Query 031203
Match_columns 164
No_of_seqs 106 out of 1076
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0181 20S proteasome, regula 100.0 3.4E-40 7.3E-45 242.0 14.9 155 1-160 79-233 (233)
2 cd03750 proteasome_alpha_type_ 100.0 6.8E-39 1.5E-43 248.0 20.4 154 1-158 74-227 (227)
3 KOG0183 20S proteasome, regula 100.0 9.1E-40 2E-44 242.8 14.2 158 1-161 77-234 (249)
4 PTZ00246 proteasome subunit al 100.0 1.8E-38 3.9E-43 249.2 21.2 160 1-162 79-243 (253)
5 KOG0182 20S proteasome, regula 100.0 1.3E-38 2.8E-43 236.2 18.3 164 1-164 83-246 (246)
6 COG0638 PRE1 20S proteasome, a 100.0 4.7E-38 1E-42 244.4 20.7 157 1-163 78-235 (236)
7 PRK03996 proteasome subunit al 100.0 9E-38 1.9E-42 243.6 20.8 157 1-160 83-239 (241)
8 KOG0178 20S proteasome, regula 100.0 1.1E-37 2.4E-42 231.2 18.0 162 1-163 79-243 (249)
9 KOG0176 20S proteasome, regula 100.0 2.3E-37 5.1E-42 227.5 15.9 155 1-159 81-240 (241)
10 TIGR03690 20S_bact_beta protea 100.0 1.8E-36 3.9E-41 233.3 19.2 157 1-162 50-216 (219)
11 cd03758 proteasome_beta_type_2 100.0 4.1E-36 8.8E-41 227.3 18.2 138 1-142 49-187 (193)
12 cd03754 proteasome_alpha_type_ 100.0 4.3E-36 9.3E-41 230.6 17.8 138 1-138 76-215 (215)
13 cd03749 proteasome_alpha_type_ 100.0 6E-36 1.3E-40 229.2 18.2 138 1-139 72-211 (211)
14 TIGR03633 arc_protsome_A prote 100.0 1.1E-35 2.4E-40 229.6 18.4 148 1-152 76-224 (224)
15 PTZ00488 Proteasome subunit be 100.0 3.9E-35 8.5E-40 229.3 19.2 151 1-162 87-240 (247)
16 cd03760 proteasome_beta_type_4 100.0 2.8E-35 6E-40 223.3 17.4 140 1-142 50-191 (197)
17 cd03752 proteasome_alpha_type_ 100.0 3.4E-35 7.4E-40 225.3 17.8 136 1-138 77-213 (213)
18 cd03751 proteasome_alpha_type_ 100.0 3.2E-35 7E-40 225.3 17.7 135 1-138 77-212 (212)
19 cd03755 proteasome_alpha_type_ 100.0 4.2E-35 9E-40 223.9 17.5 134 1-138 74-207 (207)
20 KOG0863 20S proteasome, regula 100.0 7E-35 1.5E-39 218.7 17.7 160 1-162 77-238 (264)
21 TIGR03691 20S_bact_alpha prote 100.0 8E-35 1.7E-39 225.1 18.3 154 1-157 67-228 (228)
22 cd03761 proteasome_beta_type_5 100.0 1.3E-34 2.8E-39 218.2 17.9 139 1-148 48-187 (188)
23 cd03759 proteasome_beta_type_3 100.0 1.1E-34 2.4E-39 219.7 17.3 141 1-147 51-193 (195)
24 cd03765 proteasome_beta_bacter 100.0 9.5E-35 2.1E-39 225.3 17.2 140 1-143 51-202 (236)
25 cd03756 proteasome_alpha_arche 100.0 7.6E-34 1.7E-38 217.5 17.9 136 1-139 75-210 (211)
26 cd03757 proteasome_beta_type_1 100.0 2E-33 4.3E-38 215.4 17.5 139 1-143 56-202 (212)
27 TIGR03634 arc_protsome_B prote 100.0 3.1E-33 6.8E-38 209.9 17.5 134 2-142 50-184 (185)
28 cd03764 proteasome_beta_archea 100.0 5.8E-33 1.3E-37 209.0 18.3 139 1-148 48-187 (188)
29 cd03753 proteasome_alpha_type_ 100.0 7.4E-33 1.6E-37 212.3 17.0 135 1-138 74-213 (213)
30 cd01911 proteasome_alpha prote 100.0 1.1E-32 2.4E-37 210.7 17.4 136 1-138 74-209 (209)
31 cd03763 proteasome_beta_type_7 100.0 1.7E-32 3.6E-37 206.8 18.0 139 1-149 48-187 (189)
32 cd03762 proteasome_beta_type_6 100.0 2.9E-32 6.3E-37 205.2 17.8 135 1-142 48-183 (188)
33 cd01912 proteasome_beta protea 100.0 1.1E-31 2.3E-36 202.0 17.2 136 1-142 48-184 (189)
34 PF00227 Proteasome: Proteasom 100.0 1.9E-31 4E-36 200.4 17.1 136 1-138 53-190 (190)
35 KOG0184 20S proteasome, regula 100.0 4.5E-31 9.7E-36 197.3 15.0 155 1-158 81-236 (254)
36 cd01906 proteasome_protease_Hs 100.0 1.2E-30 2.6E-35 194.8 17.1 134 1-138 48-182 (182)
37 KOG0175 20S proteasome, regula 100.0 2.9E-28 6.2E-33 185.6 12.4 151 2-161 120-271 (285)
38 KOG0177 20S proteasome, regula 99.9 5.5E-26 1.2E-30 166.3 12.9 138 2-143 50-188 (200)
39 KOG0179 20S proteasome, regula 99.9 5.2E-25 1.1E-29 163.5 14.3 144 1-148 77-230 (235)
40 KOG0174 20S proteasome, regula 99.9 9.7E-25 2.1E-29 160.4 10.8 150 2-158 68-218 (224)
41 KOG0173 20S proteasome, regula 99.9 7.7E-23 1.7E-27 155.7 13.9 134 2-143 86-220 (271)
42 KOG0180 20S proteasome, regula 99.9 4.1E-22 8.9E-27 144.2 13.3 137 1-143 56-194 (204)
43 cd01901 Ntn_hydrolase The Ntn 99.9 2.1E-21 4.7E-26 140.7 15.5 115 1-121 48-163 (164)
44 KOG0185 20S proteasome, regula 99.8 2.2E-19 4.9E-24 135.6 9.7 148 2-153 90-240 (256)
45 cd01913 protease_HslV Protease 99.8 3.1E-18 6.7E-23 126.6 13.0 115 2-136 50-169 (171)
46 PRK05456 ATP-dependent proteas 99.8 5E-18 1.1E-22 126.1 12.8 117 2-137 51-171 (172)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.7 2.2E-17 4.7E-22 122.2 11.9 116 2-136 50-169 (171)
48 COG3484 Predicted proteasome-t 97.3 0.00065 1.4E-08 51.4 5.2 113 27-142 79-202 (255)
49 COG5405 HslV ATP-dependent pro 96.1 0.09 1.9E-06 38.6 9.2 105 2-124 54-160 (178)
50 KOG3361 Iron binding protein i 87.6 1.2 2.7E-05 31.6 4.3 44 70-115 71-114 (157)
51 PF03646 FlaG: FlaG protein; 81.1 6.2 0.00014 26.6 5.5 33 130-162 65-98 (107)
52 PRK08868 flagellar protein Fla 79.1 13 0.00028 26.8 6.8 34 129-162 98-132 (144)
53 PF09894 DUF2121: Uncharacteri 76.8 13 0.00027 28.2 6.4 50 90-141 130-180 (194)
54 PRK07738 flagellar protein Fla 75.8 19 0.0004 25.1 6.6 33 130-162 74-107 (117)
55 PRK08452 flagellar protein Fla 73.1 24 0.00052 24.8 6.7 33 130-162 81-114 (124)
56 PF00178 Ets: Ets-domain; Int 69.3 13 0.00028 24.3 4.4 26 135-160 21-46 (85)
57 smart00413 ETS erythroblast tr 69.1 8.1 0.00018 25.5 3.4 26 134-159 20-45 (87)
58 PF07499 RuvA_C: RuvA, C-termi 67.9 3.5 7.5E-05 23.7 1.3 34 85-119 12-45 (47)
59 PF11211 DUF2997: Protein of u 60.1 22 0.00047 20.6 3.7 32 70-101 3-34 (48)
60 COG1334 FlaG Uncharacterized f 57.5 55 0.0012 22.9 6.0 52 111-162 49-110 (120)
61 COG4079 Uncharacterized protei 56.7 31 0.00068 27.3 5.1 63 90-154 131-194 (293)
62 KOG3806 Predicted transcriptio 56.3 16 0.00035 27.3 3.3 24 135-158 88-111 (177)
63 KOG2599 Pyridoxal/pyridoxine/p 53.9 1.2E+02 0.0025 24.6 10.3 106 15-126 151-263 (308)
64 PF06057 VirJ: Bacterial virul 53.8 24 0.00051 26.8 4.0 35 24-62 42-76 (192)
65 COG4245 TerY Uncharacterized p 53.6 37 0.00079 25.9 4.9 44 111-154 22-66 (207)
66 PF04539 Sigma70_r3: Sigma-70 49.5 44 0.00096 20.6 4.3 33 9-41 3-35 (78)
67 PF05113 DUF693: Protein of un 45.7 67 0.0014 25.9 5.4 60 55-117 98-158 (314)
68 PF14804 Jag_N: Jag N-terminus 44.6 35 0.00077 20.0 3.0 29 106-140 4-32 (52)
69 PF11773 PulG: Type II secreto 43.8 32 0.0007 22.4 2.9 42 107-150 34-75 (82)
70 COG1754 Uncharacterized C-term 43.7 15 0.00032 29.6 1.6 54 59-116 78-133 (298)
71 PF03928 DUF336: Domain of unk 43.7 32 0.00069 24.0 3.2 35 106-143 2-36 (132)
72 cd06404 PB1_aPKC PB1 domain is 43.3 92 0.002 20.3 6.3 53 104-161 17-69 (83)
73 TIGR03342 dsrC_tusE_dsvC sulfu 43.0 80 0.0017 21.6 4.9 36 1-40 38-73 (108)
74 PRK11508 sulfur transfer prote 41.9 76 0.0017 21.8 4.7 35 1-39 39-73 (109)
75 COG4537 ComGC Competence prote 41.2 58 0.0012 22.1 3.8 28 5-32 49-77 (107)
76 PRK05756 pyridoxamine kinase; 40.1 44 0.00096 26.3 3.8 53 84-139 216-268 (286)
77 PF08289 Flu_M1_C: Influenza M 40.0 90 0.0019 20.4 4.5 47 2-48 42-88 (95)
78 KOG2201 Pantothenate kinase Pa 39.1 93 0.002 25.8 5.5 57 56-119 176-232 (371)
79 PRK09778 putative antitoxin of 37.4 55 0.0012 21.9 3.3 31 132-162 25-55 (97)
80 PRK14602 ruvA Holliday junctio 35.5 74 0.0016 24.2 4.3 38 84-121 163-200 (203)
81 KOG3087 Serine/threonine prote 35.1 1.6E+02 0.0034 22.8 5.8 34 65-101 73-106 (229)
82 COG3193 GlcG Uncharacterized p 34.4 1.5E+02 0.0033 21.3 5.4 37 104-143 5-41 (141)
83 PRK14603 ruvA Holliday junctio 34.4 62 0.0013 24.5 3.6 37 84-120 160-196 (197)
84 PRK12413 phosphomethylpyrimidi 33.1 79 0.0017 24.2 4.2 40 84-126 203-242 (253)
85 PRK13145 araD L-ribulose-5-pho 32.8 1.4E+02 0.003 23.2 5.5 47 107-153 1-57 (234)
86 PRK09732 hypothetical protein; 32.5 1.8E+02 0.004 20.6 5.8 37 104-143 4-40 (134)
87 TIGR00687 pyridox_kin pyridoxa 32.4 81 0.0017 24.8 4.2 39 86-127 219-257 (286)
88 PRK08176 pdxK pyridoxal-pyrido 31.6 69 0.0015 25.3 3.7 41 83-126 226-266 (281)
89 PF05593 RHS_repeat: RHS Repea 31.6 70 0.0015 17.0 2.7 22 66-87 5-26 (38)
90 PF03681 UPF0150: Uncharacteri 31.1 61 0.0013 18.1 2.5 17 108-124 30-46 (48)
91 TIGR03544 DivI1A_domain DivIVA 30.4 49 0.0011 17.4 1.8 17 146-162 16-32 (34)
92 PF01458 UPF0051: Uncharacteri 30.4 90 0.002 23.8 4.1 47 67-120 183-229 (229)
93 smart00759 Flu_M1_C Influenza 30.1 1.6E+02 0.0035 19.3 4.6 45 2-46 42-86 (95)
94 cd01947 Guanosine_kinase_like 30.1 2.5E+02 0.0054 21.4 6.7 62 53-121 189-256 (265)
95 PHA03324 nuclear egress membra 30.0 2.7E+02 0.0058 21.7 6.6 68 23-90 49-118 (274)
96 cd01173 pyridoxal_pyridoxamine 29.3 99 0.0022 23.7 4.2 41 83-126 211-251 (254)
97 PF00159 Hormone_3: Pancreatic 28.8 1.1E+02 0.0023 16.7 3.2 22 24-45 9-30 (36)
98 PF05589 DUF768: Protein of un 28.5 1.5E+02 0.0032 18.3 3.9 38 88-125 4-41 (64)
99 cd01937 ribokinase_group_D Rib 28.3 2.6E+02 0.0057 21.1 7.2 38 83-123 215-252 (254)
100 PF09702 Cas_Csa5: CRISPR-asso 28.2 2E+02 0.0043 19.6 5.6 57 106-162 17-87 (105)
101 KOG1523 Actin-related protein 27.8 60 0.0013 26.8 2.7 45 55-101 262-308 (361)
102 COG5418 Predicted secreted pro 27.6 2.1E+02 0.0044 20.9 5.1 41 30-76 80-120 (164)
103 smart00309 PAH Pancreatic horm 27.6 1.1E+02 0.0024 16.6 3.2 21 24-44 9-29 (36)
104 PRK07105 pyridoxamine kinase; 27.1 1.2E+02 0.0026 23.8 4.4 41 83-126 215-255 (284)
105 PRK12412 pyridoxal kinase; Rev 26.7 1.1E+02 0.0024 23.9 4.0 38 86-126 209-246 (268)
106 cd00126 PAH Pancreatic Hormone 26.2 1.2E+02 0.0026 16.5 3.2 21 24-44 9-29 (36)
107 PRK10465 hydrogenase 2-specifi 25.7 46 0.00099 24.5 1.6 57 66-125 80-136 (159)
108 PF04358 DsrC: DsrC like prote 25.2 1.8E+02 0.0038 19.9 4.3 34 2-39 40-73 (109)
109 PF01726 LexA_DNA_bind: LexA D 25.0 1.7E+02 0.0037 17.8 3.9 23 15-37 14-36 (65)
110 COG1086 Predicted nucleoside-d 24.9 54 0.0012 29.1 2.1 18 107-124 452-469 (588)
111 COG0771 MurD UDP-N-acetylmuram 24.5 91 0.002 26.9 3.4 65 54-120 346-411 (448)
112 PF07104 DUF1366: Protein of u 24.5 68 0.0015 22.3 2.2 51 72-125 11-61 (116)
113 TIGR01643 YD_repeat_2x YD repe 23.8 1.1E+02 0.0025 16.2 2.7 12 66-77 26-37 (42)
114 cd01169 HMPP_kinase 4-amino-5- 23.6 1.4E+02 0.0031 22.5 4.1 39 84-125 202-240 (242)
115 TIGR00760 araD L-ribulose-5-ph 23.3 2.1E+02 0.0045 22.0 5.0 44 110-153 3-56 (231)
116 PRK14606 ruvA Holliday junctio 23.3 1.5E+02 0.0034 22.2 4.1 36 84-121 151-186 (188)
117 COG5469 Predicted metal-bindin 23.3 1.1E+02 0.0023 22.0 3.0 32 3-34 39-71 (143)
118 PRK12328 nusA transcription el 23.1 3.9E+02 0.0084 22.5 6.7 43 104-147 14-57 (374)
119 PRK09220 methylthioribulose-1- 23.1 1.8E+02 0.004 21.8 4.5 47 107-153 1-56 (204)
120 PRK12616 pyridoxal kinase; Rev 23.0 1.4E+02 0.003 23.4 4.0 39 85-126 211-249 (270)
121 PF08529 NusA_N: NusA N-termin 22.9 2.6E+02 0.0056 19.2 5.0 43 104-147 12-55 (122)
122 PF05176 ATP-synt_10: ATP10 pr 22.6 1.3E+02 0.0029 23.7 3.7 35 62-99 213-247 (252)
123 PF14593 PH_3: PH domain; PDB: 22.6 75 0.0016 21.5 2.0 16 65-80 36-51 (104)
124 cd01168 adenosine_kinase Adeno 22.3 3.9E+02 0.0084 20.9 6.8 66 53-125 233-305 (312)
125 PF10632 He_PIG_assoc: He_PIG 22.2 1.2E+02 0.0026 15.6 2.2 22 55-77 5-26 (29)
126 cd01944 YegV_kinase_like YegV- 22.2 3.7E+02 0.0081 20.7 7.0 62 54-121 215-282 (289)
127 KOG3284 Vacuolar sorting prote 22.0 1.1E+02 0.0024 23.3 3.0 28 17-44 94-131 (213)
128 COG0235 AraD Ribulose-5-phosph 21.5 2.5E+02 0.0054 21.4 5.0 47 107-153 3-59 (219)
129 PRK02260 S-ribosylhomocysteina 21.3 3.4E+02 0.0074 19.9 6.3 61 66-126 71-150 (158)
130 TIGR00055 uppS undecaprenyl di 20.9 2.6E+02 0.0057 21.7 5.0 54 105-161 17-72 (226)
131 COG2920 DsrC Dissimilatory sul 20.8 2.9E+02 0.0062 18.9 4.8 34 3-40 43-76 (111)
132 PF01592 NifU_N: NifU-like N t 20.7 2.9E+02 0.0063 18.9 8.9 63 60-125 29-96 (126)
133 KOG2449 Methylmalonate semiald 20.7 3.4E+02 0.0074 19.7 5.4 75 1-81 4-83 (157)
134 PF00564 PB1: PB1 domain; Int 20.7 2.2E+02 0.0048 17.5 6.2 51 105-161 20-70 (84)
135 KOG1930 Focal adhesion protein 20.4 65 0.0014 27.5 1.6 19 99-118 212-230 (483)
136 cd00475 CIS_IPPS Cis (Z)-Isopr 20.4 2.7E+02 0.0059 21.5 5.0 53 105-160 18-72 (221)
137 PRK14065 exodeoxyribonuclease 20.4 2.6E+02 0.0057 18.3 4.4 31 89-121 30-60 (86)
138 TIGR00097 HMP-P_kinase phospho 20.3 1.8E+02 0.0038 22.4 4.0 39 85-126 202-240 (254)
139 COG2096 cob(I)alamin adenosylt 20.3 2.5E+02 0.0054 21.2 4.6 36 5-40 125-160 (184)
140 KOG0330 ATP-dependent RNA heli 20.1 1.1E+02 0.0024 26.1 2.9 89 28-121 137-233 (476)
141 cd07261 Glo_EDI_BRP_like_11 Th 20.1 1.3E+02 0.0028 19.4 2.9 17 65-81 96-112 (114)
142 PF05823 Gp-FAR-1: Nematode fa 20.0 2.6E+02 0.0057 20.2 4.6 45 1-45 74-120 (154)
No 1
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-40 Score=241.99 Aligned_cols=155 Identities=35% Similarity=0.582 Sum_probs=149.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
|.||+|.|++..|..++.|...|+++||+..|+..++..+|+|||++|.|||||+++|||||. ++|.||++||||++..
T Consensus 79 mgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~ 157 (233)
T KOG0181|consen 79 MGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFA 157 (233)
T ss_pred CCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceee
Confidence 579999999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
|+++|+|.+...++++||++| +++|.+++++..|+.+|++..+..+++++|||+++..+ .|++++++||+++|+.+
T Consensus 158 wkatA~Gkn~v~aktFlEkR~--~edleldd~ihtailtlkE~fege~~~~nieigv~~~~--~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 158 WKATAMGKNYVNAKTFLEKRY--NEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGEN--GFRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhhhhccCcchHHHHHHHHh--ccccccchHHHHHHHHHHHHhccccccCceEEEEecCC--ceeecCHHHHHHHHhcC
Confidence 999999999999999999998 78999999999999999999999999999999999854 49999999999999764
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-39 Score=247.96 Aligned_cols=154 Identities=36% Similarity=0.595 Sum_probs=146.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|++++|.+++.|++.+|++++++.++++|++++|.||++++.|||+|++||+|||+ .||+||++||+|++.+
T Consensus 74 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~ 152 (227)
T cd03750 74 MGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFT 152 (227)
T ss_pred cHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEe
Confidence 468999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
++++|+|+|++.++++||++| +++||++||++++++||..+.+|++...+++|++|++++ ++++++++||++++.
T Consensus 153 ~~~~a~G~g~~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~-~~~~~~~~ei~~~~~ 227 (227)
T cd03750 153 WKATAIGKNYSNAKTFLEKRY--NEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETK-GFRLLTPAEIKDYLA 227 (227)
T ss_pred eeEEEECCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-CEEECCHHHHHHHhC
Confidence 999999999999999999999 589999999999999999999988877799999999875 499999999999873
No 3
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-40 Score=242.77 Aligned_cols=158 Identities=34% Similarity=0.529 Sum_probs=150.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
|+||++.|++++|.+|++|++..+.|+++++++++|+.+.|.|||++|.||||+|.+|+|||+++.|.||.+||+|.+.+
T Consensus 77 l~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~e 156 (249)
T KOG0183|consen 77 LTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSE 156 (249)
T ss_pred CCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999987899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
|++.|||.+++.++.+|||+|...+-.|..++++|++++|..+.+. ..++||+++++..+. ++.+++++|+.++..+
T Consensus 157 wka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~-~~~l~~~~I~~~v~~i 233 (249)
T KOG0183|consen 157 WKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKD-LKMLESEEIDDIVKEI 233 (249)
T ss_pred hhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCc-eeecCHHHHHHHHHHH
Confidence 9999999999999999999997666789999999999999999853 556999999999876 9999999999999988
Q ss_pred h
Q 031203 161 S 161 (164)
Q Consensus 161 ~ 161 (164)
+
T Consensus 234 e 234 (249)
T KOG0183|consen 234 E 234 (249)
T ss_pred H
Confidence 7
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.8e-38 Score=249.19 Aligned_cols=160 Identities=34% Similarity=0.541 Sum_probs=150.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+++++|.+++.|++.++++++++.+++.+++.+|.|+|+++.|||+|++||||||+++||+||.+||+|++.+
T Consensus 79 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~ 158 (253)
T PTZ00246 79 LTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSG 158 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEec
Confidence 46899999999999999999999999999999999999999999999999999999999999657999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCC----CcEEEcCHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN----PEFRVLSIEEIDE 155 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~----~~~k~l~~~ei~~ 155 (164)
++++|+|+|+..++++|+++| +++||+|||++++++||..+.+++..++ +++|++|++++ +.|++++++||++
T Consensus 159 ~~~~a~G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~ 236 (253)
T PTZ00246 159 WKATAIGQNNQTAQSILKQEW--KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAE 236 (253)
T ss_pred ceEEEECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHH
Confidence 999999999999999999998 6899999999999999999999887765 99999999874 3499999999999
Q ss_pred HHHHhhc
Q 031203 156 HLTAISE 162 (164)
Q Consensus 156 ~l~~~~~ 162 (164)
+|.++.+
T Consensus 237 ~l~~~~~ 243 (253)
T PTZ00246 237 LLKKVTQ 243 (253)
T ss_pred HHHHHhh
Confidence 9999874
No 5
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=236.24 Aligned_cols=164 Identities=68% Similarity=1.024 Sum_probs=160.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++..++++|.++.++++.||.+||++.||++++++.|.|||..-+||+||.+++.|+|++.||.+|.+||.|-+..
T Consensus 83 ~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g 162 (246)
T KOG0182|consen 83 MIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYG 162 (246)
T ss_pred CCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
++++|.|-..+.+.++|||+|+.+.++|.+|++++|+.||..++.-|..+..+||+++++++++|++|+.+||+++|..|
T Consensus 163 ~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~I 242 (246)
T KOG0182|consen 163 FKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQAI 242 (246)
T ss_pred ceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHHHh
Confidence 99999999999999999999987778999999999999999999989999999999999999999999999999999999
Q ss_pred hccC
Q 031203 161 SERD 164 (164)
Q Consensus 161 ~~~~ 164 (164)
.|||
T Consensus 243 AEkd 246 (246)
T KOG0182|consen 243 AEKD 246 (246)
T ss_pred hhcC
Confidence 9997
No 6
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-38 Score=244.40 Aligned_cols=157 Identities=39% Similarity=0.623 Sum_probs=149.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.||++.|++++|.+|+.|++.+|++|+|+.+++++|+++|.|+++ .|||||++||||+|+ ++|+||++||+|++.+
T Consensus 78 ~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~ 154 (236)
T COG0638 78 LAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNE 154 (236)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceee
Confidence 5799999999999999999999999999999999999999999987 899999999999999 8999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
++++|+|+|++.++++||++| +++|++|||++++++||..+.+||..++ +++|+++++++ +++.+++++++.++..
T Consensus 155 ~~~~a~Gsgs~~a~~~Le~~y--~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~-~~~~~~~~~~~~~~~~ 231 (236)
T COG0638 155 YKATAIGSGSQFAYGFLEKEY--REDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDE-GFRKLDGEEIKKLLDD 231 (236)
T ss_pred cCEEEEcCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCC-CeEEcCHHHHHHHHHH
Confidence 999999999999999999998 6889999999999999999999998655 88999999974 4999999999999998
Q ss_pred hhcc
Q 031203 160 ISER 163 (164)
Q Consensus 160 ~~~~ 163 (164)
+.++
T Consensus 232 ~~~~ 235 (236)
T COG0638 232 LSEK 235 (236)
T ss_pred Hhhc
Confidence 8765
No 7
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=9e-38 Score=243.63 Aligned_cols=157 Identities=36% Similarity=0.632 Sum_probs=149.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+++++|.+++.|++.++++++|+.+++++++.+|.|+|+++.|||+|++||||||+ +||+||.+||+|++.+
T Consensus 83 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~ 161 (241)
T PRK03996 83 LVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLE 161 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeec
Confidence 468999999999999999999999999999999999999999999999999999999999997 7899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
++++|+|+++..++++|+++| +++|+++||++++++||..+.+++.....++|+++++++++|+.++++||++++.++
T Consensus 162 ~~~~a~G~g~~~~~~~Le~~~--~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 162 YKATAIGAGRDTVMEFLEKNY--KEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred ceEEEECCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 999999999999999999998 688999999999999999998876655599999999998789999999999999875
No 8
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=231.18 Aligned_cols=162 Identities=30% Similarity=0.501 Sum_probs=151.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|+..|++.+|..+|.|.+.||++||++.|++.+++++|.|||++|.||||||||.+|||...|.+||+.||||++..
T Consensus 79 lt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~g 158 (249)
T KOG0178|consen 79 LTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGG 158 (249)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcc-CCCCeEEEEEEEcCCC--cEEEcCHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKASEIEVGVVSKENP--EFRVLSIEEIDEHL 157 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d-~~~~~iei~ii~~~~~--~~k~l~~~ei~~~l 157 (164)
|++.|+|.++..+...|.+.|+ ...++++||+.+|++.|...++.. +.+..+||+.++++.. .+++++++||.++|
T Consensus 159 Wka~ciG~N~~Aa~s~Lkqdyk-dd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll 237 (249)
T KOG0178|consen 159 WKATCIGANSGAAQSMLKQDYK-DDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLL 237 (249)
T ss_pred cceeeeccchHHHHHHHHhhhc-cccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHH
Confidence 9999999999999999999985 345679999999999999999875 5667999999998764 48899999999999
Q ss_pred HHhhcc
Q 031203 158 TAISER 163 (164)
Q Consensus 158 ~~~~~~ 163 (164)
.+++++
T Consensus 238 ~k~~~~ 243 (249)
T KOG0178|consen 238 EKYHET 243 (249)
T ss_pred HHhhhh
Confidence 998853
No 9
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=227.52 Aligned_cols=155 Identities=30% Similarity=0.550 Sum_probs=146.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhcc-----CccccceeeEEEEEcCCCCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHA-----YMRPLGVVAMVLSIDEECGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~-----~~rP~gv~~iiaG~d~~~gp~Ly~~dp~ 75 (164)
|.+|++.|++++|.+|++|.+.||++|+++.+++.+|++...|-... ..|||||++|+||+|+ +||+||..|||
T Consensus 81 l~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPS 159 (241)
T KOG0176|consen 81 LIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPS 159 (241)
T ss_pred cccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCC
Confidence 67999999999999999999999999999999999999998886542 3699999999999997 89999999999
Q ss_pred cceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHH
Q 031203 76 GHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDE 155 (164)
Q Consensus 76 G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~ 155 (164)
|++..+++-|||+|+..+.+.|++.| .++|+++||+.+++..|+.+++..+++.|+++.+|++++. |++++++|++.
T Consensus 160 Gtf~~~~AKAIGSgsEga~~~L~~e~--~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~-f~~~t~EE~~~ 236 (241)
T KOG0176|consen 160 GTFIRYKAKAIGSGSEGAESSLQEEY--HKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGE-FHIYTPEEVEQ 236 (241)
T ss_pred CceEEecceeccccchHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCc-eEecCHHHHHH
Confidence 99999999999999999999999999 5889999999999999999999999999999999999864 99999999999
Q ss_pred HHHH
Q 031203 156 HLTA 159 (164)
Q Consensus 156 ~l~~ 159 (164)
++..
T Consensus 237 ~i~~ 240 (241)
T KOG0176|consen 237 VIKR 240 (241)
T ss_pred HHhc
Confidence 9865
No 10
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.8e-36 Score=233.29 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=143.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCC-CCCeEEEeCCCc-ce
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAG-HF 78 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~-~gp~Ly~~dp~G-~~ 78 (164)
+.+|++.|++++|.+++.|+++++++|+|+.++++|++++|.++ .+++|||+|++||||||++ ++|+||++||+| ++
T Consensus 50 ~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~ 128 (219)
T TIGR03690 50 TAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRY 128 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCee
Confidence 46899999999999999999999999999999999999999887 4568999999999999964 579999999999 57
Q ss_pred eeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCe--------EEEEEEEcCCCcEEEcCH
Q 031203 79 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE--------IEVGVVSKENPEFRVLSI 150 (164)
Q Consensus 79 ~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~--------iei~ii~~~~~~~k~l~~ 150 (164)
..++++|+|+|++.++++||++| +++||.+||++++++||..+.++|..+++ ++|++|++++ |+++++
T Consensus 129 ~~~~~~a~G~g~~~a~~~Le~~~--~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g--~~~l~~ 204 (219)
T TIGR03690 129 EERGYHAVGSGSVFAKGALKKLY--SPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG--ARRVPE 204 (219)
T ss_pred ecCCeEEEeccHHHHHHHHHhcC--CCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc--eEEcCH
Confidence 77799999999999999999998 68999999999999999999999975552 3999997654 999999
Q ss_pred HHHHHHHHHhhc
Q 031203 151 EEIDEHLTAISE 162 (164)
Q Consensus 151 ~ei~~~l~~~~~ 162 (164)
+||++++.++.+
T Consensus 205 ~ei~~~~~~~~~ 216 (219)
T TIGR03690 205 SELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 11
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-36 Score=227.25 Aligned_cols=138 Identities=16% Similarity=0.261 Sum_probs=130.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.||++.|++++|.+++.|++.++++++|+.+++++++++|.|++++ |||++++||||||+++||+||.+||+|++.+
T Consensus 49 ~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~ 126 (193)
T cd03758 49 EAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVK 126 (193)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEE
Confidence 46999999999999999999999999999999999999999887643 8999999999999767899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCC
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 142 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~ 142 (164)
++++|+|+|++.++++||++| +++||.|||++++.+|+..+.+||..++ +++|++|++++
T Consensus 127 ~~~~a~G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g 187 (193)
T cd03758 127 VPYAAHGYGAYFCLSILDRYY--KPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDG 187 (193)
T ss_pred CCeeEEeecHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCC
Confidence 999999999999999999998 5899999999999999999999998776 99999999886
No 12
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-36 Score=230.62 Aligned_cols=138 Identities=71% Similarity=1.098 Sum_probs=130.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|++++|.+++.|+++++++|+|+.+|+++++++|.||++++.|||+|++||||||+++||+||++||+|++.+
T Consensus 76 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~ 155 (215)
T cd03754 76 MIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAG 155 (215)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999767999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhhhccCCCCeEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVV 138 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~l--s~eea~~l~~~al~~~~~~d~~~~~iei~ii 138 (164)
++++|+|+|++.++++||++|+.+.+| |.|||++++++||..+.+||+...++||+|+
T Consensus 156 ~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 156 YKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 999999999999999999999644468 9999999999999999999988669999985
No 13
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6e-36 Score=229.20 Aligned_cols=138 Identities=33% Similarity=0.571 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|++++|.+++.|+++++++++|+.+|+.+++.+|.||++++.|||+|++||+|||+ .||+||++||+|++.+
T Consensus 72 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~ 150 (211)
T cd03749 72 LTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFE 150 (211)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEee
Confidence 479999999999999999999999999999999999999999999999999999999999997 6899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcc--CCCCeEEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED--FKASEIEVGVVS 139 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d--~~~~~iei~ii~ 139 (164)
++++|+|+|++.++++||++|+.+++||++||+++++++|..++++| ....+|||++|+
T Consensus 151 ~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 151 YKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred eeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999999999965579999999999999999999876 555699999984
No 14
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.1e-35 Score=229.56 Aligned_cols=148 Identities=40% Similarity=0.646 Sum_probs=139.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+.++++.++..|+++++++++|+.+++++++.+|.|+++++.|||+|++||||||+ +||+||.+||+|++.+
T Consensus 76 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~ 154 (224)
T TIGR03633 76 LVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLE 154 (224)
T ss_pred cHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeec
Confidence 468999999999999999999999999999999999999999999999999999999999996 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEE 152 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~e 152 (164)
++++|+|+++..++++|+++| +++||.+||++++++||..+.+ |..++ +++|++|+++++.|+.++++|
T Consensus 155 ~~~~a~G~g~~~~~~~L~~~~--~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 155 YKATAIGAGRQAVTEFLEKEY--REDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred ceEEEECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 999999999999999999998 6899999999999999999987 65554 999999999887799998875
No 15
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=3.9e-35 Score=229.27 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=139.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCcccccee--eEEEEEcCCCCCeEEEeCCCcce
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVV--AMVLSIDEECGPRLFKCDPAGHF 78 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~--~iiaG~d~~~gp~Ly~~dp~G~~ 78 (164)
+.+|++.|++++|.+++.|++++|++|+|+.++++|++++|.| |||+++ +||||||+ .||+||++||+|++
T Consensus 87 ~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~ 159 (247)
T PTZ00488 87 GAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNY------KGMGLSMGTMICGWDK-KGPGLFYVDNDGTR 159 (247)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeC-CCCEEEEEcCCcce
Confidence 4689999999999999999999999999999999999999654 566555 89999997 78999999999999
Q ss_pred eeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHH
Q 031203 79 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHL 157 (164)
Q Consensus 79 ~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l 157 (164)
.+++++|+|+|+..++++||+.| +++||.+||++++++||..+.+||..++ +++|++|++++ ++.++++||++++
T Consensus 160 ~~~~~~a~G~gs~~~~~~Le~~~--k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g--~~~l~~~ei~~~l 235 (247)
T PTZ00488 160 LHGNMFSCGSGSTYAYGVLDAGF--KWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG--WKKISADDCFDLH 235 (247)
T ss_pred eecCCEEEccCHHHHHHHHHhcC--cCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc--cEECCHHHHHHHH
Confidence 99999999999999999999998 5789999999999999999999997766 99999999775 8999999999999
Q ss_pred HHhhc
Q 031203 158 TAISE 162 (164)
Q Consensus 158 ~~~~~ 162 (164)
.++++
T Consensus 236 ~~~~~ 240 (247)
T PTZ00488 236 QKYAA 240 (247)
T ss_pred HHHhh
Confidence 99873
No 16
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-35 Score=223.28 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=129.6
Q ss_pred CCchHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCccee
Q 031203 1 MTADARTLVQQARYEAA-EFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFF 79 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~ 79 (164)
+.+|++.|++++|.+++ .+++.++++++|+.++++|++++ |+|++++|||+|++||||||+++||+||++||+|++.
T Consensus 50 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~ 127 (197)
T cd03760 50 DYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAY 127 (197)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEE
Confidence 46899999999999987 57788999999999999999986 9998899999999999999976789999999999999
Q ss_pred eeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCC
Q 031203 80 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 142 (164)
Q Consensus 80 ~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~ 142 (164)
+++++|+|+|+..++++||++|+++++||.+||++++++||..+.+||..++ +++|++|++++
T Consensus 128 ~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 191 (197)
T cd03760 128 EDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEG 191 (197)
T ss_pred ECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCC
Confidence 9999999999999999999999533389999999999999999999997666 99999999875
No 17
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-35 Score=225.29 Aligned_cols=136 Identities=29% Similarity=0.491 Sum_probs=129.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+++++|.+++.|++++|++|+|+.+++.|+..+|.|||+++.|||+|++||+|||++.||+||.+||+|++.+
T Consensus 77 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~ 156 (213)
T cd03752 77 ITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSG 156 (213)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeee
Confidence 46999999999999999999999999999999999999999999999999999999999999767999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCC-CeEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVV 138 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~-~~iei~ii 138 (164)
++++|+|+++..++++||++| +++||++||++++++||..+.+|+... .++||+++
T Consensus 157 ~~~~a~G~gs~~~~~~Le~~y--~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 157 WKATAIGNNNQAAQSLLKQDY--KDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred eeEEEECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999998 689999999999999999999988555 48999875
No 18
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-35 Score=225.29 Aligned_cols=135 Identities=35% Similarity=0.459 Sum_probs=128.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|++++|.+++.|++++|++++|+.++++|++++|.||++++.|||+|++||+|||+ +||+||.+||+|++.+
T Consensus 77 ~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~ 155 (212)
T cd03751 77 LLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYG 155 (212)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEe
Confidence 479999999999999999999999999999999999999999999999999999999999997 7899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc-cCCCCeEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVV 138 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~-d~~~~~iei~ii 138 (164)
++++|+|+|+..++++||++| +++||++||+++++++|+.+++. +....+|||+++
T Consensus 156 ~~~~a~G~g~~~a~~~Lek~~--~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 156 YFGCAIGKGKQAAKTELEKLK--FSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred eEEEEECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999 68999999999999999999984 466679999875
No 19
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.2e-35 Score=223.91 Aligned_cols=134 Identities=33% Similarity=0.564 Sum_probs=127.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|.+++|.+++.|+++++++|+|+.++++|++++|.|+++++.|||+|++||+|||+++||+||.+||+|++.+
T Consensus 74 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~ 153 (207)
T cd03755 74 LTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSA 153 (207)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEc
Confidence 46999999999999999999999999999999999999999999999999999999999999867999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 138 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii 138 (164)
++++|+|+|++.++++||++| +++||.+||++++++||..+.+ .+..++||+++
T Consensus 154 ~~~~a~G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 154 WKANAIGRNSKTVREFLEKNY--KEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred ceEEEECCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999999999999 6899999999999999999985 45559999985
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-35 Score=218.74 Aligned_cols=160 Identities=32% Similarity=0.515 Sum_probs=152.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
|++|++.|.+++|.+|..+++.|++++|+..++..|++.+|..||+.+.|||||+++|+|+|+ .||+||.++|+|++.+
T Consensus 77 Lt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e 155 (264)
T KOG0863|consen 77 LTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFE 155 (264)
T ss_pred cCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEE
Confidence 689999999999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc--cCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE--DFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~--d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
+++.+||+.||.+.++||++...+++++.||.+..+++||...+.. +++..+++|+|+.++.+ |.+++.+++.+++.
T Consensus 156 ~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p-f~~~d~~~~~k~~~ 234 (264)
T KOG0863|consen 156 CKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP-FTILDQKDVAKYVD 234 (264)
T ss_pred EeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc-eEeecHHHHHHHHH
Confidence 9999999999999999999988889999999999999999999874 46677999999999987 99999999999987
Q ss_pred Hhhc
Q 031203 159 AISE 162 (164)
Q Consensus 159 ~~~~ 162 (164)
....
T Consensus 235 ~~~~ 238 (264)
T KOG0863|consen 235 LFKK 238 (264)
T ss_pred Hhhc
Confidence 7653
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=8e-35 Score=225.09 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=137.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcC-CCCCeEEEeCCCcce
Q 031203 1 MTADARTLVQQARYEAAEFRFKYG-YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHF 78 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~-~~gp~Ly~~dp~G~~ 78 (164)
+.+|++.++++++.+++.|++.++ .+++++.+++++++.+..++ +++.|||||++||+|||+ +.||+||++||+|++
T Consensus 67 ~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~ 145 (228)
T TIGR03691 67 KYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSI 145 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCc
Confidence 468999999999999999999998 78999999988888776666 567899999999999985 478999999999999
Q ss_pred eeee-EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhh--cc-CCCCeEEEEEEEcCC--CcEEEcCHHH
Q 031203 79 FGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--ED-FKASEIEVGVVSKEN--PEFRVLSIEE 152 (164)
Q Consensus 79 ~~~~-~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~--~d-~~~~~iei~ii~~~~--~~~k~l~~~e 152 (164)
.+++ ++|+|+|++.++++||++| +++||+|||++++++||..+++ ++ ++..++||+++++++ +.|++|+++|
T Consensus 146 ~~~~~~~aiG~gs~~a~~~Lek~y--~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~e 223 (228)
T TIGR03691 146 VDERGFVVMGGTTEPIATALKESY--RDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEA 223 (228)
T ss_pred eeccceEEECCChHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHH
Confidence 9976 8999999999999999998 5899999999999999999964 32 566699999999753 4699999999
Q ss_pred HHHHH
Q 031203 153 IDEHL 157 (164)
Q Consensus 153 i~~~l 157 (164)
|+++|
T Consensus 224 i~~~l 228 (228)
T TIGR03691 224 LERLL 228 (228)
T ss_pred HHhhC
Confidence 99874
No 22
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-34 Score=218.20 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=129.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|++++|.+++.|++++|++|+|+.+++++++++|.|++ .||+|++||||||+ +||+||++||+|++.+
T Consensus 48 ~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~----~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~ 122 (188)
T cd03761 48 GAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKG----MGLSMGTMICGWDK-TGPGLYYVDSDGTRLK 122 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCC----CCeEEEEEEEEEeC-CCCEEEEEcCCceEEE
Confidence 468999999999999999999999999999999999999988754 48999999999997 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEc
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 148 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l 148 (164)
++++|+|+|++.++++||++| +++||.|||++++++||..+.+||..++ +++|++|++++ ++++
T Consensus 123 ~~~~a~G~g~~~~~~~Le~~~--~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g--~~~~ 187 (188)
T cd03761 123 GDLFSVGSGSTYAYGVLDSGY--RYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDG--WRKI 187 (188)
T ss_pred cCeEEEcccHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCc--eEEc
Confidence 999999999999999999998 6899999999999999999999998776 99999999886 4544
No 23
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-34 Score=219.66 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=129.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|++++|.+++.|+++++++|+|+.++++|++++ |+++ .|||+|++||||||+++||+||++||+|++..
T Consensus 51 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~ 126 (195)
T cd03759 51 LATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSI 126 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccc
Confidence 3689999999999999999999999999999999999998 7653 68999999999999767899999999999988
Q ss_pred ee-EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEE
Q 031203 81 HK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 147 (164)
Q Consensus 81 ~~-~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~ 147 (164)
++ ++|+|+|++.++++||++| +++||.+||++++++||..+.+||..++ +++|++|++++...+.
T Consensus 127 ~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 193 (195)
T cd03759 127 PSDFVVSGTASEQLYGMCESLW--RPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRT 193 (195)
T ss_pred cCCEEEEcccHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEe
Confidence 87 9999999999999999998 6899999999999999999999997766 9999999988753443
No 24
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-35 Score=225.29 Aligned_cols=140 Identities=12% Similarity=0.184 Sum_probs=127.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH-HhhhhccC-----ccccceeeEEEEEcCCCCCeEEEeC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGY-EMPVDVLAKWIADKS-QVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCD 73 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~-~i~~~~l~~~ls~~~-q~yt~~~~-----~rP~gv~~iiaG~d~~~gp~Ly~~d 73 (164)
++||++.|++++|.+++.|++++|+ +++++.+|+++++++ |.++|+.+ .|||||++||||||++.||+||++|
T Consensus 51 ~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~id 130 (236)
T cd03765 51 NLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIY 130 (236)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEEC
Confidence 4689999999999999999999999 899999999999985 55666664 4899999999999966899999999
Q ss_pred CCcceeeee----EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC
Q 031203 74 PAGHFFGHK----ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 143 (164)
Q Consensus 74 p~G~~~~~~----~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~ 143 (164)
|+|++.+++ ++|+|+ ++.++++||++| +++||+|||+++|++||..+++||..++ +++|++|+++|.
T Consensus 131 psG~~~e~~a~~~~~AiG~-~~~a~~~Lek~y--k~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~ 202 (236)
T cd03765 131 PQGNFIEATPDTPFLQIGE-TKYGKPILDRVI--TPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSL 202 (236)
T ss_pred CCCCEEeecCCCceeeeCC-chhhHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCe
Confidence 999999994 589996 799999999999 5799999999999999999999998777 899999999864
No 25
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.6e-34 Score=217.48 Aligned_cols=136 Identities=38% Similarity=0.639 Sum_probs=130.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+.++++.+++.|+++++++++++.+++++++.+|.|+++++.|||+|++||||||+ .||+||.+||+|++.+
T Consensus 75 ~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~ 153 (211)
T cd03756 75 LVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNE 153 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeee
Confidence 468999999999999999999999999999999999999999999999999999999999997 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVS 139 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~ 139 (164)
++++|+|++++.++++|+++| +++||++||++++++||..+.+++....+++|++|+
T Consensus 154 ~~~~a~G~g~~~~~~~Le~~~--~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 154 YKATAIGSGRQAVTEFLEKEY--KEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred eEEEEECCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999999999999 689999999999999999999888855599999996
No 26
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-33 Score=215.41 Aligned_cols=139 Identities=17% Similarity=0.338 Sum_probs=128.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.||++.+++++|.+++.|++++|++|+|+.+++++++++ |++ +.|||+|++||||||++++|+||.+||+|++.+
T Consensus 56 ~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~l--y~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~ 131 (212)
T cd03757 56 FQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTIL--YSR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYER 131 (212)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHH--Hhh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeee
Confidence 3689999999999999999999999999999999999998 554 357999999999999767799999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC
Q 031203 81 HKATSAGLKEQEAINFLEKKMK-------NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 143 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~-------~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~ 143 (164)
++++|+|+|+..++++||+.|+ ++++||++||++++.+||..+.+||..++ +++|++|++++.
T Consensus 132 ~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~ 202 (212)
T cd03757 132 ETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGI 202 (212)
T ss_pred cCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCE
Confidence 9999999999999999999984 24899999999999999999999997776 999999999874
No 27
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.1e-33 Score=209.93 Aligned_cols=134 Identities=27% Similarity=0.432 Sum_probs=127.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceeee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
.+|++.|.++++.+++.|++.++++++|+.++++|++++|.+ ++|||+|++||||||+ +||+||.+||+|++.++
T Consensus 50 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~ 124 (185)
T TIGR03634 50 VGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIED 124 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEEC
Confidence 589999999999999999999999999999999999999764 6899999999999997 78999999999999999
Q ss_pred eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCC
Q 031203 82 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 142 (164)
Q Consensus 82 ~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~ 142 (164)
+++++|+++..++++||++| +++||++||++++++||..+.+|+..++ +++|++|+++|
T Consensus 125 ~~~a~G~g~~~~~~~Le~~~--~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 125 DYTATGSGSPVAYGVLEDEY--REDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred CEEEEcCcHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 99999999999999999999 5899999999999999999999997776 89999999875
No 28
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-33 Score=209.02 Aligned_cols=139 Identities=27% Similarity=0.413 Sum_probs=130.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|.++++.+++.|++.++++++++.+++++++.+|.+ ++|||+|++||||||+ ++|+||.+||+|++.+
T Consensus 48 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~ 122 (188)
T cd03764 48 SVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIE 122 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEE
Confidence 4689999999999999999999999999999999999999664 5799999999999997 7899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEc
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 148 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l 148 (164)
++++|+|+|++.++++|++.| +++||.+||++++++||..+.+||..++ +++|+++++++ ++++
T Consensus 123 ~~~~a~G~g~~~~~~~L~~~~--~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g--~~~~ 187 (188)
T cd03764 123 DKYTATGSGSPYAYGVLEDEY--KEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDG--YKEL 187 (188)
T ss_pred cCEEEEcCcHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCC--eEeC
Confidence 999999999999999999998 6899999999999999999999997766 89999999875 7765
No 29
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-33 Score=212.29 Aligned_cols=135 Identities=33% Similarity=0.577 Sum_probs=126.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhc-----cCccccceeeEEEEEcCCCCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~-----~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~ 75 (164)
+.+|++.+.+++|.+++.|++++|++|+|+.++++|++++|.|++. ++.|||+|++||||||+ +||+||.+||+
T Consensus 74 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~ 152 (213)
T cd03753 74 LIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPS 152 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCC
Confidence 4689999999999999999999999999999999999999999874 34799999999999997 79999999999
Q ss_pred cceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEE
Q 031203 76 GHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 138 (164)
Q Consensus 76 G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii 138 (164)
|++.+++++|+|++++.++++|+++| +++||.+||++++++||+.+.++++...++||+++
T Consensus 153 G~~~~~~~~a~G~~~~~~~~~L~~~~--~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 153 GTFTRCDAKAIGSGSEGAQSSLQEKY--HKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred CCeecccEEEECCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999998 68899999999999999999888877779999975
No 30
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.1e-32 Score=210.71 Aligned_cols=136 Identities=49% Similarity=0.789 Sum_probs=129.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+.++++.++..|++++|++++++.+++++++++|.|+++++.|||+|++||+|||+++||+||.+||+|++.+
T Consensus 74 ~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~ 153 (209)
T cd01911 74 LTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFG 153 (209)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeee
Confidence 46899999999999999999999999999999999999999999999999999999999999866999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 138 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii 138 (164)
++++++|+|+..++++|++.| +++||.+||++++++||..+.+||+....++|+++
T Consensus 154 ~~~~a~G~g~~~~~~~L~~~~--~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 154 YKATAIGKGSQEAKTFLEKRY--KKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred eeEEEeCCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 999999999999999999999 68999999999999999999999993348999875
No 31
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-32 Score=206.79 Aligned_cols=139 Identities=17% Similarity=0.269 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|++++|.+++.|+++++++++++.++++|++.+|.|. .||+|++||||||+ +||+||.+||+|++.+
T Consensus 48 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~-----~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~ 121 (189)
T cd03763 48 TAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQ-----GHIGAALVLGGVDY-TGPHLYSIYPHGSTDK 121 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC-----CccceeEEEEeEcC-CCCEEEEECCCCCEEe
Confidence 36899999999999999999999999999999999999997652 29999999999997 6899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcC
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 149 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 149 (164)
++++|+|+++..++++|+++| +++||.+||++++++||..+.+||+.++ +++|++|++++ +.+..
T Consensus 122 ~~~~a~G~~~~~~~~~L~~~~--~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g--~~~~~ 187 (189)
T cd03763 122 LPFVTMGSGSLAAMSVLEDRY--KPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDG--VEYLR 187 (189)
T ss_pred cCEEEEcCCHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCc--EEEec
Confidence 999999999999999999999 5899999999999999999999998766 89999999886 45443
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-32 Score=205.21 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=127.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|.++++.+++.|++.++++++++.+++++++++|.| .|||+|++||||||++.||+||.+||+|++.+
T Consensus 48 ~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~ 122 (188)
T cd03762 48 SAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIR 122 (188)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEe
Confidence 4689999999999999999999999999999999999998655 37999999999999767899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCC
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 142 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~ 142 (164)
++++++|+|+..++++|++.| +++||.+||++++++||..+.+||..++ +++|++|++++
T Consensus 123 ~~~~~~G~g~~~~~~~Le~~~--~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g 183 (188)
T cd03762 123 QPFAIGGSGSTYIYGYVDANY--KPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDG 183 (188)
T ss_pred cCEEEEcccHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCC
Confidence 999999999999999999998 6899999999999999999999998776 99999999886
No 33
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-31 Score=202.02 Aligned_cols=136 Identities=22% Similarity=0.403 Sum_probs=127.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|+++++.++..|++.++++++++.+++++++.+|.+++ |||++++||||||++++|+||.+||+|++.+
T Consensus 48 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~ 123 (189)
T cd01912 48 SAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIE 123 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEe
Confidence 468999999999999999999999999999999999999976643 8999999999999767899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCC
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 142 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~ 142 (164)
++++|+|++++.++++|++.| +++||++||++++.+||..+.++|..++ .++|++|++++
T Consensus 124 ~~~~a~G~~~~~~~~~Le~~~--~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 124 APFVATGSGSKYAYGILDRGY--KPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred cCEEEEcccHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCC
Confidence 999999999999999999999 6889999999999999999999987766 89999999886
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.9e-31 Score=200.41 Aligned_cols=136 Identities=35% Similarity=0.572 Sum_probs=129.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+.++++.++..|++.++.+++++.+++.+++.+|.+++++++|||++++|+||||++++|+||.+||+|++.+
T Consensus 53 ~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~ 132 (190)
T PF00227_consen 53 LTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIE 132 (190)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEE
T ss_pred cccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeecccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999866699999999999999
Q ss_pred e-eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEE
Q 031203 81 H-KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 138 (164)
Q Consensus 81 ~-~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii 138 (164)
+ +++|+|+|++.++++|++.| .++||++||++++++||..+.++|..++ +++|+||
T Consensus 133 ~~~~~aiG~g~~~~~~~l~~~~--~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 133 CKRFAAIGSGSQFAQPILEKLY--KPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp BSSEEEESTTHHHHHHHHHHHH--TTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred ccccccchhcchhhhHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9 69999999999999999999 6899999999999999999999987666 9999986
No 35
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-31 Score=197.32 Aligned_cols=155 Identities=33% Similarity=0.438 Sum_probs=137.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
|.||.+.+++++|.++.+|+-.|+.|+|...++.+++++.|.||.++..||||++.|+++||. +||+||.+||||....
T Consensus 81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~ 159 (254)
T KOG0184|consen 81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYG 159 (254)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccc
Confidence 579999999999999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccC-CCCeEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDF-KASEIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~-~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
|+++|+|.|.|.+++.|||.- ..+|+.+|+++.+.+.|+.+.+..- ....+||+|+..++++....-|+|+-+...
T Consensus 160 Y~~aaiGKgrq~aKtElEKL~--~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~ 236 (254)
T KOG0184|consen 160 YKGAAIGKGRQAAKTELEKLK--IDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAE 236 (254)
T ss_pred eeeeeccchhHHHHHHHHhcc--cccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHH
Confidence 999999999999999999984 5689999999999999998875432 233799999998765555555556654443
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.97 E-value=1.2e-30 Score=194.78 Aligned_cols=134 Identities=43% Similarity=0.705 Sum_probs=126.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|.+.++.++..|++.++++++++.+++++++.+|.++++ .|||++++|+||||+..+|+||.+||+|++.+
T Consensus 48 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~ 125 (182)
T cd01906 48 LAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIE 125 (182)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEee
Confidence 3689999999999999999999999999999999999999999875 89999999999999767999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEE
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 138 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii 138 (164)
++++|+|+++..+.++|++.| +++||.+||++++++||..+.+++..++ .++|+++
T Consensus 126 ~~~~a~G~g~~~~~~~L~~~~--~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 126 YKATAIGSGSQYALGILEKLY--KPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred ccEEEECCCcHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999999998 5789999999999999999999988665 8999875
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-28 Score=185.63 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=139.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceeee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
+||++.+.+.+..+|++|++++++.|+|...++.||+++.+| .|+ .+.++.+|+|||+ .||.||.+|..|+-.+.
T Consensus 120 AADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~Y---kGm-GLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G 194 (285)
T KOG0175|consen 120 AADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQY---KGM-GLSMGTMIAGWDK-KGPGLYYVDSEGTRLSG 194 (285)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhc---cCc-chhheeeEeeccC-CCCceEEEcCCCCEecC
Confidence 589999999999999999999999999999999999999544 455 6788999999998 89999999999999999
Q ss_pred eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 82 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 82 ~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
+-.++|+|+..|+++|+..| ++|||.|||.+|+++||..+..||..|+ .+.++.|+.++ +..+++.++.+++.++
T Consensus 195 ~~FSVGSGs~yAYGVLDsgY--r~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edG--W~~v~~~Dv~~L~~~~ 270 (285)
T KOG0175|consen 195 DLFSVGSGSTYAYGVLDSGY--RYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDG--WVKVSNTDVSELHYHY 270 (285)
T ss_pred ceEeecCCCceeEEeeccCC--CCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCcc--ceecCCccHHHHHHHH
Confidence 99999999999999999998 6889999999999999999999999998 79999999986 8899999999985554
Q ss_pred h
Q 031203 161 S 161 (164)
Q Consensus 161 ~ 161 (164)
.
T Consensus 271 ~ 271 (285)
T KOG0175|consen 271 Y 271 (285)
T ss_pred H
Confidence 3
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-26 Score=166.31 Aligned_cols=138 Identities=16% Similarity=0.245 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceeee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
.+|+-.+.+++...++.|++++|.+++|+.+++++++.+..+- ++.+||.|++|+||+|++.||.||++|..|+..+.
T Consensus 50 ~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~L--Rsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~v 127 (200)
T KOG0177|consen 50 AGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESL--RSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSV 127 (200)
T ss_pred CCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHH--hcCCCceEEEEEeccCCCCCCceeeehhhhhcccC
Confidence 4789999999999999999999999999999999999997774 45789999999999999889999999999999999
Q ss_pred eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcc-CCCCeEEEEEEEcCCC
Q 031203 82 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKASEIEVGVVSKENP 143 (164)
Q Consensus 82 ~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d-~~~~~iei~ii~~~~~ 143 (164)
++++.|.++.++.++|+.+| +|+||.+||+.+..+|+.++.+|- ++-.++.|.||+++|.
T Consensus 128 py~~hGy~~~f~~sIlDr~Y--~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGi 188 (200)
T KOG0177|consen 128 PYAAHGYGSYFCLSILDRYY--KPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGI 188 (200)
T ss_pred CcccccchhhhhHHHHHhhh--CCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCc
Confidence 99999999999999999998 699999999999999999999884 4556999999999973
No 39
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.2e-25 Score=163.54 Aligned_cols=144 Identities=17% Similarity=0.336 Sum_probs=131.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|+..|++.++...+.|+..++..|++..+|+.|+.++ |. .++.||.|..|+||+|+++++.+|+.||.|++.+
T Consensus 77 F~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~L--Y~--kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer 152 (235)
T KOG0179|consen 77 FYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTIL--YS--KRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYER 152 (235)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH--hh--cccccceeeeeeecccccCceeEEeecCCcceee
Confidence 4689999999999999999999999999999999999999 63 4688999999999999999999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhc---------CCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEc
Q 031203 81 HKATSAGLKEQEAINFLEKKMK---------NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 148 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~---------~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l 148 (164)
..+.|-|+++.+++++|++... ++..||+|+|+.++..++..+.+||+..+ .++|+|+++++...+.+
T Consensus 153 ~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~ 230 (235)
T KOG0179|consen 153 VTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETL 230 (235)
T ss_pred eeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEee
Confidence 9999999999999999998642 13578999999999999999999999998 89999999987544433
No 40
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.7e-25 Score=160.45 Aligned_cols=150 Identities=16% Similarity=0.224 Sum_probs=138.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceeee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
++|.|.+.+.++.....|..+++.++++...++.+++++.+| ..-+.+++||||||++.|.++|.+--.|++.+-
T Consensus 68 AADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~-----re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq 142 (224)
T KOG0174|consen 68 AADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNY-----REMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQ 142 (224)
T ss_pred hhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhC-----HHhhhcceEEeecccccCceEEEeecCceEeec
Confidence 689999999999999999999999999999999999999443 224789999999999899999999888888889
Q ss_pred eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 82 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 82 ~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
+++.-|+||.+++++++.+| +|+||+||++.++.+|+..++.||-.|+ .|.+.+|+++|..++++.+|++.++..
T Consensus 143 ~~aIgGSGStfIYGf~D~~~--r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v 218 (224)
T KOG0174|consen 143 PFAIGGSGSTFIYGFCDANW--RPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAV 218 (224)
T ss_pred ceeeccCCceeeeeeehhhc--CCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccccc
Confidence 99999999999999999999 6899999999999999999999999988 799999999998899999998876543
No 41
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.7e-23 Score=155.65 Aligned_cols=134 Identities=18% Similarity=0.288 Sum_probs=123.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceeee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
++|...+.+.+-.+...|++..++.++|-...+++.+.+..| .| -.|+.+||+|+|+ .|||||.+-|.|+....
T Consensus 86 AADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrY---qG--~IgA~LiiGGvD~-TGpHLy~i~phGStd~~ 159 (271)
T KOG0173|consen 86 AADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRY---QG--HIGAALILGGVDP-TGPHLYSIHPHGSTDKL 159 (271)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHh---cC--cccceeEEccccC-CCCceEEEcCCCCcCcc
Confidence 578999999999999999999999999999999998888444 34 4799999999999 89999999999999999
Q ss_pred eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC
Q 031203 82 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 143 (164)
Q Consensus 82 ~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~ 143 (164)
+++++|||+..+++.||.+| +||||.|||.+|+..|+...+..|+.|+ ++.++||++.+.
T Consensus 160 Pf~alGSGslaAmsvlEsr~--k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~ 220 (271)
T KOG0173|consen 160 PFTALGSGSLAAMSVLESRW--KPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGV 220 (271)
T ss_pred ceeeeccchHHHHHHHHHhc--CcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCc
Confidence 99999999999999999999 6999999999999999999999999999 999999997553
No 42
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.1e-22 Score=144.21 Aligned_cols=137 Identities=15% Similarity=0.264 Sum_probs=129.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
|++|+|.|.++++..-..|++++++.|.|+.+++++|+++ |.+ ++-||.+..+|||.|++++|.|..+|..|+...
T Consensus 56 latDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~l--Yek--RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~ 131 (204)
T KOG0180|consen 56 LATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLL--YEK--RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDA 131 (204)
T ss_pred cchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHH--HHh--hcCCcccceeEeccCCCCCeeEeecccccCcCc
Confidence 5789999999999999999999999999999999999999 654 577999999999999989999999999999987
Q ss_pred e-eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC
Q 031203 81 H-KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 143 (164)
Q Consensus 81 ~-~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~ 143 (164)
- .+++.|.++...++++|..| +|+|..|++++.+.+||.++.+||+-|+ +..+.+|++++.
T Consensus 132 ~~DFVvsGTa~e~L~GmCE~ly--~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 132 PKDFVVSGTASEQLYGMCEALY--EPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred cCCeEEecchHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 5 79999999999999999999 6999999999999999999999999999 999999999864
No 43
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.88 E-value=2.1e-21 Score=140.66 Aligned_cols=115 Identities=39% Similarity=0.588 Sum_probs=109.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.+.++++.+++.|++.++.++++..+++.+++.++.+++ .||+++++||||+|+ ++|+||.+||+|++..
T Consensus 48 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~ 123 (164)
T cd01901 48 LAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIE 123 (164)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEee
Confidence 358999999999999999999999999999999999999998876 799999999999998 8999999999999999
Q ss_pred e-eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 81 H-KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 81 ~-~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
+ .++++|+++..+.++|++.| +++++.+++++++.+||.
T Consensus 124 ~~~~~~~G~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 124 NPGAVATGSRSQRAKSLLEKLY--KPDMTLEEAVELALKALK 163 (164)
T ss_pred cCcEEEECCCCHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 9 99999999999999999998 578999999999999985
No 44
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-19 Score=135.59 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=131.8
Q ss_pred CchHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 2 TADARTLVQQARYEAAEFR-FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~-~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
.+|+|.+.+.+.....+.. +.-|+.+.|+.+..+|+..+ |.+++.+.|+...++|||+|..+.|.|-.+|--|...+
T Consensus 90 isD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~ 167 (256)
T KOG0185|consen 90 ISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYE 167 (256)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeecccccc
Confidence 4799999999988777644 44469999999999999999 98999999999999999999877799999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEI 153 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~-~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei 153 (164)
.+..|+|.|...+.++|++.|+ ..++++.+||..++.+|+...+.||+.+. .++|++|+++| +.+-.|..|
T Consensus 168 ~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG--v~i~~p~qv 240 (256)
T KOG0185|consen 168 SPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG--VTISKPYQV 240 (256)
T ss_pred CchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc--eEecCceee
Confidence 9999999999999999999996 45799999999999999999999999877 89999999975 455555444
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.79 E-value=3.1e-18 Score=126.64 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccc-eeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG-VVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~g-v~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
.+|++.|.++++.+++.|+++.++ .+++.++.+. ..+.+|+. +.+|+++|| +||.+||.|++.+
T Consensus 50 ~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~-----~~~~~~~l~a~~iv~~~~-----~ly~id~~G~~ie 114 (171)
T cd01913 50 TADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWR-----TDRYLRRLEAMLIVADKE-----HTLLISGNGDVIE 114 (171)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHH-----hccCcCceEEEEEEeCCC-----cEEEECCCCCEec
Confidence 589999999999999999999884 4444444332 11345665 666665443 8999999999999
Q ss_pred ee--EEeecCChHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhhhccCCCC-eEEEE
Q 031203 81 HK--ATSAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS-EIEVG 136 (164)
Q Consensus 81 ~~--~~aiG~~s~~~~~~Le~~~~~~~-~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ 136 (164)
.+ ++++||||.+++++||.+| ++ +|| +.++|++|+..+++||..++ +|.|-
T Consensus 115 ~~~~~~a~GSGS~ya~g~ld~~y--k~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~ 169 (171)
T cd01913 115 PDDGIAAIGSGGNYALAAARALL--DHTDLS---AEEIARKALKIAADICIYTNHNITVE 169 (171)
T ss_pred cCCCeEEEeCCHHHHHHHHHHhh--ccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 84 9999999999999999998 57 499 55999999999999999888 77764
No 46
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.78 E-value=5e-18 Score=126.07 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=95.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceeee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
.+|+|.|.+.++.+++.|+. +. ++.+++.++.+. .+...+|+.+++|++ |+ |+||.+||.|++.+.
T Consensus 51 ~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l~----~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~ 116 (172)
T PRK05456 51 TADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDWR----TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEP 116 (172)
T ss_pred HHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHHH----hccCCCccEEEEEEE--cC---CcEEEECCCCcEecc
Confidence 58999999999999999882 22 466665554332 122246888999994 44 699999999999776
Q ss_pred --eEEeecCChHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEE
Q 031203 82 --KATSAGLKEQEAINFLEKKMKND-PAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGV 137 (164)
Q Consensus 82 --~~~aiG~~s~~~~~~Le~~~~~~-~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~i 137 (164)
+++++|+|+.++.++||++| + |+| ||++++++|+..+.+||..++ ++.|-.
T Consensus 117 ~~~~~a~GSGs~~a~g~ld~~y--~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 117 EDGIIAIGSGGNYALAAARALL--ENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CCCeEEEecCHHHHHHHHHHhh--hcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 79999999999999999998 5 889 999999999999999999887 777643
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.75 E-value=2.2e-17 Score=122.16 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=92.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCcccc-ceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPL-GVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~-gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
.+|++.|.++++.+++.|++.. .+.+++.++++. .+ ..+|+ .+.+|++|| ++||.+||.|++.+
T Consensus 50 ~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~----~~-~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie 114 (171)
T TIGR03692 50 TADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWR----TD-RYLRRLEAMLIVADK-----ETSLLISGTGDVIE 114 (171)
T ss_pred HHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHh----hc-ccccccEEEEEEEcC-----CCEEEEcCCCcEec
Confidence 5899999999999999988743 366666655531 11 23344 366666644 38999999999999
Q ss_pred e--eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEE
Q 031203 81 H--KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVG 136 (164)
Q Consensus 81 ~--~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ 136 (164)
. +++++||||.+++++||.+|+ .++|+ |+++|++|+..+++||..++ +|.|-
T Consensus 115 ~~~~~~a~GSGS~~a~g~ld~~y~-~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~ 169 (171)
T TIGR03692 115 PEDGIAAIGSGGNYALAAARALLR-NTDLS---AEEIAREALKIAADICIYTNHNITIE 169 (171)
T ss_pred cCCCeEEEeCCHHHHHHHHHHhhh-cCCCC---HHHHHHHHHHHHHhhCccCCCCEEEE
Confidence 6 599999999999999999994 36677 99999999999999999888 77764
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00065 Score=51.36 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHhhhhccC------ccccceeeEEEEEcCCCCCeEEEeCCCcceeee----eEEeecCChHHHHHH
Q 031203 27 MPVDVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH----KATSAGLKEQEAINF 96 (164)
Q Consensus 27 i~~~~l~~~ls~~~q~yt~~~~------~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~----~~~aiG~~s~~~~~~ 96 (164)
.++-..+..++....+--.+.+ .--|.||+|++|.=...-|.||.+-|.|++.+. .+--||. +..-+++
T Consensus 79 ~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPi 157 (255)
T COG3484 79 PSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPI 157 (255)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchh
Confidence 3555666666665533211110 125789999999855344899999999999873 5777875 4567899
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCC
Q 031203 97 LEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 142 (164)
Q Consensus 97 Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~ 142 (164)
|++.+ .-++++||+.+.|+-.+...++.+++-+ -+.+.++.++.
T Consensus 158 ldR~i--~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 158 LDRTI--TYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhhhh--hccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 99987 5679999999999999988888888877 78888888875
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.09 Score=38.55 Aligned_cols=105 Identities=21% Similarity=0.236 Sum_probs=71.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceeee
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
++|+..|-+++..+++.|. | .+...+..+++-. ++. .-.|-+-.-++|+ |+ -.+|-+.-.|-..+.
T Consensus 54 tADaftLfe~fe~kle~~~---g---~L~raavelaKdw--r~D-k~lr~LEAmllVa--d~---~~il~isG~gdV~ep 119 (178)
T COG5405 54 TADAFTLFERFEAKLEQYQ---G---DLFRAAVELAKDW--RTD-KYLRKLEAMLLVA--DK---THILIITGNGDVIEP 119 (178)
T ss_pred chhHHHHHHHHHHHHHHcc---C---cHHHHHHHHHHhh--hhh-hHHHHHhhheeEe--CC---CcEEEEecCcceecC
Confidence 6899999999999998864 2 1222344444333 222 1245566777776 54 358888888888774
Q ss_pred --eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhh
Q 031203 82 --KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 124 (164)
Q Consensus 82 --~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~ 124 (164)
...+||||-.++.+.-...++ ++++|.+| ++.++|..+-
T Consensus 120 e~~~~aIGSGgnyAl~AarAl~~-~~~lsA~e---Ia~~sl~iA~ 160 (178)
T COG5405 120 EDDIIAIGSGGNYALSAARALME-NTELSARE---IAEKSLKIAG 160 (178)
T ss_pred CCCeEEEcCCchHHHHHHHHHHh-ccCCCHHH---HHHHHHhhhh
Confidence 489999999999999888874 45666554 5666666554
No 50
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=87.61 E-value=1.2 Score=31.62 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=39.5
Q ss_pred EEeCCCcceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHH
Q 031203 70 FKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQT 115 (164)
Q Consensus 70 y~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l 115 (164)
..+|-+|.+...++-..|.||..+-+-+-..| -..+|+||+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTew--vkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEW--VKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHH--HccccHHHHHhc
Confidence 46788999999999999999999999999988 578999999875
No 51
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=81.06 E-value=6.2 Score=26.58 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=25.5
Q ss_pred CCeEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 031203 130 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 130 ~~~iei~ii~~~~~-~~k~l~~~ei~~~l~~~~~ 162 (164)
++.+-|.|++++++ .+|.++|+++-++..+|.+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 45788999999876 5689999999998887753
No 52
>PRK08868 flagellar protein FlaG; Provisional
Probab=79.09 E-value=13 Score=26.84 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCeEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 031203 129 KASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 129 ~~~~iei~ii~~~~~-~~k~l~~~ei~~~l~~~~~ 162 (164)
.++.+-|.|++++++ .+|-++++++-++..+|.+
T Consensus 98 etgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 98 ESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 345688999998775 5889999999999988874
No 53
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=76.80 E-value=13 Score=28.21 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCC-CCeEEEEEEEcC
Q 031203 90 EQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFK-ASEIEVGVVSKE 141 (164)
Q Consensus 90 s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~-~~~iei~ii~~~ 141 (164)
-+.+...|.++| .+.|+++++..+...+|..+...-++ |+.+.+...++.
T Consensus 130 K~ia~~~lkk~~--~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYW--KPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 378899999999 48899999999999999998755444 558888887764
No 54
>PRK07738 flagellar protein FlaG; Provisional
Probab=75.77 E-value=19 Score=25.12 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCeEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 031203 130 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 130 ~~~iei~ii~~~~~-~~k~l~~~ei~~~l~~~~~ 162 (164)
++.+-|.|++++++ .+|.++|+++-+++.++.+
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 45788999998775 5889999999999888764
No 55
>PRK08452 flagellar protein FlaG; Provisional
Probab=73.08 E-value=24 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.5
Q ss_pred CCeEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 031203 130 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 130 ~~~iei~ii~~~~~-~~k~l~~~ei~~~l~~~~~ 162 (164)
.+.+-|.|++.+++ .+|.++|+++-++..++.+
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 34688999998765 5889999999988887753
No 56
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=69.26 E-value=13 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.7
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
|.+.++++++|++++|++|.+....-
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~ 46 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKH 46 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHH
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHH
Confidence 67888788899999999998876543
No 57
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=69.07 E-value=8.1 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 134 EVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 134 ei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
-|.+.+++++.|+++++++|.++...
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~ 45 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQ 45 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhh
Confidence 47888887778999999999888653
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=67.92 E-value=3.5 Score=23.66 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.9
Q ss_pred eecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 031203 85 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 119 (164)
Q Consensus 85 aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~a 119 (164)
+.|.....+...+.+... .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 468888899999998764 6889999998887764
No 59
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=60.14 E-value=22 Score=20.63 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=28.4
Q ss_pred EEeCCCcceeeeeEEeecCChHHHHHHHHHhh
Q 031203 70 FKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 101 (164)
Q Consensus 70 y~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~ 101 (164)
|.+.|+|.+...--...|+....+...|++..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999999888889999999999998865
No 60
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=57.49 E-value=55 Score=22.92 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhhcc---------CCCCeEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 031203 111 ETVQTAISTLQSVLQED---------FKASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 111 ea~~l~~~al~~~~~~d---------~~~~~iei~ii~~~~~-~~k~l~~~ei~~~l~~~~~ 162 (164)
|.++.+.+=|...++.. -..+.+-|.|++++++ .++-++|+++-++.+++.+
T Consensus 49 e~L~~~v~~ink~~k~~nt~l~F~~dd~lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~d 110 (120)
T COG1334 49 EKLALIVEDINKLLKSLNTHLNFSYDDELGELVVKIIDKDTGEVIRQIPPEEALELAARMRD 110 (120)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecccCcEEEEEEECCCCcchhhCChHHHHHHHHHHHH
Confidence 45566665565555431 1234577889998876 5778999999998887753
No 61
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.68 E-value=31 Score=27.25 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc-cCCCCeEEEEEEEcCCCcEEEcCHHHHH
Q 031203 90 EQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVVSKENPEFRVLSIEEID 154 (164)
Q Consensus 90 s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~-d~~~~~iei~ii~~~~~~~k~l~~~ei~ 154 (164)
-+.++.+|.++| .+.++++++.++...++..+... ..-|+...|..++++-..+.++-..+|+
T Consensus 131 Ke~aneflk~~l--~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie 194 (293)
T COG4079 131 KEVANEFLKDNL--TKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIE 194 (293)
T ss_pred HHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHH
Confidence 466788899988 67799999999988888877643 3345688888887653324444445543
No 62
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=56.25 E-value=16 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
|++..+++.+|+.++|+||.....
T Consensus 88 I~Wtg~~g~EFkl~dp~eVArlWG 111 (177)
T KOG3806|consen 88 IAWTGKDGLEFKLVDPDEVARLWG 111 (177)
T ss_pred eEEeCCCCceEEecCHHHHHHHHh
Confidence 667777777899999999988764
No 63
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=53.92 E-value=1.2e+02 Score=24.59 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHh-hhhc------cCccccceeeEEEEEcCCCCCeEEEeCCCcceeeeeEEeec
Q 031203 15 EAAEFRFKYGYEMPVDVLAKWIADKSQV-YTQH------AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAG 87 (164)
Q Consensus 15 ~~~~~~~~~~~~i~~~~l~~~ls~~~q~-yt~~------~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~~~~aiG 87 (164)
...+-++..|.+|..+.-+...-+.+|. |-+. -=--|-|..+...|.+....+..|.+ |. -.+.-+|
T Consensus 151 NqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~i-pk-----i~~~FtG 224 (308)
T KOG2599|consen 151 NQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLI-PK-----IDGVFTG 224 (308)
T ss_pred cchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEe-cc-----cceEEec
Confidence 3444566788888766666666555533 1100 00013344555666665332333333 21 4577789
Q ss_pred CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 88 LKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 88 ~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
.|.-+.-=.|...+++..+-++..+++.++.++..++++
T Consensus 225 TGDLfsaLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 225 TGDLFSALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 998777766666654444578999999999999888775
No 64
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=53.76 E-value=24 Score=26.80 Aligned_cols=35 Identities=11% Similarity=-0.022 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEc
Q 031203 24 GYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSID 62 (164)
Q Consensus 24 ~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d 62 (164)
...=+|+..+.-++.+++.|.+.|+.+ .++++|+.
T Consensus 42 w~~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYS 76 (192)
T PF06057_consen 42 WSERTPEQTAADLARIIRHYRARWGRK----RVVLIGYS 76 (192)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeec
Confidence 345689999999999999999988775 45778885
No 65
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=53.55 E-value=37 Score=25.87 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHH
Q 031203 111 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEID 154 (164)
Q Consensus 111 ea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~ 154 (164)
|++...++.+...+..|..+- .++|+||+-+++...+.+--+++
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~ 66 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAA 66 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHh
Confidence 566777777777776777665 89999999987633333333443
No 66
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=49.45 E-value=44 Score=20.62 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 031203 9 VQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQ 41 (164)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q 41 (164)
.+++++....+..+.|+.++.+.+|..+.--..
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~ 35 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISVE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-HH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccHH
Confidence 456677777888889999999999998764443
No 67
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=45.69 E-value=67 Score=25.89 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=44.1
Q ss_pred eeEEEEEcCCCCCeEEEeCCCcceeeeeEEeecCChHHHHHHHH-HhhcCCCCCCHHHHHHHHH
Q 031203 55 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE-KKMKNDPAFTFQETVQTAI 117 (164)
Q Consensus 55 ~~iiaG~d~~~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le-~~~~~~~~ls~eea~~l~~ 117 (164)
.+|+||+ -|+-+-.--|+|.++-.--.-.=+.+.+...-|+ +.++...+||+++|++.+-
T Consensus 98 ~FImaGy---Lg~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~svF 158 (314)
T PF05113_consen 98 DFIMAGY---LGAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSVF 158 (314)
T ss_pred cEEeecc---cCCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHhC
Confidence 6899998 3444555558999888777778888888888882 1223468999999988753
No 68
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=44.60 E-value=35 Score=20.03 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEc
Q 031203 106 AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSK 140 (164)
Q Consensus 106 ~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~ 140 (164)
.-|+|||+..|.+-|.. ....+++-|+.+
T Consensus 4 gkt~eeAi~~A~~~l~~------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGV------PREELEYEVIEE 32 (52)
T ss_dssp ESSHHHHHHHHHHHTT--------GGGEEEEEEE-
T ss_pred ECCHHHHHHHHHHHhCC------ChHHEEEEEEEc
Confidence 35899999998887752 334688888886
No 69
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=43.79 E-value=32 Score=22.38 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCH
Q 031203 107 FTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSI 150 (164)
Q Consensus 107 ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~ 150 (164)
+-.+|++..|..|+.+.. +.+.-++++|.+...++. ..+...
T Consensus 34 l~qqEvLnvA~MAvQT~Q-~~L~lNGv~V~v~~~~~~-i~V~~~ 75 (82)
T PF11773_consen 34 LQQQEVLNVAQMAVQTGQ-DHLSLNGVEVQVERTQKG-IIVYEG 75 (82)
T ss_pred HHHHHHHHHHHHHHHhCc-ceEEEcCeEEEEEEcCCe-EEEEeC
Confidence 456799999999998776 456667999999988764 554443
No 70
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=43.71 E-value=15 Score=29.58 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=36.1
Q ss_pred EEEcCCCC-CeEEEeCCCcceeeeeEEeecCC-hHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 031203 59 LSIDEECG-PRLFKCDPAGHFFGHKATSAGLK-EQEAINFLEKKMKNDPAFTFQETVQTA 116 (164)
Q Consensus 59 aG~d~~~g-p~Ly~~dp~G~~~~~~~~aiG~~-s~~~~~~Le~~~~~~~~ls~eea~~l~ 116 (164)
.|.|+.+| +-....-+.|-|+.. ..|.. -.....-|-+.|. -+++|+|+|++|.
T Consensus 78 LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~-~e~ItLE~AL~LL 133 (298)
T COG1754 78 LGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWK-PETITLEKALKLL 133 (298)
T ss_pred cccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCC-hhhCcHHHHHHHH
Confidence 35676655 445555566655543 55665 6666677777884 5689999999984
No 71
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=43.66 E-value=32 Score=23.98 Aligned_cols=35 Identities=9% Similarity=0.251 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCC
Q 031203 106 AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 143 (164)
Q Consensus 106 ~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~ 143 (164)
.+|.++|.+++..++..+.++.. .+-|+|++..+.
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g~---~v~iaVvd~~G~ 36 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERGL---PVSIAVVDAGGH 36 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT------EEEEEETTS-
T ss_pred CcCHHHHHHHHHHHHHHHHHhCC---CeEEEEEECCCC
Confidence 47899999999999998875422 388888888764
No 72
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=43.25 E-value=92 Score=20.30 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 031203 104 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 161 (164)
Q Consensus 104 ~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~~ 161 (164)
.+..|.++..+.+...... .....+.+.|++.+|.-+.+-+.+|+++.++-.+
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 3567788877776665542 2334899999999886688899999988876554
No 73
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=42.96 E-value=80 Score=21.62 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 40 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~ 40 (164)
|+.|--.+++.+|. |..+++..++++.|++.+....
T Consensus 38 LT~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 38 LTEAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 45566677777775 6677899999999999887543
No 74
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=41.89 E-value=76 Score=21.75 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=26.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADK 39 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~ 39 (164)
|+.|--.+++++|. |..+++..++++.+++.+...
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~ 73 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANK 73 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHH
Confidence 45566677777775 667789999999999988754
No 75
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=41.20 E-value=58 Score=22.11 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCHHHH
Q 031203 5 ARTLVQQARYEAAEFRFKYGY-EMPVDVL 32 (164)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~~~~-~i~~~~l 32 (164)
+..+++.+..+++.|++.+++ +++.+.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 456788889999999999988 6665544
No 76
>PRK05756 pyridoxamine kinase; Validated
Probab=40.07 E-value=44 Score=26.33 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=40.1
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEE
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVS 139 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~ 139 (164)
-.+|.|..++-.++-... .+.+.++|++.|...+..++.+-...+.-|+.++.
T Consensus 216 ~~~GaGD~f~a~~~a~l~---~g~~~~~al~~A~~~~~~~i~~~~~~~~~el~~~~ 268 (286)
T PRK05756 216 QPVGVGDLTSALFLARLL---QGGSLEEALEHTTAAVYEVMARTKERGSYELQLVA 268 (286)
T ss_pred CCCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHcCCCccceec
Confidence 558999999999999875 46899999999999988888764333334444443
No 77
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=39.96 E-value=90 Score=20.39 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccC
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY 48 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~ 48 (164)
.+|++.+.+.++...+--+-.--.+-+-+.++.-+=+.+|.|..+.|
T Consensus 42 ~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~MG 88 (95)
T PF08289_consen 42 AAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRMG 88 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHh
Confidence 36899999999998888777666777888999999999988865443
No 78
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=39.08 E-value=93 Score=25.84 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=46.6
Q ss_pred eEEEEEcCCCCCeEEEeCCCcceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 031203 56 AMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 119 (164)
Q Consensus 56 ~iiaG~d~~~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~a 119 (164)
.|+..+ ..|-++..++.-+.+.+..++++|.|+..-..-|-. +.-|.||++++|.+.
T Consensus 176 yLLVNI--GSGVSIlkV~~~~~feRvgGsSlGGGTf~GL~~LLT-----g~~sfdE~LelA~~G 232 (371)
T KOG2201|consen 176 YLLVNI--GSGVSILKVDGPDNFERVGGSSLGGGTFLGLGSLLT-----GCKSFDELLELASRG 232 (371)
T ss_pred eEEEEc--CCCeEEEEEecCCceeEecccccCCcchhhhHhHhc-----CCCCHHHHHHHHhcC
Confidence 344445 357899999999999999999999999888777765 446999999998765
No 79
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=37.43 E-value=55 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=26.8
Q ss_pred eEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 031203 132 EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 132 ~iei~ii~~~~~~~k~l~~~ei~~~l~~~~~ 162 (164)
+--|+|++.+.+.|..++++.-+.+++.++.
T Consensus 25 g~PVAILNhN~PafY~Vpa~~yE~m~e~LeD 55 (97)
T PRK09778 25 DQPVAVLSNNRPAGYLLSASAFEALMDMLAE 55 (97)
T ss_pred CCceEEecCCceeEEEeCHHHHHHHHHHHHh
Confidence 5678999999999999999998888887764
No 80
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=35.46 E-value=74 Score=24.18 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=31.2
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
.+.|.....+...+.+..+..++++.++.++.|++.|.
T Consensus 163 ~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk~l~ 200 (203)
T PRK14602 163 ANLGYGEEEARPVLKEVLEEEPDLDVGGALRAALKALA 200 (203)
T ss_pred HHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Confidence 67899999999999987533468899999999988874
No 81
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=35.10 E-value=1.6e+02 Score=22.80 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=24.5
Q ss_pred CCCeEEEeCCCcceeeeeEEeecCChHHHHHHHHHhh
Q 031203 65 CGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 101 (164)
Q Consensus 65 ~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~ 101 (164)
.-|.||.+|+.+...-..+. -|+..+..++-...
T Consensus 73 ~~P~l~~~D~~~~~i~ME~~---~g~~~vk~~i~~~~ 106 (229)
T KOG3087|consen 73 PAPRLIFIDTYGGQIYMEFI---DGASTVKDFILSTM 106 (229)
T ss_pred CCceEEEEecCCCeEEEEec---cchhHHHHHHHHHc
Confidence 35999999999998776655 55556666666654
No 82
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=34.40 E-value=1.5e+02 Score=21.30 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCC
Q 031203 104 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 143 (164)
Q Consensus 104 ~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~ 143 (164)
.+.+|++.|.+++..|+..+-+. --.+.|+|++..+.
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~G~ 41 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAGGH 41 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCCCC
Confidence 47899999999999999888643 22799999998764
No 83
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.37 E-value=62 Score=24.51 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=29.4
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 120 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al 120 (164)
.+.|.....+...+.+.....++++.++.++.|++.|
T Consensus 160 ~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aLk~l 196 (197)
T PRK14603 160 LALGFREAQVRSVVAELLAQNPEASAQTLIRKALKRL 196 (197)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 5789999999999988653345789999998888765
No 84
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=33.13 E-value=79 Score=24.23 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=34.0
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
..+|.|..++-.++-... .++++++|++.|...+..+++.
T Consensus 203 ~~~GaGDaf~a~~~~~l~---~g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 203 NNIGAGCTFASSIASQLV---KGKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred CCCChHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999988875 4689999999999999888865
No 85
>PRK13145 araD L-ribulose-5-phosphate 4-epimerase; Provisional
Probab=32.79 E-value=1.4e+02 Score=23.15 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHhhhhccC---CCCeEEE-------EEEEcCCCcEEEcCHHHH
Q 031203 107 FTFQETVQTAISTLQSVLQEDF---KASEIEV-------GVVSKENPEFRVLSIEEI 153 (164)
Q Consensus 107 ls~eea~~l~~~al~~~~~~d~---~~~~iei-------~ii~~~~~~~k~l~~~ei 153 (164)
|+.++..+.++++-....++.+ ..||+.+ .+|++.+..+..++++++
T Consensus 1 ~~~~~~r~~l~~~~r~l~~~gl~~g~~GNiS~r~~~~~~~~ItPsg~~~~~l~~~di 57 (234)
T PRK13145 1 KNLQEMRERVCAANKSLPKHGLVKFTWGNVSEVCRELGRIVIKPSGVDYDELTPENM 57 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEecCCCEEEEeCCCCCcccCCHHHE
Confidence 3556666666666666666653 3447765 457777655666777764
No 86
>PRK09732 hypothetical protein; Provisional
Probab=32.47 E-value=1.8e+02 Score=20.56 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCC
Q 031203 104 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 143 (164)
Q Consensus 104 ~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~ 143 (164)
.+.||++.|.+++..++..+.+.. -.+.|+|++..+.
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~~g---~~v~iaVvD~~G~ 40 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQKNN---WSVSIAVADDGGH 40 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhC---CCEEEEEEcCCCC
Confidence 356999999999999999887531 2799999998764
No 87
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=32.40 E-value=81 Score=24.79 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=33.9
Q ss_pred ecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcc
Q 031203 86 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED 127 (164)
Q Consensus 86 iG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d 127 (164)
+|.|..++-.++-... .+.+.+++++.|..++..++...
T Consensus 219 ~GaGD~f~A~~l~~l~---~g~~~~~al~~A~~~v~~~l~~t 257 (286)
T TIGR00687 219 VGTGDLIAALLLATLL---HGNSLKEALEKTVSAVYHVLVTT 257 (286)
T ss_pred CChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999875 56899999999999988888653
No 88
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=31.62 E-value=69 Score=25.31 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.5
Q ss_pred EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 83 ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 83 ~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
.-..|.|..++-.++-... .+.++++|++.|.+.+..++++
T Consensus 226 ~~~~GaGD~faa~~~a~l~---~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 226 TDLKGTGDLFCAELVSGLL---KGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred CCCCChhHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999988875 4689999999999998888865
No 89
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=31.61 E-value=70 Score=17.03 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=11.0
Q ss_pred CCeEEEeCCCcceeeeeEEeec
Q 031203 66 GPRLFKCDPAGHFFGHKATSAG 87 (164)
Q Consensus 66 gp~Ly~~dp~G~~~~~~~~aiG 87 (164)
|--+=.+||.|....|.+-+.|
T Consensus 5 G~l~~~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 5 GRLTSVTDPDGRTTRYTYDAAG 26 (38)
T ss_pred CCEEEEEcCCCCEEEEEECCCC
Confidence 3344445555555555544444
No 90
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=31.14 E-value=61 Score=18.15 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHhhh
Q 031203 108 TFQETVQTAISTLQSVL 124 (164)
Q Consensus 108 s~eea~~l~~~al~~~~ 124 (164)
|++||++.+..||...+
T Consensus 30 t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 30 TLEEALENAKEALELWL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 67777777777776544
No 91
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=30.40 E-value=49 Score=17.41 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.2
Q ss_pred EEcCHHHHHHHHHHhhc
Q 031203 146 RVLSIEEIDEHLTAISE 162 (164)
Q Consensus 146 k~l~~~ei~~~l~~~~~ 162 (164)
+=+.++||+.+|.++.+
T Consensus 16 rGY~~~eVD~fLd~v~~ 32 (34)
T TIGR03544 16 RGYDAAEVDAFLDRVAD 32 (34)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34889999999998875
No 92
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=30.40 E-value=90 Score=23.82 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=32.3
Q ss_pred CeEEEeCCCcceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 031203 67 PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 120 (164)
Q Consensus 67 p~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al 120 (164)
|.|--...+= ...-++++|.=.....-+|.. .+++.+||.++++++|
T Consensus 183 P~LeI~~~dV--~a~H~AtvG~idee~LFYL~S-----RGl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 183 PELEIDEDDV--KASHGATVGQIDEEQLFYLMS-----RGLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEE-SSSE--EEEEEEEEEES-HHHHHHHHC-----TT--HHHHHHHHHHHH
T ss_pred EhHhcccCCc--EEEEeeEeecCCHHHHHHHHH-----cCCCHHHHHHHHHhhC
Confidence 6554433222 334688999999999999997 3699999999998875
No 93
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=30.08 E-value=1.6e+02 Score=19.25 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH 46 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~ 46 (164)
++|++.+.+.++....--+-.--+|-+-..++.-+=..+|.|...
T Consensus 42 aa~ameiA~qa~~mi~alRsiGahp~s~~Gi~dDllEnLq~~q~~ 86 (95)
T smart00759 42 AADAMEIAEEAQQMIGALRSIGAHPKSGAGIADDLLENLKASQKG 86 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHhhh
Confidence 478999999999888877766667778888888888888877543
No 94
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=30.06 E-value=2.5e+02 Score=21.37 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=41.9
Q ss_pred ceeeEEEEEcCCCCCeEEEeCCCcceeee------eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 53 GVVAMVLSIDEECGPRLFKCDPAGHFFGH------KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 53 gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~------~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
++..++.-... .|..++. .. ..... ..-++|.|..++-+++-... .+.++++|++++..+=.
T Consensus 189 ~~~~viit~G~-~Ga~~~~--~~-~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~---~g~~~~~al~~a~~~Aa 256 (265)
T cd01947 189 FPRYLIVTEGE-LGAILYP--GG-RYNHVPAKKAKVPDSTGAGDSFAAGFIYGLL---KGWSIEEALELGAQCGA 256 (265)
T ss_pred cCCEEEEEeCC-CCeEEEE--CC-eeEECCCCCCCCCCCCCchHHHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 45667776665 4544443 22 22222 23578999999999999875 46899999999987543
No 95
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=30.05 E-value=2.7e+02 Score=21.72 Aligned_cols=68 Identities=12% Similarity=0.009 Sum_probs=42.7
Q ss_pred hCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCC--CCCeEEEeCCCcceeeeeEEeecCCh
Q 031203 23 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE--CGPRLFKCDPAGHFFGHKATSAGLKE 90 (164)
Q Consensus 23 ~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~--~gp~Ly~~dp~G~~~~~~~~aiG~~s 90 (164)
.|-++|++++.+.+++.++.-+-+-+..-=|++.|+.|+=.. +-|---..-++-++.-...-++|-..
T Consensus 49 dgp~fP~EYILrlM~swa~v~dpylRIQNTGvSVLfqG~Ftrp~~ap~~a~ta~~nnViLaSt~StglSl 118 (274)
T PHA03324 49 DGPPIPAEYILEAMNSFLNIGEAWLRIQNTGQAVIVAGCFTKNAHCGDQIWEAPAPTISLAAAKSLWVSA 118 (274)
T ss_pred cCCCCcHHHHHHHHHhhhcCCCceEEEecCceEEEEEeeecCCCCCCcceeecCCCceEeeechhccccH
Confidence 578899999999999998754433344456999999999432 12322223233444444555566443
No 96
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=29.34 E-value=99 Score=23.65 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=34.5
Q ss_pred EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 83 ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 83 ~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
...+|.|..++-.++-... .+.++++|++.|...+..++..
T Consensus 211 ~~~~GaGD~f~a~~~~~l~---~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 211 AYFNGTGDLFAALLLARLL---KGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred CCcCChHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999875 5689999999999998887753
No 97
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=28.81 E-value=1.1e+02 Score=16.68 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q 031203 24 GYEMPVDVLAKWIADKSQVYTQ 45 (164)
Q Consensus 24 ~~~i~~~~l~~~ls~~~q~yt~ 45 (164)
|..-+++.|+++++++-+-+.-
T Consensus 9 ~~~aspeel~~Y~~~L~~Y~~l 30 (36)
T PF00159_consen 9 GDFASPEELAQYYAALRHYINL 30 (36)
T ss_dssp STTSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 4456889999999988765543
No 98
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=28.46 E-value=1.5e+02 Score=18.34 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhh
Q 031203 88 LKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 125 (164)
Q Consensus 88 ~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~ 125 (164)
.|..++..++.++....+.-+.-.+-+|+.+++..+-.
T Consensus 4 r~~~Fl~~WI~e~V~~~~~~d~is~~~La~kl~adA~a 41 (64)
T PF05589_consen 4 RGIEFLDSWIAENVPDTPKADIISAAELAEKLFADAEA 41 (64)
T ss_pred hHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHHH
Confidence 35678888888887555555566667788888877653
No 99
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=28.29 E-value=2.6e+02 Score=21.07 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=31.0
Q ss_pred EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhh
Q 031203 83 ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSV 123 (164)
Q Consensus 83 ~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~ 123 (164)
.-.+|.|..++-+++-... .+++.++|+++|..+-...
T Consensus 215 vdt~GAGD~f~a~~~~~l~---~g~~~~~a~~~a~~~aa~~ 252 (254)
T cd01937 215 VDPTGAGDVFLAAFLYSRL---SGKDIKEAAEFAAAAAAKF 252 (254)
T ss_pred ccCCCchHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHH
Confidence 3558999999999999886 4689999999998875543
No 100
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=28.21 E-value=2e+02 Score=19.61 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHH---HHHHhhhhcc-CCC-----CeEEEEEEEcCCCcEEE-----cCHHHHHHHHHHhhc
Q 031203 106 AFTFQETVQTAI---STLQSVLQED-FKA-----SEIEVGVVSKENPEFRV-----LSIEEIDEHLTAISE 162 (164)
Q Consensus 106 ~ls~eea~~l~~---~al~~~~~~d-~~~-----~~iei~ii~~~~~~~k~-----l~~~ei~~~l~~~~~ 162 (164)
.+|.|.++.... ++++.+.++. ... +..-+.+..+++.+-++ =+++||+.||..+++
T Consensus 17 ALs~E~v~~aL~dAlR~~~s~~~s~ei~~~~~~~~~~y~~v~~~ekeg~~i~~g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 17 ALSPEAVEVALYDALRIFRSIIDSAEIDKSQVEEGRRYIAVIVKEKEGNYIIVGYLPTDEEVEDFLDDVER 87 (105)
T ss_pred hcCHHHHHHHHHHHHHHHHHHhccccccccccccCccccceeeccCCCCEEecCCCCChHHHHHHHHHHHH
Confidence 367666665544 4445555431 222 23334444333211232 246689999987753
No 101
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=27.81 E-value=60 Score=26.80 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=31.9
Q ss_pred eeEEEEEcCCCCCeEEEeCCCcceeeee--EEeecCChHHHHHHHHHhh
Q 031203 55 VAMVLSIDEECGPRLFKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKM 101 (164)
Q Consensus 55 ~~iiaG~d~~~gp~Ly~~dp~G~~~~~~--~~aiG~~s~~~~~~Le~~~ 101 (164)
+.+-||+|. +|.||..|..|...... ...-++++....+.+++..
T Consensus 262 ~vv~ag~~c--~P~lf~~~~~~~l~~~~~ld~p~~s~s~~lt~a~~kF~ 308 (361)
T KOG1523|consen 262 SVVAAGYDC--GPVLFVTDEEGGLSFARRLDAPKASSSSPLTSAWRKFL 308 (361)
T ss_pred ceeecCCCC--CceEEEeccccceeeehhcCCccccCCchhHHHHHHHh
Confidence 456678875 79999999999766643 4566666666666666643
No 102
>COG5418 Predicted secreted protein [Function unknown]
Probab=27.62 E-value=2.1e+02 Score=20.92 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCc
Q 031203 30 DVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAG 76 (164)
Q Consensus 30 ~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G 76 (164)
+.++..|++++|++ +|=|..+++.|+-....--+|.+..+|
T Consensus 80 ~ki~~pi~~~l~e~------k~d~~kii~IGV~~SpTCgVy~tt~~~ 120 (164)
T COG5418 80 RKIADPIGRVLEEE------KPDGIKIIFIGVKGSPTCGVYTTTSSD 120 (164)
T ss_pred HHHHHHHHHHHHHh------CcCCceEEEEecCCCCccceEeccCCC
Confidence 44555666666654 477889999999543233466664444
No 103
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=27.59 E-value=1.1e+02 Score=16.60 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q 031203 24 GYEMPVDVLAKWIADKSQVYT 44 (164)
Q Consensus 24 ~~~i~~~~l~~~ls~~~q~yt 44 (164)
|..-+++.++++++++-|-+.
T Consensus 9 g~~a~~e~l~~Y~~~L~~Yin 29 (36)
T smart00309 9 GDDASPEDLRQYLAALREYIN 29 (36)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 566789999999998876443
No 104
>PRK07105 pyridoxamine kinase; Validated
Probab=27.12 E-value=1.2e+02 Score=23.80 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=34.8
Q ss_pred EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 83 ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 83 ~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
.-.+|.|..++-.++-... .+.++++|++.|...+..++.+
T Consensus 215 ~~~~GaGD~f~aa~~~~l~---~g~~l~~av~~A~~~~~~~i~~ 255 (284)
T PRK07105 215 AHYPGTGDIFTSVITGSLL---QGDSLPIALDRAVQFIEKGIRA 255 (284)
T ss_pred CCcCChhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHH
Confidence 3458999999999998875 5689999999999999888865
No 105
>PRK12412 pyridoxal kinase; Reviewed
Probab=26.68 E-value=1.1e+02 Score=23.92 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=32.9
Q ss_pred ecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 86 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 86 iG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
+|.|..++-.++-... .++++++|++.|...+..++.+
T Consensus 209 ~GaGD~f~aa~aa~l~---~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 209 HGAGCTYSAAITAELA---KGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred CchHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999988775 5689999999999999888865
No 106
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=26.17 E-value=1.2e+02 Score=16.47 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q 031203 24 GYEMPVDVLAKWIADKSQVYT 44 (164)
Q Consensus 24 ~~~i~~~~l~~~ls~~~q~yt 44 (164)
|..-+++.++++++++-|-+.
T Consensus 9 g~~a~~eel~~Y~~~L~~Yin 29 (36)
T cd00126 9 GDDASPEELRQYLAALREYIN 29 (36)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 456789999999998876443
No 107
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=25.75 E-value=46 Score=24.47 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCeEEEeCCCcceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhh
Q 031203 66 GPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 125 (164)
Q Consensus 66 gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~ 125 (164)
|-.+..-=|+|++...-+.--|.|.+.+++.+.=. .+-+|-++|+.+|..|+..++.
T Consensus 80 G~k~~~~lP~G~~~F~~~~~~~~G~y~sCSLfSPm---~~f~~~~~A~~~A~a~l~~lls 136 (159)
T PRK10465 80 GEKLGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL---DPSLSAEQGVRLADDCARMLLS 136 (159)
T ss_pred cceEEEecCCceEEEEeecCCCCcceeEeeccCCc---ccccCHHHHHHHHHHHHHHHhc
Confidence 44455566899887777777788888888877765 3568999999999999998874
No 108
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=25.20 E-value=1.8e+02 Score=19.89 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031203 2 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADK 39 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~ 39 (164)
+.+--.+++.+| .|..+++..++++.+++.+...
T Consensus 40 td~HW~vI~flR----~~y~~~~~~P~~R~l~K~~~~~ 73 (109)
T PF04358_consen 40 TDEHWEVIRFLR----DYYQEYGVSPAIRMLIKALGED 73 (109)
T ss_dssp -HHHHHHHHHHH----HHHHHHSS---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHhhh
Confidence 344556666665 5777789999999999998766
No 109
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.98 E-value=1.7e+02 Score=17.80 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q 031203 15 EAAEFRFKYGYEMPVDVLAKWIA 37 (164)
Q Consensus 15 ~~~~~~~~~~~~i~~~~l~~~ls 37 (164)
....|-..+|.++++..++..+.
T Consensus 14 ~I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 14 FIREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHhC
Confidence 44566677999999999888764
No 110
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=24.89 E-value=54 Score=29.14 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 031203 107 FTFQETVQTAISTLQSVL 124 (164)
Q Consensus 107 ls~eea~~l~~~al~~~~ 124 (164)
||+.||++|+++|...+-
T Consensus 452 MTI~EAv~LVlqA~a~~~ 469 (588)
T COG1086 452 MTIPEAVQLVLQAGAIAK 469 (588)
T ss_pred EEHHHHHHHHHHHHhhcC
Confidence 889999999999987643
No 111
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=24.54 E-value=91 Score=26.86 Aligned_cols=65 Identities=15% Similarity=-0.038 Sum_probs=43.0
Q ss_pred eeeEEEEEcCCCCCeEEEeCCCcceeeeeEEeecCChHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHH
Q 031203 54 VVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTL 120 (164)
Q Consensus 54 v~~iiaG~d~~~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~~-~~~~ls~eea~~l~~~al 120 (164)
+-+|++|.|. ++. +-...+.-.-......++|.....+...|++.-. ....-++++|+..+....
T Consensus 346 v~lI~GG~~K-g~d-f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDDK-GAD-FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCCC-CCC-hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 6788888887 333 3333333333334589999999999999998731 244578888888766544
No 112
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=24.54 E-value=68 Score=22.28 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=30.1
Q ss_pred eCCCcceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhh
Q 031203 72 CDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 125 (164)
Q Consensus 72 ~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~ 125 (164)
.||+|+....+..-.|.....+--.|.... -+.+..|.+++|.+.|+....
T Consensus 11 ~~~dGsv~~T~ViL~~~dGa~ip~~L~~D~---~~ks~~ELi~~ale~iy~e~~ 61 (116)
T PF07104_consen 11 YDPDGSVSKTKVILTNDDGAYIPVFLPGDK---IDKSNTELIELALEMIYQENF 61 (116)
T ss_pred cCCCCCeeeeEEEEEcCCCcEEEeeCChhh---hcCCHHHHHHHHHHHHHHHhc
Confidence 466777766666555554333333344332 456777888887777765543
No 113
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=23.81 E-value=1.1e+02 Score=16.18 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=5.3
Q ss_pred CCeEEEeCCCcc
Q 031203 66 GPRLFKCDPAGH 77 (164)
Q Consensus 66 gp~Ly~~dp~G~ 77 (164)
|-.+-.+||.|.
T Consensus 26 Grl~~~tdp~g~ 37 (42)
T TIGR01643 26 GRLVEITDADGG 37 (42)
T ss_pred CCEEEEECCCCC
Confidence 344444444444
No 114
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=23.60 E-value=1.4e+02 Score=22.46 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=32.9
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhh
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 125 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~ 125 (164)
...|.|..++-.++-... .++++++|++.|...+..+++
T Consensus 202 ~~~GaGD~f~a~l~a~l~---~g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 202 NTHGTGCTLSSAIAANLA---KGLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred CCCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHH
Confidence 447999999998888875 468999999999999988774
No 115
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=23.35 E-value=2.1e+02 Score=22.04 Aligned_cols=44 Identities=7% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhccC---CCCeEEE-------EEEEcCCCcEEEcCHHHH
Q 031203 110 QETVQTAISTLQSVLQEDF---KASEIEV-------GVVSKENPEFRVLSIEEI 153 (164)
Q Consensus 110 eea~~l~~~al~~~~~~d~---~~~~iei-------~ii~~~~~~~k~l~~~ei 153 (164)
++..+.++++-+.+.++.+ .+||+.+ .+||+.+..+..+++++|
T Consensus 3 ~~~~~ei~~~~~~l~~~gl~~~~~GNiS~R~~~~~~~lITPsG~~~~~l~~~di 56 (231)
T TIGR00760 3 EQLKKEVLEANLALPKHQLVTFTWGNVSAIDRERGLVVIKPSGVEYDVMTADDM 56 (231)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCeEEEEecCCCEEEEeCCCCChhhCCHHHE
Confidence 3444444554444554443 3557766 467877654666777765
No 116
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.31 E-value=1.5e+02 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=29.5
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
.+.|.....+...+.+.. .++++.++.++.|++.|.
T Consensus 151 ~~LGy~~~ea~~av~~~~--~~~~~~e~lik~ALk~l~ 186 (188)
T PRK14606 151 VSLGYPEKQAREAVKHVY--REGMKTSELIKEALKFLS 186 (188)
T ss_pred HHcCCCHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHh
Confidence 578999999999998874 347899999999888773
No 117
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=23.25 E-value=1.1e+02 Score=22.02 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHH
Q 031203 3 ADARTLVQQARYEAAEFRFKYGYEM-PVDVLAK 34 (164)
Q Consensus 3 ~D~~~l~~~~~~~~~~~~~~~~~~i-~~~~l~~ 34 (164)
.|.+.|.+++...++.....++-+| +|+.|+.
T Consensus 39 ~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~ 71 (143)
T COG5469 39 SDGSILLDKLQELAQEWEIAHEFEIQTVECLAA 71 (143)
T ss_pred CcHHHHHHHHHHHHhhhhhhccceeeeeHhhhh
Confidence 5888999999999999999988887 5565543
No 118
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=23.14 E-value=3.9e+02 Score=22.54 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEE
Q 031203 104 DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 147 (164)
Q Consensus 104 ~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~ 147 (164)
..+++.+..++....||..++.+..... ++++- |+.+++.+++
T Consensus 14 eK~I~~e~i~~aie~Al~~a~kK~~~~~~~~~V~-id~~tG~i~v 57 (374)
T PRK12328 14 EKGLPIEMVKEAVKEALIKTAKKELGPEYEYDVE-IDPENKTLKL 57 (374)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHhcCCcccEEEE-EECCCCeEEE
Confidence 4689999999999999999998877655 66654 3444444443
No 119
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=23.06 E-value=1.8e+02 Score=21.82 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhhhhccC---CCCeEEE------EEEEcCCCcEEEcCHHHH
Q 031203 107 FTFQETVQTAISTLQSVLQEDF---KASEIEV------GVVSKENPEFRVLSIEEI 153 (164)
Q Consensus 107 ls~eea~~l~~~al~~~~~~d~---~~~~iei------~ii~~~~~~~k~l~~~ei 153 (164)
|+++++.+....+......+.. .+|++.+ .+|+..|..+..++++++
T Consensus 1 ~~~~~~~~~l~~~~r~l~~~Gl~~~~~GNiSvr~~~~~~lItpsG~~~~~l~~~di 56 (204)
T PRK09220 1 MTLEELLQQLIAAGRWIGARGWVPATSGNMSVRLDEQHCAITVSGKDKGSLTAEDF 56 (204)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEcCCCEEEEECCCCChhHCChhhE
Confidence 5667777776776666665543 3456655 356665543445555553
No 120
>PRK12616 pyridoxal kinase; Reviewed
Probab=23.04 E-value=1.4e+02 Score=23.41 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=33.1
Q ss_pred eecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 85 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 85 aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
.+|.|..++-.++-... .++++++|++.|...+..++.+
T Consensus 211 t~GaGD~fsaalaa~l~---~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 211 THGAGCTFSAAVTAELA---KGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHH
Confidence 37999999999988875 5689999999999988888865
No 121
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=22.86 E-value=2.6e+02 Score=19.15 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEE
Q 031203 104 DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 147 (164)
Q Consensus 104 ~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~ 147 (164)
..+++.+..+.....||..++.+..++. ++++-+ +.+++.+++
T Consensus 12 ek~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~i-d~~~g~i~v 55 (122)
T PF08529_consen 12 EKGIDKEVVIEALEEALIKAYKKKYGPEANIRVEI-DEDTGEIKV 55 (122)
T ss_dssp CCTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEEE-ETTTTEEEE
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEEE-ECCCCeEEE
Confidence 5689999999999999999998877555 666654 444444443
No 122
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=22.63 E-value=1.3e+02 Score=23.68 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=25.7
Q ss_pred cCCCCCeEEEeCCCcceeeeeEEeecCChHHHHHHHHH
Q 031203 62 DEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 99 (164)
Q Consensus 62 d~~~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~ 99 (164)
++...+++|-+|+.|-+ ++++.|..+..=...|-+
T Consensus 213 ~N~~~GYvyLVD~~grI---RWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 213 NNSYVGYVYLVDPNGRI---RWAGSGPATPEELESLWK 247 (252)
T ss_pred CCCCcCeEEEECCCCeE---EeCccCCCCHHHHHHHHH
Confidence 34457899999999987 677778877755555544
No 123
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=22.57 E-value=75 Score=21.53 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=13.4
Q ss_pred CCCeEEEeCCCcceee
Q 031203 65 CGPRLFKCDPAGHFFG 80 (164)
Q Consensus 65 ~gp~Ly~~dp~G~~~~ 80 (164)
.+|+||.+||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 4699999999987654
No 124
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=22.35 E-value=3.9e+02 Score=20.95 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=44.0
Q ss_pred ceeeEEEEEcCCCCCeEEEeCCCcceeeee-------EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhh
Q 031203 53 GVVAMVLSIDEECGPRLFKCDPAGHFFGHK-------ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 125 (164)
Q Consensus 53 gv~~iiaG~d~~~gp~Ly~~dp~G~~~~~~-------~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~ 125 (164)
++..+|.-... .|-.++. ..+ ..... .-.+|.|..++-+++-... .++++++|++++..+-.....
T Consensus 233 g~~~vvvt~G~-~G~~~~~--~~~-~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~---~g~~~~~a~~~a~~~Aa~~v~ 305 (312)
T cd01168 233 RCRIVVITQGA-KGAVVVE--GGE-VYPVPAIPVEKIVDTNGAGDAFAGGFLYGLV---QGEPLEECIRLGSYAAAEVIQ 305 (312)
T ss_pred CCCEEEEecCC-CCeEEEE--CCE-EEeCCCCCCCCcccCCchHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHh
Confidence 45667777765 4444433 222 22221 2458999999999999875 568999999999887655543
No 125
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=22.21 E-value=1.2e+02 Score=15.63 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=15.7
Q ss_pred eeEEEEEcCCCCCeEEEeCCCcc
Q 031203 55 VAMVLSIDEECGPRLFKCDPAGH 77 (164)
Q Consensus 55 ~~iiaG~d~~~gp~Ly~~dp~G~ 77 (164)
+..+.|.-+ +.|.||.+-.+|.
T Consensus 5 ~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC-CCcEEEEeeccCc
Confidence 344556666 6799999988874
No 126
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=22.20 E-value=3.7e+02 Score=20.69 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=40.3
Q ss_pred eeeEEEEEcCCCCCeEEEeCCCcceeee------eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 54 VVAMVLSIDEECGPRLFKCDPAGHFFGH------KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 54 v~~iiaG~d~~~gp~Ly~~dp~G~~~~~------~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
+..++.-... .|..++. +.|..... ..-.+|.|..++-++|-... .+.+.++|+++|..+=.
T Consensus 215 ~~~vvvt~G~-~Ga~~~~--~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~---~g~~~~~a~~~a~a~aa 282 (289)
T cd01944 215 AAPVVVRLGS-NGAWIRL--PDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLA---KGMSLADAVLLANAAAA 282 (289)
T ss_pred CCeEEEEECC-CcEEEEe--cCCCeEEecCCCCCCccCCCchHHHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 4456666654 4444433 23432221 13469999999999999875 56899999999887643
No 127
>KOG3284 consensus Vacuolar sorting protein VPS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.98 E-value=1.1e+02 Score=23.26 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHhCCCCCHHH----------HHHHHHHHHHhhh
Q 031203 17 AEFRFKYGYEMPVDV----------LAKWIADKSQVYT 44 (164)
Q Consensus 17 ~~~~~~~~~~i~~~~----------l~~~ls~~~q~yt 44 (164)
..++++.|+|++++. .++.|+...|.|-
T Consensus 94 Ai~Ri~~~~piT~e~~ia~s~dk~~~ak~IAe~v~nFI 131 (213)
T KOG3284|consen 94 AIERIREGRPITVEDRIAPSADKGNSAKCIAEIVQNFI 131 (213)
T ss_pred HHHHHHcCCCCcccccccccCCcccHHHHHHHHHHHHH
Confidence 456788999999877 7888888887664
No 128
>COG0235 AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism]
Probab=21.46 E-value=2.5e+02 Score=21.36 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHhhhhcc---CCCCeEEE-------EEEEcCCCcEEEcCHHHH
Q 031203 107 FTFQETVQTAISTLQSVLQED---FKASEIEV-------GVVSKENPEFRVLSIEEI 153 (164)
Q Consensus 107 ls~eea~~l~~~al~~~~~~d---~~~~~iei-------~ii~~~~~~~k~l~~~ei 153 (164)
+..++..+.+.++......+. ..+++|.+ .+|++.|..+..++++++
T Consensus 3 ~~~~~~~~~l~~~~~~l~~~g~~~~t~GniS~r~~~~~~~~ItpsG~~~~~lt~~dl 59 (219)
T COG0235 3 MMLEKLRQELAKAARLLARRGLVEGTAGNISVRLPEGGLFLITPSGVPFGELTADDL 59 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCcCCceEEEEcCCCceEEEeCCCCccccCcHHHe
Confidence 345566666666666666553 34557665 778888766778888764
No 129
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=21.28 E-value=3.4e+02 Score=19.92 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=45.5
Q ss_pred CCeEEEeCCCcceeeeeEEeec-CChHHHHHHHHHhhcC------------------CCCCCHHHHHHHHHHHHHhhhhc
Q 031203 66 GPRLFKCDPAGHFFGHKATSAG-LKEQEAINFLEKKMKN------------------DPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 66 gp~Ly~~dp~G~~~~~~~~aiG-~~s~~~~~~Le~~~~~------------------~~~ls~eea~~l~~~al~~~~~~ 126 (164)
+-.+-.+.|-|+-....-...| ..++.+...|++-++. -.+.|++.|.+.|.+-|...+..
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4567888899999888888888 6677777777664321 24688999999999988766543
No 130
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=20.93 E-value=2.6e+02 Score=21.70 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhhc--cCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 031203 105 PAFTFQETVQTAISTLQSVLQE--DFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 161 (164)
Q Consensus 105 ~~ls~eea~~l~~~al~~~~~~--d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~~ 161 (164)
.+++..++-....+++..+++- +++-..+.++.++-++ |++ +++||+.+..-+.
T Consensus 17 ~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN--~~R-p~~EV~~Lm~L~~ 72 (226)
T TIGR00055 17 KGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTEN--WKR-PKEEVDFLMELFE 72 (226)
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh--cCc-CHHHHHHHHHHHH
Confidence 3466666777766666666542 4555578899998876 775 8889887655443
No 131
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=20.82 E-value=2.9e+02 Score=18.89 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031203 3 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 40 (164)
Q Consensus 3 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~ 40 (164)
.+-=.+++++| .|...++..++++-|++.+++.+
T Consensus 43 ~eHWevv~fvR----~fy~ef~tsPaiRMLvK~~~~~~ 76 (111)
T COG2920 43 EEHWEVVRFVR----EFYEEFNTSPAIRMLVKAMAKKL 76 (111)
T ss_pred HHHHHHHHHHH----HHHHHHCCCchHHHHHHHHHHHh
Confidence 33345555555 57778999999999888887544
No 132
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=20.75 E-value=2.9e+02 Score=18.94 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=44.1
Q ss_pred EEcCCCCCeE---EEeCCC-cceeeeeEEeecCC-hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhh
Q 031203 60 SIDEECGPRL---FKCDPA-GHFFGHKATSAGLK-EQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 125 (164)
Q Consensus 60 G~d~~~gp~L---y~~dp~-G~~~~~~~~aiG~~-s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~ 125 (164)
+.++.-|-.+ ..+|.+ |.+...++-+.|.. +..+..++-+.. .+.|++||.++..+-+...+.
T Consensus 29 ~~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i---~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 29 AGNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELI---KGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHH---TTSBHHHHHCHHHHHHHHHHT
T ss_pred ecCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHh
Confidence 4455456555 567887 78888899999977 555555555554 568999998887766666654
No 133
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=20.73 E-value=3.4e+02 Score=19.70 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=54.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHhhhhccCcccc-ceeeEEEEEcCC--CCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVD--VLAKWIADKSQVYTQHAYMRPL-GVVAMVLSIDEE--CGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~--~l~~~ls~~~q~yt~~~~~rP~-gv~~iiaG~d~~--~gp~Ly~~dp~ 75 (164)
|-+|++.+...+...++.++..-|.....+ .-...|.+++|. --|. |...-+-||.+. -||.+.++.|.
T Consensus 4 ~vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS------~~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ 77 (157)
T KOG2449|consen 4 MVGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQS------EDPLDGRFIYLPGYAEGNFVGPTILSVTPN 77 (157)
T ss_pred EechhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcC------cCccCCceEEeeccccCCcccceEEEecCC
Confidence 357899999999999999999999887554 344556666542 1355 445557788664 37999999998
Q ss_pred cceeee
Q 031203 76 GHFFGH 81 (164)
Q Consensus 76 G~~~~~ 81 (164)
-+++..
T Consensus 78 ms~yke 83 (157)
T KOG2449|consen 78 MSCYKE 83 (157)
T ss_pred cceeHh
Confidence 887664
No 134
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=20.68 E-value=2.2e+02 Score=17.50 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 031203 105 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 161 (164)
Q Consensus 105 ~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~~ 161 (164)
.+.|.++....+...+... ...+.+.+.+.+|..+.+-+.+++...+....
T Consensus 20 ~~~s~~~L~~~i~~~~~~~------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 20 SDVSFDDLRSKIREKFGLL------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp STSHHHHHHHHHHHHHTTS------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 4567777777766655432 45899999999886677778888998887664
No 135
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=20.45 E-value=65 Score=27.54 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.4
Q ss_pred HhhcCCCCCCHHHHHHHHHH
Q 031203 99 KKMKNDPAFTFQETVQTAIS 118 (164)
Q Consensus 99 ~~~~~~~~ls~eea~~l~~~ 118 (164)
|.| |+|++|.|+||.|..+
T Consensus 212 KyW-YKP~isREQAIalLrd 230 (483)
T KOG1930|consen 212 KYW-YKPNISREQAIALLRD 230 (483)
T ss_pred ccc-cCCCCCHHHHHHHhhc
Confidence 456 7899999999998554
No 136
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=20.43 E-value=2.7e+02 Score=21.49 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhc--cCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 105 PAFTFQETVQTAISTLQSVLQE--DFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 105 ~~ls~eea~~l~~~al~~~~~~--d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
.+++..++-..+.+.+....+- +.+-+.+.++.++.++ |++ +++||+.+..-+
T Consensus 18 ~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN--~~R-~~~EV~~Lm~l~ 72 (221)
T cd00475 18 RGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTEN--WKR-PKEEVDFLMELF 72 (221)
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhh--hCc-CHHHHHHHHHHH
Confidence 3466667777777766666542 4455578899888876 775 888887665544
No 137
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.36 E-value=2.6e+02 Score=18.28 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 89 KEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 89 ~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
+-..+..+|++.. +|++|+++.+++=..++.
T Consensus 30 klerakeiLe~Ln--dpeisL~eSvkLYkeG~~ 60 (86)
T PRK14065 30 HVHSLEQAIDRLN--DPNLSLKDGMDLYKTAMQ 60 (86)
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Confidence 3456777788775 688888888887665554
No 138
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=20.31 E-value=1.8e+02 Score=22.42 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=33.6
Q ss_pred eecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc
Q 031203 85 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE 126 (164)
Q Consensus 85 aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~ 126 (164)
.+|.|..++-.++-... .+++++||++.|...+..++..
T Consensus 202 ~~GaGD~f~aalaa~la---~g~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 202 THGTGCTLSAAIAANLA---KGLSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred CCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999988775 5689999999999999888865
No 139
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=20.30 E-value=2.5e+02 Score=21.20 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031203 5 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 40 (164)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~ 40 (164)
+|.+++++.+.+.......+....+-...+.||+++
T Consensus 125 ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlL 160 (184)
T COG2096 125 ARTVARRAERRLVALSREEEANLVVLKYLNRLSDLL 160 (184)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 688999999888887777777777777789999998
No 140
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.09 E-value=1.1e+02 Score=26.11 Aligned_cols=89 Identities=19% Similarity=0.337 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCC-------CCCeEEEeCCCcceeeeeEEeecCChHHH-HHHHHH
Q 031203 28 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-------CGPRLFKCDPAGHFFGHKATSAGLKEQEA-INFLEK 99 (164)
Q Consensus 28 ~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~-------~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~-~~~Le~ 99 (164)
|...||..|+...+..++.-|.| |..|++|.|-. ..|++..-.| |.....--..=|..-..+ .=.|+.
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr---~~~lvGG~~m~~q~~~L~kkPhilVaTP-GrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLR---VAVLVGGMDMMLQANQLSKKPHILVATP-GRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeE---EEEEecCchHHHHHHHhhcCCCEEEeCc-HHHHHHHHhccCccHHHhHHHhhch
Confidence 66999999999988887765544 89999999732 4688754333 333332111122221111 111222
Q ss_pred hhcCCCCCCHHHHHHHHHHHHH
Q 031203 100 KMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 100 ~~~~~~~ls~eea~~l~~~al~ 121 (164)
.-+ .-||+.++-+.-+++.+-
T Consensus 213 ADr-lLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 213 ADR-LLDMDFEEELDYILKVIP 233 (476)
T ss_pred HHh-hhhhhhHHHHHHHHHhcC
Confidence 111 235777777777666553
No 141
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.07 E-value=1.3e+02 Score=19.36 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=13.6
Q ss_pred CCCeEEEeCCCcceeee
Q 031203 65 CGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 65 ~gp~Ly~~dp~G~~~~~ 81 (164)
.|...+-.||+|+..+.
T Consensus 96 ~g~~~~~~DPdGn~ie~ 112 (114)
T cd07261 96 FGYTFVALDPDGHRLRV 112 (114)
T ss_pred CccEEEEECCCCCEEEe
Confidence 45678999999998764
No 142
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=20.05 E-value=2.6e+02 Score=20.16 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHhhhh
Q 031203 1 MTADARTLVQQARYEAAEFRF--KYGYEMPVDVLAKWIADKSQVYTQ 45 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~--~~~~~i~~~~l~~~ls~~~q~yt~ 45 (164)
|.+.++.+++.+...+....- ..|..++++.+-..+......|..
T Consensus 74 L~peak~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~yka 120 (154)
T PF05823_consen 74 LSPEAKAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKA 120 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHc
Confidence 457788888877776543333 368888888887777777666643
Done!