHHHHHHHHHHHHCEEEEEEECS
T ss_pred HHHHHHHHHHhcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 3445555666667653 211 1111 35678888999999999987543
No 367
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=35.11 E-value=36 Score=22.24 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=30.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+..|+++.++.-...
T Consensus 89 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 89 DQDVLVGISGSGETTSVVN-ISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHHTCEEEEEESCTT
T ss_pred CCCEEEEEeCCCCcHHHHH-HHHHHHHCCCeEEEEECCCC
Confidence 4689999999988887766 56778888998887765443
No 368
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=34.93 E-value=56 Score=23.12 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCCCcEEEEEecCChh-hHHHHHHHHHHhccCCCeEEEE
Q 031202 1 MSKARTVGVGMDNSPN-SKAALRWAADNLIDSGDLIILI 38 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~-s~~al~~a~~la~~~~~~l~ll 38 (164)
|++|++|++....... ....++......+..+..+.+.
T Consensus 1 m~~m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~ 39 (307)
T 1u0t_A 1 MTAHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVL 39 (307)
T ss_dssp ----CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 7778999999986543 4455666666666677766543
No 369
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=34.86 E-value=40 Score=22.23 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=30.3
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-...
T Consensus 131 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~G~~vIaIT~~~~ 169 (212)
T 2i2w_A 131 EGDVLLGISTSGNSANVIK-AIAAAREKGMKVITLTGKDG 169 (212)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHHTCEEEEEEETTC
T ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHCCCeEEEEECCCC
Confidence 4688999999988877666 66778888998887766543
No 370
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=34.84 E-value=1.2e+02 Score=22.21 Aligned_cols=36 Identities=17% Similarity=0.024 Sum_probs=22.2
Q ss_pred CCEEEEeecCCcc-ccceeeccchhHHhcCCCccEEE
Q 031202 120 LDTLVVGSRGLGA-LKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 120 ~dliv~g~~~~~~-~~~~~~gs~~~~v~~~~~~pVli 155 (164)
+|.||+...+... +..-.-....+.+.+++++||+=
T Consensus 126 ~D~iviR~~~~~~~~~~~~~~~~~~~~a~~~~vPVIN 162 (359)
T 3kzn_A 126 VDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN 162 (359)
T ss_dssp CSEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEE
T ss_pred CcEEEEEccccccchhcchhhHHHHHHHHhCCCcccC
Confidence 6999997654321 11111234577788999999874
No 371
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=34.80 E-value=88 Score=26.92 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
|+++++|||+ +..+ .+++ .++-++..|.++.+++.....
T Consensus 1 M~~~kkVLIa-grGe---ia~r-iiraa~elGi~vVav~s~~d~ 39 (1150)
T 3hbl_A 1 MKQIKKLLVA-NRGE---IAIR-IFRAAAELDISTVAIYSNEDK 39 (1150)
T ss_dssp --CCCEEEEC-CCHH---HHHH-HHHHHHHTTCEEEEEECGGGT
T ss_pred CCCCCEEEEE-CCCH---HHHH-HHHHHHHCCCEEEEEEcCCcc
Confidence 7889999994 3333 2333 344456678888877654443
No 372
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=34.76 E-value=1.1e+02 Score=20.85 Aligned_cols=69 Identities=9% Similarity=0.138 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCCh-hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDP-REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~-~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++. ....++.....++|-||+....... .... .+.. .+||+++-.
T Consensus 27 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 27 GDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-------DELG-ALAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-------HHHH-HHHT-TSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-------HHHH-HHHc-CCCEEEEcC
Confidence 456666777777777766654333321 4445555566777887776432221 1122 2334 778877754
No 373
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=34.72 E-value=70 Score=18.75 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+.. +.++...+..+|+|++...- ....++ .....+-. ...+||+++-.
T Consensus 15 ~~~~~l~~~L~~~g~~v~---~~~~~~-~al~~~~~~~~dlvl~D~~l-p~~~g~---~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVR---RAASGE-EALQQIYKNLPDALICDVLL-PGIDGY---TLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSHH-HHHHHHHHSCCSEEEEESCC-SSSCHH---HHHHHHHHSGGGTTCCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEE---EeCCHH-HHHHHHHhCCCCEEEEeCCC-CCCCHH---HHHHHHHcCCCcCCccEEEEec
Confidence 445556666666676543 234444 44556677889999997542 221111 12333332 23578888865
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 87 ~ 87 (136)
T 3t6k_A 87 Q 87 (136)
T ss_dssp T
T ss_pred C
Confidence 3
No 374
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=34.50 E-value=56 Score=22.41 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=26.2
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+.|++.+||.+.+...+..++..++..+..|+.+.+-..
T Consensus 127 ~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~ 165 (266)
T 4hqo_A 127 QLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQG 165 (266)
T ss_dssp EEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSS
T ss_pred eEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcc
Confidence 456677788766544455566667778888888777653
No 375
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=34.42 E-value=69 Score=18.93 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhhcC-ceEEEEEeeCChhhHHHHHHHh-cCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEe
Q 031202 81 PEVLDILDTLSRTKG-AKVVAKVYWGDPREKLCDAVED-LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~v~~g~~~~~I~~~a~~-~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~ 157 (164)
....+.+...+...| ..+.. ..+..+++....+. ..+|+|++...- ....++ .....+-... .+||+++-
T Consensus 30 ~~~~~~l~~~L~~~g~~~v~~---~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~---~~~~~l~~~~~~~~ii~lt 102 (146)
T 4dad_A 30 ASRLAHLARLVGDAGRYRVTR---TVGRAAQIVQRTDGLDAFDILMIDGAA-LDTAEL---AAIEKLSRLHPGLTCLLVT 102 (146)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE---ECCCHHHHTTCHHHHTTCSEEEEECTT-CCHHHH---HHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHhhCCCeEEEE---eCCHHHHHHHHHhcCCCCCEEEEeCCC-CCccHH---HHHHHHHHhCCCCcEEEEe
Confidence 345556666666666 65543 44556666666666 889999998652 211111 2233333333 48888876
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 103 ~~ 104 (146)
T 4dad_A 103 TD 104 (146)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 376
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=34.30 E-value=1.3e+02 Score=21.61 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=26.6
Q ss_pred EEEEEecC-----ChhhHHHHHHHHHHhccCC-CeEEEEEEeCC
Q 031202 6 TVGVGMDN-----SPNSKAALRWAADNLIDSG-DLIILIHVQPP 43 (164)
Q Consensus 6 ~ILv~~d~-----s~~s~~al~~a~~la~~~~-~~l~ll~v~~~ 43 (164)
.|||..+. ++.+..++..|.+|+. .+ .+++++.+-+.
T Consensus 2 ~ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~G~~ 44 (320)
T 1o97_D 2 KILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVIGSQ 44 (320)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEESTT
T ss_pred eEEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEECCc
Confidence 35665542 4668899999999987 66 58888877643
No 377
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=33.99 E-value=92 Score=19.85 Aligned_cols=73 Identities=11% Similarity=0.161 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
...+++.+.+.+.+.+.|+++++. ..+-..+|++...+ .++|-||+..-..+... --....+....+|++=
T Consensus 26 ~Tl~di~~~l~~~a~~~g~~l~~~--QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtS-----vAlrDAl~~v~~P~VE 98 (154)
T 1uqr_A 26 QTLSDIEQHLQQSAQAQGYELDYF--QANGEESLINRIHQAFQNTDFIIINPGAFTHTS-----VAIRDALLAVSIPFIE 98 (154)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEE--ECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHC-----HHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEE--eeCCHHHHHHHHHHhhhcCcEEEECcchhccch-----HHHHHHHHhCCCCEEE
Confidence 446778888888888999988854 43334444444433 25799999765433211 1133455556788887
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 99 VH 100 (154)
T 1uqr_A 99 VH 100 (154)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 378
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=33.91 E-value=34 Score=25.22 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=38.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
.-.+.+.+.+++.++|-||.-.........+ ......+.++...+|++.+--+
T Consensus 300 ~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~-~~~~~~~~~~~~giP~l~ie~D 352 (385)
T 3o3m_B 300 KRGSLIVDEVKKKDIDGVIFCMMKFCDPEEY-DYPLVRKDIEDSGIPTLYVEID 352 (385)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEETTCHHHHH-HHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCccHh-hHHHHHHHHHHCCCCEEEEEec
Confidence 5688899999999999999977655543322 2334556668889999998643
No 379
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=33.78 E-value=73 Score=18.66 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+. .+.++..+...+|++++...- ....++ .....+-.. ..+||+++-.
T Consensus 14 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~dlvi~D~~l-~~~~g~---~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPI---TAFSG-EECLEALNATPPDLVLLDIMM-EPMDGW---ETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHSCCSEEEEESCC-SSSCHH---HHHHHHHHSTTTTTSCEEEEES
T ss_pred HHHHHHHHHHHHcCceEE---EeCCH-HHHHHHHhccCCCEEEEeCCC-CCCCHH---HHHHHHHcCcccCCCCEEEEEC
Confidence 344555556666676544 23444 344456677789999997542 111111 223444332 3588988854
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 86 ~ 86 (138)
T 3c3m_A 86 K 86 (138)
T ss_dssp S
T ss_pred C
Confidence 3
No 380
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=33.62 E-value=1.1e+02 Score=20.67 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......+++.. ..++.....++|-||+......... .... -+....+||+++-.
T Consensus 17 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 17 VTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV-----TAIK-EANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH-----HHHH-HHHHCCCeEEEecC
Confidence 35666777777778887765433345543 3455556788999998643221111 1122 34556799988854
No 381
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=33.54 E-value=93 Score=19.81 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+...+...|..+.. ...+..+ .++.++...+|+|++...- ....++ .....+-...+.||+++-
T Consensus 24 ~~~~~l~~~L~~~g~~v~~--~~~~~~~-al~~~~~~~~dlvi~D~~~-p~~~g~---~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 24 LIRMDLAEMLREEGYEIVG--EAGDGQE-AVELAELHKPDLVIMDVKM-PRRDGI---DAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHHHHHHHHHTTCEEEE--EESSHHH-HHHHHHHHCCSEEEEESSC-SSSCHH---HHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEE--EeCCHHH-HHHHHhhcCCCEEEEeCCC-CCCChH---HHHHHHHhcCCCCEEEEe
Confidence 4455556666666765432 2344333 4455666789999997542 111111 234555555567888874
No 382
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=33.12 E-value=96 Score=19.81 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=46.6
Q ss_pred CCCChhHHHHHHHHhhhcCceEEEEEe--eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC-ccE
Q 031202 77 LTSNPEVLDILDTLSRTKGAKVVAKVY--WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS-CPV 153 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~-~pV 153 (164)
....+++.+.+.+.+.+.|+++++..- +|...+.|-+... ++|-||+..-..+... --....+.... +|+
T Consensus 30 ~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~--~~dgiIINpgA~THtS-----vAlrDAl~~v~~~P~ 102 (156)
T 1gtz_A 30 SDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARL--NHCGIVINPAAYSHTS-----VAILDALNTCDGLPV 102 (156)
T ss_dssp SCCHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHH--HCSEEEEECTTHHHHC-----HHHHHHHHTSTTCCE
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh--cCcEEEECchhhcccc-----HHHHHHHHhcCCCCE
Confidence 355678888899999999999886532 2344455544433 3699999765433211 11334555666 888
Q ss_pred EEEe
Q 031202 154 TVVK 157 (164)
Q Consensus 154 liv~ 157 (164)
+=|+
T Consensus 103 VEVH 106 (156)
T 1gtz_A 103 VEVH 106 (156)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 383
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=33.12 E-value=87 Score=19.35 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=23.4
Q ss_pred EEEEEecCC----hhhHHHHHHHHHHhccCCCeE-EEEEEeCC
Q 031202 6 TVGVGMDNS----PNSKAALRWAADNLIDSGDLI-ILIHVQPP 43 (164)
Q Consensus 6 ~ILv~~d~s----~~s~~al~~a~~la~~~~~~l-~ll~v~~~ 43 (164)
++++.+... +.+..++++|..++. .+-+| .++...+.
T Consensus 14 ~~~ivv~~~Pyg~~~a~~Al~~A~aala-~g~eV~~VFf~~DG 55 (140)
T 2d1p_A 14 RFAIVVTGPAYGTQQASSAFQFAQALIA-DGHELSSVFFYREG 55 (140)
T ss_dssp EEEEEECSCSSSSSHHHHHHHHHHHHHH-TTCEEEEEEECGGG
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHH-CCCccCEEEEechH
Confidence 577777654 446677777776554 46788 66555443
No 384
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=32.94 E-value=1e+02 Score=22.64 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=36.3
Q ss_pred HHHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 86 ILDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
-|+..+.+.|..+... +..|+......+..... +|.||+..... ...+.+++++.+|||
T Consensus 88 SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~lA~~s~vPVI 152 (365)
T 4amu_A 88 AFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRF-YDGIEFRGFAQ---------SDVDALVKYSGVPVW 152 (365)
T ss_dssp HHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhh-CcEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 3444445556655432 22355556666666666 79999965432 246678888899987
No 385
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=32.87 E-value=1.1e+02 Score=20.64 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=44.5
Q ss_pred hhHHHHHHHHhhhc-CceEEEEEe---eCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 81 PEVLDILDTLSRTK-GAKVVAKVY---WGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~v~---~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
..+.+.+.+.+.+. |..+..... .+++. ...++.+...++|-||+......... . .-.-+....+||+
T Consensus 25 ~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~-~~~~~~~~~iPvV 98 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK-----G-FTDALNELGIPYI 98 (304)
T ss_dssp HHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH-----H-HHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH-----H-HHHHHHHCCCeEE
Confidence 46677778888877 666665432 23443 34566677889999999754322111 1 1223455689999
Q ss_pred EEeCC
Q 031202 155 VVKGN 159 (164)
Q Consensus 155 iv~~~ 159 (164)
++-..
T Consensus 99 ~~~~~ 103 (304)
T 3gbv_A 99 YIDSQ 103 (304)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 88653
No 386
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=32.77 E-value=42 Score=17.67 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=26.3
Q ss_pred CCCCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 1 MSKARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+++.=+++..+..+..+.+.....++++..+.++.++.+.-.
T Consensus 1 m~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~ 43 (85)
T 1fo5_A 1 MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVM 43 (85)
T ss_dssp CCCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESS
T ss_pred CCceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECC
Confidence 5554444455555666666666666777766656666666543
No 387
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=32.60 E-value=32 Score=25.04 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=36.5
Q ss_pred HHHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 86 ILDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
-|...+.+.|..+... +..|+......+....+ +|.||+.+... ...+.+.+++.+||+=
T Consensus 62 SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~lA~~s~vPVIN 127 (335)
T 1dxh_A 62 AFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRM-YDAIEYRGFKQ---------EIVEELAKFAGVPVFN 127 (335)
T ss_dssp HHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhh-CCEEEEecCCh---------hHHHHHHHhCCCCEEc
Confidence 3444445556655443 12344455555555566 69999976532 3467788889999973
No 388
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=32.57 E-value=22 Score=26.80 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee------CChhhHHHHHHH-hcCCCEEEEeecCCccccceeeccchhHHhcCCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW------GDPREKLCDAVE-DLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS 150 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~------g~~~~~I~~~a~-~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~ 150 (164)
+++.+.+.+..+....++-..+.. |+=.+.+.+.++ +.++.+|.+...+.......-.......++++..
T Consensus 83 ekL~~~i~~~~~~~~P~~I~v~~TC~~~iIGdDi~~v~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~ 159 (460)
T 2xdq_A 83 EELKRLCLEIKRDRNPSVIVWIGTCTTEIIKMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAARCP 159 (460)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEECHHHHHTTCCHHHHHHHHHHHHSSCEEEEECCTTTCCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCHHHHHhhCHHHHHHHHhhccCCcEEEEecCCccccHHHHHHHHHHHHHHHhh
Confidence 445555555555555554333222 655666667665 5678888887766442111112234455666543
No 389
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=32.53 E-value=1.1e+02 Score=20.24 Aligned_cols=48 Identities=8% Similarity=0.000 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeec
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~ 128 (164)
....+.+.+.+.+.|..+......++.. ..+++.....++|-||+...
T Consensus 18 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 18 NLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4567777788888888776543334443 34667777788998888643
No 390
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=32.45 E-value=58 Score=20.56 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=24.0
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+.|++.+||.+....-...+++.++..+..++.+.+-...
T Consensus 124 ~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~~~ 163 (178)
T 2xgg_A 124 KLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGHYV 163 (178)
T ss_dssp EEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC---
T ss_pred EEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 4566667876655433455556666678887777775543
No 391
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=32.32 E-value=1.7e+02 Score=22.56 Aligned_cols=28 Identities=32% Similarity=0.239 Sum_probs=20.9
Q ss_pred EeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 102 VYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 102 v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+..+.=..++.+.+++.++|+++=++++
T Consensus 421 v~~~~D~~~l~~~i~~~~pDLlig~s~~ 448 (523)
T 3u7q_B 421 VYIGKDLWHLRSLVFTDKPDFMIGNSYG 448 (523)
T ss_dssp EEESCCHHHHHHHHHHTCCSEEEECTTH
T ss_pred EEECCCHHHHHHHHHhcCCCEEEECccH
Confidence 4455446778888889999998877654
No 392
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=32.28 E-value=97 Score=19.62 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=18.4
Q ss_pred CceEEEEEeeCChhhHHHHHHHh----cCCCEEEEe
Q 031202 95 GAKVVAKVYWGDPREKLCDAVED----LKLDTLVVG 126 (164)
Q Consensus 95 ~~~~~~~v~~g~~~~~I~~~a~~----~~~dliv~g 126 (164)
|.++.......|-.+.|.+..++ .++|+||..
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 77776554444434444444333 478999884
No 393
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=32.21 E-value=48 Score=22.67 Aligned_cols=78 Identities=6% Similarity=-0.118 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCce
Q 031202 18 KAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAK 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
...+..++++|+..|++...++........ .....+ +...+.+..+.+.+.+.|+.
T Consensus 83 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~-------------~~~~~~-----------~~~~~~l~~l~~~a~~~Gv~ 138 (286)
T 3dx5_A 83 IEKCEQLAILANWFKTNKIRTFAGQKGSAD-------------FSQQER-----------QEYVNRIRMICELFAQHNMY 138 (286)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSCSSCGGG-------------SCHHHH-----------HHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCccc-------------CcHHHH-----------HHHHHHHHHHHHHHHHhCCE
Confidence 456667788888888877766533221100 000000 12344555666666677877
Q ss_pred EEEEEeeCC---hhhHHHHHHHhcC
Q 031202 98 VVAKVYWGD---PREKLCDAVEDLK 119 (164)
Q Consensus 98 ~~~~v~~g~---~~~~I~~~a~~~~ 119 (164)
+..+-..+. ..+.+.+.++..+
T Consensus 139 l~lE~~~~~~~~~~~~~~~l~~~~~ 163 (286)
T 3dx5_A 139 VLLETHPNTLTDTLPSTLELLGEVD 163 (286)
T ss_dssp EEEECCTTSTTSSHHHHHHHHHHHC
T ss_pred EEEecCCCcCcCCHHHHHHHHHhcC
Confidence 766643332 2355556666554
No 394
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=32.05 E-value=77 Score=21.81 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=26.3
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+.|++.+||...+...+..++..++..+..|+.+.+-..
T Consensus 130 ~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~ 168 (281)
T 4hqf_A 130 QLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQG 168 (281)
T ss_dssp EEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 456666788765543444456666778888888888664
No 395
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=31.97 E-value=80 Score=21.49 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=22.6
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
.++.+...+.++|.|.+......+......-.....+.+..++||++.
T Consensus 33 ~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ 80 (266)
T 2w6r_A 33 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 80 (266)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEE
Confidence 345555556666766664332221111011123445555566776663
No 396
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=31.58 E-value=1.3e+02 Score=20.67 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeecc-chhHHhcCCCccEEEE
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGS-VSNHVVTNSSCPVTVV 156 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs-~~~~v~~~~~~pVliv 156 (164)
.....+.+.+.+.+.|..+......++. ...+++.....++|-||+....... . ....+ .. .+||+++
T Consensus 30 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~~l-~~-~iPvV~i 100 (303)
T 3kke_A 30 FADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-------DDMLAAV-LE-GVPAVTI 100 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-------HHHHHHH-HT-TSCEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-------HHHHHHH-hC-CCCEEEE
Confidence 4567778888888889888764444443 3457777888899999996543221 1 23334 44 8999988
Q ss_pred eCC
Q 031202 157 KGN 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 101 ~~~ 103 (303)
T 3kke_A 101 NSR 103 (303)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 397
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=31.54 E-value=71 Score=21.60 Aligned_cols=76 Identities=11% Similarity=-0.064 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCceEE
Q 031202 20 ALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGAKVV 99 (164)
Q Consensus 20 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
.+..++++|+..|++...+++.+.... +... ..+...+.+..+.+.+++.|+.+.
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~~---------------~~~~----------~~~~~~~~l~~l~~~a~~~Gv~l~ 139 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMDE---------------EPVR----------YISQLARRIRQVAVELLPLGMRVG 139 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEESS---------------CHHH----------HHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCC---------------cchh----------hHHHHHHHHHHHHHHHHHcCCEEE
Confidence 355688889999998877654321100 0000 001234556666677778899887
Q ss_pred EEEee-----------CChhhHHHHHHHhcCC
Q 031202 100 AKVYW-----------GDPREKLCDAVEDLKL 120 (164)
Q Consensus 100 ~~v~~-----------g~~~~~I~~~a~~~~~ 120 (164)
.+-.. ....+.+.+.++..+.
T Consensus 140 lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 171 (281)
T 3u0h_A 140 LEYVGPHHLRHRRYPFVQSLADLKTFWEAIGA 171 (281)
T ss_dssp EECCCCGGGCCSSEECCCSHHHHHHHHHHHCC
T ss_pred EEeccccccccccccccCCHHHHHHHHHHcCC
Confidence 76431 2345566677776544
No 398
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=31.54 E-value=99 Score=19.50 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=46.8
Q ss_pred CCChhHHHHHHHHhhhcCceEEEEEe--eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 78 TSNPEVLDILDTLSRTKGAKVVAKVY--WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
...+++.+.+++.+.+.|+++++..- +|...+.|-+...+ +|-||+..-..+... --....+....+|++=
T Consensus 27 ~tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~--~dgiiINpgA~THtS-----vAlrDAl~~v~~P~VE 99 (146)
T 1h05_A 27 TTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADA--AEPVILNAGGLTHTS-----VALRDACAELSAPLIE 99 (146)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHH--TCCEEEECGGGGGTC-----HHHHHHHHTCCSCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhc--CcEEEECchhhcccc-----HHHHHHHHhCCCCEEE
Confidence 44577888888888999998886532 23444554444333 699999755443221 1234567777899887
Q ss_pred Ee
Q 031202 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 100 VH 101 (146)
T 1h05_A 100 VH 101 (146)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 399
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=31.53 E-value=79 Score=18.33 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC--CCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN--SSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~--~~~pVliv~~~ 159 (164)
...+.+...+...|..+.. ..+..+++....+...+|+|++...-. ...+. ...+.+-.. ..+||+++-..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQ-PESGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCS-SSCHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred HHHHHHHHHHHHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCC-CCCHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 4455666666666766543 445555555444444489999975421 11111 234444443 34888888654
No 400
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=31.35 E-value=1e+02 Score=19.61 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=44.5
Q ss_pred CCCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEeecCCccccceeeccc-hhHHhcCCCccE
Q 031202 77 LTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVGSRGLGALKRVLLGSV-SNHVVTNSSCPV 153 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g~~~~~~~~~~~~gs~-~~~v~~~~~~pV 153 (164)
....+++.+.+.+.+.+.|+++++. ..+-..+|++...+ .++|-||+..-..+.. |+ ....+...++|+
T Consensus 31 ~~Tl~di~~~l~~~a~~~g~~~~~~--QSN~EgeLId~Ih~a~~~~dgiiINpgA~THt------SvAlrDAl~~~~~P~ 102 (153)
T 3lwz_A 31 YTTLAEIVSQLEIQAQGMDVALSHL--QSNAEHALIDSIHQARGNTDFILINPAAFTHT------SVALRDALLGVQIPF 102 (153)
T ss_dssp CCCHHHHHHHHHHHHHHTTEEEEEE--ECSCHHHHHHHHHHHTTTCSEEEEECGGGGGT------CHHHHHHHHHHTCCE
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEE--ecCCHHHHHHHHHHhhhcCceEEEccccceec------hHHHHHHHHhcCCCE
Confidence 3556778888888888889888864 33333334333222 4579999976544322 21 223455567888
Q ss_pred EEEe
Q 031202 154 TVVK 157 (164)
Q Consensus 154 liv~ 157 (164)
+=|+
T Consensus 103 VEVH 106 (153)
T 3lwz_A 103 IEIH 106 (153)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 401
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=31.34 E-value=1.1e+02 Score=21.21 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=58.3
Q ss_pred ecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCC--hhhHHHhhhhhhhcCCCChhHHHHHH
Q 031202 11 MDNSPNSKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVP--LEEFREINFSKQYGLTSNPEVLDILD 88 (164)
Q Consensus 11 ~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (164)
--+--.+....+..+++|+..+-.|= -|.-.+.. ...|--.+. ...+.. ....-+..+.
T Consensus 30 CGfHAGDp~~M~~Tv~lA~~~gV~IG-AHPgypDl--------~GFGRR~m~~s~~el~~----------~v~YQiGAL~ 90 (252)
T 1xw8_A 30 CGFHAGDAQIMQACVREAIKNGVAIG-AHPSFPDR--------ENFGRSAMQLPPETVYA----------QTLYQIGALA 90 (252)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHTCEEE-EECCCC---------------CCCCCCHHHHHH----------HHHHHHHHHH
T ss_pred hcccCCCHHHHHHHHHHHHHcCCeee-cCCCCCcc--------cCCCCCCCCCCHHHHHH----------HHHHHHHHHH
Confidence 33334455677888888887776542 34433332 112211111 111111 1234466777
Q ss_pred HHhhhcCceEEEEEee----------CChhhHHHHHHHhcCCCEEEEeecC
Q 031202 89 TLSRTKGAKVVAKVYW----------GDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~v~~----------g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+++..|.++...--. -..+++|.+.+...+.+|++++..+
T Consensus 91 a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~g 141 (252)
T 1xw8_A 91 TIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAG 141 (252)
T ss_dssp HHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred HHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 8888889988864211 2567999999999999999999654
No 402
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=31.31 E-value=1.2e+02 Score=20.38 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEee-CChhhHHHHHHHhcCCCEEEEeecC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYW-GDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
..+.+.+.+.++..|.+++..-.. +.-.+...+...+. |.||++..-
T Consensus 46 ~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~a--D~iv~~~P~ 93 (218)
T 3rpe_A 46 LTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWA--DTIIYQMPA 93 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHC--SEEEEEEEC
T ss_pred HHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhC--CEEEEECCh
Confidence 456666777777778888766443 32234445555555 999999754
No 403
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=31.24 E-value=77 Score=18.12 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=36.1
Q ss_pred hHHHHHHHHhhhcCc-eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEe
Q 031202 82 EVLDILDTLSRTKGA-KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~ 157 (164)
...+.+...+...|. .+. ...+ .++.++..+...+|++++...- ....+. .....+-.. ..+|++++-
T Consensus 17 ~~~~~l~~~L~~~g~~~v~---~~~~-~~~a~~~~~~~~~dlvl~D~~l-~~~~g~---~~~~~l~~~~~~~~~~ii~~s 88 (129)
T 1p6q_A 17 TSRLLLGDALQQLGFKQIT---AAGD-GEQGMKIMAQNPHHLVISDFNM-PKMDGL---GLLQAVRANPATKKAAFIILT 88 (129)
T ss_dssp HHHHHHHHHHHTTTCSCEE---CCSS-HHHHHHHHHTSCCSEEEECSSS-CSSCHH---HHHHHHTTCTTSTTCEEEECC
T ss_pred HHHHHHHHHHHHCCCcEEE---ecCC-HHHHHHHHHcCCCCEEEEeCCC-CCCCHH---HHHHHHhcCccccCCCEEEEe
Confidence 444555555555565 222 2334 3445566677789999997542 111111 223434332 357888875
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 89 ~ 89 (129)
T 1p6q_A 89 A 89 (129)
T ss_dssp S
T ss_pred C
Confidence 4
No 404
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=30.82 E-value=1.4e+02 Score=20.91 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......++.. ..+++.....++|-||+...... ......+....+||+++.
T Consensus 77 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~--------~~~~~~l~~~~iPvV~~~ 148 (339)
T 3h5o_A 77 FLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA--------EPFERILSQHALPVVYMM 148 (339)
T ss_dssp THHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC--------TTHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC--------HHHHHHHhcCCCCEEEEe
Confidence 45777888888888898877543334443 45666777789999988653221 112335667789999885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 149 ~ 149 (339)
T 3h5o_A 149 D 149 (339)
T ss_dssp S
T ss_pred e
Confidence 4
No 405
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=30.70 E-value=1e+02 Score=19.37 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=46.5
Q ss_pred CCCChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh--cCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 77 LTSNPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED--LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
....+++.+.+++.+.+.|+++++. ..+-..+|++...+ .++|-||+..-..+... --....+...++|++
T Consensus 24 ~~tl~di~~~l~~~a~~~g~~~~~~--QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtS-----vAlrDAl~~v~~P~V 96 (143)
T 1gqo_A 24 RQTLTDIETDLFQFAEALHIQLTFF--QSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYS-----YAIRDAVSSISLPVV 96 (143)
T ss_dssp SCCHHHHHHHHHHHHHHHTCEEEEE--ECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTC-----HHHHHHHHTSCSCEE
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEEE--eeCCHHHHHHHHHHhhhcCcEEEEccchhcccc-----HHHHHHHHhCCCCEE
Confidence 3556788888888999999988864 33333334433322 24799999765443221 123456667789988
Q ss_pred EEe
Q 031202 155 VVK 157 (164)
Q Consensus 155 iv~ 157 (164)
=|+
T Consensus 97 EVH 99 (143)
T 1gqo_A 97 EVH 99 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 406
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=30.60 E-value=96 Score=21.02 Aligned_cols=39 Identities=15% Similarity=-0.039 Sum_probs=19.6
Q ss_pred CCCCc-EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 1 MSKAR-TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 1 m~~~~-~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
|+.++ ++.+.+-.+...---...|..|++ .|++|.+...
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~-~Ga~Vvi~~r 40 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQ-LGAKLVFTYR 40 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHH-TTCEEEEEES
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHH-CCCEEEEEEC
Confidence 45444 555555433211123344555554 6888877653
No 407
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=30.57 E-value=54 Score=18.74 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=36.8
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+. ++..+..+...+|++++...-. ...+. .....+-.. ..+|++++-.
T Consensus 13 ~~~~~l~~~l~~~g~~v~---~~~~~-~~a~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 13 PIREMVCFVLEQNGFQPV---EAEDY-DSAVNQLNEPWPDLILLAWMLP-GGSGI---QFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp HHHHHHHHHHHHTTCEEE---EECSH-HHHHTTCSSSCCSEEEEESEET-TEEHH---HHHHHHHTSTTTTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCceEE---EeCCH-HHHHHHHhccCCCEEEEecCCC-CCCHH---HHHHHHHhCcccCCCCEEEEeC
Confidence 344555555665676543 23343 4444566677899999975421 11111 233444333 3588888753
No 408
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=30.52 E-value=32 Score=24.90 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|+..+.+.|..+-.. +..|+......+....+ +|.||+.+... ...+.+.+++.+||+
T Consensus 76 FE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 139 (325)
T 1vlv_A 76 FETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRM-VDAIMFRGYKQ---------ETVEKLAEYSGVPVY 139 (325)
T ss_dssp HHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTT-CSEEEEESSCH---------HHHHHHHHHHCSCEE
T ss_pred HHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHh-CCEEEEECCCh---------HHHHHHHHhCCCCEE
Confidence 344444556554432 12345566666666677 79999976532 245667788889986
No 409
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=30.43 E-value=96 Score=22.16 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=29.0
Q ss_pred HHHHHhhhcCceEEEEEeeCCh-hhHHHHHHHhcCCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDP-REKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~-~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+.+.++|+++-. -.+. .+++.+..++.++|++|+...+
T Consensus 50 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 91 (314)
T 1fmt_A 50 PVKVLAEEKGLPVFQ---PVSLRPQENQQLVAELQADVMVVVAYG 91 (314)
T ss_dssp HHHHHHHHTTCCEEC---CSCSCSHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHcCCcEEe---cCCCCCHHHHHHHHhcCCCEEEEeecc
Confidence 355677778888732 1222 4678888999999999998664
No 410
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=30.38 E-value=84 Score=18.28 Aligned_cols=67 Identities=18% Similarity=0.042 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~ 159 (164)
....+.+...+...|..+. ...+. ++.++..+...+|++++ .+..++ .....+-... .+||+++-..
T Consensus 28 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~dlvi~--~~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 28 SVLGGEIEKGLNVKGFMAD---VTESL-EDGEYLMDIRNYDLVMV--SDKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESCH-HHHHHHHHHSCCSEEEE--CSTTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHcCcEEE---EeCCH-HHHHHHHHcCCCCEEEE--cCccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 3455566666666676544 23444 44445667778999992 222221 1233333224 6888888543
No 411
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=30.23 E-value=1.4e+02 Score=20.83 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=36.9
Q ss_pred hhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC---ccccceeeccchhHHhcCCCccEEEEeCCCC
Q 031202 92 RTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL---GALKRVLLGSVSNHVVTNSSCPVTVVKGNPV 161 (164)
Q Consensus 92 ~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~---~~~~~~~~gs~~~~v~~~~~~pVliv~~~~~ 161 (164)
.+.|+++... ..+..-.++ + ++|.+++|..+- ++............++++..+|++++=+..+
T Consensus 157 ~~~gI~vtli--~dsa~~~~m---~--~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K 222 (276)
T 1vb5_A 157 EFSGIEFEVI--TDAQMGLFC---R--EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222 (276)
T ss_dssp HHTTCCEEEE--CGGGHHHHH---T--TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred HHCCCCEEEE--cHHHHHHHH---c--cCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEeccccc
Confidence 3468888753 233233333 2 689999998652 2222222233455567778899999865443
No 412
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=30.14 E-value=1.2e+02 Score=19.87 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
..+.++..++..|++++.... +...++...+..++|+++.+
T Consensus 49 ~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 89 (249)
T 4f3p_A 49 DLDLWAEIAKGAGWTYKIQPM---DFAGLIPALQTQNIDVALSG 89 (249)
T ss_dssp HHHHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSCSEEEEE
T ss_pred hHHHHHHHHHHcCCceEEEec---CHHHHHHHHHCCCCCEEEec
Confidence 455556666667998887653 45778888899999997654
No 413
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=29.96 E-value=1.7e+02 Score=21.67 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
-+.+++.|-.+ +..|+.+..+.+..++....+ .. ....+-+..+.+.+++.|+
T Consensus 155 ~e~a~~~a~~~-k~aGa~~vk~q~fkprts~~~-----f~---------------------gl~~egl~~L~~~~~~~Gl 207 (385)
T 3nvt_A 155 YEQVAAVAESI-KAKGLKLIRGGAFKPRTSPYD-----FQ---------------------GLGLEGLKILKRVSDEYGL 207 (385)
T ss_dssp HHHHHHHHHHH-HHTTCCEEECBSSCCCSSTTS-----CC---------------------CCTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-HHcCCCeEEcccccCCCChHh-----hc---------------------CCCHHHHHHHHHHHHHcCC
Confidence 34556655554 457888777777765432110 00 1123556788888999999
Q ss_pred eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCC
Q 031202 97 KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGL 130 (164)
Q Consensus 97 ~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~ 130 (164)
.+-+.+..-.-.+ ++.+. +|.+=||++.-
T Consensus 208 ~~~te~~d~~~~~----~l~~~-vd~lkIgs~~~ 236 (385)
T 3nvt_A 208 GVISEIVTPADIE----VALDY-VDVIQIGARNM 236 (385)
T ss_dssp EEEEECCSGGGHH----HHTTT-CSEEEECGGGT
T ss_pred EEEEecCCHHHHH----HHHhh-CCEEEECcccc
Confidence 9988765433333 33344 67787776643
No 414
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=29.88 E-value=1.5e+02 Score=20.92 Aligned_cols=68 Identities=12% Similarity=-0.089 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhhcCceEEEE---------E-ee--CChhhHHHHHHHhc--CCCEEEEeecCCccccceeeccchhHHh
Q 031202 81 PEVLDILDTLSRTKGAKVVAK---------V-YW--GDPREKLCDAVEDL--KLDTLVVGSRGLGALKRVLLGSVSNHVV 146 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---------v-~~--g~~~~~I~~~a~~~--~~dliv~g~~~~~~~~~~~~gs~~~~v~ 146 (164)
.++.+.+...+.+.++++... + .+ |+..++|++..+.. ++++.++-+.... +..++
T Consensus 65 ~~L~~~f~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~----------~~~~A 134 (286)
T 3n0v_A 65 AGFRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPD----------LEPLA 134 (286)
T ss_dssp HHHHHHHHHHHGGGTCEEEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSST----------THHHH
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHH----------HHHHH
Confidence 455666666677666655432 1 12 46788999887654 4666666655322 23467
Q ss_pred cCCCccEEEEeC
Q 031202 147 TNSSCPVTVVKG 158 (164)
Q Consensus 147 ~~~~~pVliv~~ 158 (164)
....+|+..+|.
T Consensus 135 ~~~gIp~~~~~~ 146 (286)
T 3n0v_A 135 HWHKIPYYHFAL 146 (286)
T ss_dssp HHTTCCEEECCC
T ss_pred HHcCCCEEEeCC
Confidence 788899988875
No 415
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=29.86 E-value=1.6e+02 Score=21.25 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+++.+.+.+.+...|.+++..-........+.....+. |.+|+|+....
T Consensus 266 ~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--d~ii~g~p~y~ 314 (398)
T 1ycg_A 266 EKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDA--RAVLVGSPTIN 314 (398)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHC--SEEEEECCCBT
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHC--CEEEEECCccC
Confidence 34555555666666777665433333345555555555 99999976444
No 416
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=29.86 E-value=1.4e+02 Score=20.56 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEe-eCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVY-WGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~-~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
....+-+.+.+.+.|.++..... .+++.. ..++.....++|-||+......... ...+ .+....+||+.+-
T Consensus 16 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 16 SQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI-----PTIK-KALEMGIPVVTLD 89 (313)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHHH-HHHHCCCeEEEeC
Confidence 35666677777778887765322 345543 3455556678999998654322111 1122 3445789999885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 90 ~ 90 (313)
T 2h3h_A 90 T 90 (313)
T ss_dssp S
T ss_pred C
Confidence 4
No 417
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=29.74 E-value=1.2e+02 Score=20.34 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=12.4
Q ss_pred hhHHHHHHHhcCCCEEEEeec
Q 031202 108 REKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 108 ~~~I~~~a~~~~~dliv~g~~ 128 (164)
.+.|...++++++|+|++|..
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t 100 (217)
T 3ih5_A 80 TSILVNLFKEEQPQICLMGAT 100 (217)
T ss_dssp HHHHHHHHHHHCCSEEEEECS
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 345556666666666666643
No 418
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=29.72 E-value=70 Score=21.18 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhcCceEEEEEee----------CChhhHHHHHHHhcCCCEEEE
Q 031202 83 VLDILDTLSRTKGAKVVAKVYW----------GDPREKLCDAVEDLKLDTLVV 125 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~----------g~~~~~I~~~a~~~~~dliv~ 125 (164)
..+.++..++..|++++..... ......++...+...+|+++-
T Consensus 36 ~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~ 88 (259)
T 3g3k_A 36 CIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVA 88 (259)
T ss_dssp HHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEe
Confidence 4556666667779998876542 235778888999999999864
No 419
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=29.72 E-value=1.3e+02 Score=20.25 Aligned_cols=72 Identities=13% Similarity=0.222 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ..+++.....++|-||+....... .....+.+..++||+++-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-------~~~~~l~~~~~iPvV~~~~ 95 (289)
T 1dbq_A 23 AEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMDW 95 (289)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-------HHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCH-------HHHHHHHhccCCCEEEEcc
Confidence 4566777777777888776543334543 345566667889988886432211 1123333336799988864
Q ss_pred C
Q 031202 159 N 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 96 ~ 96 (289)
T 1dbq_A 96 G 96 (289)
T ss_dssp S
T ss_pred C
Confidence 3
No 420
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=29.72 E-value=1.3e+02 Score=20.16 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=27.5
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.++.+.+.+.++|.|++....+.+...-+--....++....++||+..-
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~G 197 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASG 197 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEEC
Confidence 4556667778899777654433221111111356777788889998753
No 421
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=29.70 E-value=60 Score=20.61 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=25.5
Q ss_pred cCceEEEEEeeCC--hhhHHHHHHHhcCCCEEEEeec
Q 031202 94 KGAKVVAKVYWGD--PREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 94 ~~~~~~~~v~~g~--~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.|++++.. ..+. -...|.+.+++..+|+||--..
T Consensus 56 ~Gl~v~~v-~k~~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 56 TGMNVNAM-LSGPMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HCCCCEEE-CCGGGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCceeEEE-EecCCCCCchHHHHHHCCCccEEEEcCC
Confidence 58888763 3322 2357999999999999998766
No 422
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=29.34 E-value=89 Score=18.26 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~ 159 (164)
....+.+...+...|..+. ...+ ..+.++..+...+|+|++.. - ....+. .....+-... .+||+++-..
T Consensus 14 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~-~-~~~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 14 RITFLAVKNALEKDGFNVI---WAKN-EQEAFTFLRREKIDLVFVDV-F-EGEESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHHHHGGGTCEEE---EESS-HHHHHHHHTTSCCSEEEEEC-T-TTHHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCEEE---EECC-HHHHHHHHhccCCCEEEEeC-C-CCCcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 3445566666666676554 2344 34455666778899999986 2 222111 2233333333 5899888643
No 423
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=29.27 E-value=45 Score=21.54 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=21.5
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
+.|++.+|+.+.....+..+++.++..+..++.+.+
T Consensus 110 ~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igv 145 (200)
T 1v7p_C 110 KVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAV 145 (200)
T ss_dssp EEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEE
T ss_pred eEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEe
Confidence 346666677655443334445555667777777776
No 424
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.17 E-value=86 Score=18.02 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC---CCccEEEEeCC
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN---SSCPVTVVKGN 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~---~~~pVliv~~~ 159 (164)
..+.+...+. .+..+. ...+. ++.++..+...+|+|++...-. ...+. .....+-.. ..+||+++-..
T Consensus 16 ~~~~l~~~l~-~~~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~~l~-~~~g~---~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 16 MRETLRLLLS-GEFDCT---TAADG-ASGLQQALAHPPDVLISDVNMD-GMDGY---ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHT-TTSEEE---EESSH-HHHHHHHHHSCCSEEEECSSCS-SSCHH---HHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHHHh-CCcEEE---EECCH-HHHHHHHhcCCCCEEEEeCCCC-CCCHH---HHHHHHHhCCccCCCCEEEEeCC
Confidence 3444444444 455443 23343 4445666778899999975421 11111 233444443 35899888654
No 425
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=29.14 E-value=1.3e+02 Score=20.06 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.....++|-||+...... . ...+ .+...++||+++-.
T Consensus 19 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-----~~~~-~l~~~~iPvV~~~~ 90 (275)
T 3d8u_A 19 AHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS--Q-----RTHQ-LLEASNTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC--H-----HHHH-HHHHHTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--H-----HHHH-HHHhCCCCEEEEee
Confidence 3566666777777777665433333443 34556666677887776533211 0 1122 23445678877743
No 426
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=28.99 E-value=95 Score=18.46 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~ 159 (164)
....+.+...+...+..+.+ ....+ .++.++.++...+|+|++...-. ...+. .....+-... .+||+++-..
T Consensus 30 ~~~~~~l~~~L~~~~~~~~v-~~~~~-~~~al~~l~~~~~dlii~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 30 SMLRDAMCQLLTLQPDVESV-LQAKN-GQEAIQLLEKESVDIAILDVEMP-VKTGL---EVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHHHHHHTSTTEEEE-EEESS-HHHHHHHHTTSCCSEEEECSSCS-SSCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCcEEE-EEECC-HHHHHHHhhccCCCEEEEeCCCC-CCcHH---HHHHHHHHhCCCCeEEEEeCC
Confidence 34455666666655533332 22334 44556677788899999985421 11111 2344444433 4888888654
No 427
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=28.98 E-value=1e+02 Score=21.27 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=19.3
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+..+. ..+.++.+++.+++|++-|.
T Consensus 69 ~~~~~-~~mL~d~G~~~ViiGHSERR 93 (244)
T 2v5b_A 69 GNADA-LASLKDYGISWVVLGHSERR 93 (244)
T ss_dssp CCHHH-HHHHHHTTCCEEEECCHHHH
T ss_pred CCCCC-HHHHHHcCCCEEEeCchhhh
Confidence 44444 88999999999999987543
No 428
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=28.97 E-value=74 Score=21.37 Aligned_cols=36 Identities=3% Similarity=-0.188 Sum_probs=20.6
Q ss_pred CCcEEEEEecCChhhHHHHHHHHH-HhccCCCeEEEE
Q 031202 3 KARTVGVGMDNSPNSKAALRWAAD-NLIDSGDLIILI 38 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~-la~~~~~~l~ll 38 (164)
.|+.|+|.-..+...+..+..++- ..++.|.++..+
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 457788777766666555543332 233456666554
No 429
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=28.96 E-value=72 Score=21.33 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhccCCCeEEEEE
Q 031202 17 SKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+...+..++++|+..|++..+++
T Consensus 83 ~~~~~~~~i~~a~~lG~~~v~~~ 105 (260)
T 1k77_A 83 AHADIDLALEYALALNCEQVHVM 105 (260)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEC
Confidence 45567888899999999877665
No 430
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=28.95 E-value=46 Score=23.16 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=23.5
Q ss_pred EEEEEeeCChhhHHHHHHHhcCCCEEEEee
Q 031202 98 VVAKVYWGDPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 98 ~~~~v~~g~~~~~I~~~a~~~~~dliv~g~ 127 (164)
++.....=++.+++++.|.+.++|+||.-+
T Consensus 38 V~~I~~alD~t~~vi~eAi~~gadlIitHH 67 (267)
T 2fyw_A 38 IQRVMVALDIREETVAEAIEKGVDLIIVKH 67 (267)
T ss_dssp CSEEEEESCCCHHHHHHHHHTTCSEEEESS
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEECC
Confidence 444344458899999999999999999853
No 431
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=28.92 E-value=96 Score=21.23 Aligned_cols=38 Identities=8% Similarity=-0.028 Sum_probs=25.8
Q ss_pred CcEEEEEecCCh---h--------hHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 4 ARTVGVGMDNSP---N--------SKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 4 ~~~ILv~~d~s~---~--------s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
|++|||.+.... . ...-+-.-....++-|.+++++...
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~ 57 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASET 57 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999998731 1 1333444566667789999998753
No 432
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=28.87 E-value=72 Score=21.25 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=29.2
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+..+.+.+.++|.|++......+...-+--.....+....++||++.-
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~G 205 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASG 205 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeC
Confidence 3556777788899998876543322111111234556666688988754
No 433
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=28.81 E-value=1e+02 Score=21.10 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=31.9
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
..+.|+++++.+-..+....|..++.+.++.+++=+.-
T Consensus 133 ~V~EVIlAtnpTvEGEaTA~YI~~~Lk~~~vkVTRiA~ 170 (228)
T 1vdd_A 133 QGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAY 170 (228)
T ss_dssp TTCEEEECCCSSHHHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHHHcCCCEEEecc
Confidence 36789999999999999999999999988877765543
No 434
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=28.58 E-value=1.3e+02 Score=21.42 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=41.6
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhH--HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCC--ccEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREK--LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSS--CPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~--I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~--~pVliv~ 157 (164)
+..+.+.+.+ ..+.+-.-+...+..+. +.+.+++.++|-+++-..- ....+--+=.--..|+..++ .||+++.
T Consensus 65 ~v~~~~v~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilYn 141 (313)
T 3dz1_A 65 AVATRFIKRA--KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQD 141 (313)
T ss_dssp HHHHHHHHHC--TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHc--CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEEe
Confidence 3444444444 24555443433354444 4567888999999986543 22111111123456777778 9999986
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
-+
T Consensus 142 ~P 143 (313)
T 3dz1_A 142 YP 143 (313)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 435
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=28.49 E-value=1.2e+02 Score=21.07 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcC--CCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLK--LDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~--~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
....+.+.+.+.+.|.++......+++.. ..++.....+ +|-||+......... ... ..+....+||+.+
T Consensus 21 ~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~~ 94 (332)
T 2rjo_A 21 TAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADAR-----VIV-EACSKAGAYVTTI 94 (332)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH-----HHH-HHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH-----HHH-HHHHHCCCeEEEE
Confidence 45667777777888888765433445432 3455555667 999988643211100 111 2234467898888
Q ss_pred eCC
Q 031202 157 KGN 159 (164)
Q Consensus 157 ~~~ 159 (164)
...
T Consensus 95 ~~~ 97 (332)
T 2rjo_A 95 WNK 97 (332)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 436
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=28.48 E-value=1.2e+02 Score=19.67 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
-..+.++..+++.|++++.... +...++...+..++|+++.+
T Consensus 29 ~~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 29 FDIDLMQEICRRLHATCTFEAY---IFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE---CGGGHHHHHHTTSSSEECSS
T ss_pred ehHHHHHHHHHHhCCceEEEEc---CHHHHHHHHhCCCCCEEEEc
Confidence 3456666677777999887543 46788888899999987654
No 437
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=28.42 E-value=95 Score=20.74 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCCCEEEEeecCCccc-cceeeccchhHHhcCCCccEEEEe
Q 031202 109 EKLCDAVEDLKLDTLVVGSRGLGAL-KRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 109 ~~I~~~a~~~~~dliv~g~~~~~~~-~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.+..+.+.+.+++.|++....+.+. ... --....++....++||+..-
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~ipvia~G 200 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTDAPVIASG 200 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCCCCEEEEC
Confidence 4566667778899887765444322 121 11355667777789988753
No 438
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=28.42 E-value=1.2e+02 Score=19.47 Aligned_cols=44 Identities=7% Similarity=-0.002 Sum_probs=23.9
Q ss_pred hHHHHHHHHhh---hcCceEEEEEeeCChhhHHHHH----HHhcCCCEEEEe
Q 031202 82 EVLDILDTLSR---TKGAKVVAKVYWGDPREKLCDA----VEDLKLDTLVVG 126 (164)
Q Consensus 82 ~~~~~~~~~~~---~~~~~~~~~v~~g~~~~~I~~~----a~~~~~dliv~g 126 (164)
.-...+...++ +.|.++... ..+|-.+.|.+. +.+.++|+||..
T Consensus 25 sn~~~l~~~l~~l~~~G~~v~~~-iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 25 ISGKAIIDYLKDVIITPFEVEYR-VIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp HHHHHHHHHHHHHBCSCCEEEEE-EECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred chHHHHHHHHHHHHhCCCEEEEE-EcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 33445555555 778888433 344333333333 332368999884
No 439
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=28.42 E-value=88 Score=22.22 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 87 LDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
+.+.+.++|+++... ..--.+++.+..++.++|++|+...+
T Consensus 45 v~~~A~~~gIpv~~~--~~~~~~~~~~~l~~~~~Dliv~~~y~ 85 (305)
T 2bln_A 45 VARLAAERGIPVYAP--DNVNHPLWVERIAQLSPDVIFSFYYR 85 (305)
T ss_dssp HHHHHHHHTCCEECC--SCCCSHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHcCCCEECC--CcCCcHHHHHHHHhcCCCEEEEeccc
Confidence 445666778886532 11113467888889999999997664
No 440
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=28.39 E-value=89 Score=17.97 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEeCC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVKGN 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~~~ 159 (164)
....+.+...+...|..+.. ...+.. +..+..++..+|+|++...-.. ..+. .....+-... .+|++++-..
T Consensus 11 ~~~~~~l~~~L~~~g~~v~~--~~~~~~-~a~~~~~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 11 PLAIAAIRNLLIKNDIEILA--ELTEGG-SAVQRVETLKPDIVIIDVDIPG-VNGI---QVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHHHHHHHTTEEEEE--EESSST-THHHHHHHHCCSEEEEETTCSS-SCHH---HHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHHHHHHhhCCcEEEE--EcCCHH-HHHHHHHhcCCCEEEEecCCCC-CChH---HHHHHHHhcCCCCeEEEEeCC
Confidence 34455666666667754432 233333 3334556678999999865221 1111 2344444444 4888887654
Q ss_pred C
Q 031202 160 P 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 84 ~ 84 (134)
T 3f6c_A 84 N 84 (134)
T ss_dssp -
T ss_pred C
Confidence 3
No 441
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=28.37 E-value=1.1e+02 Score=20.77 Aligned_cols=43 Identities=19% Similarity=0.004 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
..++.+.+++.|.++-..+.-+.+.+.+..+... +|+|.+-+-
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~--~D~VlvmsV 137 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHK--ADKITVMTV 137 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG--CSEEEEESS
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhc--CCEEEEeee
Confidence 4566677777888877656455777777776664 588866443
No 442
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=28.28 E-value=1.4e+02 Score=20.34 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+....+....|.+.|++.-. -.++....++++..-+.+++.+|+.-..
T Consensus 101 s~yqr~r~e~vc~~~gl~~~~-PLW~~d~~~Ll~e~i~~G~~aiiv~v~~ 149 (237)
T 3rjz_A 101 SKYQRKRIEKVAKELGLEVYT-PAWGRDAKEYMRELLNLGFKIMVVGVSA 149 (237)
T ss_dssp CCSHHHHHHHHHHHTTCEEEC-SSSSCCHHHHHHHHHHTTCEEEEEEEES
T ss_pred hHHHHHHHHHHHHHcCCEEEc-cccCCCHHHHHHHHHHCCCEEEEEEEec
Confidence 345667888889899988776 6788778888888888999999998654
No 443
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=28.27 E-value=1.4e+02 Score=20.18 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEeeCCh--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVYWGDP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
.....+.+.+.+.+.|..+......++. ...+++.....++|-||+....... ...+ .+....+||+++-
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 23 LDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-------PRVQ-FLLKQKFPFVAFG 94 (287)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-------HHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-------HHHH-HHHhcCCCEEEEC
Confidence 3567777778888888776543222333 3456777778889998886432211 1122 3445678988885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 95 ~ 95 (287)
T 3bbl_A 95 R 95 (287)
T ss_dssp C
T ss_pred C
Confidence 4
No 444
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=28.21 E-value=1.3e+02 Score=19.74 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhhh-c-CceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 81 PEVLDILDTLSRT-K-GAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~-~-~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
....+.+++.+++ . |++++..... ..+........++|+.+.|+..
T Consensus 112 ~~~a~~i~~~l~~~i~GI~v~i~~~~---~~~~~~~~~~g~~d~~~~~w~~ 159 (229)
T 3o6p_A 112 KKTVEFVQGSIQDALDGVKVTVSPVP---FSVRLDRSNKGDFDAVIGGWSA 159 (229)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEEC---HHHHHHHHHHTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecC---HHHHHHHhhcCCceEEEecccC
Confidence 3456677778888 7 9888866443 3344445567788999988654
No 445
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=28.20 E-value=53 Score=21.86 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHhhhcCc--eEEEEEeeCChhhH--------------HHHHH-------HhcCCCEEEEeec
Q 031202 80 NPEVLDILDTLSRTKGA--KVVAKVYWGDPREK--------------LCDAV-------EDLKLDTLVVGSR 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~v~~g~~~~~--------------I~~~a-------~~~~~dliv~g~~ 128 (164)
..+..+.+++.+.+.|+ .-...+..|+..+. +-+++ ....+|+|+|-..
T Consensus 60 d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 60 DRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp CHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 45667777777888776 32333555654332 33343 2256899999754
No 446
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.18 E-value=1.4e+02 Score=20.13 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=41.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......+++. ..+++.....++|-||+....... .....+ ..+||+.+-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~l---~~iPvV~~~~ 92 (288)
T 2qu7_A 23 TEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKF-------QMKREW---LKIPIMTLDR 92 (288)
T ss_dssp HHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCC-------CCCGGG---GGSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCCh-------HHHHHh---cCCCEEEEec
Confidence 4567777778888888776543334543 345666667889998886543221 112223 5688888754
No 447
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=28.18 E-value=1.4e+02 Score=20.05 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~ 129 (164)
.+.+.+++.+++.|++++.+... ...........++|+.+.++..
T Consensus 143 ~~a~~iq~~l~~iGi~v~i~~~~---~~~~~~~~~~~~~d~~~~~w~~ 187 (258)
T 3lvu_A 143 TVLEIYTRALERLGIAAQIEKVD---NAQYTARVAELDFDLTPFRRDL 187 (258)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEC---HHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCeeEEEecC---HHHHHHHhccCCccEEEecCCC
Confidence 34566777777789988876543 2344455577889999998753
No 448
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=28.16 E-value=1.2e+02 Score=19.29 Aligned_cols=38 Identities=13% Similarity=-0.133 Sum_probs=25.3
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
+++.|+++.-+. .+...++.+-.++.. ...+..+....
T Consensus 20 ~~~~iII~sHG~-~A~gl~~s~~~i~G~-~~~v~av~~~~ 57 (159)
T 3mtq_A 20 MKRHYIFASHGS-FANGLLNSVELILGK-QPDIHTLCAYV 57 (159)
T ss_dssp CCEEEEEEEETT-HHHHHHHHHHHHHCC-CTTEEEEEETS
T ss_pred cCceEEEEeCcH-HHHHHHHHHHHHcCC-CCCeEEEECCC
Confidence 467899999997 566666666555543 34677776544
No 449
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=28.05 E-value=88 Score=17.81 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhhcCc-eEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhc---CCCccEEEEe
Q 031202 82 EVLDILDTLSRTKGA-KVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVT---NSSCPVTVVK 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~---~~~~pVliv~ 157 (164)
...+.+.......|. .+. ...+. .+.++......+|++++...- ....+. ...+.+-. ...+|++++-
T Consensus 15 ~~~~~l~~~l~~~~~~~v~---~~~~~-~~a~~~~~~~~~dlvi~D~~l-~~~~g~---~l~~~l~~~~~~~~~~ii~~s 86 (128)
T 1jbe_A 15 TMRRIVRNLLKELGFNNVE---EAEDG-VDALNKLQAGGYGFVISDWNM-PNMDGL---ELLKTIRAXXAMSALPVLMVT 86 (128)
T ss_dssp HHHHHHHHHHHHTTCCCEE---EESSH-HHHHHHHTTCCCCEEEEESCC-SSSCHH---HHHHHHHC--CCTTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEE---eeCCH-HHHHHHHHhcCCCEEEEeCCC-CCCCHH---HHHHHHHhhcccCCCcEEEEe
Confidence 344455555555565 222 23343 444466677789999997542 111111 22343433 2357888875
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 87 ~~ 88 (128)
T 1jbe_A 87 AE 88 (128)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 450
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=28.00 E-value=1.6e+02 Score=20.75 Aligned_cols=70 Identities=9% Similarity=0.099 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
..+.+.+.+.+.+.|..+......++.. ..+++.....++|-||+...... . .... .+....+||+++-.
T Consensus 82 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----~~~~-~l~~~~iPvV~i~~ 153 (348)
T 3bil_A 82 AAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC--A-----NQLE-DLQKQGMPVVLVDR 153 (348)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG--H-----HHHH-HHHHC-CCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--h-----HHHH-HHHhCCCCEEEEcc
Confidence 3566677777777887776533333443 34566666778898887543211 0 1122 34456789888854
No 451
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.80 E-value=94 Score=18.06 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh-cCCCEEEEeecCCccccceeeccchhHHhcCC-CccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED-LKLDTLVVGSRGLGALKRVLLGSVSNHVVTNS-SCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~-~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~-~~pVliv~ 157 (164)
....+.+...+...|..+. ...+. .+.++..+. ..+|++++...-. ...+. .....+-... .+|++++-
T Consensus 25 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~~dlvilD~~l~-~~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 25 PSHATLIQYHLNQLGAEVT---VHPSG-SAFFQHRSQLSTCDLLIVSDQLV-DLSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESSH-HHHHHTGGGGGSCSEEEEETTCT-TSCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEE---EeCCH-HHHHHHHHhCCCCCEEEEeCCCC-CCCHH---HHHHHHHhhCCCCCEEEEE
Confidence 3445556666666676543 23444 444456666 7899999985422 11111 2233343333 58998886
No 452
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=27.72 E-value=83 Score=20.89 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=29.4
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhcc--CCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLID--SGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+. .|+++.++.-...
T Consensus 106 ~~DlvI~iS~SG~t~~~i~-~~~~ak~~~~Ga~vI~IT~~~~ 146 (220)
T 3etn_A 106 ENDLLLLISNSGKTREIVE-LTQLAHNLNPGLKFIVITGNPD 146 (220)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHHCTTCEEEEEESCTT
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHhcCCCCeEEEEECCCC
Confidence 4679999999988877665 5777888 8988877765433
No 453
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=27.59 E-value=40 Score=23.94 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE-Ee
Q 031202 111 LCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV-VK 157 (164)
Q Consensus 111 I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli-v~ 157 (164)
+++.+.+.+.|.|++|+.+-+.+... +..+...+=+..+.||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECC
Confidence 66777888999999993323211111 234455555558899999 87
No 454
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=27.58 E-value=1.4e+02 Score=20.10 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=36.3
Q ss_pred HHHHHH---HhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchh
Q 031202 84 LDILDT---LSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSN 143 (164)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~ 143 (164)
..++.+ ..++.|.++-..+.-+.+.+.+..+.....+|+|.+.+-.-+...+.+..+..+
T Consensus 100 ~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ 162 (227)
T 1tqx_A 100 TERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMG 162 (227)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHH
Confidence 444555 667778887765544577777777776334699988765444333334434333
No 455
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=27.58 E-value=1.3e+02 Score=19.54 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=47.6
Q ss_pred cCCCChhHHHHHHHHhhhcCceEEEEEe--eCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccc-hhHHhcCCCcc
Q 031202 76 GLTSNPEVLDILDTLSRTKGAKVVAKVY--WGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSV-SNHVVTNSSCP 152 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~-~~~v~~~~~~p 152 (164)
.....+++.+.+.+.+.+.|+++++..- +|...+.|-+... ++|-|||..-..+.. |+ ....+...++|
T Consensus 51 G~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~--~~dgIIINPgAyTHt------SvAlrDAL~~v~~P 122 (172)
T 3n8k_A 51 GGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAAD--AAEPVILNAGGLTHT------SVALRDACAELSAP 122 (172)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHH--HTCCEEEECGGGGGT------CHHHHHHHTTCCSC
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhh--cCcEEEECcchhhhh------hHHHHHHHHhCCCC
Confidence 3355677888888888899999886532 2344555544433 369999976544321 21 33456677899
Q ss_pred EEEEe
Q 031202 153 VTVVK 157 (164)
Q Consensus 153 Vliv~ 157 (164)
++=|.
T Consensus 123 ~VEVH 127 (172)
T 3n8k_A 123 LIEVH 127 (172)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98775
No 456
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=27.48 E-value=61 Score=23.64 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
....+.+.+..++.|+++.. +.....+ .+...+|++|++..
T Consensus 188 ~~~~~~~~~~l~~~gV~~~~----~~~v~~i---g~~~~~D~vv~a~G 228 (385)
T 3klj_A 188 RDGGLFLKDKLDRLGIKIYT----NSNFEEM---GDLIRSSCVITAVG 228 (385)
T ss_dssp HHHHHHHHHHHHTTTCEEEC----SCCGGGC---HHHHHHSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCEEEe----CCEEEEc---CeEEecCeEEECcC
Confidence 34555666777777877653 3222222 34556799998753
No 457
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=27.36 E-value=93 Score=20.09 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEee
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGS 127 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~ 127 (164)
..+.++..++..|++++.... +...++...+..++|+++.+.
T Consensus 41 ~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 82 (239)
T 3kbr_A 41 DVDMAQRLAESLGAKLVVVPT---SWPNLMRDFADDRFDIAMSGI 82 (239)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---CTTTHHHHHHTTCCSEECSSC
T ss_pred hHHHHHHHHHHHCCceEEEEe---CHHHHHHHHHCCCcCEEEeCC
Confidence 455566666777998887543 567778888899999986543
No 458
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=27.24 E-value=1.2e+02 Score=20.54 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=32.0
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEE
Q 031202 3 KARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v 40 (164)
..+.|+++++.+-..+....|..++.+.++.+++=+.-
T Consensus 149 ~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~vkvTRiA~ 186 (212)
T 3vdp_A 149 SVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAH 186 (212)
T ss_dssp CCSEEEECCCSSHHHHHHHHHHHHHHTTTTCEEEECCB
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHhhhcCCCeeeccc
Confidence 46789999999999999999999999988877765443
No 459
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=27.18 E-value=79 Score=24.03 Aligned_cols=48 Identities=10% Similarity=-0.017 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEeecCC----ccccc---eeeccchhHHhcCCCccE
Q 031202 106 DPREKLCDAVEDLKLDTLVVGSRGL----GALKR---VLLGSVSNHVVTNSSCPV 153 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dliv~g~~~~----~~~~~---~~~gs~~~~v~~~~~~pV 153 (164)
...+++++.|++.+.-+|+-.+.+. ++..+ ..|......++.++.+||
T Consensus 32 e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv 86 (450)
T 3txv_A 32 LVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPR 86 (450)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCc
Confidence 7889999999999887887766543 22211 235567778888889996
No 460
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=27.15 E-value=1.4e+02 Score=19.75 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
.+.++..+++.|++++.... +...+....+..++|+++-+
T Consensus 56 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 56 LELFSSYCQSRHCKLNITEY---AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp HHHHHHHHHHHTCEEEEEEC---CHHHHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHHhCCeEEEEEc---CHHHHHHHHhCCCCCEEEEC
Confidence 44555566667988886433 56778888889999998765
No 461
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=27.13 E-value=65 Score=20.97 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=21.8
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEe
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
+.|++.+||.+........+++.++..+..++.+.+-
T Consensus 111 ~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig 147 (213)
T 1pt6_A 111 KVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAIL 147 (213)
T ss_dssp EEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred eEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEec
Confidence 3466667876554333444555556667777766664
No 462
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=27.07 E-value=1.4e+02 Score=19.91 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++... ..++.....++|-||+......... ... .-+....+||+++-.
T Consensus 17 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 17 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG-----NAV-KMANQANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH-----HHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHH-HHHHHCCCcEEEecC
Confidence 45677777778888877765333345433 3455566778899888543221110 111 234456799998854
No 463
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=27.02 E-value=1.5e+02 Score=20.01 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+-+.+.+.+.|..+......+++.. ..++.....++|-||+......... ...+ .+....+||+++-.
T Consensus 18 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 91 (290)
T 2fn9_A 18 VVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSI-----ANVK-RAKEAGIPVFCVDR 91 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHHH-HHHHCCCeEEEEec
Confidence 45667777777888887765433345543 3455566678999988643221110 1122 34456799988854
No 464
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=26.97 E-value=35 Score=26.26 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=9.1
Q ss_pred HHHHhccCCCeEEEEEEe
Q 031202 24 AADNLIDSGDLIILIHVQ 41 (164)
Q Consensus 24 a~~la~~~~~~l~ll~v~ 41 (164)
|+..+.....-+.++|-.
T Consensus 19 a~~~~~~i~~~~~i~Hgp 36 (511)
T 2xdq_B 19 TLRIASSFKNVHGIMHAP 36 (511)
T ss_dssp HHHHHTTSTTEEEEEEEC
T ss_pred HHHHHhcCCCeEEEEECC
Confidence 344444455555555553
No 465
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=26.96 E-value=1.1e+02 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred CChhhHHHHHHHhcCCCEEEEeec
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.-+.+.|++.+++.++|+|.+...
T Consensus 166 ~vp~e~iv~aa~e~~~d~VglS~l 189 (262)
T 1xrs_B 166 QVANEDFIKKAVELEADVLLVSQT 189 (262)
T ss_dssp SBCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCHHHHHHHHHHcCCCEEEEEee
Confidence 358899999999999999999764
No 466
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=26.95 E-value=1.6e+02 Score=20.41 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhhc-CceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 82 EVLDILDTLSRTK-GAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
.....+.+.+.+. |..+......+++.. ..++.....++|-||+........ ..... .+....+||+++-.
T Consensus 22 ~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-----~~~~~-~~~~~~iPvV~~~~ 95 (325)
T 2x7x_A 22 KMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPM-----TPIVE-EAYQKGIPVILVDR 95 (325)
T ss_dssp HHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHH-----HHHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH-----HHHHH-HHHHCCCeEEEeCC
Confidence 4566677777777 887765433445433 345555667899998864321110 01122 23456789988854
No 467
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=26.90 E-value=93 Score=20.08 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=25.1
Q ss_pred cEEEEEecC---ChhhHHHHHHHHHH-hccCCCeEEEEEEeC
Q 031202 5 RTVGVGMDN---SPNSKAALRWAADN-LIDSGDLIILIHVQP 42 (164)
Q Consensus 5 ~~ILv~~d~---s~~s~~al~~a~~l-a~~~~~~l~ll~v~~ 42 (164)
.+|++.... ...+..+++++.+. +...+.++.++.+..
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~ 44 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVID 44 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGG
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 366665543 24577788877776 665677888887654
No 468
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=26.86 E-value=31 Score=25.03 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHhhhcCceEEEE------EeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEE
Q 031202 87 LDTLSRTKGAKVVAK------VYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVT 154 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~------v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVl 154 (164)
|...+.+.|..+... +..|+......+....+ +|.||+.+... ...+.+.+++.+||+
T Consensus 62 FE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~lA~~~~vPVI 125 (333)
T 1duv_G 62 FEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM-YDGIQYRGYGQ---------EIVETLAEYASVPVW 125 (333)
T ss_dssp HHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTT-CSEEEEECSCH---------HHHHHHHHHHSSCEE
T ss_pred HHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHh-CCEEEEEcCCc---------hHHHHHHHhCCCCeE
Confidence 344444556655443 12244445555555566 79999976532 246667888889986
No 469
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=26.74 E-value=1e+02 Score=18.00 Aligned_cols=72 Identities=6% Similarity=-0.034 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHh-----cCCCEEEEeecCCccccceeeccchhHHhc-----CCCc
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVED-----LKLDTLVVGSRGLGALKRVLLGSVSNHVVT-----NSSC 151 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~-----~~~dliv~g~~~~~~~~~~~~gs~~~~v~~-----~~~~ 151 (164)
.....+...+...+....+ ....+..+++ +..++ ..+|+|++...- ....+. .....+-. ...+
T Consensus 20 ~~~~~l~~~l~~~~~~~~v-~~~~~~~~a~-~~l~~~~~~~~~~dlvi~D~~l-~~~~g~---~~~~~l~~~~~~~~~~~ 93 (146)
T 3ilh_A 20 IVNFLNTTIIRMTHRVEEI-QSVTSGNAAI-NKLNELYAAGRWPSIICIDINM-PGINGW---ELIDLFKQHFQPMKNKS 93 (146)
T ss_dssp HHHHHHHHHHHTTCCEEEE-EEESSHHHHH-HHHHHHHTSSCCCSEEEEESSC-SSSCHH---HHHHHHHHHCGGGTTTC
T ss_pred HHHHHHHHHHHhcCCCeee-eecCCHHHHH-HHHHHhhccCCCCCEEEEcCCC-CCCCHH---HHHHHHHHhhhhccCCC
Confidence 4455666666666663332 2234444444 45555 789999998552 112111 12333433 3468
Q ss_pred cEEEEeCC
Q 031202 152 PVTVVKGN 159 (164)
Q Consensus 152 pVliv~~~ 159 (164)
|++++-..
T Consensus 94 ~ii~~t~~ 101 (146)
T 3ilh_A 94 IVCLLSSS 101 (146)
T ss_dssp EEEEECSS
T ss_pred eEEEEeCC
Confidence 88887543
No 470
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=26.71 E-value=2.5e+02 Score=22.64 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=28.4
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCC-CeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSG-DLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~-~~l~ll~v~~~~ 44 (164)
++++++++|.-+|..++..+.+ ..| .+++.+|+....
T Consensus 241 ~~vvv~lSGGvDSsVla~Ll~~---alG~~~V~aV~vd~g~ 278 (697)
T 2vxo_A 241 SKVLVLLSGGVDSTVCTALLNR---ALNQEQVIAVHIDNGF 278 (697)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH---HSCGGGEEEEEEECSC
T ss_pred cceEEEccCchHHHHHHHHHHH---hcCCceEEEEEecccc
Confidence 6899999999998776666544 345 789999998664
No 471
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=26.55 E-value=70 Score=21.03 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=22.8
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQP 42 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
+.|++.+||.+.....+..+++.++..+..++.+.+-.
T Consensus 126 ~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG~ 163 (223)
T 2b2x_A 126 KVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILG 163 (223)
T ss_dssp EEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECG
T ss_pred eEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecC
Confidence 34666667765543334445555666777777777743
No 472
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.43 E-value=1.5e+02 Score=20.00 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhhhcCceEEEE-EeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAK-VYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|..+... ...+++. ...++.....++|-||+....... ...+ .+....+||+++-
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~-~l~~~~iPvV~~~ 95 (290)
T 3clk_A 24 QQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTD-------DNLQ-LLQSSDVPYCFLS 95 (290)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-----------CHH-HHHCC--CEEEES
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCH-------HHHH-HHHhCCCCEEEEc
Confidence 466777777788888776653 2223332 345666667789998886432211 1223 3456788988885
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 96 ~ 96 (290)
T 3clk_A 96 M 96 (290)
T ss_dssp C
T ss_pred C
Confidence 4
No 473
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=26.41 E-value=1.8e+02 Score=20.72 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhh------cCceEEEEEeeC-C--hhhHHHHHHHhcCCCEEEEeec
Q 031202 82 EVLDILDTLSRT------KGAKVVAKVYWG-D--PREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 82 ~~~~~~~~~~~~------~~~~~~~~v~~g-~--~~~~I~~~a~~~~~dliv~g~~ 128 (164)
+.++.+++.... .++.+-.++..+ + -..++.+.+.+.++|.|++..+
T Consensus 192 ~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 192 DLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 445555554432 156776665443 2 2356678888999999999654
No 474
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=26.39 E-value=1.7e+02 Score=20.59 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
..+.+.+.+.+.+.|..+.......+.. ..+++.....++|-||+...... ...-..+....+||+++-
T Consensus 86 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 86 AQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT--------EQTIRLLQRASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC--------HHHHHHHHHCCSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC--------HHHHHHHHhCCCCEEEEC
Confidence 4567777888888898876543334443 45667777788999988643221 112234566789999883
No 475
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=26.30 E-value=2.1e+02 Score=21.49 Aligned_cols=34 Identities=6% Similarity=-0.119 Sum_probs=15.6
Q ss_pred EEEEEecCChhhHHHHHHHHHHhccCCCeEEEEE
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLIDSGDLIILIH 39 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~ 39 (164)
+|-+..+.+++.+..++...+.++..|..+....
T Consensus 187 ~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~ 220 (479)
T 3sm9_A 187 YVSTVASEGDYGETGIEAFEQEARLRNISIATAE 220 (479)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEEecchhhHHHHHHHHHHHHHCCceEEEEE
Confidence 4444444444444444444444444444444333
No 476
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=26.20 E-value=1.7e+02 Score=20.44 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhh--HHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPRE--KLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
....+-+.+.+.+.|..+......+++.. ..++.....++|-||+....... .....+....++||+++-.
T Consensus 74 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~l~~~~~iPvV~~~~ 146 (340)
T 1qpz_A 74 AEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMDW 146 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCH-------HHHHHHHTTTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh-------HHHHHHHhhCCCCEEEEec
Confidence 45677777788888887765333345443 35666667889999885432210 1122222236799888853
No 477
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=26.19 E-value=1.1e+02 Score=21.59 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeC
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKG 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~ 158 (164)
++-++.+.+.+++.|+.+-+.+..-.-. +++.+. +|++=+|+..-..+. ...++. ...+||++=+.
T Consensus 77 ~~GL~~L~~~~~e~Glp~~Tev~d~~~v----~~l~~~-vd~lqIgA~~~~n~~------LLr~va-~~gkPVilK~G 142 (285)
T 3sz8_A 77 DEGLKIFAEVKARFGVPVITDVHEAEQA----APVAEI-ADVLQVPAFLARQTD------LVVAIA-KAGKPVNVKKP 142 (285)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCSGGGH----HHHHTT-CSEEEECGGGTTCHH------HHHHHH-HTSSCEEEECC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHH----HHHHHh-CCEEEECccccCCHH------HHHHHH-ccCCcEEEeCC
Confidence 4567778888999999998876543322 344455 788888875433222 233333 35677766444
No 478
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=26.15 E-value=47 Score=24.35 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEE
Q 031202 105 GDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTV 155 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVli 155 (164)
|+......+....+ +|.||+.+... ...+.+.+.+.+||+=
T Consensus 112 gEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~la~~s~vPVIN 152 (358)
T 4h31_A 112 KESMKDTARVLGRM-YDGIQYRGFGQ---------AIVEELGAFAGVPVWN 152 (358)
T ss_dssp TBCHHHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHHSSSCEEE
T ss_pred ccchhHHHHHhhcc-CceeEecccch---------hHHHHhhhhccCceEC
Confidence 54555556666667 79999975532 3467788889999763
No 479
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=26.12 E-value=1.1e+02 Score=19.71 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 84 LDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
.+.++..+++.|++++.+. . +...++...+..++|+++-+
T Consensus 31 ~dl~~~i~~~~g~~~~~~~--~-~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 31 IDLGNEMCKRMQVKCTWVA--S-DFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp HHHHHHHHHHHTCEEEEEE--C-CGGGHHHHHHTTSCSEECSS
T ss_pred HHHHHHHHHHHCCeEEEEe--C-CHHHHHHHHhCCCCCEEEEC
Confidence 4555556666788888654 2 56778888899999998753
No 480
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=26.12 E-value=1.6e+02 Score=20.03 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=44.1
Q ss_pred hhHHHHHHHHhhhcCc-eEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGA-KVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|. ++......++.. ...++.....++|-||+........ .... ..+....+||+++-
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-----~~~~-~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 18 SVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA-----GTVI-EKARGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH-----HHHH-HHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh-----HHHH-HHHHHCCCcEEEec
Confidence 4567777788888886 666533334543 3456666678899999864322111 1112 23456789999886
Q ss_pred CC
Q 031202 158 GN 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 92 ~~ 93 (309)
T 2fvy_A 92 KE 93 (309)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 481
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=26.11 E-value=68 Score=19.23 Aligned_cols=34 Identities=6% Similarity=-0.109 Sum_probs=15.6
Q ss_pred cEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 5 RTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|. -....+...++... +.. .+.++.+....
T Consensus 5 ~~vlIi-GaG~~g~~l~~~l~---~~~--g~~vvg~~d~~ 38 (141)
T 3nkl_A 5 KKVLIY-GAGSAGLQLANMLR---QGK--EFHPIAFIDDD 38 (141)
T ss_dssp EEEEEE-CCSHHHHHHHHHHH---HSS--SEEEEEEECSC
T ss_pred CEEEEE-CCCHHHHHHHHHHH---hCC--CcEEEEEEECC
Confidence 455543 33344444444432 222 35566666543
No 482
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=26.10 E-value=1.3e+02 Score=19.97 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEE
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVV 125 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~ 125 (164)
-..+.++..++..|++++.... +...++...+...+|+++-
T Consensus 46 ~~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 46 FDIDLANAVFKLYGIDVEWQAI---DWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEC---CGGGHHHHHHHTSCSEECS
T ss_pred ehHHHHHHHHHHhCCcEEEEEC---CHHHHHHHHHCCCCCEEEe
Confidence 3455666667777998887543 3777888888999998873
No 483
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=26.00 E-value=93 Score=21.05 Aligned_cols=80 Identities=8% Similarity=-0.054 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHHHhhhhhhhcCCCChhHHHHHHHHhhhcCc
Q 031202 17 SKAALRWAADNLIDSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFREINFSKQYGLTSNPEVLDILDTLSRTKGA 96 (164)
Q Consensus 17 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
....+..++++|+..|++..+++.. .+.. ..... ..+...+.+..+.+.+.+.|+
T Consensus 91 ~~~~~~~~i~~A~~lGa~~v~~~~g-~~~~--------------~~~~~----------~~~~~~~~l~~l~~~a~~~Gv 145 (269)
T 3ngf_A 91 FRDNVDIALHYALALDCRTLHAMSG-ITEG--------------LDRKA----------CEETFIENFRYAADKLAPHGI 145 (269)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCBC-BCTT--------------SCHHH----------HHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccC-CCCC--------------CCHHH----------HHHHHHHHHHHHHHHHHHcCC
Confidence 3456788899999999988776543 1100 00000 001234556666677777788
Q ss_pred eEEEEEee-----C---ChhhHHHHHHHhcCCC
Q 031202 97 KVVAKVYW-----G---DPREKLCDAVEDLKLD 121 (164)
Q Consensus 97 ~~~~~v~~-----g---~~~~~I~~~a~~~~~d 121 (164)
.+..+-.. + ...+.+.+.++..+.+
T Consensus 146 ~l~lE~~n~~~~~~~~~~~~~~~~~l~~~v~~~ 178 (269)
T 3ngf_A 146 TVLVEPLNTRNMPGYFIVHQLEAVGLVKRVNRP 178 (269)
T ss_dssp EEEECCCCTTTSTTBSCCCHHHHHHHHHHHCCT
T ss_pred EEEEeeCCcccCccchhcCHHHHHHHHHHhCCC
Confidence 87766311 1 2345566666665433
No 484
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=25.95 E-value=1.5e+02 Score=19.88 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeCChh--hHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcC-CCccEEEEe
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWGDPR--EKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTN-SSCPVTVVK 157 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~-~~~pVliv~ 157 (164)
....+.+.+.+.+.|.++......+++. ...++.....++|-||+....... ..... +.. .++||+++-
T Consensus 37 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-------~~~~~-l~~~~~iPvV~~~ 108 (296)
T 3brq_A 37 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDD-IIDAHSQPIMVLN 108 (296)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-------HHHHH-HHHTCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-------HHHHH-HHhcCCCCEEEEc
Confidence 4566777777777888776433233443 335555566788988885432211 11233 344 678988875
Q ss_pred C
Q 031202 158 G 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 109 ~ 109 (296)
T 3brq_A 109 R 109 (296)
T ss_dssp C
T ss_pred c
Confidence 4
No 485
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=25.94 E-value=1.1e+02 Score=19.87 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
-..+.++..++..|++++.+.. +...++...+..++|+++.+
T Consensus 30 ~~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 30 FERELGDELCKRAGLTCEWVKN---DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEC---CGGGHHHHHHTTSCSEECSS
T ss_pred ehHHHHHHHHHHcCCceEEEEC---CHHHHHHHHHCCCCCEEEeC
Confidence 3455566666677999887542 57778888899999987654
No 486
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=25.81 E-value=44 Score=21.68 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=30.5
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPPN 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+.++|.++.|..+...++ +++.|+..|+++.++.-....
T Consensus 92 ~~dvvI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 92 KEDILILISKGGNTGELLN-LIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp TTCEEEEECSSSCCHHHHT-THHHHHHHTCEEEEEESCTTS
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHcCCeEEEEECCCCC
Confidence 4689999999988877665 677788889988777654443
No 487
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=25.67 E-value=1.1e+02 Score=21.13 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=26.4
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeec
Q 031202 85 DILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~ 128 (164)
.++.+..++.|.++-..+.-+.+.+.+..+... +|+|.+.+-
T Consensus 124 ~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~--vD~VlvMsV 165 (246)
T 3inp_A 124 DRSLQLIKSFGIQAGLALNPATGIDCLKYVESN--IDRVLIMSV 165 (246)
T ss_dssp HHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGG--CSEEEEECS
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhc--CCEEEEeee
Confidence 344455566777776655445677777666664 477776554
No 488
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=25.62 E-value=1.2e+02 Score=19.58 Aligned_cols=41 Identities=5% Similarity=0.084 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcC-ceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 83 VLDILDTLSRTKG-AKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
..+.++..+++.| ++++.... +...++...+...+|+++-+
T Consensus 33 ~~dl~~~i~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 74 (246)
T 4eq9_A 33 EIEVVRAIFKDSDKYDVKFEKT---EWSGVFAGLDADRYNMAVNN 74 (246)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEC---CHHHHHHHHHTTSCSEECSS
T ss_pred HHHHHHHHHHHcCCceEEEEeC---CHHHHHHHHhCCCcCEEecc
Confidence 4556666777778 88886543 57778888899999997644
No 489
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=25.56 E-value=74 Score=21.69 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=25.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEE
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIIL 37 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~l 37 (164)
+++|.+++|.+...+.+...+...... + ++.+
T Consensus 199 ~~~iil~~D~D~aG~~aa~~~~~~l~~-~-~v~~ 230 (255)
T 1nui_A 199 FEQIILMFDMDEAGRKAVEEAAQVLPA-G-KVRV 230 (255)
T ss_dssp BSCEEEECCSSHHHHHHHHHHHHHSCT-T-TEEE
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhccC-C-CEEE
Confidence 578999999999999888888877654 3 4443
No 490
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=25.56 E-value=1e+02 Score=22.33 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=30.2
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMDNSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+.++|.++.|..+...++ +++.|+..|+++..+.-...
T Consensus 97 ~~dlvI~iS~SG~T~e~l~-a~~~Ak~~Ga~~iaIT~~~~ 135 (367)
T 2poc_A 97 RDDTCVFVSQSGETADSIL-ALQYCLERGALTVGIVNSVG 135 (367)
T ss_dssp TTEEEEEEESSSCCHHHHH-HHHHHHHTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEEECCCC
Confidence 4679999999988887776 67788888988777665443
No 491
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=25.50 E-value=1.9e+02 Score=21.16 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHhhhcCceEEEEEe-eCChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 80 NPEVLDILDTLSRTKGAKVVAKVY-WGDPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
.+..++.++......++++-.+.. .| ...+..+.+.+.++|.|+++.++.+
T Consensus 191 ~~~~~~~I~~l~~~~~~PVivK~vg~g-~s~e~A~~l~~aGad~I~V~g~GGt 242 (365)
T 3sr7_A 191 FRSWKKHLSDYAKKLQLPFILKEVGFG-MDVKTIQTAIDLGVKTVDISGRGGT 242 (365)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEECSSC-CCHHHHHHHHHHTCCEEECCCBC--
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCC-CCHHHHHHHHHcCCCEEEEeCCCCc
Confidence 334556666666666777776632 23 3445677788899999999766443
No 492
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=25.45 E-value=1.3e+02 Score=18.96 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=31.0
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
-..+.++..++..|++++.... +...+.+..+..++|+++-+
T Consensus 27 ~~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 68 (227)
T 3tql_A 27 FGADIVKAVCKQMQAVCTISNQ---PWDSLIPSLKLGKFDALFGG 68 (227)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEC---CHHHHHHHHHHTSCSEECSS
T ss_pred chHHHHHHHHHHhCCeEEEEeC---CHHHHHHHHhCCCCCEEEec
Confidence 3455666677777999887542 57778888899999998644
No 493
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=25.43 E-value=1.4e+02 Score=19.36 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=27.7
Q ss_pred CcEEEEEec-CChhhHHHHHHHHHHhccCCCeEEEEEEeCC
Q 031202 4 ARTVGVGMD-NSPNSKAALRWAADNLIDSGDLIILIHVQPP 43 (164)
Q Consensus 4 ~~~ILv~~d-~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+.+||+... ....+..+++..++-+...+..+.++.+.+.
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 346666553 3455677777777777767888888887664
No 494
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=25.38 E-value=1.9e+02 Score=20.66 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred HHHHHhhhcCceEEEEEeeCCh-hhHHHHHHHhcCCCEEEEeecC
Q 031202 86 ILDTLSRTKGAKVVAKVYWGDP-REKLCDAVEDLKLDTLVVGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~g~~-~~~I~~~a~~~~~dliv~g~~~ 129 (164)
-+.+.+.++|+.+-. -.+. .+++.+..++.++|++|+...+
T Consensus 49 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 49 PVKEIARQNEIPIIQ---PFSLRDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp HHHHHHHHTTCCEEC---CSCSSSHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHcCCCEEC---cccCCCHHHHHHHHhcCCCEEEEcCcc
Confidence 456677778988542 1221 2478889999999999998664
No 495
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=25.34 E-value=95 Score=17.30 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEEeCC
Q 031202 82 EVLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVVKGN 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv~~~ 159 (164)
...+.+.......|..+. ...+..+ .++..+...+|++++...- ....+. .....+-...++|++++-..
T Consensus 12 ~~~~~l~~~l~~~~~~v~---~~~~~~~-a~~~~~~~~~dlvl~D~~l-~~~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 12 PISDIIKFNMTKEGYEVV---TAFNGRE-ALEQFEAEQPDIIILDLML-PEIDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSHHH-HHHHHHHHCCSEEEECSSC-SSSCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHHHhcCcEEE---EecCHHH-HHHHHHhCCCCEEEEeccC-CCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 334455555555676543 2334434 4455566789999997542 111111 23344444456899888543
No 496
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=25.28 E-value=55 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=20.9
Q ss_pred EeeC-ChhhHHHHHHHhcCCCEEEEe
Q 031202 102 VYWG-DPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 102 v~~g-~~~~~I~~~a~~~~~dliv~g 126 (164)
+..+ |+...++.+|.+.++|+||--
T Consensus 41 IlvaLD~t~~vv~eA~~~g~dlIItH 66 (278)
T 3rxy_A 41 VMMGIDIGPAELLLARQLGCDGVIAH 66 (278)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred EEEEECCCHHHHHHHHHcCCCEEEEC
Confidence 3344 889999999999999999874
No 497
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=25.28 E-value=1.1e+02 Score=18.11 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=26.4
Q ss_pred hhHHHHHHHHhhhcCceEEEEEeeC-ChhhHHHHHHHhcCCCEEEEeecCCc
Q 031202 81 PEVLDILDTLSRTKGAKVVAKVYWG-DPREKLCDAVEDLKLDTLVVGSRGLG 131 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliv~g~~~~~ 131 (164)
+++.+.+.+.+...|++++..-... ++ + .-.++|.||+|.....
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~-~------~l~~~d~iiig~pty~ 57 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVNI-D------ELLNEDILILGCSAMT 57 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCCH-H------HHTTCSEEEEEECCBT
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCCH-H------HHhhCCEEEEEcCccC
Confidence 4566666777777787776542222 22 1 2245699999976543
No 498
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=25.14 E-value=1.9e+02 Score=20.54 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeC-----Ch--hhHHHHHHHhcCCCEEEEeecCCccccceeeccchhHHhcCCCccEEEE
Q 031202 84 LDILDTLSRTKGAKVVAKVYWG-----DP--REKLCDAVEDLKLDTLVVGSRGLGALKRVLLGSVSNHVVTNSSCPVTVV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~g-----~~--~~~I~~~a~~~~~dliv~g~~~~~~~~~~~~gs~~~~v~~~~~~pVliv 156 (164)
..++.+.|+++|+.+-.....| ++ .....+.+.+.++|+|-....+ ..-++++..+++||++.
T Consensus 160 i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~----------e~~~~vv~~~~vPVv~~ 229 (295)
T 3glc_A 160 IIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE----------KGFERIVAGCPVPIVIA 229 (295)
T ss_dssp HHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT----------TTHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH----------HHHHHHHHhCCCcEEEE
Confidence 4466677777787765432221 21 2335677889999998887321 12367888889999876
Q ss_pred eC
Q 031202 157 KG 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 230 GG 231 (295)
T 3glc_A 230 GG 231 (295)
T ss_dssp CC
T ss_pred EC
Confidence 54
No 499
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=25.06 E-value=1.4e+02 Score=19.00 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhcCceEEEEEeeCChhhHHHHHHHhcCCCEEEEe
Q 031202 83 VLDILDTLSRTKGAKVVAKVYWGDPREKLCDAVEDLKLDTLVVG 126 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliv~g 126 (164)
..+.++..+++.|++++.... +...+....+...+|+++-+
T Consensus 32 ~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 32 DIDVANAVCKEMQAECSFTNQ---SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---CGGGHHHHHHTTSCSEECSS
T ss_pred eHHHHHHHHHHhCCeEEEEEc---CHHHHHHHHhCCCceEEEec
Confidence 345556666677998887542 56677888889999988733
No 500
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=24.95 E-value=1.9e+02 Score=20.68 Aligned_cols=91 Identities=8% Similarity=0.029 Sum_probs=56.4
Q ss_pred EEEEEecCChhhHHHHHHHHHHhc------------------cCCCeEEEEEEeCCCCCcccccccccCCCCCCChhhHH
Q 031202 6 TVGVGMDNSPNSKAALRWAADNLI------------------DSGDLIILIHVQPPNADHTRKQLFEDTGSPLVPLEEFR 67 (164)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~------------------~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (164)
++.+..+|..++..++..+..... ....++-++++.....+
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~F--------------------- 118 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTF--------------------- 118 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCC---------------------
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCC---------------------
Confidence 588999999999988887766421 01246788888766543
Q ss_pred HhhhhhhhcCCCChhHHHHHHHHhhhcCceEEEEEee-C-ChhhHHHHHHHhc-CCCEEEEeecCC
Q 031202 68 EINFSKQYGLTSNPEVLDILDTLSRTKGAKVVAKVYW-G-DPREKLCDAVEDL-KLDTLVVGSRGL 130 (164)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-g-~~~~~I~~~a~~~-~~dliv~g~~~~ 130 (164)
.+..+...+...+.|+++....-. + ...+...++.+.. +++.++.|.+..
T Consensus 119 -------------pET~ef~d~~~~~ygL~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 119 -------------KTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp -------------HHHHHHHHHHHHHTTEEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred -------------HHHHHHHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 355556666666778876642111 1 2335566666655 589999997754
Done!