Query 031203
Match_columns 164
No_of_seqs 106 out of 1076
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 5.5E-41 1.9E-45 260.8 19.7 162 1-164 77-243 (243)
2 1iru_A 20S proteasome; cell cy 100.0 3.3E-40 1.1E-44 256.8 20.7 164 1-164 83-246 (246)
3 1iru_C 20S proteasome; cell cy 100.0 4.8E-39 1.6E-43 252.3 20.2 161 1-163 79-243 (261)
4 1ryp_C 20S proteasome; multica 100.0 1.1E-38 3.7E-43 247.9 21.0 160 1-162 79-243 (244)
5 1iru_B 20S proteasome; cell cy 100.0 9.2E-39 3.1E-43 246.8 19.9 156 1-161 78-233 (233)
6 1ryp_E 20S proteasome; multica 100.0 6.9E-39 2.3E-43 248.8 18.0 160 1-163 73-238 (242)
7 1ryp_D 20S proteasome; multica 100.0 2E-38 6.9E-43 246.1 19.9 160 1-163 76-237 (241)
8 3h4p_A Proteasome subunit alph 100.0 2.3E-39 7.8E-44 254.5 14.2 158 1-162 85-242 (264)
9 3h4p_a Proteasome subunit beta 100.0 1.8E-38 6.2E-43 243.2 18.1 155 1-163 49-205 (219)
10 1iru_F 20S proteasome; cell cy 100.0 1.2E-38 4.2E-43 250.3 16.4 159 1-161 77-237 (263)
11 1yar_A Proteasome alpha subuni 100.0 3.4E-38 1.2E-42 243.6 18.4 153 1-157 81-233 (233)
12 1iru_D 20S proteasome; cell cy 100.0 3.2E-38 1.1E-42 246.0 17.8 158 1-163 76-235 (248)
13 1j2p_A Alpha-ring, proteasome 100.0 1.5E-37 5E-42 241.9 20.6 156 1-162 81-238 (246)
14 1iru_G 20S proteasome; cell cy 100.0 6.1E-38 2.1E-42 245.1 18.1 159 1-161 80-240 (254)
15 3mi0_A Proteasome subunit alph 100.0 1E-37 3.6E-42 243.0 18.8 157 1-161 67-238 (248)
16 1ryp_F 20S proteasome; multica 100.0 1.9E-38 6.6E-43 245.0 14.1 154 1-157 76-233 (233)
17 1j2q_H Proteasome beta subunit 100.0 3.5E-37 1.2E-41 233.1 19.3 152 1-161 48-201 (202)
18 1iru_E 20S proteasome; cell cy 100.0 1.4E-37 4.7E-42 241.4 17.1 156 1-160 81-241 (241)
19 1ryp_B 20S proteasome; multica 100.0 4.7E-37 1.6E-41 239.6 19.5 158 1-160 78-250 (250)
20 1yar_H Proteasome beta subunit 100.0 1.6E-36 5.6E-41 232.0 20.5 152 1-161 56-208 (217)
21 1q5q_H Proteasome beta-type su 100.0 1.2E-36 4E-41 235.4 19.7 157 1-162 48-219 (235)
22 3nzj_F Proteasome component C1 100.0 1.8E-36 6.3E-41 240.4 20.8 155 1-156 81-239 (288)
23 1ryp_L 20S proteasome; multica 100.0 8.1E-37 2.8E-41 232.8 17.1 154 1-162 48-202 (212)
24 1ryp_G 20S proteasome; multica 100.0 4.5E-36 1.5E-40 233.3 19.7 157 1-160 77-238 (244)
25 1iru_H 20S proteasome; cell cy 100.0 4.2E-37 1.4E-41 233.2 13.3 152 1-159 48-200 (205)
26 1iru_L 20S proteasome; cell cy 100.0 3.1E-36 1.1E-40 228.2 17.4 153 1-162 48-201 (204)
27 1q5q_A Proteasome alpha-type s 100.0 4.8E-36 1.7E-40 235.0 15.8 159 1-163 67-238 (259)
28 3nzj_K Proteasome component PR 100.0 6.5E-36 2.2E-40 237.1 16.7 155 1-163 123-278 (287)
29 1q5r_H Proteasome beta-type su 100.0 4E-35 1.4E-39 233.3 19.8 157 1-162 113-284 (294)
30 1ryp_K 20S proteasome; multica 100.0 9.4E-35 3.2E-39 219.1 17.4 144 1-150 49-194 (198)
31 2jay_A Proteasome; hydrolase; 100.0 9.8E-35 3.4E-39 230.8 17.3 157 1-162 105-276 (291)
32 1iru_N 20S proteasome; cell cy 100.0 1.8E-35 6.1E-40 226.4 12.4 150 2-156 57-208 (219)
33 1ryp_N 20S proteasome; multica 100.0 1.1E-35 3.7E-40 229.6 10.2 153 1-156 56-217 (233)
34 3unf_H Proteasome subunit beta 100.0 1.5E-34 5.2E-39 223.5 15.5 144 1-154 48-192 (234)
35 1iru_M 20S proteasome; cell cy 100.0 9.3E-34 3.2E-38 215.9 18.2 139 1-143 57-203 (213)
36 3unf_N Proteasome subunit beta 100.0 8.3E-35 2.8E-39 219.5 11.8 149 1-158 48-198 (199)
37 1ryp_J 20S proteasome; multica 100.0 3.9E-33 1.3E-37 211.2 18.7 142 1-148 55-199 (204)
38 1g0u_M Proteasome component PR 100.0 9.2E-35 3.1E-39 228.5 9.8 153 1-156 89-250 (266)
39 1ryp_M 20S proteasome; multica 100.0 4.4E-33 1.5E-37 213.6 18.5 139 1-143 57-212 (222)
40 1iru_K 20S proteasome; cell cy 100.0 3E-33 1E-37 211.4 17.3 143 1-149 49-192 (201)
41 1ryp_I 20S proteasome; multica 100.0 4E-33 1.4E-37 213.9 18.1 140 1-149 48-188 (222)
42 1iru_J 20S proteasome; cell cy 100.0 5E-33 1.7E-37 210.7 18.0 143 1-149 56-201 (205)
43 1ryp_H 20S proteasome; multica 100.0 8E-33 2.7E-37 209.7 17.0 140 1-148 57-197 (205)
44 3nzj_H Proteasome component PU 100.0 1.7E-32 5.8E-37 215.0 18.0 140 1-149 77-217 (261)
45 1iru_I 20S proteasome; cell cy 100.0 5E-32 1.7E-36 209.3 17.4 140 1-150 48-188 (234)
46 1m4y_A ATP-dependent protease 99.9 4.4E-24 1.5E-28 157.4 12.1 120 1-138 49-171 (171)
47 2z3b_A ATP-dependent protease 99.9 7E-24 2.4E-28 157.6 11.8 121 1-138 55-179 (180)
48 1g3k_A ATP-dependent protease 99.9 7.9E-24 2.7E-28 156.5 11.8 121 1-139 49-173 (174)
49 2hc5_A ORF 99, hypothetical pr 83.1 3.3 0.00011 27.8 5.8 33 130-162 66-99 (117)
50 1yo5_C SAM pointed domain cont 67.0 8.4 0.00029 25.0 4.1 25 135-159 31-55 (97)
51 2dao_A Transcription factor ET 58.0 14 0.00048 24.8 4.0 26 134-159 27-52 (118)
52 3jtg_A ETS-related transcripti 54.9 18 0.0006 23.7 4.1 25 135-159 25-49 (103)
53 1wwx_A E74-like factor 5 ESE-2 52.7 13 0.00044 24.5 3.1 25 135-159 29-53 (107)
54 4eo3_A Bacterioferritin comigr 49.0 7.5 0.00025 30.4 1.8 46 67-114 103-149 (322)
55 1vd2_A Protein kinase C, IOTA 47.0 51 0.0018 20.7 5.3 53 104-161 23-75 (89)
56 1yx3_A Hypothetical protein DS 40.8 70 0.0024 21.8 5.5 36 1-40 62-97 (132)
57 1sau_A Sulfite reductase, desu 39.8 63 0.0022 21.4 5.0 36 1-40 46-81 (115)
58 3a1q_C Ubiquitin interaction m 38.4 24 0.00083 18.9 2.2 15 105-119 2-16 (45)
59 2lrg_A Uncharacterized protein 38.0 33 0.0011 22.5 3.3 36 45-83 16-52 (126)
60 3or1_C Sulfite reductase GAMA; 34.3 76 0.0026 20.6 4.7 33 1-37 42-74 (105)
61 3kol_A Oxidoreductase, glyoxal 33.9 52 0.0018 21.2 4.1 21 65-85 132-152 (156)
62 1pue_E Protein (transcription 33.2 66 0.0023 20.3 4.1 25 135-159 21-47 (89)
63 1ixs_A Holliday junction DNA h 32.6 22 0.00077 20.7 1.7 36 84-119 25-60 (62)
64 2i7n_A Pantothenate kinase 1; 31.8 1.2E+02 0.0041 24.2 6.4 58 56-120 177-234 (360)
65 2kxe_A DNA polymerase II small 30.8 68 0.0023 19.2 3.6 27 91-118 20-46 (75)
66 3fpw_A HBPS, extracellular HAE 27.8 1.1E+02 0.0036 22.2 5.0 37 104-143 62-98 (192)
67 4fqn_A Malcavernin; helical do 27.7 1.2E+02 0.0042 19.4 5.8 30 18-52 41-75 (98)
68 3lvl_A NIFU-like protein; prot 24.8 1.5E+02 0.0052 19.6 5.1 58 61-121 34-95 (129)
69 3umo_A 6-phosphofructokinase i 24.4 1.5E+02 0.005 22.1 5.6 60 83-161 249-308 (309)
70 1hbx_G ETS-domain protein ELK- 24.1 76 0.0026 22.2 3.4 24 135-159 25-48 (157)
71 3gl3_A Putative thiol:disulfid 23.9 1.1E+02 0.0039 19.5 4.4 37 65-101 105-141 (152)
72 2a2l_A Unknown; structural gen 23.3 74 0.0025 21.7 3.3 36 105-143 10-45 (145)
73 2lf8_A Transcription factor ET 28.9 17 0.00059 24.7 0.0 25 134-158 23-47 (128)
74 1bc8_C SAP-1, protein (SAP-1 E 22.1 34 0.0012 21.9 1.2 24 135-159 24-47 (93)
75 2ztd_A Holliday junction ATP-d 22.0 82 0.0028 23.1 3.5 38 84-121 172-209 (212)
76 2gdt_A Leader protein; P65 hom 21.9 69 0.0024 20.9 2.7 20 106-125 21-40 (116)
77 4g6x_A Glyoxalase/bleomycin re 21.7 1E+02 0.0035 20.2 3.8 21 61-81 128-148 (155)
78 3cqd_A 6-phosphofructokinase i 21.6 1.8E+02 0.0063 21.5 5.7 59 84-161 250-308 (309)
79 2wuj_A Septum site-determining 21.0 40 0.0014 19.3 1.3 18 145-162 17-34 (57)
80 1fli_A FLI-1; transcription/DN 20.8 41 0.0014 21.7 1.4 24 135-159 25-48 (98)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5.5e-41 Score=260.76 Aligned_cols=162 Identities=48% Similarity=0.777 Sum_probs=152.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+.+|++.|++++|.+++.|+++++++|+|+.++++|++++|.|++++++|||+|++||||||+++||+||++||+|++.+
T Consensus 77 ~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~ 156 (243)
T 1ryp_A 77 PIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVG 156 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEE
Confidence 46899999999999999999999999999999999999999999998999999999999999767999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDP-----AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDE 155 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~-----~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~ 155 (164)
++++|+|+|++.++++||++|++.+ +||++||++++++||..++++|.+..+++|++|++++ |++++++||++
T Consensus 157 ~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g--~~~l~~~ei~~ 234 (243)
T 1ryp_A 157 YKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK--FFTLSAENIEE 234 (243)
T ss_dssp BSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE--EEECCHHHHHH
T ss_pred EEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC--eEECCHHHHHH
Confidence 9999999999999999999995311 8999999999999999999999554599999999985 99999999999
Q ss_pred HHHHhhccC
Q 031203 156 HLTAISERD 164 (164)
Q Consensus 156 ~l~~~~~~~ 164 (164)
++.+++++|
T Consensus 235 ~~~~~~~~~ 243 (243)
T 1ryp_A 235 RLVAIAEQD 243 (243)
T ss_dssp HHHHHTTTC
T ss_pred HHHHhhccC
Confidence 999999886
No 2
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=3.3e-40 Score=256.79 Aligned_cols=164 Identities=61% Similarity=0.978 Sum_probs=152.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|+++++++++|+.+++++++++|.|+++++.|||+|++||||||+++||+||.+||+|++.+
T Consensus 83 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 162 (246)
T 1iru_A 83 MTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCG 162 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEE
Confidence 46899999999999999999999999999999999999999999998999999999999999767899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
++++|+|+|++.++++||++|+++++||++||++++++||..+.++|.+..+++|++|++++..|++++++||++++.++
T Consensus 163 ~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~ 242 (246)
T 1iru_A 163 FKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242 (246)
T ss_dssp BSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred eeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHHHh
Confidence 99999999999999999999953339999999999999999999999444499999999987669999999999999999
Q ss_pred hccC
Q 031203 161 SERD 164 (164)
Q Consensus 161 ~~~~ 164 (164)
+++|
T Consensus 243 ~~~~ 246 (246)
T 1iru_A 243 AERD 246 (246)
T ss_dssp HTC-
T ss_pred hccC
Confidence 8876
No 3
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.8e-39 Score=252.31 Aligned_cols=161 Identities=27% Similarity=0.474 Sum_probs=152.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|++.++++++|+.+++++++++|.|+++++.|||+|++||||||+.+||+||.+||+|++.+
T Consensus 79 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 158 (261)
T 1iru_C 79 ITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGG 158 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999657899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC--cEEEcCHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP--EFRVLSIEEIDEH 156 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~-~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~--~~k~l~~~ei~~~ 156 (164)
++++|+|+|++.++++|+++| ++ +||++||++++++||..+.++|..++ +++|++|+++++ .|++++++||+++
T Consensus 159 ~~~~aiGsgs~~a~~~Le~~~--~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~ 236 (261)
T 1iru_C 159 WKATCIGNNSAAAVSMLKQDY--KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 236 (261)
T ss_dssp CSEEEESTTTTHHHHHHHHHC--CTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHH
T ss_pred eeeEEeCcccHHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHH
Confidence 999999999999999999999 57 89999999999999999999987766 899999999875 3899999999999
Q ss_pred HHHhhcc
Q 031203 157 LTAISER 163 (164)
Q Consensus 157 l~~~~~~ 163 (164)
+.++.++
T Consensus 237 l~~~~~~ 243 (261)
T 1iru_C 237 IKKHEEE 243 (261)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9999754
No 4
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.1e-38 Score=247.89 Aligned_cols=160 Identities=26% Similarity=0.480 Sum_probs=150.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|++.++++++|+.+++++++++|.|++++++|||+|++||||||+++||+||.+||+|++.+
T Consensus 79 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 158 (244)
T 1ryp_C 79 LTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTG 158 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999448999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhc-cCCCCeEEEEEEE--cCCCc--EEEcCHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVVS--KENPE--FRVLSIEEIDE 155 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~-d~~~~~iei~ii~--~~~~~--~k~l~~~ei~~ 155 (164)
++++|+|+|++.++++||++| +++||+|||++++++||..+.++ +.+..+++|++|+ ++++. |++++++||++
T Consensus 159 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~ 236 (244)
T 1ryp_C 159 WKAISVGANTSAAQTLLQMDY--KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKD 236 (244)
T ss_dssp BSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHH
T ss_pred eeEEEECCCcHHHHHHHHHhh--hcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHH
Confidence 999999999999999999998 58999999999999999999998 5553499999999 88765 99999999999
Q ss_pred HHHHhhc
Q 031203 156 HLTAISE 162 (164)
Q Consensus 156 ~l~~~~~ 162 (164)
++.+++.
T Consensus 237 ~~~~~~~ 243 (244)
T 1ryp_C 237 ILVKTGI 243 (244)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 9998863
No 5
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=9.2e-39 Score=246.78 Aligned_cols=156 Identities=33% Similarity=0.554 Sum_probs=147.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++++|.|++++++|||+|++||||||+ +||+||.+||+|++.+
T Consensus 78 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~ 156 (233)
T 1iru_B 78 MGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFA 156 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEE
Confidence 468999999999999999999999999999999999999999999989999999999999996 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
++++|+|+|++.++++||++| +++||+|||++++++||..+.++|.+..+++|++|++++ |++++++||++++.++
T Consensus 157 ~~~~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g--~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 157 WKATAMGKNYVNGKTFLEKRY--NEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAI 232 (233)
T ss_dssp BSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE--EEECCHHHHHHHHTTC
T ss_pred eeEEEECCCCHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC--EEECCHHHHHHHHHhc
Confidence 999999999999999999998 578999999999999999999999655599999999985 9999999999999876
Q ss_pred h
Q 031203 161 S 161 (164)
Q Consensus 161 ~ 161 (164)
+
T Consensus 233 ~ 233 (233)
T 1iru_B 233 A 233 (233)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=6.9e-39 Score=248.76 Aligned_cols=160 Identities=24% Similarity=0.455 Sum_probs=150.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccC------ccccceeeEEEEEcCCCCCeEEEeCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDP 74 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~------~rP~gv~~iiaG~d~~~gp~Ly~~dp 74 (164)
+++|++.|+++++.+++.|++.++++++|+.+++++++++|.||++++ .|||+|++||||||+++||+||.+||
T Consensus 73 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp 152 (242)
T 1ryp_E 73 LTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEP 152 (242)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECC
Confidence 479999999999999999999999999999999999999999999988 99999999999999558999999999
Q ss_pred CcceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHH
Q 031203 75 AGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEID 154 (164)
Q Consensus 75 ~G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~ 154 (164)
+|++.+++++|+|+|++.++++||++| +++||++||++++++||..+.+++.+..+++|++|+++++ |++++++||+
T Consensus 153 ~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~~~~ei~ 229 (242)
T 1ryp_E 153 SGTFYRYNAKAIGSGSEGAQAELLNEW--HSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDG-FKIYDNEKTA 229 (242)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTE-EEECCHHHHH
T ss_pred CCCEeccCEEEECCCCHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-eEECCHHHHH
Confidence 999999999999999999999999998 5889999999999999999999855444999999999876 9999999999
Q ss_pred HHHHHhhcc
Q 031203 155 EHLTAISER 163 (164)
Q Consensus 155 ~~l~~~~~~ 163 (164)
+++.++.++
T Consensus 230 ~~~~~~~~~ 238 (242)
T 1ryp_E 230 ELIKELKEK 238 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999998754
No 7
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2e-38 Score=246.05 Aligned_cols=160 Identities=31% Similarity=0.531 Sum_probs=148.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCC-CCCeEEEeCCCccee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAGHFF 79 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~-~gp~Ly~~dp~G~~~ 79 (164)
+++|++.|+++++.+++.|++.++++++|+.+++++++++|.|||++++|||+|++||||||++ +||+||.+||+|++.
T Consensus 76 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~ 155 (241)
T 1ryp_D 76 LNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYS 155 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEE
Confidence 4689999999999999999999999999999999999999999999899999999999999975 789999999999999
Q ss_pred eeeEEeecCChHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 80 GHKATSAGLKEQEAINFLEKKMKN-DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 80 ~~~~~aiG~~s~~~~~~Le~~~~~-~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
+++++|+|+|++.++++||++|+. +++||++||++++++||..+.+ .+..+++|++|++++ .|++++++||++++.
T Consensus 156 ~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~-~~~~l~~~ei~~~~~ 232 (241)
T 1ryp_D 156 SWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDS-DIVALSSEEINQYVT 232 (241)
T ss_dssp EBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTT-EEEECCHHHHHHHHH
T ss_pred EeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCC-cEEECCHHHHHHHHH
Confidence 999999999999999999999843 5789999999999999999985 444499999999987 499999999999999
Q ss_pred Hhhcc
Q 031203 159 AISER 163 (164)
Q Consensus 159 ~~~~~ 163 (164)
++.++
T Consensus 233 ~~~~~ 237 (241)
T 1ryp_D 233 QIEQE 237 (241)
T ss_dssp HHTHH
T ss_pred HHhhh
Confidence 98743
No 8
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.3e-39 Score=254.53 Aligned_cols=158 Identities=34% Similarity=0.602 Sum_probs=149.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|++.++++++|+.++++|++++|.||+++++|||+|++||||||+ +||+||++||+|++.+
T Consensus 85 ~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~ 163 (264)
T 3h4p_A 85 LVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIE 163 (264)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEE
T ss_pred chHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEe
Confidence 479999999999999999999999999999999999999999999999999999999999997 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 160 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~ 160 (164)
++++|+|+|++.++++|++.| +++||++||++++++||..++++ ....+++|++|++++.+|++++++||++++.++
T Consensus 164 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~ 240 (264)
T 3h4p_A 164 YKATAIGSGRPVVMELLEKEY--RDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKV 240 (264)
T ss_dssp ESEEEESTTHHHHTTTHHHHC--CTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTT
T ss_pred cCeEEECCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHH
Confidence 999999999999999999998 68999999999999999999987 555599999999887779999999999999988
Q ss_pred hc
Q 031203 161 SE 162 (164)
Q Consensus 161 ~~ 162 (164)
.+
T Consensus 241 ~~ 242 (264)
T 3h4p_A 241 KK 242 (264)
T ss_dssp TT
T ss_pred HH
Confidence 74
No 9
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-38 Score=243.23 Aligned_cols=155 Identities=23% Similarity=0.347 Sum_probs=145.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++++|.| +.|||+|++||||||+.+||+||.+||+|++.+
T Consensus 49 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 124 (219)
T 3h4p_a 49 SVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNE 124 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEe
Confidence 4689999999999999999999999999999999999999776 368999999999999867899999999999999
Q ss_pred ee-EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~-~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
++ ++|+|+|++.++++||++| +++||++||++++++||..++++|..++ +++|++|++++ |++++++||+++|.
T Consensus 125 ~~~~~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g--~~~l~~~ei~~~l~ 200 (219)
T 3h4p_a 125 EKTFTATGSGSPIAYGVLEAGY--DRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDG--VKIFEDEEIEKILD 200 (219)
T ss_dssp CSSEEEESTTHHHHHHHHHTSC--CTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE--EEECCHHHHHHHHH
T ss_pred cCCEEEEcCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC--eEEcCHHHHHHHHH
Confidence 99 9999999999999999998 5899999999999999999999998876 89999999973 99999999999999
Q ss_pred Hhhcc
Q 031203 159 AISER 163 (164)
Q Consensus 159 ~~~~~ 163 (164)
+++++
T Consensus 201 ~~~~~ 205 (219)
T 3h4p_a 201 SMKAK 205 (219)
T ss_dssp HCC--
T ss_pred Hhhcc
Confidence 99853
No 10
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.2e-38 Score=250.28 Aligned_cols=159 Identities=28% Similarity=0.494 Sum_probs=149.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|++.++++++|+.+++++++++|.|||+++.|||+|++||||||+ +||+||.+||+|++.+
T Consensus 77 ~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~ 155 (263)
T 1iru_F 77 LTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFD 155 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEE
Confidence 468999999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcc-CCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d-~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
++++|+|+|++.++++||++|++.++||++||++++++||..++++| ..++ +++|++|+++++ |++++++||++++.
T Consensus 156 ~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~-~~~l~~~ei~~~~~ 234 (263)
T 1iru_F 156 CRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE-FTIYDDDDVSPFLE 234 (263)
T ss_dssp ESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE-EEEECSGGGHHHHT
T ss_pred eeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCC-eEECCHHHHHHHHH
Confidence 99999999999999999999953348999999999999999999998 3444 999999999864 99999999999999
Q ss_pred Hhh
Q 031203 159 AIS 161 (164)
Q Consensus 159 ~~~ 161 (164)
++.
T Consensus 235 ~~~ 237 (263)
T 1iru_F 235 GLE 237 (263)
T ss_dssp TCC
T ss_pred HHh
Confidence 876
No 11
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=3.4e-38 Score=243.60 Aligned_cols=153 Identities=36% Similarity=0.561 Sum_probs=145.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++++|.|+++++.|||+|++||||||+ +||+||.+||+|++.+
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~ 159 (233)
T 1yar_A 81 LVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINE 159 (233)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEe
Confidence 368999999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 157 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l 157 (164)
++++|+|+|++.++++||++| +++||++||++++++||..+.++|++..+++|++|+++++ |++++++||+++|
T Consensus 160 ~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 160 YKATAIGSGKDAVVSFLEREY--KENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp BSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSC-CEECCHHHHHTTC
T ss_pred eeEEEEcCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 999999999999999999998 5789999999999999999999998544999999999875 9999999998764
No 12
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.2e-38 Score=245.97 Aligned_cols=158 Identities=30% Similarity=0.510 Sum_probs=148.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++++|.|||+++.|||+|++||||||+++||+||.+||+|++.+
T Consensus 76 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 155 (248)
T 1iru_D 76 LTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHA 155 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEE
Confidence 46899999999999999999999999999999999999999999998999999999999999558999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~l--s~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
++++|+|+|++.++++||++| +++| |++||++++++||..+.+ .+..+++|++|+++++ |++++++||++++.
T Consensus 156 ~~~~aiG~gs~~a~~~Le~~~--~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~-~~~l~~~ei~~~~~ 230 (248)
T 1iru_D 156 WKANAIGRGAKSVREFLEKNY--TDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQS-LKILNPEEIEKYVA 230 (248)
T ss_dssp BSEEEESTTHHHHHHHHTTTC--CSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSC-EECCCHHHHHHHTT
T ss_pred eeEEEECCCcHHHHHHHHHhh--cccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHH
Confidence 999999999999999999998 5789 999999999999999986 3444899999999875 99999999999999
Q ss_pred Hhhcc
Q 031203 159 AISER 163 (164)
Q Consensus 159 ~~~~~ 163 (164)
++.++
T Consensus 231 ~~~~~ 235 (248)
T 1iru_D 231 EIEKE 235 (248)
T ss_dssp TTTTT
T ss_pred HHHhc
Confidence 88754
No 13
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.5e-37 Score=241.92 Aligned_cols=156 Identities=31% Similarity=0.497 Sum_probs=146.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|++.++++++|+.+++++++++|.|+++++.|||+|++|||||| +||+||.+||+|++.+
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~ 158 (246)
T 1j2p_A 81 LVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLE 158 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999 6899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEE-cCCCcEEEcCHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVS-KENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~-~~~~~~k~l~~~ei~~~l~ 158 (164)
++++|+|+|++.++++||+.| +++||++||++++++||..+.++ ..++ +++|++|+ +++ +|++++++||++++.
T Consensus 159 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~~l~~~ei~~~~~ 234 (246)
T 1j2p_A 159 YKATAIGMGRMAVTEFFEKEY--RDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDR-TFKEVSPEELKPYVE 234 (246)
T ss_dssp BSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTC-CCEECCHHHHHHHHH
T ss_pred eeEEEECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCC-ceEECCHHHHHHHHH
Confidence 999999999999999999998 57899999999999999999988 5555 99999999 654 499999999999999
Q ss_pred Hhhc
Q 031203 159 AISE 162 (164)
Q Consensus 159 ~~~~ 162 (164)
++.+
T Consensus 235 ~~~~ 238 (246)
T 1j2p_A 235 RANE 238 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 14
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=6.1e-38 Score=245.13 Aligned_cols=159 Identities=27% Similarity=0.359 Sum_probs=148.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++++|.|++++++|||+|++||||||+++||+||.+||+|++.+
T Consensus 80 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 159 (254)
T 1iru_G 80 LLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYG 159 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999558999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC-cEEEcCHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP-EFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~-~~k~l~~~ei~~~l~ 158 (164)
++++|+|+|++.++++||+.| .++||++||++++++||..+.+++..++ +++|++|+++.+ .|+++++++|++++.
T Consensus 160 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~ 237 (254)
T 1iru_G 160 YWGCAIGKARQAAKTEIEKLQ--MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEK 237 (254)
T ss_dssp BSEEEESTTHHHHHHHHTTSC--GGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHH
T ss_pred eeeEEecCccHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHH
Confidence 999999999999999999998 5789999999999999999988776555 899999998733 499999999999998
Q ss_pred Hhh
Q 031203 159 AIS 161 (164)
Q Consensus 159 ~~~ 161 (164)
.+.
T Consensus 238 ~~~ 240 (254)
T 1iru_G 238 YAK 240 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 15
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1e-37 Score=242.96 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=139.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHH-HHHHhhhhccCccccceeeEEEEEcC---CCCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYG-YEMPVDVLAKWIA-DKSQVYTQHAYMRPLGVVAMVLSIDE---ECGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~l~~~ls-~~~q~yt~~~~~rP~gv~~iiaG~d~---~~gp~Ly~~dp~ 75 (164)
+++|++.|.+.++..++.|++.++ ++++++.|+++++ .+.|.||| ++|||||++||||||+ .+||+||++||+
T Consensus 67 ~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~ 144 (248)
T 3mi0_A 67 KFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYD 144 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCC
Confidence 468999999999999999999999 9999999999999 78899997 7899999999999997 479999999999
Q ss_pred cceee-eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhh-------hccCCCCeEEEEEEEcCC--CcE
Q 031203 76 GHFFG-HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL-------QEDFKASEIEVGVVSKEN--PEF 145 (164)
Q Consensus 76 G~~~~-~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~-------~~d~~~~~iei~ii~~~~--~~~ 145 (164)
|++.. ++++|+|+|++.++++||++| +++||++||++++++||..++ ++++...+++|++|++++ +.|
T Consensus 145 G~~~~e~~~~a~Gsgs~~a~~~Le~~y--~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f 222 (248)
T 3mi0_A 145 GSIADEPHFVVMGGTTEPIANALKESY--AENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAF 222 (248)
T ss_dssp SCEEEESSEEEESSCHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCE
T ss_pred eEEeecccEEEECccHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccE
Confidence 99995 999999999999999999998 688999999999999999999 567777899999999985 469
Q ss_pred EEcCHHHHHHHHHHhh
Q 031203 146 RVLSIEEIDEHLTAIS 161 (164)
Q Consensus 146 k~l~~~ei~~~l~~~~ 161 (164)
++++++||+++|.+++
T Consensus 223 ~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 223 RRITGSALQALLVDQE 238 (248)
T ss_dssp EECCHHHHHHTC----
T ss_pred EECCHHHHHHHHHHcC
Confidence 9999999999998775
No 16
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.9e-38 Score=245.04 Aligned_cols=154 Identities=22% Similarity=0.382 Sum_probs=143.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|+++++++++|+.+++++++++|.|||+++.|||+|++||||||+ .||+||.+||+|++.+
T Consensus 76 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~ 154 (233)
T 1ryp_F 76 LAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTE 154 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeee
Confidence 468999999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhhhcc-CCCC-eEEEEEEEcCCCcEEEcCHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQED-FKAS-EIEVGVVSKENPEFRVLSIEEIDEH 156 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~l--s~eea~~l~~~al~~~~~~d-~~~~-~iei~ii~~~~~~~k~l~~~ei~~~ 156 (164)
++++|+|+|++.++++||++|++.++| |+|||++++++||..++ +| ..++ +++|++|+++++ |++++++||+++
T Consensus 155 ~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~-~~~l~~~ei~~~ 232 (233)
T 1ryp_F 155 LYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP-FTIYDGEAVAKY 232 (233)
T ss_dssp ESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE-EEEEEGGGGGGG
T ss_pred eeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC-EEECCHHHHHhh
Confidence 999999999999999999999532389 99999999999999999 66 4444 999999999865 999999999876
Q ss_pred H
Q 031203 157 L 157 (164)
Q Consensus 157 l 157 (164)
|
T Consensus 233 l 233 (233)
T 1ryp_F 233 I 233 (233)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.5e-37 Score=233.14 Aligned_cols=152 Identities=22% Similarity=0.338 Sum_probs=142.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++++.+++++++.+|.+ +.|||+|++||||||+ +||+||.+||+|++.+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~ 122 (202)
T 1j2q_H 48 SVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIE 122 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeee
Confidence 4689999999999999999999999999999999999999664 3789999999999998 7899999999999999
Q ss_pred ee-EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~-~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
++ ++|+|+|++.++++||++| +++||++||++++++||..+.++|..++ +++|++|++++ |++++++||++++.
T Consensus 123 ~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~ 198 (202)
T 1j2q_H 123 EKDIVATGSGSLTAYGVLEDRF--TPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDE--FYQYSPEEVEQILA 198 (202)
T ss_dssp ESSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSC--EEECHHHHHHHHGG
T ss_pred cCCEEEEcCCHHHHHHHHHhhc--CCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC--eEEeCHHHHHHHHH
Confidence 99 9999999999999999998 5889999999999999999999998765 89999999983 99999999999998
Q ss_pred Hhh
Q 031203 159 AIS 161 (164)
Q Consensus 159 ~~~ 161 (164)
+++
T Consensus 199 ~~~ 201 (202)
T 1j2q_H 199 KFR 201 (202)
T ss_dssp GTT
T ss_pred Hhh
Confidence 873
No 18
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.4e-37 Score=241.37 Aligned_cols=156 Identities=28% Similarity=0.523 Sum_probs=146.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccC-----ccccceeeEEEEEcCCCCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~-----~rP~gv~~iiaG~d~~~gp~Ly~~dp~ 75 (164)
++||++.|+++++.+++.|+++++++++|+.+++++++++|.|+++++ .|||+|++||||||. +||+||.+||+
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~ 159 (241)
T 1iru_E 81 LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPS 159 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCC
Confidence 468999999999999999999999999999999999999999999887 899999999999995 89999999999
Q ss_pred cceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHH
Q 031203 76 GHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDE 155 (164)
Q Consensus 76 G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~ 155 (164)
|++.+++++|+|+|++.++++||+.| +++||+|||++++++||..+.++..+..+++|++|+++++ |++++++||++
T Consensus 160 G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~l~~~ei~~ 236 (241)
T 1iru_E 160 GTFVQCDARAIGSASEGAQSSLQELY--HKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN-FHMFTKEELEE 236 (241)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC-CEECCHHHHHH
T ss_pred CcEEecceEEECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC-eEECCHHHHHH
Confidence 99999999999999999999999998 5889999999999999999998844444999999999987 99999999999
Q ss_pred HHHHh
Q 031203 156 HLTAI 160 (164)
Q Consensus 156 ~l~~~ 160 (164)
++.++
T Consensus 237 ~~~~~ 241 (241)
T 1iru_E 237 VIKDI 241 (241)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 99754
No 19
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=4.7e-37 Score=239.56 Aligned_cols=158 Identities=33% Similarity=0.542 Sum_probs=147.4
Q ss_pred CCchHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCccee
Q 031203 1 MTADARTLVQQARYEAAE-FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFF 79 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~-~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~ 79 (164)
+++|++.|+++++.+++. |+..++.+++++.+++.+++++|.|++++++|||+|++||||||+++||+||.+||+|++.
T Consensus 78 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 157 (250)
T 1ryp_B 78 MGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYF 157 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEE
Confidence 468999999999999999 9999999999999999999999999999899999999999999976789999999999999
Q ss_pred eeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCC--------------CcE
Q 031203 80 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKEN--------------PEF 145 (164)
Q Consensus 80 ~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~--------------~~~ 145 (164)
+++++|+|+|++.++++||++| +++||+|||++++++||..+++++.+..+++|++|++++ +.|
T Consensus 158 ~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~ 235 (250)
T 1ryp_B 158 PWKATAIGKGSVAAKTFLEKRW--NDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRF 235 (250)
T ss_dssp EBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSE
T ss_pred eeceeEecCccHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCe
Confidence 9999999999999999999998 589999999999999999999887754599999999862 359
Q ss_pred EEcCHHHHHHHHHHh
Q 031203 146 RVLSIEEIDEHLTAI 160 (164)
Q Consensus 146 k~l~~~ei~~~l~~~ 160 (164)
++++++||++++.++
T Consensus 236 ~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 236 RKLTSQEINDRLEAL 250 (250)
T ss_dssp EECCHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHhC
Confidence 999999999998753
No 20
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.6e-36 Score=232.02 Aligned_cols=152 Identities=22% Similarity=0.357 Sum_probs=142.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++.+|.+ +.|||+|++|||||| +||+||.+||+|++.+
T Consensus 56 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~ 129 (217)
T 1yar_H 56 LVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVE 129 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEe
Confidence 4689999999999999999999999999999999999999654 378999999999999 6899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
++++|+|+|++.++++||+.| +++||+|||++++++||..+.++|..++ +++|++|+++++ |++++++||++++.+
T Consensus 130 ~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g-~~~~~~~ei~~~~~~ 206 (217)
T 1yar_H 130 DIYASTGSGSPFVYGVLESQY--SEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG-YVQLPTDQIESRIRK 206 (217)
T ss_dssp ESEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-EEECCHHHHHHHHHH
T ss_pred cCEEEEcCCHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-EEEcCHHHHHHHHHH
Confidence 999999999999999999998 5899999999999999999999998765 899999999443 999999999999988
Q ss_pred hh
Q 031203 160 IS 161 (164)
Q Consensus 160 ~~ 161 (164)
+.
T Consensus 207 ~~ 208 (217)
T 1yar_H 207 LG 208 (217)
T ss_dssp HT
T ss_pred HH
Confidence 75
No 21
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-36 Score=235.43 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=146.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCC-----CeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~g-----p~Ly~~dp~ 75 (164)
+++|++.|+++++.+++.|++.++++++++.+++.|++++|.|+++. +|||+|++||||||+++| |+||.+||+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~ 126 (235)
T 1q5q_H 48 TAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVV 126 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTT
T ss_pred cHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCC
Confidence 46899999999999999999999999999999999999999998765 899999999999998557 999999999
Q ss_pred cceeee--eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCe---E-----EEEEEEcCCCcE
Q 031203 76 GHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEF 145 (164)
Q Consensus 76 G~~~~~--~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~---i-----ei~ii~~~~~~~ 145 (164)
|++.++ +++|+|+|++.++++||+.| +++||++||++++++||..+.++|..+++ + +|++|++++ |
T Consensus 127 G~~~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g--~ 202 (235)
T 1q5q_H 127 GGRYEERAGYHAVGSGSLFAKSALKKIY--SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--A 202 (235)
T ss_dssp SCEEECCSSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--E
T ss_pred CceEEeCCCeEEECCCHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC--e
Confidence 999999 99999999999999999998 58999999999999999999999988764 2 999999874 9
Q ss_pred EEcCHHHHHHHHHHhhc
Q 031203 146 RVLSIEEIDEHLTAISE 162 (164)
Q Consensus 146 k~l~~~ei~~~l~~~~~ 162 (164)
++++++||++++.++.+
T Consensus 203 ~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 203 VHVSEETTSELARRIVA 219 (235)
T ss_dssp EECCHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHH
Confidence 99999999999998874
No 22
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.8e-36 Score=240.39 Aligned_cols=155 Identities=25% Similarity=0.395 Sum_probs=141.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|++++|.+++.|+++++++|+++.++++|++++|.||+++++|||+|++||||||+ +||+||++||+|++.+
T Consensus 81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~ 159 (288)
T 3nzj_F 81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWG 159 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEE
Confidence 468999999999999999999999999999999999999999999999999999999999998 7899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEc--CCCcEEEcCHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK--ENPEFRVLSIEEIDEH 156 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~-~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~--~~~~~k~l~~~ei~~~ 156 (164)
++++|+|+|++.++++||++++ ++++||++||++++++||..+++++..++ .+||+||++ +++.++.++.+++++.
T Consensus 160 ~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 160 YKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp BSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred cCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence 9999999999999999999922 27899999999999999999999887666 899999999 3445667777766654
No 23
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=8.1e-37 Score=232.77 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=144.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++++|.|+++ ||+|++||||||+++||+||.+||+|++.+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 123 (212)
T 1ryp_L 48 GAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLK 123 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEe
Confidence 4689999999999999999999999999999999999999998763 999999999999657999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
++++|+|+|++.++++||++| +++||++||++++++||..+.++|..++ +++|++|++++ +++++++||++++.+
T Consensus 124 ~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~~~~~ei~~~~~~ 199 (212)
T 1ryp_L 124 GDIFCVGSGQTFAYGVLDSNY--KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWK 199 (212)
T ss_dssp CSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHH
T ss_pred cCCEEEcCCHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCc--eEEECHHHHHHHHHH
Confidence 999999999999999999998 5889999999999999999999997766 99999999874 999999999999988
Q ss_pred hhc
Q 031203 160 ISE 162 (164)
Q Consensus 160 ~~~ 162 (164)
+.+
T Consensus 200 ~~~ 202 (212)
T 1ryp_L 200 VKE 202 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 24
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=4.5e-36 Score=233.31 Aligned_cols=157 Identities=24% Similarity=0.376 Sum_probs=143.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++++.+++++++++|.||+++++|||+|++||||||+ +||+||.+||+|++.+
T Consensus 77 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~ 155 (244)
T 1ryp_G 77 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWG 155 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEE
Confidence 468999999999999999999999999999999999999999999988999999999999997 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEc-CCCcEEEcCHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKK---MKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK-ENPEFRVLSIEEIDE 155 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~---~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~-~~~~~k~l~~~ei~~ 155 (164)
++++|+|+|++.++++||+. | +++||++||++++++||..+.++|..++ +++|++|++ +..+++.+.|+++.+
T Consensus 156 ~~~~aiG~gs~~a~~~Le~~~~~~--~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~ 233 (244)
T 1ryp_G 156 YKGAATGKGRQSAKAELEKLVDHH--PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQ 233 (244)
T ss_dssp BSEEEESTTHHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHH
T ss_pred eeEEEECCChHHHHHHHHHhHhhc--CCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHH
Confidence 99999999999999999997 7 5789999999999999999999998776 899999997 222367777777766
Q ss_pred HHHHh
Q 031203 156 HLTAI 160 (164)
Q Consensus 156 ~l~~~ 160 (164)
...+.
T Consensus 234 ~~~~~ 238 (244)
T 1ryp_G 234 EAIDF 238 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 25
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=4.2e-37 Score=233.19 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=142.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++.+|.|++ ||++++||||||+++||+||.+||+|++.+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~ 122 (205)
T 1iru_H 48 SAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVR 122 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEe
Confidence 468999999999999999999999999999999999999988864 999999999999867899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
++++++|+|++.++++||++| +++||++||++++++||..+.++|..++ +++|++|++++..+++++++||++++.+
T Consensus 123 ~~~~a~Gsgs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 123 QSFAIGGSGSSYIYGYVDATY--REGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp CSEEEESGGGGGGHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred cCEEEECCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 999999999999999999998 5789999999999999999999997766 9999999998766899999999887654
No 26
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3.1e-36 Score=228.23 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=143.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|++.++++++++.+++++++.+|.|++ +||+|++||||||+ +||+||.+||+|++.+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~----~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~ 122 (204)
T 1iru_L 48 GAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDK-RGPGLYYVDSEGNRIS 122 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTT----SCCCBEEEEEEECS-SSEEEEEEESSSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCC----CCeeEEEEEEEEeC-CCCEEEEECCCCcEEE
Confidence 468999999999999999999999999999999999999988753 49999999999998 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
++++|+|+|++.++++||++| +++||++||++++++||..+.++|..++ +++|++|++++ |++++++||++++.+
T Consensus 123 ~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~ 198 (204)
T 1iru_L 123 GATFSVGSGSVYAYGVMDRGY--SYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDG--WIRVSSDNVADLHEK 198 (204)
T ss_dssp CSEEEESTTHHHHHHHHHTTC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSC--EEEEEEEEHHHHHHH
T ss_pred eCCEEEEcCHHHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCc--eEEeCHHHHHHHHHH
Confidence 999999999999999999998 5789999999999999999999997655 99999999874 999999999999998
Q ss_pred hhc
Q 031203 160 ISE 162 (164)
Q Consensus 160 ~~~ 162 (164)
+..
T Consensus 199 ~~~ 201 (204)
T 1iru_L 199 YSG 201 (204)
T ss_dssp HTC
T ss_pred hcc
Confidence 863
No 27
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=4.8e-36 Score=235.02 Aligned_cols=159 Identities=14% Similarity=0.221 Sum_probs=140.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH-HHHhhhhccCccccceeeEEEEEc--C-CCCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYG-YEMPVDVLAKWIAD-KSQVYTQHAYMRPLGVVAMVLSID--E-ECGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~l~~~ls~-~~q~yt~~~~~rP~gv~~iiaG~d--~-~~gp~Ly~~dp~ 75 (164)
+++|++.|+++++.+++.|++.++ ++++++.+++++++ +.|.|+ ++.|||+|++|||||| + .+||+||++||+
T Consensus 67 ~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~ 144 (259)
T 1q5q_A 67 KYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYD 144 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCC
Confidence 468999999999999999999998 49999999999999 788898 3689999999999999 2 489999999999
Q ss_pred ccee-eeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhh-----hccCCCCeEEEEEEEcCC--CcEEE
Q 031203 76 GHFF-GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL-----QEDFKASEIEVGVVSKEN--PEFRV 147 (164)
Q Consensus 76 G~~~-~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~-----~~d~~~~~iei~ii~~~~--~~~k~ 147 (164)
|++. .++++|+|++++.++++||++| +++||++||++++++||..++ ++|+...+++|++|++++ .+|++
T Consensus 145 G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~ 222 (259)
T 1q5q_A 145 GSIVDEQHFVVMGGTTEPIATAMRESY--RADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRR 222 (259)
T ss_dssp SCEEEESSEEEESSSHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEE
T ss_pred CceeeCCCEEEECCChHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEE
Confidence 9999 7899999999999999999998 588999999999999999999 888844499999999985 24999
Q ss_pred cCHHHHHHHHHHhhcc
Q 031203 148 LSIEEIDEHLTAISER 163 (164)
Q Consensus 148 l~~~ei~~~l~~~~~~ 163 (164)
++++||++++.++.++
T Consensus 223 l~~~ei~~~~~~~~~~ 238 (259)
T 1q5q_A 223 IAGTALEQLVPAEPAA 238 (259)
T ss_dssp CCHHHHHTTSCCC---
T ss_pred CCHHHHHHHHHHhhhc
Confidence 9999999999887643
No 28
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=6.5e-36 Score=237.15 Aligned_cols=155 Identities=12% Similarity=0.158 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+|+.|+++++++++|+.+++++++++|.|++ +||++++||||||+++||+||.+||+|++.+
T Consensus 123 ~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~ 198 (287)
T 3nzj_K 123 GAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLK 198 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEE
Confidence 468999999999999999999999999999999999999988765 3999999999999658999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
++++|+|+|++.++++||+.| +++||++||++++++||..+.+||..++ +++|++|++++ |++++++||++++.+
T Consensus 199 ~~~~AiGsgs~~a~~~Le~~y--~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg--~~~l~~~ev~~~l~~ 274 (287)
T 3nzj_K 199 GDIFCVGSGQTFAYGVLDSNY--KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWK 274 (287)
T ss_dssp CSEEEESTTHHHHHHHHHTSC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHH
T ss_pred cCeEEEecchHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC--EEEeCHHHHHHHHHH
Confidence 999999999999999999998 5899999999999999999999999887 99999999984 999999999999998
Q ss_pred hhcc
Q 031203 160 ISER 163 (164)
Q Consensus 160 ~~~~ 163 (164)
+.|+
T Consensus 275 ~~e~ 278 (287)
T 3nzj_K 275 VKEE 278 (287)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8853
No 29
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4e-35 Score=233.29 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=146.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCC-----CeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~g-----p~Ly~~dp~ 75 (164)
+++|++.|+++++.+++.|++.++++++++.++++|++++|.|+++. .|||+|++||||||+++| |+||++||+
T Consensus 113 ~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~ 191 (294)
T 1q5r_H 113 TAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVV 191 (294)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSS
T ss_pred cHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCC
Confidence 36899999999999999999999999999999999999999998765 899999999999998546 999999999
Q ss_pred cceeee--eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCe---E-----EEEEEEcCCCcE
Q 031203 76 GHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEF 145 (164)
Q Consensus 76 G~~~~~--~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~---i-----ei~ii~~~~~~~ 145 (164)
|++.++ +++|+|+|++.++++||++| +++||++||++++++||..+.++|+.++. + +|++|++++ |
T Consensus 192 G~~~e~~~~~~AiGsgs~~a~~~Le~~y--~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g--~ 267 (294)
T 1q5r_H 192 GGRYEERAGYHAVGSGSLFAKSALKKIY--SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--A 267 (294)
T ss_dssp SCEEECCSSEEEESTTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--E
T ss_pred CeEEecCCCeEEEecCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC--E
Confidence 999999 89999999999999999998 58999999999999999999999988753 5 999999874 9
Q ss_pred EEcCHHHHHHHHHHhhc
Q 031203 146 RVLSIEEIDEHLTAISE 162 (164)
Q Consensus 146 k~l~~~ei~~~l~~~~~ 162 (164)
++++++||++++.++.+
T Consensus 268 ~~l~~~ei~~~l~~i~~ 284 (294)
T 1q5r_H 268 VHVSEETTSELARRIVA 284 (294)
T ss_dssp EECCHHHHHHHHHHHCC
T ss_pred EEcCHHHHHHHHHHHHH
Confidence 99999999999999874
No 30
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=9.4e-35 Score=219.08 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=133.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcC-CCCCeEEEeCCCccee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFF 79 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~-~~gp~Ly~~dp~G~~~ 79 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++.+|.|++. ++||+|++||||||+ ++||+||.+||+|++.
T Consensus 49 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~ 126 (198)
T 1ryp_K 49 EAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKV 126 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEE
Confidence 4689999999999999999999999999999999999999887642 359999999999996 4799999999999999
Q ss_pred eeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCH
Q 031203 80 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 150 (164)
Q Consensus 80 ~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~ 150 (164)
+++++|+|+|++.++++||+.| +++||+|||++++++||..+.++|..++ +++|++|++++ ++++++
T Consensus 127 ~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~~~~ 194 (198)
T 1ryp_K 127 ELPYGAHGYSGFYTFSLLDHHY--RPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG--IRQVDD 194 (198)
T ss_dssp ECSEEECTTHHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE--EEEECC
T ss_pred ECCEEEEcccHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCC--EEEecc
Confidence 9999999999999999999998 5789999999999999999999997766 99999999974 887765
No 31
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=9.8e-35 Score=230.84 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=136.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCC-----CeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~g-----p~Ly~~dp~ 75 (164)
+++|++.|+++++.+++.|++.++++++++.+++.+++++|.|++ .++|||+|++||||||+.++ |+||++||+
T Consensus 105 ~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~ 183 (291)
T 2jay_A 105 TAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAA 183 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTT
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEECCC
Confidence 468999999999999999999999999999999999999999876 46899999999999998555 899999999
Q ss_pred ccee--eeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeE--------EEEEEEcCCCcE
Q 031203 76 GHFF--GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEI--------EVGVVSKENPEF 145 (164)
Q Consensus 76 G~~~--~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~i--------ei~ii~~~~~~~ 145 (164)
|++. +++++|+|+|++.++++||+.| +++||++||++++++||..++++|+.++++ +|++|++++ |
T Consensus 184 G~~~e~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg--~ 259 (291)
T 2jay_A 184 GGWNIEEEGYQAVGSGSLFAKSSMKKLY--SQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG--A 259 (291)
T ss_dssp SCEEECSSSEEEESTTHHHHHHHHHHHG--GGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE--E
T ss_pred CcEEecCCCEEEEecCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC--e
Confidence 9999 7899999999999999999999 578999999999999999999999988876 599999984 9
Q ss_pred EEcCHHHHHHHHHHhhc
Q 031203 146 RVLSIEEIDEHLTAISE 162 (164)
Q Consensus 146 k~l~~~ei~~~l~~~~~ 162 (164)
++++++||++++.++.+
T Consensus 260 ~~l~~~ei~~~~~~~~~ 276 (291)
T 2jay_A 260 VDVPESRIAELARAIIE 276 (291)
T ss_dssp EECCHHHHHHHHHHC--
T ss_pred EEcCHHHHHHHHHHHHH
Confidence 99999999999998874
No 32
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.8e-35 Score=226.36 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=139.0
Q ss_pred CchHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 2 TADARTLVQQARYEAAEFRF-KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 2 ~~D~~~l~~~~~~~~~~~~~-~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++|++.|+++++.+++.|++ +++++++++.+++++++.+ |++++++|||+|++||||||+ +||+||.+||+|++.+
T Consensus 57 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~ 133 (219)
T 1iru_N 57 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYE 133 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEE
Confidence 68999999999999999998 9999999999999999998 667777999999999999998 6999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH 156 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~ 156 (164)
++++|+|+|++.++++||+.|++.++||++||++++++||..+.++|..++ +++|++|++++ ++++++++|+..
T Consensus 134 ~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g--~~~~~~~~i~~~ 208 (219)
T 1iru_N 134 APSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG--VEIEGPLSTETN 208 (219)
T ss_dssp CSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE--EEEEEEECCCCC
T ss_pred CCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC--EEEcCCeeccch
Confidence 999999999999999999999532399999999999999999999998766 99999999975 899999887654
No 33
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.1e-35 Score=229.62 Aligned_cols=153 Identities=12% Similarity=0.194 Sum_probs=140.5
Q ss_pred CCchHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRF-----KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~-----~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~ 75 (164)
+++|++.|+++++.+++.|++ +++++++++.+++++++.+ |++++++|||+|++||||||+++||+||.+||+
T Consensus 56 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~ 133 (233)
T 1ryp_N 56 DISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLL 133 (233)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCC
Confidence 368999999999999999999 9999999999999999998 777777899999999999998569999999999
Q ss_pred cceeeeeEEeecCChHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHH
Q 031203 76 GHFFGHKATSAGLKEQEAINFLEKKMKNDP---AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIE 151 (164)
Q Consensus 76 G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~---~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ 151 (164)
|++.+++++|+|+|++.++++||+.|++.+ +||+|||++++++||..+.++|+.++ +++|++|+++++ +++++++
T Consensus 134 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~ 212 (233)
T 1ryp_N 134 GVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNL 212 (233)
T ss_dssp CCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEE
T ss_pred cCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChH
Confidence 999999999999999999999999984211 89999999999999999999998776 999999999843 9999998
Q ss_pred HHHHH
Q 031203 152 EIDEH 156 (164)
Q Consensus 152 ei~~~ 156 (164)
||+++
T Consensus 213 ~i~~~ 217 (233)
T 1ryp_N 213 QVENM 217 (233)
T ss_dssp ECCSC
T ss_pred hcccc
Confidence 88766
No 34
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.5e-34 Score=223.46 Aligned_cols=144 Identities=17% Similarity=0.294 Sum_probs=134.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|+++++++++++.+++++++.++.| .+||++++||||||+ +||+||++||+|++.+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~ 121 (234)
T 3unf_H 48 VAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSR 121 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEe
Confidence 4689999999999999999999999999999999999998654 469999999999998 7999999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEID 154 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~ 154 (164)
++++|+|+|++.++++||++| +++||+|||++++++||..+..+|+.++ +++|++|++++ ++++.+.+|+
T Consensus 122 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg--~~~l~~~~i~ 192 (234)
T 3unf_H 122 LPFTALGSGQGAAVALLEDRF--QPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGG--AKLQRALSTP 192 (234)
T ss_dssp CSEEEEETTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSC--EEEEEEEECC
T ss_pred ccEEEEcCCchhhHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCC--EEEeCceecc
Confidence 999999999999999999998 5899999999999999999999998776 99999999984 8988887764
No 35
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=9.3e-34 Score=215.92 Aligned_cols=139 Identities=15% Similarity=0.270 Sum_probs=129.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|+++++++++|+.+++++++.+ |+++ .|||+|++||||||++++|+||.+||+|++.+
T Consensus 57 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~ 132 (213)
T 1iru_M 57 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQR 132 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 4689999999999999999999999999999999999999 7764 79999999999999756699999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC
Q 031203 81 HKATSAGLKEQEAINFLEKKMK-------NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 143 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~-------~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~ 143 (164)
++++|+|+|++.++++||+.|+ ++++||+|||++++++||..+.++|..++ +++|++|++++.
T Consensus 133 ~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 203 (213)
T 1iru_M 133 DSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 203 (213)
T ss_dssp ESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEE
T ss_pred CCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCe
Confidence 9999999999999999999943 25899999999999999999999998766 999999999864
No 36
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=8.3e-35 Score=219.53 Aligned_cols=149 Identities=16% Similarity=0.192 Sum_probs=136.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++++.+++++++.+|.| .|||+|++||||||+++||+||. |+|++..
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~ 120 (199)
T 3unf_N 48 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLI 120 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCcee
Confidence 4689999999999999999999999999999999999999654 46999999999999867899999 9999877
Q ss_pred ee-EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 81 HK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 81 ~~-~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
+. ++++|+|++.++++||++| +++||+|||++++++||..+.++|..++ +++|++|++++..|++++++||++++.
T Consensus 121 ~~~~~~~Gsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 121 RQPFTIGGSGSSYIYGYVDAAY--KPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp ECSEEEEEGGGGGGHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred cCCEEEEccCHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 75 6667999999999999998 5899999999999999999999999876 999999999987799999999987653
No 37
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3.9e-33 Score=211.22 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=129.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcC-CCCCeEEEeCCCccee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFF 79 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~-~~gp~Ly~~dp~G~~~ 79 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++.+ |+++.+ ||+|++||||||+ ++||+||.+||+|++.
T Consensus 55 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~ 130 (204)
T 1ryp_J 55 LATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCID 130 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEE
T ss_pred cHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCcc
Confidence 4689999999999999999999999999999999999999 887643 9999999999996 4789999999999997
Q ss_pred ee-eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEc
Q 031203 80 GH-KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 148 (164)
Q Consensus 80 ~~-~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l 148 (164)
.+ .++|+|+|++.++++||+.| +++||+|||++++++||..+.++|..++ +++|++|++++..++.+
T Consensus 131 ~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 199 (204)
T 1ryp_J 131 EAKDFIVSGTASDQLFGMCESLY--EPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYL 199 (204)
T ss_dssp CCSSEEEEETTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEE
T ss_pred ccCceeEeccCHHHHHHHHhhhc--CCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEe
Confidence 76 56999999999999999998 5899999999999999999999998766 99999999987545544
No 38
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=9.2e-35 Score=228.55 Aligned_cols=153 Identities=12% Similarity=0.194 Sum_probs=140.3
Q ss_pred CCchHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCC
Q 031203 1 MTADARTLVQQARYEAAEFRF-----KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPA 75 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~-----~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~ 75 (164)
+++|++.|++++|.+++.|++ .++++++++.+++++++++ |++++++|||+|++||||||+++||+||.+||+
T Consensus 89 ~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~ 166 (266)
T 1g0u_M 89 DISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLL 166 (266)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCC
Confidence 368999999999999999998 9999999999999999998 777777899999999999998569999999999
Q ss_pred cceeeeeEEeecCChHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCHH
Q 031203 76 GHFFGHKATSAGLKEQEAINFLEKKMKNDP---AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIE 151 (164)
Q Consensus 76 G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~---~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~~ 151 (164)
|++.+++++|+|+|++.++++||+.|+..+ +||+|||++++++||..+.++|+.++ +++|++|+++++ +++++++
T Consensus 167 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ 245 (266)
T 1g0u_M 167 GVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNL 245 (266)
T ss_dssp CCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEE
T ss_pred CCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHH
Confidence 999999999999999999999999984211 89999999999999999999998776 999999999843 9999998
Q ss_pred HHHHH
Q 031203 152 EIDEH 156 (164)
Q Consensus 152 ei~~~ 156 (164)
||+++
T Consensus 246 ei~~~ 250 (266)
T 1g0u_M 246 QVENM 250 (266)
T ss_dssp ECCCC
T ss_pred Hhhhh
Confidence 88765
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=4.4e-33 Score=213.62 Aligned_cols=139 Identities=17% Similarity=0.330 Sum_probs=128.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCccee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYG-YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFF 79 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~ 79 (164)
+++|++.|+++++.+++.|++.++ ++++++.+++++++.+ |++ +.|||+|++||||||++++|+||.+||+|++.
T Consensus 57 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~ 132 (222)
T 1ryp_M 57 FAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLL--YGK--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYE 132 (222)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTT--TTSCCCEEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--Hhc--CCCCceEEEEEEEEcCCCCeEEEEECCCcCEE
Confidence 468999999999999999999999 9999999999999998 654 37899999999999975669999999999999
Q ss_pred eeeEEeecCChHHHHHHHHHhhc---------------CCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCC
Q 031203 80 GHKATSAGLKEQEAINFLEKKMK---------------NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 143 (164)
Q Consensus 80 ~~~~~aiG~~s~~~~~~Le~~~~---------------~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~ 143 (164)
+++++|+|+|++.++++||+.++ ++++||+|||++++++||..+.++|+.++ +++|++|++++.
T Consensus 133 ~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~ 212 (222)
T 1ryp_M 133 REQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGV 212 (222)
T ss_dssp EESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEE
T ss_pred ecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCe
Confidence 99999999999999999999853 36899999999999999999999998766 999999999864
No 40
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=3e-33 Score=211.38 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=129.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++++++++|+.+++++++.+. |. ..+.|||+|++||||||+++||+||.+||+|++.+
T Consensus 49 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~-~~-~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~ 126 (201)
T 1iru_K 49 EAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLA-DC-LRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAK 126 (201)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-HH-HTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HH-HhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEE
Confidence 47999999999999999999999999999999999987652 22 12347999999999999767899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcC
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 149 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 149 (164)
++++|+|+|++.++++||++| +++||++||++++++||..+.++|..++ +++|++|++++ +++++
T Consensus 127 ~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g--~~~~~ 192 (201)
T 1iru_K 127 APFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNG--IHDLD 192 (201)
T ss_dssp CSEEEESHHHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTE--EECCC
T ss_pred CCEEEECCcHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCC--eEEee
Confidence 999999999999999999998 5889999999999999999999999877 89999999985 66655
No 41
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=4e-33 Score=213.91 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=130.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|+++++++++++.+++++++.++.| .|||++++||||||+ +||+||.+||+|++.+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~ 121 (222)
T 1ryp_I 48 TAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDV 121 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEe
Confidence 4689999999999999999999999999999999999998654 479999999999998 7899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcC
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 149 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 149 (164)
++++|+|+|++.++++||++| +++||+|||++++++||..++++|..++ +++|++|+++++ ++++.
T Consensus 122 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~-~~~~~ 188 (222)
T 1ryp_I 122 GYYLSLGSGSLAAMAVLESHW--KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 188 (222)
T ss_dssp CSEEEESTTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred cCEEEECCCHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCC-EEEEe
Confidence 999999999999999999998 5889999999999999999999998766 899999999863 66554
No 42
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=5e-33 Score=210.73 Aligned_cols=143 Identities=15% Similarity=0.251 Sum_probs=130.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcC-CCCCeEEEeCCCccee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFF 79 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~-~~gp~Ly~~dp~G~~~ 79 (164)
+++|++.|+++++.+++.|+++++++++++.+++++++.+ |+++ ..||+|++||||||+ ++||+||.+||+|++.
T Consensus 56 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~ 131 (205)
T 1iru_J 56 LATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPM 131 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCcc
Confidence 4689999999999999999999999999999999999999 8875 349999999999995 4789999999999997
Q ss_pred ee-eEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcC
Q 031203 80 GH-KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 149 (164)
Q Consensus 80 ~~-~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 149 (164)
.+ .++|+|+|++.++++||+.| +++||+|||++++++||..+.++|..++ +++|++|++++..++.++
T Consensus 132 ~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 201 (205)
T 1iru_J 132 VTDDFVVSGTCAEQMYGMCESLW--EPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLK 201 (205)
T ss_dssp ECSSEEEEETTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBC
T ss_pred ccCCeeEeeeCHHHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEee
Confidence 76 56999999999999999998 5799999999999999999999998866 999999999875455443
No 43
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8e-33 Score=209.70 Aligned_cols=140 Identities=15% Similarity=0.182 Sum_probs=129.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|++++++ ++|+.+++++++.+|.|+++ |++++||||||+++||+||.+||+|++.+
T Consensus 57 ~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~ 130 (205)
T 1ryp_H 57 SAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHK 130 (205)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEe
Confidence 3689999999999999999999999 99999999999999988652 99999999999767899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEc
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 148 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l 148 (164)
++++|+|+|++.++++||++| +++||++||++++++||..+.++|..++ +++|++|++++...+.+
T Consensus 131 ~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 131 LPYAIAGSGSTFIYGYCDKNF--RENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp ESEEEESGGGGGGHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred cCEEEEEecHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 999999999999999999998 5889999999999999999999998766 99999999987533334
No 44
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.7e-32 Score=214.98 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=129.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|++.++++++++.+++++++.++.| .|||++++||||||+ .||+||++||+|++.+
T Consensus 77 ~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~ 150 (261)
T 3nzj_H 77 TAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDV 150 (261)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred CHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEe
Confidence 4689999999999999999999999999999999999988443 469999999999998 7899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcC
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 149 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~ 149 (164)
++++|+|+|++.++++||++| +++||+|||++++++||..+..+|..++ +++|++|+++++ ++++.
T Consensus 151 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~-~~~~~ 217 (261)
T 3nzj_H 151 GYYLSLGSGSLAAMAVLESHW--KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 217 (261)
T ss_dssp CSEEEESTTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred cCeEEeccchHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCc-EEEec
Confidence 999999999999999999998 6899999999999999999999998776 999999999975 55543
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=5e-32 Score=209.33 Aligned_cols=140 Identities=18% Similarity=0.215 Sum_probs=129.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
++||++.|+++++.+++.|+++++++++++.+++++++.++.| .+||++++||||||+ +||+||.+||+|++.+
T Consensus 48 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~ 121 (234)
T 1iru_I 48 TAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRY-----RGYIGAALVLGGVDV-TGPHLYSIYPHGSTDK 121 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEECS-SCEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-----CCCCceeEEEEEEcC-CCCEEEEECCCCCEEe
Confidence 4689999999999999999999999999999999999998654 359999999999998 7899999999999999
Q ss_pred eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEEcCCCcEEEcCH
Q 031203 81 HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 150 (164)
Q Consensus 81 ~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~~~~~~~k~l~~ 150 (164)
++++|+|+|++.++++||+.| +++||++||++++++||..+..+|..++ +++|++|++++ ++++.+
T Consensus 122 ~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g--~~~~~~ 188 (234)
T 1iru_I 122 LPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNK--LDFLRP 188 (234)
T ss_dssp CSEEEESTTHHHHHHHHHHSC--CTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTE--EECCSE
T ss_pred cCEEEECCchHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCc--EEEEcc
Confidence 999999999999999999998 5889999999999999999999998876 99999999974 676654
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.91 E-value=4.4e-24 Score=157.36 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=101.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|+++++.+++.|+++ +++.++++.|.++++++.|||++++|++ | ||+||.+||+|++.+
T Consensus 49 ~~aD~~~l~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~ 114 (171)
T 1m4y_A 49 SVADAMTLFDRFEAKLREWGGN---------LTKAAVELAKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQ 114 (171)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEEC
T ss_pred cHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEe
Confidence 4689999999999999988744 2444455555566677788999999988 5 799999999999999
Q ss_pred ee--EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEE
Q 031203 81 HK--ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 138 (164)
Q Consensus 81 ~~--~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii 138 (164)
++ ++|+|+|++.++++||+.|+. ++||. .+++++||..+.+||..++ +++|.++
T Consensus 115 ~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 115 PDDDAAAIGSGGPYALAAAKALLRN-TDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp CSSSEEEESTTHHHHHHHHHHHHHH-CCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred cCCCEEEECCcHHHHHHHHHHhccc-CCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 88 999999999999999999941 78997 6789999999999998877 8888763
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.91 E-value=7e-24 Score=157.64 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=104.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|.++++.+++.|+ | .+++.++++.|.++++...|||++++||| | ||+||.+||+|++.+
T Consensus 55 ~~aD~~~l~~~~~~~~~~y~---g------~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~ 120 (180)
T 2z3b_A 55 SVADAFTLFEKFEAKLEEYN---G------NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIE 120 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHTT---T------CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEEC
T ss_pred hHHHHHHHHHHHHHHHHHhc---C------ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEE
Confidence 46899999999999999987 3 34445556667788888899999999999 3 699999999999998
Q ss_pred e--eEEeecCChHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEE
Q 031203 81 H--KATSAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 138 (164)
Q Consensus 81 ~--~~~aiG~~s~~~~~~Le~~~~~~~-~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii 138 (164)
+ +++|+|+|++.++++||+.|++.+ +||.|| ++.+||..+.++|..++ +++|.+|
T Consensus 121 ~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 121 PDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp CSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred eCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 4 999999999999999999994211 899999 46799999999999888 8999887
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.91 E-value=7.9e-24 Score=156.47 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=103.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhccCccccceeeEEEEEcCCCCCeEEEeCCCcceee
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG 80 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~q~yt~~~~~rP~gv~~iiaG~d~~~gp~Ly~~dp~G~~~~ 80 (164)
+++|++.|.++++.+++.|++ + ++..++.+.|.++++++.||+ +.+++|+| ||+||.+||+|++.+
T Consensus 49 ~~aD~~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~ 114 (174)
T 1g3k_A 49 GTADAFTLFELFERKLEMHQG------H---LLKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQ 114 (174)
T ss_dssp CHHHHHHHHHHHHHHHHHTTT------C---HHHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEEC
T ss_pred cHHHHHHHHHHHHHHHHHhcC------c---HHHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEe
Confidence 468999999999999999875 3 355556666777877778886 57778887 699999999999999
Q ss_pred ee---EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCC-eEEEEEEE
Q 031203 81 HK---ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVS 139 (164)
Q Consensus 81 ~~---~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~-~iei~ii~ 139 (164)
++ ++|+|+|++.++++||+.|+ .++||.+ +++.+||..+.++|..++ +++|.+|+
T Consensus 115 ~~~~~~~a~Gsgs~~a~~~le~~~~-~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 115 PEEDQILAIGSGGNYALSAARALVE-NTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp CCTTCEEEESTTHHHHHHHHHHHHH-HCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred cCCCcEEEEcccHHHHHHHHHHhcc-cCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 88 99999999999999999994 1789965 799999999999998877 89999985
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=83.13 E-value=3.3 Score=27.80 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCeEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 031203 130 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 130 ~~~iei~ii~~~~~-~~k~l~~~ei~~~l~~~~~ 162 (164)
++.+-|.|++++++ .+|.++|+++-++..++.+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e 99 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTE 99 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHH
Confidence 45788999999876 4689999999998887753
No 50
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=66.97 E-value=8.4 Score=24.96 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=21.0
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
|.+.+++++.|+.++|++|......
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~ 55 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGI 55 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHH
T ss_pred eEeecCCCCEEEecCHHHHHHHHHh
Confidence 6788887778999999999988654
No 51
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.96 E-value=14 Score=24.79 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=21.9
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 134 EVGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 134 ei~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
-|.+.+++++.||.++|++|......
T Consensus 27 ~I~W~~~~~g~Fklvdp~~VArlWG~ 52 (118)
T 2dao_A 27 FIRWEDKESKIFRIVDPNGLARLWGN 52 (118)
T ss_dssp TEEEEEGGGTEEEESCHHHHHHHHHH
T ss_pred ceEeeCCCCCeEEEeCHHHHHHHHHh
Confidence 38899988778999999999888654
No 52
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=54.91 E-value=18 Score=23.68 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.1
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
|.+++++.+.|++++|++|......
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~ 49 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQ 49 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHH
T ss_pred cccccCCCceEEecCHHHHHHHHHh
Confidence 8899987778999999999887653
No 53
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=52.72 E-value=13 Score=24.55 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.9
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
|.+.+++.+.|+.++|++|......
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~ 53 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQ 53 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHh
Confidence 6788887778999999999888653
No 54
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=49.04 E-value=7.5 Score=30.39 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=34.2
Q ss_pred CeEEEeCCCcceee-eeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHH
Q 031203 67 PRLFKCDPAGHFFG-HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQ 114 (164)
Q Consensus 67 p~Ly~~dp~G~~~~-~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~ 114 (164)
|..|-+|+.|.+.. |+.+..+.....+...|++.. ..+|++.++++
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~--~~~~~~~~~I~ 149 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLI--EEDLSLNKHIE 149 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHH--HHHTSCCHHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhc--hhhhHHHHHHH
Confidence 67899999999987 456677778888888888764 24555555554
No 55
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=47.01 E-value=51 Score=20.75 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 031203 104 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 161 (164)
Q Consensus 104 ~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~~ 161 (164)
.++++.++..+.+...+... ....+.+.+++.+|.-+.+.+.+|++..++-++
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 45789999888877655421 223799999999876688889999999887544
No 56
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=40.80 E-value=70 Score=21.76 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=27.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 40 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~ 40 (164)
|+.|--.+++++| .|..+++..++++.|++.++..+
T Consensus 62 LTe~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 4455666777666 57788999999999999886544
No 57
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=39.82 E-value=63 Score=21.43 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=26.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 40 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~ 40 (164)
|+.|--.+++++| .|..+++..++++.|++.++..+
T Consensus 46 LTe~HW~VI~flR----~~Y~e~~~~P~iR~l~K~~~~~~ 81 (115)
T 1sau_A 46 LTEEHWKIIRYLR----DYFIKYGVAPPVRMLVKHCKKEV 81 (115)
T ss_dssp CCHHHHHHHHHHH----HHHHHHSSCCCHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHHHHh
Confidence 3455666777666 57788999999999999885443
No 58
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=38.41 E-value=24 Score=18.94 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHH
Q 031203 105 PAFTFQETVQTAIST 119 (164)
Q Consensus 105 ~~ls~eea~~l~~~a 119 (164)
|+||.||-+.+|.+-
T Consensus 2 p~mtEEEq~ALA~rm 16 (45)
T 3a1q_C 2 PLGSEEEQFALALKM 16 (45)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH
Confidence 689999999888763
No 59
>2lrg_A Uncharacterized protein; unknown function; NMR {Bacteroides vulgatus} PDB: 3u6g_A*
Probab=37.98 E-value=33 Score=22.51 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=26.6
Q ss_pred hccCccccceeeEEEEEcCCCCC-eEEEeCCCcceeeeeE
Q 031203 45 QHAYMRPLGVVAMVLSIDEECGP-RLFKCDPAGHFFGHKA 83 (164)
Q Consensus 45 ~~~~~rP~gv~~iiaG~d~~~gp-~Ly~~dp~G~~~~~~~ 83 (164)
|++....|-+++.+++.|. +|| .|| |-.|.+....+
T Consensus 16 QSG~td~Fe~~~~fGa~n~-~GpakLY--~e~GeYlGdSy 52 (126)
T 2lrg_A 16 QSGDTDSFEVSVSIGGADK-GGPAKLY--NDKGEYIGDSY 52 (126)
T ss_dssp EEESGGGEEEEEEEECEET-TEECCEE--CTTSCEEESEE
T ss_pred ecCCccceEEEEEEeeccC-CCCceee--cCCCcEechhh
Confidence 4556678999999999998 776 566 56677766544
No 60
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=34.26 E-value=76 Score=20.62 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=25.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031203 1 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIA 37 (164)
Q Consensus 1 l~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls 37 (164)
|+.+-..+++++|. |..++|..++++.+++.+.
T Consensus 42 LTe~HW~vI~flR~----yY~e~~~~P~iR~l~K~~~ 74 (105)
T 3or1_C 42 GSADHQKIIDFLQD----YYKANGIAPMVRILSKNTG 74 (105)
T ss_dssp CCHHHHHHHHHHHH----HHHHHSSCCCHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHC
Confidence 34556677776664 6678999999999999875
No 61
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=33.91 E-value=52 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=16.1
Q ss_pred CCCeEEEeCCCcceeeeeEEe
Q 031203 65 CGPRLFKCDPAGHFFGHKATS 85 (164)
Q Consensus 65 ~gp~Ly~~dp~G~~~~~~~~a 85 (164)
.|-.+|..||+|...+.....
T Consensus 132 ~g~~~~~~DPdG~~iel~~~~ 152 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEIRCDP 152 (156)
T ss_dssp CCEEEEEECTTSCEEEEEECC
T ss_pred CccEEEEECCCCCEEEEEecC
Confidence 456899999999998865433
No 62
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=33.21 E-value=66 Score=20.30 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.2
Q ss_pred EEEEEcCCCcEEEc--CHHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVL--SIEEIDEHLTA 159 (164)
Q Consensus 135 i~ii~~~~~~~k~l--~~~ei~~~l~~ 159 (164)
|.+.+++.+.|+.+ .|++|......
T Consensus 21 I~W~~~~~g~Fk~~~~~~e~VArlWG~ 47 (89)
T 1pue_E 21 IWWVDKDKGTFQFSSKHKEALAHRWGI 47 (89)
T ss_dssp EEEEETTTTEEEECTTTHHHHHHHHHH
T ss_pred eEeecCCCcEEEEecCChHHHHHHhhc
Confidence 78999877779986 68999888654
No 63
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=32.55 E-value=22 Score=20.74 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=24.0
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 119 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~a 119 (164)
.+.|+....+...+++.....++++.++.++.+++.
T Consensus 25 ~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk~ 60 (62)
T 1ixs_A 25 AALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKR 60 (62)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467888888888887652112467888877776653
No 64
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=31.82 E-value=1.2e+02 Score=24.15 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=42.6
Q ss_pred eEEEEEcCCCCCeEEEeCCCcceeeeeEEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 031203 56 AMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 120 (164)
Q Consensus 56 ~iiaG~d~~~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al 120 (164)
.||.-+- +|-++..+|..|.+.....+++|.|.-.-...|=. ...+.+|..++|.+.=
T Consensus 177 yllVnIG--sGvSiikv~~~~~f~rvgG~siGGGTflGL~~lLt-----g~~~~dEl~~lA~~Gd 234 (360)
T 2i7n_A 177 MLLVNMG--SGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLT-----GCETFEEALEMAAKGD 234 (360)
T ss_dssp EEEEEES--SSEEEEEEEETTEEEEEEEESCSHHHHHHHHHHHH-----CCCSHHHHHHHHHHCC
T ss_pred eEEEEeC--CCcEEEEEcCCCCEEEeccccCccHhHHHHHHHHh-----CCCCHHHHHHHHHcCC
Confidence 3455553 35589999988999999999999997665544332 2369999999987653
No 65
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=30.83 E-value=68 Score=19.17 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 031203 91 QEAINFLEKKMKNDPAFTFQETVQTAIS 118 (164)
Q Consensus 91 ~~~~~~Le~~~~~~~~ls~eea~~l~~~ 118 (164)
..|+-.|..+|+ +.++|+-|.++.|..
T Consensus 20 PsAYyLL~~~yk-kg~FsL~ELiKFAks 46 (75)
T 2kxe_A 20 PSAYYLLVGHFN-EGKFSLIELIKFAKS 46 (75)
T ss_dssp HHHHHHHHHHHH-TTSSCHHHHHHHHHH
T ss_pred chHHHHHHHHhh-cccccHHHHHHHHHh
Confidence 567788888885 448999999999764
No 66
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=27.84 E-value=1.1e+02 Score=22.18 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCC
Q 031203 104 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 143 (164)
Q Consensus 104 ~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~ 143 (164)
.+.+|+++|.+++..++..+.++.. .+.|.|++..+.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g~---pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDGR---HVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC---CEEEEEEeCCCC
Confidence 5789999999999999999986543 688999987664
No 67
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=27.67 E-value=1.2e+02 Score=19.38 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=18.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhhhhc-----cCcccc
Q 031203 18 EFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPL 52 (164)
Q Consensus 18 ~~~~~~~~~i~~~~l~~~ls~~~q~yt~~-----~~~rP~ 52 (164)
.++++.| ++++..|..+.++ |... .++|||
T Consensus 41 lr~YR~G--~~I~~Fc~kLl~L---yG~~Rk~LL~gmRpF 75 (98)
T 4fqn_A 41 LHEYRNG--ASIHEFCINLRQL---YGDSRKFLLLGLRPF 75 (98)
T ss_dssp HHHHHTT--CCHHHHHHHHHHH---HCGGGGGGGGGGGGG
T ss_pred HHHHHcC--CCHHHHHHHHHHH---hchHHHHHHhhccCC
Confidence 3344555 6788877777665 4433 366777
No 68
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=24.78 E-value=1.5e+02 Score=19.64 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=37.3
Q ss_pred EcCCCCC--eEE-EeCCCcceeeeeEEeecCCh-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 61 IDEECGP--RLF-KCDPAGHFFGHKATSAGLKE-QEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 61 ~d~~~gp--~Ly-~~dp~G~~~~~~~~aiG~~s-~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
.++.-|- .|| .+|+.|.+....+...|.+. +..-+++-... .+.|++||.++.-..+.
T Consensus 34 ~np~CGD~i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i---~Gkt~~ea~~i~~~~i~ 95 (129)
T 3lvl_A 34 GAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWV---KGKSLDEAQAIKNTDIA 95 (129)
T ss_dssp ECTTTCCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHH---TTCCHHHHHTCCHHHHH
T ss_pred cCCCCCCEEEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHH
Confidence 4554453 344 56766888888887777663 44445555554 56899999988765443
No 69
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=24.38 E-value=1.5e+02 Score=22.07 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=44.8
Q ss_pred EEeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 031203 83 ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 161 (164)
Q Consensus 83 ~~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~~ 161 (164)
.-.+|.|..++-+++-... .+.++++|+++|..+=.....+ .|. ...+.+||++++.++.
T Consensus 249 vdttGAGD~f~a~~~~~l~---~g~~~~~a~~~A~~~aa~~v~~--------------~G~--~~~~~~ev~~~l~~~~ 308 (309)
T 3umo_A 249 QSTVGAGDSMVGAMTLKLA---ENASLEEMVRFGVAAGSAATLN--------------QGT--RLCSHDDTQKIYAYLS 308 (309)
T ss_dssp SCCTTHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHTTS--------------STT--CCCCHHHHHHHHHHHT
T ss_pred CCCcChHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC--------------CCC--CCCCHHHHHHHHHHhc
Confidence 3468999999999998875 4689999999998876655532 111 1357789999988764
No 70
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=24.13 E-value=76 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.5
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
|.+.++++ .||.+++++|......
T Consensus 25 I~Wt~~~g-eFklvdpe~VArLWG~ 48 (157)
T 1hbx_G 25 ICWTSNDG-QFKLLQAEEVARLWGI 48 (157)
T ss_dssp EEECSSSS-CEEETTHHHHHHHHHH
T ss_pred eEEeCCCC-EEEecCcHHHHHHHHh
Confidence 66777765 6999999999988764
No 71
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=23.93 E-value=1.1e+02 Score=19.55 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=24.6
Q ss_pred CCCeEEEeCCCcceeeeeEEeecCChHHHHHHHHHhh
Q 031203 65 CGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 101 (164)
Q Consensus 65 ~gp~Ly~~dp~G~~~~~~~~aiG~~s~~~~~~Le~~~ 101 (164)
.-|.++-+|+.|................+...|++..
T Consensus 105 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 105 GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141 (152)
T ss_dssp SSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence 3599999999999865433222233467777777764
No 72
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=23.28 E-value=74 Score=21.71 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCC
Q 031203 105 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 143 (164)
Q Consensus 105 ~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~ 143 (164)
+.+|.++|.+++..++..+.++.. .+.|.|++..+.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~g~---~v~IaVvD~~G~ 45 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEINV---AVVFSVVDRGGN 45 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCC---CEEEEEEECCCC
Confidence 458999999999999998875432 688999987654
No 73
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=28.92 E-value=17 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=19.9
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHH
Q 031203 134 EVGVVSKENPEFRVLSIEEIDEHLT 158 (164)
Q Consensus 134 ei~ii~~~~~~~k~l~~~ei~~~l~ 158 (164)
-|.+.+++++.||.++|++|.....
T Consensus 23 ~I~Wt~k~~geFklvdpe~VArlWG 47 (128)
T 2lf8_A 23 FIRWEDKESKIFRIVDPNGLARLWG 47 (128)
Confidence 4677787776799999999987754
No 74
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=22.14 E-value=34 Score=21.88 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
|.+.++++ .|+.++|++|......
T Consensus 24 I~W~~~~g-~Fkl~d~~~VArlWG~ 47 (93)
T 1bc8_C 24 ICWTSNDG-QFKLLQAEEVARLWGI 47 (93)
T ss_dssp SEECSSSS-EEECTTHHHHHHHHHH
T ss_pred eEEeCCCC-EEEecCHHHHHHHHHh
Confidence 56667664 7999999999988654
No 75
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=22.04 E-value=82 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=29.3
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 121 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~ 121 (164)
.+.|.....+...+.+.....++++.++.++.|++.|.
T Consensus 172 ~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk~L~ 209 (212)
T 2ztd_A 172 VGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLG 209 (212)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 67899999888888875321357899999999888774
No 76
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=21.87 E-value=69 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 031203 106 AFTFQETVQTAISTLQSVLQ 125 (164)
Q Consensus 106 ~ls~eea~~l~~~al~~~~~ 125 (164)
+++.|||++.|+..|.+..-
T Consensus 21 ~~~~EeALe~ar~~L~~g~~ 40 (116)
T 2gdt_A 21 GDSVEEALSEAREHLKNGTC 40 (116)
T ss_dssp CSSHHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHhhcCCc
Confidence 68999999999999987643
No 77
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=21.69 E-value=1e+02 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=15.4
Q ss_pred EcCCCCCeEEEeCCCcceeee
Q 031203 61 IDEECGPRLFKCDPAGHFFGH 81 (164)
Q Consensus 61 ~d~~~gp~Ly~~dp~G~~~~~ 81 (164)
.+...|-..|..||+|+..+-
T Consensus 128 ~~~~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 128 TDMGPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp EECSSCEEEEEECSSSCEEEE
T ss_pred EEcCCeEEEEEECCCCCEEEE
Confidence 344346678889999998874
No 78
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=21.64 E-value=1.8e+02 Score=21.47 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=43.1
Q ss_pred EeecCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 031203 84 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 161 (164)
Q Consensus 84 ~aiG~~s~~~~~~Le~~~~~~~~ls~eea~~l~~~al~~~~~~d~~~~~iei~ii~~~~~~~k~l~~~ei~~~l~~~~ 161 (164)
-.+|.|..++-+++-... .+.++++|++.|..+-.....+. | ....+.+||++++.++.
T Consensus 250 dttGAGDaf~a~~~~~l~---~g~~~~~a~~~A~~~aa~~~~~~--------------G--~~~~~~~~v~~~~~~~~ 308 (309)
T 3cqd_A 250 STVGAGDSMVGAMTLKLA---ENASLEEMVRFGVAAGSAATLNQ--------------G--TRLCSHDDTQKIYAYLS 308 (309)
T ss_dssp CCTTHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHTC---------------------CCCHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHcCc--------------C--CCCCCHHHHHHHHHHhh
Confidence 468999999999998875 46799999999998877665331 1 11246788988888763
No 79
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.01 E-value=40 Score=19.27 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=14.4
Q ss_pred EEEcCHHHHHHHHHHhhc
Q 031203 145 FRVLSIEEIDEHLTAISE 162 (164)
Q Consensus 145 ~k~l~~~ei~~~l~~~~~ 162 (164)
++=++++||+.||.++.+
T Consensus 17 ~rGY~~~EVD~FLd~v~~ 34 (57)
T 2wuj_A 17 FRGYDEDEVNEFLAQVRK 34 (57)
T ss_dssp TTEEEHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 345889999999998763
No 80
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=20.78 E-value=41 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=18.4
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHH
Q 031203 135 VGVVSKENPEFRVLSIEEIDEHLTA 159 (164)
Q Consensus 135 i~ii~~~~~~~k~l~~~ei~~~l~~ 159 (164)
|.+.+. ++.|+.++|++|......
T Consensus 25 I~W~~~-~g~Fklvd~e~VArlWG~ 48 (98)
T 1fli_A 25 ITWEGT-NGEFKMTDPDEVARRWGE 48 (98)
T ss_dssp EECTTS-SSSCEECCHHHHHHHHHH
T ss_pred eEEeCC-CCEEEEcCHHHHHHHHHh
Confidence 566664 457999999999987654
Done!