Query 031204
Match_columns 164
No_of_seqs 218 out of 1696
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 100.0 1.2E-35 2.6E-40 203.5 15.3 164 1-164 1-168 (168)
2 cd04038 C2_ArfGAP C2 domain pr 100.0 7.8E-32 1.7E-36 185.5 19.0 143 5-147 1-145 (145)
3 cd04016 C2_Tollip C2 domain pr 100.0 4E-27 8.6E-32 157.3 13.9 114 5-155 1-121 (121)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 7.9E-25 1.7E-29 146.8 14.3 114 7-157 1-121 (121)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 5E-25 1.1E-29 148.7 13.1 87 8-94 1-95 (126)
6 cd08375 C2_Intersectin C2 doma 99.9 2.6E-24 5.6E-29 146.9 15.6 121 3-155 12-135 (136)
7 cd08376 C2B_MCTP_PRT C2 domain 99.9 2.5E-24 5.4E-29 143.2 14.5 112 7-156 1-115 (116)
8 cd08391 C2A_C2C_Synaptotagmin_ 99.9 1.5E-24 3.2E-29 145.2 13.1 112 6-155 1-121 (121)
9 cd08681 C2_fungal_Inn1p-like C 99.9 2.7E-24 5.9E-29 143.5 12.8 112 6-155 1-118 (118)
10 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 8.5E-24 1.8E-28 141.7 14.2 88 8-95 2-93 (121)
11 cd08379 C2D_MCTP_PRT_plant C2 99.9 5.3E-24 1.1E-28 143.2 13.1 90 7-96 1-101 (126)
12 cd08678 C2_C21orf25-like C2 do 99.9 2.2E-23 4.7E-28 140.7 14.8 114 8-159 1-123 (126)
13 cd04024 C2A_Synaptotagmin-like 99.9 1.5E-23 3.1E-28 141.7 13.8 89 6-94 1-94 (128)
14 cd04022 C2A_MCTP_PRT_plant C2 99.9 1.2E-23 2.6E-28 142.1 13.2 87 7-93 1-94 (127)
15 cd04036 C2_cPLA2 C2 domain pre 99.9 1.5E-23 3.2E-28 140.2 13.4 110 8-155 2-117 (119)
16 cd04044 C2A_Tricalbin-like C2 99.9 2.5E-23 5.5E-28 139.7 13.5 119 5-157 1-124 (124)
17 cd08377 C2C_MCTP_PRT C2 domain 99.9 4.5E-23 9.7E-28 137.7 14.4 89 6-94 1-91 (119)
18 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 9.2E-23 2E-27 136.7 14.1 87 8-94 2-91 (121)
19 cd04019 C2C_MCTP_PRT_plant C2 99.9 8E-23 1.7E-27 141.6 13.9 89 7-95 1-93 (150)
20 cd08400 C2_Ras_p21A1 C2 domain 99.9 2.4E-22 5.3E-27 135.6 14.9 113 5-157 3-124 (126)
21 cd04015 C2_plant_PLD C2 domain 99.9 2E-22 4.4E-27 140.9 14.7 114 5-156 6-158 (158)
22 cd04014 C2_PKC_epsilon C2 doma 99.9 3E-22 6.5E-27 136.2 14.8 115 5-157 3-130 (132)
23 cd04046 C2_Calpain C2 domain p 99.9 5E-22 1.1E-26 134.1 14.4 88 4-92 1-90 (126)
24 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 6.3E-22 1.4E-26 133.0 13.9 89 7-95 1-92 (123)
25 cd04039 C2_PSD C2 domain prese 99.9 5.1E-22 1.1E-26 130.5 12.7 92 6-97 1-100 (108)
26 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 7.1E-22 1.5E-26 134.4 13.7 119 7-156 1-133 (133)
27 cd08373 C2A_Ferlin C2 domain f 99.9 1.4E-21 3.1E-26 132.0 14.7 115 12-164 2-124 (127)
28 cd08378 C2B_MCTP_PRT_plant C2 99.9 5.2E-22 1.1E-26 133.0 11.9 83 8-94 2-86 (121)
29 cd08395 C2C_Munc13 C2 domain t 99.9 1.1E-21 2.3E-26 130.9 12.0 90 7-96 1-102 (120)
30 cd04028 C2B_RIM1alpha C2 domai 99.9 9.3E-22 2E-26 135.2 11.9 91 5-95 28-127 (146)
31 cd08381 C2B_PI3K_class_II C2 d 99.9 7.5E-22 1.6E-26 132.4 10.9 91 5-95 12-112 (122)
32 cd08677 C2A_Synaptotagmin-13 C 99.9 6.5E-22 1.4E-26 130.7 10.2 90 4-95 12-109 (118)
33 cd04043 C2_Munc13_fungal C2 do 99.9 5.2E-21 1.1E-25 129.0 14.9 114 7-156 2-121 (126)
34 cd04050 C2B_Synaptotagmin-like 99.9 3.9E-21 8.5E-26 125.7 12.4 85 8-95 2-89 (105)
35 cd04029 C2A_SLP-4_5 C2 domain 99.9 2.6E-21 5.7E-26 130.3 11.4 94 3-96 12-116 (125)
36 cd04052 C2B_Tricalbin-like C2 99.9 5.1E-21 1.1E-25 126.4 12.6 99 23-158 10-111 (111)
37 cd04027 C2B_Munc13 C2 domain s 99.9 6.8E-21 1.5E-25 128.7 13.1 88 6-93 1-101 (127)
38 cd08394 C2A_Munc13 C2 domain f 99.9 8.5E-21 1.8E-25 126.6 13.2 87 5-95 1-88 (127)
39 cd08387 C2A_Synaptotagmin-8 C2 99.9 4.4E-21 9.5E-26 129.0 11.6 94 3-96 13-114 (124)
40 cd04041 C2A_fungal C2 domain f 99.9 4.9E-21 1.1E-25 126.5 11.2 90 6-95 1-100 (111)
41 cd08382 C2_Smurf-like C2 domai 99.9 1.2E-20 2.7E-25 126.8 13.3 87 8-95 2-93 (123)
42 cd04017 C2D_Ferlin C2 domain f 99.9 2.1E-20 4.5E-25 127.6 14.4 119 7-159 2-135 (135)
43 cd04049 C2_putative_Elicitor-r 99.9 1E-20 2.3E-25 127.2 12.6 91 6-96 1-98 (124)
44 cd04045 C2C_Tricalbin-like C2 99.9 2.2E-20 4.8E-25 125.0 13.9 90 6-95 1-93 (120)
45 cd08688 C2_KIAA0528-like C2 do 99.9 8.9E-21 1.9E-25 125.0 11.4 88 8-95 1-95 (110)
46 cd08385 C2A_Synaptotagmin-1-5- 99.9 8.2E-21 1.8E-25 127.7 11.3 93 4-96 14-114 (124)
47 cd08393 C2A_SLP-1_2 C2 domain 99.9 5.9E-21 1.3E-25 128.6 9.7 92 4-95 13-115 (125)
48 cd04010 C2B_RasA3 C2 domain se 99.8 1.9E-20 4E-25 129.3 11.8 88 7-95 1-110 (148)
49 cd04032 C2_Perforin C2 domain 99.8 1.8E-20 4E-25 126.1 10.9 92 3-94 25-119 (127)
50 cd08685 C2_RGS-like C2 domain 99.8 1.1E-20 2.3E-25 126.3 9.3 92 4-95 10-110 (119)
51 cd08392 C2A_SLP-3 C2 domain fi 99.8 2E-20 4.4E-25 126.4 10.1 92 4-95 13-115 (128)
52 cd04031 C2A_RIM1alpha C2 domai 99.8 3.6E-20 7.9E-25 124.6 11.1 88 4-91 14-112 (125)
53 cd04013 C2_SynGAP_like C2 doma 99.8 1.8E-19 3.8E-24 123.7 14.3 89 4-96 9-103 (146)
54 cd04051 C2_SRC2_like C2 domain 99.8 5.3E-20 1.1E-24 123.9 10.9 90 7-96 1-99 (125)
55 cd04030 C2C_KIAA1228 C2 domain 99.8 6.6E-20 1.4E-24 123.7 11.2 92 4-95 14-117 (127)
56 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 3.6E-20 7.7E-25 130.0 10.2 92 4-95 25-127 (162)
57 cd08680 C2_Kibra C2 domain fou 99.8 5E-20 1.1E-24 123.7 10.0 92 4-95 12-114 (124)
58 cd04018 C2C_Ferlin C2 domain t 99.8 1.5E-19 3.2E-24 125.1 12.2 90 7-96 1-108 (151)
59 cd04011 C2B_Ferlin C2 domain s 99.8 1.7E-19 3.6E-24 119.1 12.0 88 6-96 4-97 (111)
60 cd08388 C2A_Synaptotagmin-4-11 99.8 2.4E-19 5.2E-24 121.2 13.0 92 4-95 14-115 (128)
61 cd04021 C2_E3_ubiquitin_ligase 99.8 8.1E-19 1.7E-23 118.2 15.3 88 7-96 3-93 (125)
62 cd04040 C2D_Tricalbin-like C2 99.8 1.8E-19 3.8E-24 119.6 11.5 89 8-96 1-93 (115)
63 cd08390 C2A_Synaptotagmin-15-1 99.8 1.6E-19 3.5E-24 121.1 11.4 95 3-97 11-114 (123)
64 cd08521 C2A_SLP C2 domain firs 99.8 1.1E-19 2.3E-24 122.0 10.2 93 3-95 11-114 (123)
65 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.9E-19 4.2E-24 121.1 11.4 93 4-96 14-115 (125)
66 cd08383 C2A_RasGAP C2 domain ( 99.8 4.1E-19 9E-24 118.1 12.4 79 8-89 2-85 (117)
67 cd08676 C2A_Munc13-like C2 dom 99.8 2.7E-19 5.8E-24 124.0 11.7 88 2-93 24-143 (153)
68 cd08389 C2A_Synaptotagmin-14_1 99.8 2.9E-19 6.2E-24 120.2 10.8 91 4-95 14-113 (124)
69 cd04009 C2B_Munc13-like C2 dom 99.8 2.5E-19 5.5E-24 121.9 10.7 92 4-95 14-119 (133)
70 PLN03200 cellulose synthase-in 99.8 1.1E-19 2.4E-24 162.4 11.1 118 1-157 1975-2101(2102)
71 PLN03008 Phospholipase D delta 99.8 5.3E-19 1.2E-23 147.1 14.0 120 5-162 13-183 (868)
72 cd08690 C2_Freud-1 C2 domain f 99.8 1.6E-18 3.4E-23 120.2 14.2 89 8-96 4-111 (155)
73 cd04037 C2E_Ferlin C2 domain f 99.8 6.1E-19 1.3E-23 118.6 11.7 88 7-94 1-93 (124)
74 cd04026 C2_PKC_alpha_gamma C2 99.8 4.4E-19 9.6E-24 120.3 10.8 90 5-94 12-110 (131)
75 cd08384 C2B_Rabphilin_Doc2 C2 99.8 6.5E-19 1.4E-23 119.8 10.4 89 3-91 10-108 (133)
76 cd08675 C2B_RasGAP C2 domain s 99.8 7.4E-19 1.6E-23 120.2 10.5 88 8-95 1-109 (137)
77 cd08691 C2_NEDL1-like C2 domai 99.8 4.6E-18 1E-22 116.0 14.2 88 7-96 2-108 (137)
78 cd08406 C2B_Synaptotagmin-12 C 99.8 7.7E-19 1.7E-23 119.8 10.0 88 4-91 13-110 (136)
79 cd08408 C2B_Synaptotagmin-14_1 99.8 8.6E-19 1.9E-23 119.9 10.1 91 3-93 12-113 (138)
80 cd08407 C2B_Synaptotagmin-13 C 99.8 8.3E-19 1.8E-23 119.7 9.9 88 4-91 13-112 (138)
81 cd08404 C2B_Synaptotagmin-4 C2 99.8 7.9E-19 1.7E-23 119.9 9.8 88 4-91 13-110 (136)
82 KOG0696 Serine/threonine prote 99.8 5.5E-20 1.2E-24 142.6 4.1 90 6-95 180-278 (683)
83 cd08692 C2B_Tac2-N C2 domain s 99.8 1.5E-18 3.2E-23 117.4 10.2 89 4-92 12-110 (135)
84 cd08686 C2_ABR C2 domain in th 99.8 1.3E-17 2.9E-22 109.9 13.3 79 8-91 1-92 (118)
85 cd00275 C2_PLC_like C2 domain 99.8 2.5E-17 5.3E-22 111.1 14.9 88 6-94 2-101 (128)
86 cd08402 C2B_Synaptotagmin-1 C2 99.8 2.9E-18 6.3E-23 117.1 9.8 89 4-92 13-111 (136)
87 cd08410 C2B_Synaptotagmin-17 C 99.8 3.2E-18 6.8E-23 116.8 9.6 88 4-91 12-109 (135)
88 cd08405 C2B_Synaptotagmin-7 C2 99.8 5.1E-18 1.1E-22 115.9 10.5 89 4-92 13-111 (136)
89 cd08403 C2B_Synaptotagmin-3-5- 99.8 7.1E-18 1.5E-22 114.9 10.0 88 4-91 12-109 (134)
90 KOG1028 Ca2+-dependent phospho 99.8 1.4E-17 3E-22 132.4 13.1 93 4-96 165-265 (421)
91 cd00276 C2B_Synaptotagmin C2 d 99.7 2.8E-18 6E-23 116.6 6.8 88 4-91 12-109 (134)
92 cd04048 C2A_Copine C2 domain f 99.7 4.1E-17 8.8E-22 109.1 11.3 87 11-97 5-105 (120)
93 cd04035 C2A_Rabphilin_Doc2 C2 99.7 3E-17 6.4E-22 110.2 10.7 92 4-96 13-115 (123)
94 cd08409 C2B_Synaptotagmin-15 C 99.7 3.9E-17 8.4E-22 111.7 9.9 89 4-92 13-110 (137)
95 KOG2059 Ras GTPase-activating 99.7 3E-17 6.5E-22 133.0 9.6 121 6-164 5-133 (800)
96 cd04047 C2B_Copine C2 domain s 99.7 2.5E-16 5.5E-21 103.6 10.6 85 10-95 4-101 (110)
97 PF00168 C2: C2 domain; Inter 99.7 3.8E-16 8.2E-21 97.4 8.4 79 8-86 1-85 (85)
98 KOG1011 Neurotransmitter relea 99.6 7.5E-16 1.6E-20 124.6 6.7 91 5-95 294-397 (1283)
99 COG5038 Ca2+-dependent lipid-b 99.6 2.7E-14 5.9E-19 121.5 13.4 94 3-96 433-531 (1227)
100 PLN02270 phospholipase D alpha 99.6 4.2E-14 9E-19 118.0 13.4 121 4-162 6-154 (808)
101 smart00239 C2 Protein kinase C 99.6 7E-14 1.5E-18 89.3 11.0 90 7-96 1-96 (101)
102 cd00030 C2 C2 domain. The C2 d 99.6 7.7E-14 1.7E-18 88.7 10.9 86 8-93 1-90 (102)
103 cd08374 C2F_Ferlin C2 domain s 99.5 8.7E-14 1.9E-18 94.0 10.5 89 8-96 2-125 (133)
104 PLN02223 phosphoinositide phos 99.5 5.1E-13 1.1E-17 107.6 13.7 92 6-97 409-513 (537)
105 COG5038 Ca2+-dependent lipid-b 99.5 1.8E-13 3.9E-18 116.5 9.1 99 1-99 1035-1137(1227)
106 KOG1028 Ca2+-dependent phospho 99.4 5.6E-13 1.2E-17 106.2 8.9 88 4-91 296-393 (421)
107 KOG0169 Phosphoinositide-speci 99.4 1.9E-12 4.1E-17 106.6 11.3 92 7-98 617-721 (746)
108 PLN02952 phosphoinositide phos 99.4 7.1E-12 1.5E-16 102.8 13.1 92 5-96 469-574 (599)
109 PLN02230 phosphoinositide phos 99.4 4.4E-12 9.6E-17 103.9 11.6 93 5-97 468-574 (598)
110 cd08689 C2_fungal_Pkc1p C2 dom 99.4 5.8E-12 1.3E-16 80.9 8.9 86 8-98 1-92 (109)
111 KOG1264 Phospholipase C [Lipid 99.3 6.4E-12 1.4E-16 104.0 9.0 92 6-97 1065-1165(1267)
112 PLN02222 phosphoinositide phos 99.3 1.9E-11 4.1E-16 100.0 11.7 94 5-98 451-558 (581)
113 KOG1031 Predicted Ca2+-depende 99.3 8.2E-12 1.8E-16 100.6 8.8 92 5-96 2-100 (1169)
114 PLN02228 Phosphoinositide phos 99.3 5.8E-11 1.2E-15 97.0 13.2 92 6-97 431-537 (567)
115 PLN02352 phospholipase D epsil 99.2 3.1E-10 6.8E-15 94.9 12.2 114 4-161 8-135 (758)
116 KOG1328 Synaptic vesicle prote 99.2 5.6E-12 1.2E-16 103.4 1.4 91 4-94 945-1049(1103)
117 KOG1328 Synaptic vesicle prote 99.1 5.9E-12 1.3E-16 103.2 0.0 88 8-95 116-273 (1103)
118 KOG2059 Ras GTPase-activating 98.9 3.9E-09 8.5E-14 86.6 6.4 96 13-116 138-255 (800)
119 KOG1326 Membrane-associated pr 98.8 3.7E-09 8.1E-14 89.5 3.6 85 7-91 614-703 (1105)
120 KOG0905 Phosphoinositide 3-kin 98.7 1.1E-08 2.4E-13 88.0 4.9 94 4-97 1522-1626(1639)
121 PLN02964 phosphatidylserine de 98.5 2.5E-07 5.4E-12 77.1 6.3 89 1-95 49-140 (644)
122 KOG1013 Synaptic vesicle prote 98.4 6.5E-07 1.4E-11 68.1 5.1 86 4-89 231-326 (362)
123 KOG1013 Synaptic vesicle prote 98.2 4.8E-07 1E-11 68.8 1.1 91 6-96 93-194 (362)
124 cd08684 C2A_Tac2-N C2 domain f 98.1 3.9E-06 8.4E-11 52.2 4.0 86 9-96 2-96 (103)
125 KOG1327 Copine [Signal transdu 98.1 7.7E-06 1.7E-10 66.3 6.4 81 13-94 143-236 (529)
126 cd08683 C2_C2cd3 C2 domain fou 98.1 1.4E-05 3E-10 53.4 6.0 89 8-96 1-134 (143)
127 KOG2060 Rab3 effector RIM1 and 97.9 4E-06 8.7E-11 64.9 1.5 92 4-95 267-367 (405)
128 KOG1011 Neurotransmitter relea 97.9 7.2E-05 1.6E-09 62.0 8.7 90 7-96 1126-1227(1283)
129 KOG3837 Uncharacterized conser 97.7 3.7E-05 8E-10 60.4 3.9 92 7-98 368-479 (523)
130 KOG1326 Membrane-associated pr 97.7 7.1E-06 1.5E-10 70.2 -0.9 82 8-89 208-301 (1105)
131 cd08693 C2_PI3K_class_I_beta_d 97.5 0.002 4.4E-08 45.7 10.1 101 6-114 8-135 (173)
132 cd08398 C2_PI3K_class_I_alpha 97.4 0.0031 6.8E-08 44.0 9.9 100 5-114 7-121 (158)
133 PF15627 CEP76-C2: CEP76 C2 do 97.3 0.0055 1.2E-07 42.5 9.8 92 5-96 8-119 (156)
134 cd08380 C2_PI3K_like C2 domain 97.3 0.0033 7.1E-08 43.7 8.6 87 6-92 8-107 (156)
135 KOG1265 Phospholipase C [Lipid 97.2 0.0011 2.4E-08 56.9 6.1 86 5-97 702-799 (1189)
136 cd08687 C2_PKN-like C2 domain 97.1 0.0058 1.3E-07 38.4 7.7 64 24-92 7-72 (98)
137 KOG1452 Predicted Rho GTPase-a 97.1 0.00088 1.9E-08 51.2 4.6 79 3-82 48-131 (442)
138 cd08399 C2_PI3K_class_I_gamma 97.0 0.015 3.1E-07 41.5 9.7 103 6-115 10-138 (178)
139 cd08397 C2_PI3K_class_III C2 d 96.9 0.0041 9E-08 43.5 6.6 69 24-92 28-107 (159)
140 cd04012 C2A_PI3K_class_II C2 d 96.9 0.017 3.7E-07 40.8 9.7 88 5-92 7-119 (171)
141 PF12416 DUF3668: Cep120 prote 96.8 0.039 8.4E-07 43.3 11.4 83 8-92 2-94 (340)
142 PF00792 PI3K_C2: Phosphoinosi 96.4 0.029 6.2E-07 38.4 7.7 54 39-92 23-85 (142)
143 PF10358 NT-C2: N-terminal C2 96.4 0.17 3.7E-06 34.3 14.4 89 4-95 5-107 (143)
144 PF15625 CC2D2AN-C2: CC2D2A N- 96.0 0.33 7.2E-06 34.2 12.6 69 25-94 36-108 (168)
145 KOG1327 Copine [Signal transdu 95.4 0.074 1.6E-06 43.8 7.1 61 38-98 43-108 (529)
146 smart00142 PI3K_C2 Phosphoinos 94.9 0.27 5.9E-06 31.5 7.4 67 8-74 13-91 (100)
147 PF11618 DUF3250: Protein of u 94.7 0.31 6.6E-06 31.8 7.2 67 29-97 2-78 (107)
148 cd08695 C2_Dock-B C2 domains f 94.6 0.95 2.1E-05 32.6 10.2 53 38-90 55-112 (189)
149 cd08694 C2_Dock-A C2 domains f 94.6 0.58 1.3E-05 33.8 9.0 53 38-90 55-114 (196)
150 PF14429 DOCK-C2: C2 domain in 94.1 0.25 5.5E-06 35.2 6.5 54 38-91 61-120 (184)
151 KOG1329 Phospholipase D1 [Lipi 91.2 0.3 6.4E-06 42.6 4.0 70 26-95 138-210 (887)
152 PF07162 B9-C2: Ciliary basal 90.4 4.7 0.0001 28.3 13.2 134 9-156 5-167 (168)
153 cd08679 C2_DOCK180_related C2 90.3 1.4 3E-05 31.2 6.3 53 38-91 55-115 (178)
154 KOG0694 Serine/threonine prote 89.9 0.13 2.7E-06 43.6 0.8 68 25-93 27-96 (694)
155 cd08696 C2_Dock-C C2 domains f 89.7 1.8 3.9E-05 30.9 6.4 54 38-91 56-118 (179)
156 cd08697 C2_Dock-D C2 domains f 88.7 2.7 5.9E-05 30.2 6.7 54 38-91 58-123 (185)
157 PTZ00447 apical membrane antig 88.2 12 0.00025 29.8 10.4 66 25-91 73-141 (508)
158 PF06219 DUF1005: Protein of u 82.2 26 0.00055 28.6 9.9 66 25-90 35-127 (460)
159 KOG0904 Phosphatidylinositol 3 81.7 11 0.00024 33.5 8.1 86 7-94 344-458 (1076)
160 KOG4028 Uncharacterized conser 79.9 9.7 0.00021 25.7 5.8 74 11-89 9-99 (175)
161 PF14909 SPATA6: Spermatogenes 75.5 23 0.0005 24.2 8.6 70 24-94 18-101 (140)
162 KOG0906 Phosphatidylinositol 3 72.2 4 8.7E-05 34.9 3.0 67 25-91 46-123 (843)
163 KOG4269 Rac GTPase-activating 68.9 2.3 5E-05 37.5 1.0 83 4-91 757-855 (1112)
164 KOG2419 Phosphatidylserine dec 63.3 0.53 1.2E-05 39.8 -3.7 69 6-75 280-356 (975)
165 PF01060 DUF290: Transthyretin 54.2 29 0.00063 21.0 3.8 27 62-88 10-36 (80)
166 PF12416 DUF3668: Cep120 prote 52.5 1.2E+02 0.0025 24.1 8.6 87 5-96 191-297 (340)
167 KOG3543 Ca2+-dependent activat 42.2 81 0.0018 27.4 5.6 80 8-89 343-426 (1218)
168 COG2828 Uncharacterized protei 36.1 2.2E+02 0.0048 22.6 9.1 35 23-58 41-80 (378)
169 PF15432 Sec-ASP3: Accessory S 33.4 1.5E+02 0.0033 19.9 5.6 58 102-159 22-80 (128)
170 PF10409 PTEN_C2: C2 domain of 31.0 1.6E+02 0.0034 19.4 9.4 86 7-93 5-98 (134)
171 TIGR03711 acc_sec_asp3 accesso 25.3 2.3E+02 0.0049 19.3 5.7 58 102-159 33-91 (135)
172 KOG4027 Uncharacterized conser 25.0 2.5E+02 0.0055 19.8 5.1 26 65-90 84-109 (187)
173 PF09923 DUF2155: Uncharacteri 21.0 1.5E+02 0.0033 18.5 3.1 31 5-35 26-56 (90)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=203.50 Aligned_cols=164 Identities=62% Similarity=0.971 Sum_probs=156.0
Q ss_pred CCcccEEEEEEEEEeEcCCCCCC-CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031204 1 MENLMGLLRVHVLRGVNLAVRDV-VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL 78 (164)
Q Consensus 1 ~~~~~g~L~v~v~~a~~L~~~~~-~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~ 78 (164)
|..+.|.|+|+|++|.||..+|+ +++||||++.++++ .+|+++.++.||.|||+|+|.+.++...|+++|||+|.++.
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence 78899999999999999999995 99999999999999 99999999999999999999999999999999999999999
Q ss_pred CceeEEEEEechhhhhhhccc-cc-CCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEE
Q 031204 79 DDKMGDAEFYITPFLEALKMR-LE-GLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 156 (164)
Q Consensus 79 ~~~lG~~~v~l~~l~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 156 (164)
||++|.++|++..+....... +. .++.|+.+..+.|...++..+++.+.+..|++.++.++++++.++|+++++++|+
T Consensus 81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~ 160 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWI 160 (168)
T ss_pred ccccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEe
Confidence 999999999999999876665 33 8888999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 031204 157 DIPGSRGL 164 (164)
Q Consensus 157 ~~~~~~~~ 164 (164)
+.+++.|+
T Consensus 161 ~~~~~~~~ 168 (168)
T KOG1030|consen 161 KLPGSVGL 168 (168)
T ss_pred cCcccccC
Confidence 99998874
No 2
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=100.00 E-value=7.8e-32 Score=185.50 Aligned_cols=143 Identities=61% Similarity=1.024 Sum_probs=135.0
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG 83 (164)
.|.|+|+|++|++|+..+.+.+||||++.++++ ++|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 489999999999999877778999999999999 9999999999999999999999888778999999999999999999
Q ss_pred EEEEechhhhhhhccc-ccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEeccccee
Q 031204 84 DAEFYITPFLEALKMR-LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVG 147 (164)
Q Consensus 84 ~~~v~l~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G 147 (164)
++.+++.++....... +..++.|..+..|.|...+++.+++.+++.+|++.++++++|+++++|
T Consensus 81 ~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 81 EAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 9999999999887776 778899999999999999999999999999999999999999999987
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.95 E-value=4e-27 Score=157.35 Aligned_cols=114 Identities=18% Similarity=0.418 Sum_probs=98.2
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCcee
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM 82 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~l 82 (164)
.|+|.|+|++|++++..+.|++||||++.++++ ++|++..+ +.||.|||+|.|.+.+....|.|+|||++.+++|++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 489999999999987666789999999999999 99999876 7999999999999976666799999999999999999
Q ss_pred EEEEEechh-hhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc----cceeeEEEEEEE
Q 031204 83 GDAEFYITP-FLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN----VEVGEVKIQLEW 155 (164)
Q Consensus 83 G~~~v~l~~-l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~G~l~l~l~~ 155 (164)
|.+.+++.. +..+.. .+.|++|.+ ...|+|||.|.|
T Consensus 81 G~~~i~l~~~~~~g~~-------------------------------------~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGET-------------------------------------LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCC-------------------------------------ccccEeCcCccCCCCceEEEEEEeC
Confidence 999999964 444321 278888866 457999999986
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.93 E-value=7.9e-25 Score=146.75 Aligned_cols=114 Identities=32% Similarity=0.522 Sum_probs=100.5
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG 83 (164)
+|+|+|++|++|+..+ .+.+||||++.+++. ++|+++.++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4899999999999988 789999999999874 9999999999999999999999776778999999999998999999
Q ss_pred EEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEeccc----ceeeEEEEEEEEe
Q 031204 84 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWID 157 (164)
Q Consensus 84 ~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~ 157 (164)
++.+++.++..+... +.|++|.+. ..|+|+|.+++.|
T Consensus 81 ~~~~~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELNKPT-------------------------------------EVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCCCCe-------------------------------------EEEEECCCCCCccCceEEEEEEEECC
Confidence 999999998865433 778888643 4699999999865
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.93 E-value=5e-25 Score=148.70 Aligned_cols=87 Identities=25% Similarity=0.522 Sum_probs=79.6
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC------CCCcEEEEEEeCCCCCCC
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD------SNLPIKLTVYDKDTFSLD 79 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~------~~~~l~i~v~d~~~~~~~ 79 (164)
++|+|++|+||+..+ .|.+||||++.+++. ++|+++.++.||.|||+|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999888 789999999999988 999999999999999999999975 345699999999999889
Q ss_pred ceeEEEEEechhhhh
Q 031204 80 DKMGDAEFYITPFLE 94 (164)
Q Consensus 80 ~~lG~~~v~l~~l~~ 94 (164)
++||++.+++.++..
T Consensus 81 ~~iG~~~i~l~~l~~ 95 (126)
T cd08682 81 KFLGQVSIPLNDLDE 95 (126)
T ss_pred ceeEEEEEEHHHhhc
Confidence 999999999998863
No 6
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.93 E-value=2.6e-24 Score=146.91 Aligned_cols=121 Identities=34% Similarity=0.541 Sum_probs=104.2
Q ss_pred cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCC
Q 031204 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLD 79 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~ 79 (164)
...|.|+|+|++|++|++.+ .+.+||||++.++++ ++|++++++.||.|||+|.|.+.++. ..|.|+|||++.+++|
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 46799999999999999988 889999999999988 99999999999999999999997654 5699999999999899
Q ss_pred ceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204 80 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW 155 (164)
Q Consensus 80 ~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 155 (164)
++||++.+++.++...... .++ ....|+.++++..|+|+|++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~------------------------------~~~--~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKE------------------------------SKG--PITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhcccccc------------------------------CCC--cEEEEeccccccceeEEEEEEe
Confidence 9999999999998763221 011 1256788888999999999876
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.93 E-value=2.5e-24 Score=143.23 Aligned_cols=112 Identities=28% Similarity=0.489 Sum_probs=99.7
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeE
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG 83 (164)
+|+|+|++|++|+..+ .+.+||||+++++++ ++|+++.++.||.|||+|.|.+..+ .+.|.|+|||++..+++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999988 789999999999988 9999999999999999999999765 567999999999988999999
Q ss_pred EEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEE
Q 031204 84 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 156 (164)
Q Consensus 84 ~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 156 (164)
++.++++++..+.. .+.|++|... .|+|++.++|.
T Consensus 81 ~~~~~l~~l~~~~~-------------------------------------~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQT-------------------------------------HSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCc-------------------------------------eEEEEEccCC-CcEEEEEEEec
Confidence 99999998776432 3899999864 69999999874
No 8
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.93 E-value=1.5e-24 Score=145.20 Aligned_cols=112 Identities=31% Similarity=0.649 Sum_probs=100.0
Q ss_pred EEEEEEEEEeEcCCCCCC-------CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCC
Q 031204 6 GLLRVHVLRGVNLAVRDV-------VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTF 76 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~~-------~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~ 76 (164)
|.|.|+|++|++|+..+. +.+||||+++++++ ++|+++.++.+|.|||+|.|.+.. ..+.|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 689999999999998762 57999999999988 999999999999999999999975 356799999999988
Q ss_pred CCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204 77 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW 155 (164)
Q Consensus 77 ~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 155 (164)
++++||.+.+++.++..+.. .+.|++|.+...|+|+++++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~-------------------------------------~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGF-------------------------------------IDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCc-------------------------------------cceEEECcCCCCceEEEEEeC
Confidence 89999999999999875432 289999998899999999997
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.92 E-value=2.7e-24 Score=143.47 Aligned_cols=112 Identities=31% Similarity=0.541 Sum_probs=95.7
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~ 81 (164)
|.|+|+|++|++|+..+ .+.+||||++.+++. ++|+++.+ +.||.|||+|.|.+..+ .+.|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 78999999999999988 889999999999988 99998765 78999999999999764 456999999999875 899
Q ss_pred eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc--cceeeEEEEEEE
Q 031204 82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGEVKIQLEW 155 (164)
Q Consensus 82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~l~l~l~~ 155 (164)
||++.+++.++..+... +.|+.|.. ...|+|+|+|+|
T Consensus 80 iG~~~~~l~~~~~~~~~-------------------------------------~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEF-------------------------------------DDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCC-------------------------------------CCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998764322 56666654 467999999986
No 10
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.92 E-value=8.5e-24 Score=141.72 Aligned_cols=88 Identities=19% Similarity=0.385 Sum_probs=79.8
Q ss_pred EEEEEEEeEcCCCCC--CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204 8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 8 L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG 83 (164)
|.|+|++|+||+..+ .+.+||||.+.++++ ++|++++++.||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999874 578999999999876 8999999999999999999999865677999999999999999999
Q ss_pred EEEEechhhhhh
Q 031204 84 DAEFYITPFLEA 95 (164)
Q Consensus 84 ~~~v~l~~l~~~ 95 (164)
.+.++++++...
T Consensus 82 ~~~i~l~~l~~~ 93 (121)
T cd08401 82 KVAIKKEDLHKY 93 (121)
T ss_pred EEEEEHHHccCC
Confidence 999999988753
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.92 E-value=5.3e-24 Score=143.16 Aligned_cols=90 Identities=28% Similarity=0.489 Sum_probs=81.9
Q ss_pred EEEEEEEEeEc---CCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC----
Q 031204 7 LLRVHVLRGVN---LAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS---- 77 (164)
Q Consensus 7 ~L~v~v~~a~~---L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~---- 77 (164)
.|+|+|++|+| |+.++ .|.+||||+++++++ .+|+++.++.||.|||+|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 78777 889999999999999 9999999999999999999999877778999999998874
Q ss_pred --CCceeEEEEEechhhhhhh
Q 031204 78 --LDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 78 --~~~~lG~~~v~l~~l~~~~ 96 (164)
+|++||++.+++..+..+.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~ 101 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR 101 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC
Confidence 8999999999999887654
No 12
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.91 E-value=2.2e-23 Score=140.71 Aligned_cols=114 Identities=22% Similarity=0.353 Sum_probs=97.5
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECC--E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEE
Q 031204 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGK--Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD 84 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~--~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~ 84 (164)
|.|+|++|+||+. ..+.+||||++.++. + ++|+++.++.||.|||.|.|.+......|.|+|||++..+++++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 6799999999988 678999999999974 4 99999999999999999999997556679999999999988999999
Q ss_pred EEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc------cceeeEEEEEEEEec
Q 031204 85 AEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN------VEVGEVKIQLEWIDI 158 (164)
Q Consensus 85 ~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~------~~~G~l~l~l~~~~~ 158 (164)
+.+++.++...... +.|++|.. ...|+|+++++|.+.
T Consensus 80 ~~i~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 80 AIVPFDELRKNPSG-------------------------------------RQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEeHHHhccCCce-------------------------------------eEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 99999998875432 45566542 358999999999875
Q ss_pred C
Q 031204 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 123 ~ 123 (126)
T cd08678 123 A 123 (126)
T ss_pred c
Confidence 4
No 13
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.91 E-value=1.5e-23 Score=141.71 Aligned_cols=89 Identities=36% Similarity=0.653 Sum_probs=81.5
Q ss_pred EEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCc
Q 031204 6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDD 80 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~~~~~ 80 (164)
|.|.|+|++|++|+..+ .+.+||||++.++++ ++|++++++.||.|||+|.|.+.. ..+.|.|+|||++..+.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 78999999999999876 468999999999888 999999999999999999999986 4567999999999988999
Q ss_pred eeEEEEEechhhhh
Q 031204 81 KMGDAEFYITPFLE 94 (164)
Q Consensus 81 ~lG~~~v~l~~l~~ 94 (164)
+||++.+++.++..
T Consensus 81 ~lG~~~i~l~~~~~ 94 (128)
T cd04024 81 YLGEFDIALEEVFA 94 (128)
T ss_pred cceEEEEEHHHhhc
Confidence 99999999999874
No 14
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=1.2e-23 Score=142.13 Aligned_cols=87 Identities=31% Similarity=0.483 Sum_probs=79.2
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCC-CC
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFS-LD 79 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~~~-~~ 79 (164)
.|+|+|++|++|++.+ .+.+||||++.++++ ++|+++.++.||.|||.|.|.+..+ ...|.|+|||++.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 4899999999999988 788999999999999 9999999999999999999999753 246999999999886 89
Q ss_pred ceeEEEEEechhhh
Q 031204 80 DKMGDAEFYITPFL 93 (164)
Q Consensus 80 ~~lG~~~v~l~~l~ 93 (164)
++||++.++++++.
T Consensus 81 ~~lG~v~i~l~~l~ 94 (127)
T cd04022 81 SFLGRVRISGTSFV 94 (127)
T ss_pred CeeeEEEEcHHHcC
Confidence 99999999999887
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.91 E-value=1.5e-23 Score=140.20 Aligned_cols=110 Identities=28% Similarity=0.480 Sum_probs=96.9
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~ 81 (164)
|+|+|++|++|+..+ .+.+||||++.+.+ . ++|+++.++.||.|||+|.|.+... ...|.|+|||++.. ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999888 78999999999863 3 9999999999999999999998754 34599999999998 9999
Q ss_pred eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEE
Q 031204 82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW 155 (164)
Q Consensus 82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~ 155 (164)
||++.+++.++..+.. .+.|+.|....+|+|++++..
T Consensus 81 iG~~~~~l~~l~~g~~-------------------------------------~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEK-------------------------------------VRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCc-------------------------------------EEEEEECCCCCCceEEEEEEe
Confidence 9999999998876543 389999998889999998864
No 16
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.91 E-value=2.5e-23 Score=139.75 Aligned_cols=119 Identities=29% Similarity=0.460 Sum_probs=99.2
Q ss_pred cEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC--E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCC
Q 031204 5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK--Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLD 79 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~--~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~ 79 (164)
+|.|+|+|++|++|+..+ .+.+||||++.+.+ . ++|+++.++.+|.|||.|.|.+....+.|.|+|||.+..+++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 589999999999999655 46789999999988 5 999999999999999999999985577899999999998899
Q ss_pred ceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEe
Q 031204 80 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID 157 (164)
Q Consensus 80 ~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~ 157 (164)
++||.+.+++.++....... . ....+...+...|+|++.|+|+|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~-------~---------------------------~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQE-------N---------------------------LTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCcccc-------C---------------------------cchhhhcCCccceEEEEEEEeCC
Confidence 99999999999988754320 0 01112335567899999999986
No 17
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.91 E-value=4.5e-23 Score=137.68 Aligned_cols=89 Identities=31% Similarity=0.542 Sum_probs=82.3
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG 83 (164)
|.|.|+|++|++|+..+ .+.+||||++++.+. ++|+++.++.||.|+|+|.|.+......+.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 78999999999999888 788999999999988 9999999999999999999999766778999999999888999999
Q ss_pred EEEEechhhhh
Q 031204 84 DAEFYITPFLE 94 (164)
Q Consensus 84 ~~~v~l~~l~~ 94 (164)
++.+++.++..
T Consensus 81 ~~~~~l~~~~~ 91 (119)
T cd08377 81 KVAIPLLSIKN 91 (119)
T ss_pred EEEEEHHHCCC
Confidence 99999988754
No 18
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.90 E-value=9.2e-23 Score=136.74 Aligned_cols=87 Identities=30% Similarity=0.543 Sum_probs=80.0
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEE
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD 84 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~ 84 (164)
|.|+|++|++|++.+ .|.+||||++.+++. ++|+++.++.||.|||.|.|.+....+.|.|+|||++.++++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 789999999999999 889999999999876 89999999999999999999997666789999999999989999999
Q ss_pred EEEechhhhh
Q 031204 85 AEFYITPFLE 94 (164)
Q Consensus 85 ~~v~l~~l~~ 94 (164)
+.++++.+..
T Consensus 82 ~~~~~~~~~~ 91 (121)
T cd04054 82 VSLTREVISA 91 (121)
T ss_pred EEEcHHHhcc
Confidence 9999887754
No 19
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=8e-23 Score=141.64 Aligned_cols=89 Identities=28% Similarity=0.421 Sum_probs=80.2
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCcee
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKM 82 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~~~l 82 (164)
.|.|+|++|++|++.+ .|.+||||++.++++ .+|++..+ +.||.|||+|.|.+.++. +.+.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 3899999999999998 889999999999999 99999977 699999999999997653 5699999999988889999
Q ss_pred EEEEEechhhhhh
Q 031204 83 GDAEFYITPFLEA 95 (164)
Q Consensus 83 G~~~v~l~~l~~~ 95 (164)
|++.+++.++..+
T Consensus 81 G~v~i~L~~l~~~ 93 (150)
T cd04019 81 GRAVIPLNDIERR 93 (150)
T ss_pred EEEEEEHHHCccc
Confidence 9999999988653
No 20
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.90 E-value=2.4e-22 Score=135.58 Aligned_cols=113 Identities=19% Similarity=0.387 Sum_probs=93.9
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCce
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~~~ 81 (164)
...|+|+|++|++|+.. +.+||||++.+++. .+|++. ++.||.|||+|.|.+..+. ..+.|.|||++..+++++
T Consensus 3 ~~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eeEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 45799999999999875 47899999999875 788874 6899999999999876554 469999999999999999
Q ss_pred eEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc------cceeeEEEEEEE
Q 031204 82 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN------VEVGEVKIQLEW 155 (164)
Q Consensus 82 lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~------~~~G~l~l~l~~ 155 (164)
||.+.++++++..+.. .+.|+.|.. ...|+|+|+++|
T Consensus 80 iG~v~i~l~~l~~~~~-------------------------------------~~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 80 IAEVTVQLSKLQNGQE-------------------------------------TDEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred EEEEEEEHhHccCCCc-------------------------------------ccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 9999999998766432 267777753 345999999999
Q ss_pred Ee
Q 031204 156 ID 157 (164)
Q Consensus 156 ~~ 157 (164)
.+
T Consensus 123 ~~ 124 (126)
T cd08400 123 SH 124 (126)
T ss_pred Ec
Confidence 75
No 21
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.90 E-value=2e-22 Score=140.85 Aligned_cols=114 Identities=25% Similarity=0.427 Sum_probs=96.7
Q ss_pred cEEEEEEEEEeEcCCCCC-------------------------------CCCCCcEEEEEECCE--EeeeeeeCCCCCeE
Q 031204 5 MGLLRVHVLRGVNLAVRD-------------------------------VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEW 51 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~-------------------------------~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w 51 (164)
-|+|.|+|.+|++|++++ .|.+||||++++++. .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 589999999999999865 245899999999976 79999999999999
Q ss_pred ecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCC
Q 031204 52 NEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDG 131 (164)
Q Consensus 52 ~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 131 (164)
||+|.|.+....+.|.|+|||++.+ .+++||++.++++++..+..
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~---------------------------------- 130 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEP---------------------------------- 130 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCC----------------------------------
Confidence 9999999877777899999999988 56899999999999876432
Q ss_pred eEEEEEeEEeccc------ceeeEEEEEEEE
Q 031204 132 KLVQNLFLRLRNV------EVGEVKIQLEWI 156 (164)
Q Consensus 132 ~~~~~~~~~l~~~------~~G~l~l~l~~~ 156 (164)
.+.|++|.+. ..|+|+|+++|.
T Consensus 131 ---~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 131 ---VEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ---cceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 2778887542 357999999984
No 22
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.90 E-value=3e-22 Score=136.17 Aligned_cols=115 Identities=23% Similarity=0.406 Sum_probs=99.5
Q ss_pred cEEEEEEEEEeEcCCCCCC-----------CCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEE
Q 031204 5 MGLLRVHVLRGVNLAVRDV-----------VSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY 71 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~-----------~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~ 71 (164)
.|.|+|+|++|++|+..+. +.+||||++.++++ .+|+++.++.+|.|||+|.|.+. ..+.|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 5899999999999988773 47899999999986 79999999999999999999996 4567999999
Q ss_pred eCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEE
Q 031204 72 DKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKI 151 (164)
Q Consensus 72 d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l 151 (164)
|++.++.+++||++.+++.++...... ..+.|+.|. +.|+|+|
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~-----------------------------------~~~~w~~L~--~~G~l~l 124 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSG-----------------------------------SFDLWVDLE--PQGKLHV 124 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCC-----------------------------------cccEEEEcc--CCcEEEE
Confidence 999888899999999999988763110 138999998 7899999
Q ss_pred EEEEEe
Q 031204 152 QLEWID 157 (164)
Q Consensus 152 ~l~~~~ 157 (164)
+++|..
T Consensus 125 ~~~~~~ 130 (132)
T cd04014 125 KIELKG 130 (132)
T ss_pred EEEEec
Confidence 999864
No 23
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.89 E-value=5e-22 Score=134.07 Aligned_cols=88 Identities=26% Similarity=0.456 Sum_probs=81.1
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~ 81 (164)
+..+|+|+|++|++|+..+ ++.+||||++.++++ ++|++++++.+|.|||.|.|.+..+...|.|+|||++.. .|++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence 4678999999999999888 789999999999999 999999999999999999999887777899999999987 6899
Q ss_pred eEEEEEechhh
Q 031204 82 MGDAEFYITPF 92 (164)
Q Consensus 82 lG~~~v~l~~l 92 (164)
||.+.+++.++
T Consensus 80 lG~~~~~l~~~ 90 (126)
T cd04046 80 LGQATLSADPN 90 (126)
T ss_pred eEEEEEecccC
Confidence 99999999764
No 24
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.89 E-value=6.3e-22 Score=132.96 Aligned_cols=89 Identities=36% Similarity=0.580 Sum_probs=81.2
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeE
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG 83 (164)
+|+|+|++|++|+..+ .+.+||||++++++. ++|+++.++.||.|||+|.|.+... ...|.|+|||++..+++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 5899999999999988 778999999999988 9999999999999999999999765 456999999999998999999
Q ss_pred EEEEechhhhhh
Q 031204 84 DAEFYITPFLEA 95 (164)
Q Consensus 84 ~~~v~l~~l~~~ 95 (164)
++.++++++...
T Consensus 81 ~~~~~l~~l~~~ 92 (123)
T cd04025 81 KVVFSIQTLQQA 92 (123)
T ss_pred EEEEEHHHcccC
Confidence 999999988654
No 25
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.89 E-value=5.1e-22 Score=130.47 Aligned_cols=92 Identities=25% Similarity=0.509 Sum_probs=82.2
Q ss_pred EEEEEEEEEeEcCCCCC-C----CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCCC
Q 031204 6 GLLRVHVLRGVNLAVRD-V----VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTFS 77 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~----~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~--~~l~i~v~d~~~~~ 77 (164)
|+|.|+|++|++|++.+ . +.+||||++.+++. ++|++++++.||+|||.|.|.+.+.. ..|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999876 2 35899999999888 99999999999999999999986533 46999999999999
Q ss_pred CCceeEEEEEechhhhhhhc
Q 031204 78 LDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l~~~~~ 97 (164)
+|++||++.++|+++..+..
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999988654
No 26
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.89 E-value=7.1e-22 Score=134.37 Aligned_cols=119 Identities=26% Similarity=0.484 Sum_probs=97.0
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--------EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--------LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS 77 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--------~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~ 77 (164)
.|+|+|++|++|+..+ .+.+||||++.+.+. ++|+++.++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 4899999999999988 789999999998631 7899999999999999999999765667999999999998
Q ss_pred CCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc-----cceeeEEEE
Q 031204 78 LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN-----VEVGEVKIQ 152 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~-----~~~G~l~l~ 152 (164)
++++||++.+++.++........ ....+.|++|+. ...|+|+|+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~G~l~~~ 129 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNE-------------------------------RRYTFKDYLLRPRSSKSRVKGHLRLY 129 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCcccc-------------------------------ccccchheeeeecCCCCcceeEEEEE
Confidence 99999999999999876432100 011256666653 358999999
Q ss_pred EEEE
Q 031204 153 LEWI 156 (164)
Q Consensus 153 l~~~ 156 (164)
+.|+
T Consensus 130 ~~~~ 133 (133)
T cd04033 130 MAYL 133 (133)
T ss_pred EeeC
Confidence 9884
No 27
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.89 E-value=1.4e-21 Score=131.97 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=98.5
Q ss_pred EEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCCceeEEEEE
Q 031204 12 VLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLDDKMGDAEF 87 (164)
Q Consensus 12 v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~~~~~lG~~~v 87 (164)
|++|++|+. ..+.+||||++.+.+. ++|++++++.||.|||+|.|.+..+ .+.|.|+|||++..+++++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 689999998 5678999999999988 9999999999999999999999653 4679999999999889999999999
Q ss_pred echhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEeccc----ceeeEEEEEEEEecCCCCC
Q 031204 88 YITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWIDIPGSRG 163 (164)
Q Consensus 88 ~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~~~~~~~ 163 (164)
+++++..+.. .+.|++|.+. ..|+|++.++|.|++...|
T Consensus 81 ~l~~l~~~~~-------------------------------------~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 81 SLQDLVSEGL-------------------------------------LEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred EhhHcccCCc-------------------------------------eEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 9998876432 2667777432 3589999999999998776
Q ss_pred C
Q 031204 164 L 164 (164)
Q Consensus 164 ~ 164 (164)
+
T Consensus 124 ~ 124 (127)
T cd08373 124 G 124 (127)
T ss_pred C
Confidence 3
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=5.2e-22 Score=133.05 Aligned_cols=83 Identities=30% Similarity=0.514 Sum_probs=76.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeEEE
Q 031204 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDA 85 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG~~ 85 (164)
|+|+|++|++|+.. .+||||++.+++. .+|++++++.||.|||+|.|.+..+ ...|.|+|||++.. ++++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 88999999999876 7899999999988 9999999999999999999998764 45699999999987 88999999
Q ss_pred EEechhhhh
Q 031204 86 EFYITPFLE 94 (164)
Q Consensus 86 ~v~l~~l~~ 94 (164)
.++++++..
T Consensus 78 ~i~l~~l~~ 86 (121)
T cd08378 78 CFDLSEVPT 86 (121)
T ss_pred EEEhHhCcC
Confidence 999998865
No 29
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.88 E-value=1.1e-21 Score=130.89 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=78.0
Q ss_pred EEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031204 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD 74 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-------~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~ 74 (164)
.|+|+|++|++|+..+.|.+||||++++.+ + ++|+++.++.||+|||+|.|.+... ...|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 489999999999987788999999999832 2 6899999999999999999999743 245999999999
Q ss_pred CCCCCceeEEEEEechhhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
..+++++||++.+++.++..+.
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~ 102 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAG 102 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCC
Confidence 8878999999999999988654
No 30
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=9.3e-22 Score=135.24 Aligned_cols=91 Identities=22% Similarity=0.387 Sum_probs=79.9
Q ss_pred cEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEE-eCCC
Q 031204 5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY-DKDT 75 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~-d~~~ 75 (164)
.|.|.|+|++|+||++.+ .+.+||||++++.. . .+|++++++.||+|||+|.|.+...+..|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 478999999999999864 67899999999953 2 8999999999999999999999855677999999 5788
Q ss_pred CCCCceeEEEEEechhhhhh
Q 031204 76 FSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 76 ~~~~~~lG~~~v~l~~l~~~ 95 (164)
++++++||++.|+|+++..+
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~ 127 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLS 127 (146)
T ss_pred CCCCceEEEEEEEcccccCC
Confidence 88899999999999987543
No 31
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.88 E-value=7.5e-22 Score=132.45 Aligned_cols=91 Identities=25% Similarity=0.335 Sum_probs=80.4
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD 74 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~ 74 (164)
.+.|.|+|++|++|++.+.+.+||||++++.+ . ++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 57899999999999988877899999999963 2 899999999999999999999732 2456999999999
Q ss_pred CCCCCceeEEEEEechhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~ 95 (164)
.++++++||++.+++.++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 998999999999999988754
No 32
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.88 E-value=6.5e-22 Score=130.72 Aligned_cols=90 Identities=18% Similarity=0.294 Sum_probs=78.7
Q ss_pred ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC----E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCC
Q 031204 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK----Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDT 75 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~----~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~ 75 (164)
..|.|+|+|++|++|+ . .+.+||||++++.. . .+|++.++|.||.|||+|.|.+.. ++..|.|+|||+|.
T Consensus 12 ~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr 89 (118)
T cd08677 12 QKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR 89 (118)
T ss_pred cCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence 4689999999999998 3 35699999999964 2 899999999999999999999864 24569999999999
Q ss_pred CCCCceeEEEEEechhhhhh
Q 031204 76 FSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 76 ~~~~~~lG~~~v~l~~l~~~ 95 (164)
++++++||++.++++++...
T Consensus 90 fs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 90 FSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred CCCCceEEEEEEccccccCC
Confidence 99999999999999876443
No 33
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.88 E-value=5.2e-21 Score=128.98 Aligned_cols=114 Identities=26% Similarity=0.435 Sum_probs=95.9
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCc
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDD 80 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~ 80 (164)
.|+|+|++|++|+..+ .+.+||||++.+.+ . ++|+++.++.||.|||+|.|.+..+ ...|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999988 78999999999863 3 8999999999999999999999764 456999999999988999
Q ss_pred eeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEE
Q 031204 81 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 156 (164)
Q Consensus 81 ~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~ 156 (164)
+||++.+++.++...... ...+.|+.|. ++|+|++++.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~----------------------------------~~~~~w~~l~--~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDG----------------------------------LPREIWLDLD--TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCC----------------------------------CCceEEEEcC--CCCeEEEEEEEe
Confidence 999999999876543200 1237899997 589999998764
No 34
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.87 E-value=3.9e-21 Score=125.72 Aligned_cols=85 Identities=26% Similarity=0.477 Sum_probs=78.1
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeEE
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGD 84 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG~ 84 (164)
|.|+|++|++|+..+ .+.+||||+++++++ ++|+++.++.||.|||+|.|.+..+ .+.|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 789999999999888 789999999999999 9999999999999999999999875 4569999999886 789999
Q ss_pred EEEechhhhhh
Q 031204 85 AEFYITPFLEA 95 (164)
Q Consensus 85 ~~v~l~~l~~~ 95 (164)
+.+++.++...
T Consensus 79 ~~i~l~~l~~~ 89 (105)
T cd04050 79 LTLPLSELLKE 89 (105)
T ss_pred EEEEHHHhhcc
Confidence 99999998764
No 35
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.87 E-value=2.6e-21 Score=130.32 Aligned_cols=94 Identities=33% Similarity=0.406 Sum_probs=82.1
Q ss_pred cccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC----E--EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031204 3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK----Q--LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY 71 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~----~--~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~ 71 (164)
...|.|.|+|++|+||++.+ .+.+||||++++.+ . ++|++++++.||.|||+|.|.+... +..|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 46789999999999999876 47899999999852 2 8999999999999999999998642 456999999
Q ss_pred eCCCCCCCceeEEEEEechhhhhhh
Q 031204 72 DKDTFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 72 d~~~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
|++..+++++||++.+++.++....
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~ 116 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDS 116 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccC
Confidence 9999999999999999999886653
No 36
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.87 E-value=5.1e-21 Score=126.40 Aligned_cols=99 Identities=21% Similarity=0.404 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCceeEEEEEechhhhhhhccc
Q 031204 23 VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR 99 (164)
Q Consensus 23 ~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~ 99 (164)
+|.+||||++.++++ ++|+++.++.||.|||.|.|.+.++. ..|.|.|||++.+ ++++||.+.++|+++.....
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence 688999999999886 89999999999999999999997654 5699999999998 99999999999999865421
Q ss_pred ccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEec
Q 031204 100 LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI 158 (164)
Q Consensus 100 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~ 158 (164)
..+.|++|.+.+.|+|+++++|.|+
T Consensus 87 ----------------------------------~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 87 ----------------------------------VGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred ----------------------------------ccceeEECCCCCCCEEEEEEEEecC
Confidence 1278999998889999999999985
No 37
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.87 E-value=6.8e-21 Score=128.69 Aligned_cols=88 Identities=30% Similarity=0.539 Sum_probs=78.4
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC-------
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF------- 76 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~------- 76 (164)
..|+|+|++|++|+..+ .+.+||||++++++. ++|+++.++.+|.|||+|.|.+..+...|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 36899999999999988 788999999999888 999999999999999999999876666799999999852
Q ss_pred ----CCCceeEEEEEechhhh
Q 031204 77 ----SLDDKMGDAEFYITPFL 93 (164)
Q Consensus 77 ----~~~~~lG~~~v~l~~l~ 93 (164)
+.+++||.+.+++.++.
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred eccccCCCcceEEEEEhHHcc
Confidence 46899999999998763
No 38
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.87 E-value=8.5e-21 Score=126.62 Aligned_cols=87 Identities=22% Similarity=0.365 Sum_probs=78.0
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG 83 (164)
++.|.|+|++|++|+..+ ..||||.+.++++ .+|++.++ .||.|||+|.|.+.+.+..|.|+|||++.+ +|++||
T Consensus 1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 478999999999997654 5689999999998 89999977 599999999999987777799999999976 999999
Q ss_pred EEEEechhhhhh
Q 031204 84 DAEFYITPFLEA 95 (164)
Q Consensus 84 ~~~v~l~~l~~~ 95 (164)
++.++|.++..+
T Consensus 77 ~v~i~L~~v~~~ 88 (127)
T cd08394 77 TVWIPLSTIRQS 88 (127)
T ss_pred EEEEEhHHcccC
Confidence 999999998765
No 39
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.86 E-value=4.4e-21 Score=129.03 Aligned_cols=94 Identities=26% Similarity=0.485 Sum_probs=82.9
Q ss_pred cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031204 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD 74 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~ 74 (164)
...|.|.|+|++|++|+..+ .+.+||||++++.. . ++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 45689999999999999988 78899999999942 3 9999999999999999999998643 457999999999
Q ss_pred CCCCCceeEEEEEechhhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
.++++++||++.++++++..+.
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~ 114 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSE 114 (124)
T ss_pred CCCCCceeEEEEEecccccCCC
Confidence 9989999999999999887543
No 40
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.86 E-value=4.9e-21 Score=126.48 Aligned_cols=90 Identities=30% Similarity=0.589 Sum_probs=80.7
Q ss_pred EEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCC
Q 031204 6 GLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDT 75 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~ 75 (164)
|+|+|+|++|++|+..+ . +.+||||++++.. . ++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 78999999999999988 6 8999999999853 3 8999999999999999999988643 3569999999999
Q ss_pred CCCCceeEEEEEechhhhhh
Q 031204 76 FSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 76 ~~~~~~lG~~~v~l~~l~~~ 95 (164)
++.|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 98999999999999998743
No 41
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.86 E-value=1.2e-20 Score=126.75 Aligned_cols=87 Identities=30% Similarity=0.510 Sum_probs=78.6
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEEC-CE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC--Ccee
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMG-KQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL--DDKM 82 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~--~~~l 82 (164)
|+|+|++|++|+..+ ++.+||||++.++ .+ ++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++ +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 789999999999888 7899999999997 45 999999999999999999999964 6779999999998865 5799
Q ss_pred EEEEEechhhhhh
Q 031204 83 GDAEFYITPFLEA 95 (164)
Q Consensus 83 G~~~v~l~~l~~~ 95 (164)
|++.+++.++...
T Consensus 81 G~~~i~l~~l~~~ 93 (123)
T cd08382 81 GCVRIRANAVLPL 93 (123)
T ss_pred eEEEEEHHHcccc
Confidence 9999999998754
No 42
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.86 E-value=2.1e-20 Score=127.59 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=94.2
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC----------CCcEEEEEEeCC
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS----------NLPIKLTVYDKD 74 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~----------~~~l~i~v~d~~ 74 (164)
+|+|+|++|++|+..+ .+.+||||++.+++. ++|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999988 889999999999988 9999999999999999999985321 135899999999
Q ss_pred CCCCCceeEEEEEe-chhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc--cceeeEEE
Q 031204 75 TFSLDDKMGDAEFY-ITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGEVKI 151 (164)
Q Consensus 75 ~~~~~~~lG~~~v~-l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~l~l 151 (164)
..++|++||++.+. +..+.... .+ .....|++|.. ...|+|.|
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~--------~~--------------------------~~~~~W~~L~~~~~~~Geil~ 127 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEE--------DF--------------------------PPKLQWFPIYKGGQSAGELLA 127 (135)
T ss_pred CCCCCccceEEEeeeeeecccCC--------CC--------------------------CCCceEEEeecCCCchhheeE
Confidence 99899999999873 32222110 00 02367888763 35799999
Q ss_pred EEEEEecC
Q 031204 152 QLEWIDIP 159 (164)
Q Consensus 152 ~l~~~~~~ 159 (164)
.++++++.
T Consensus 128 ~~~~~~~~ 135 (135)
T cd04017 128 AFELIEVT 135 (135)
T ss_pred EeEEEEeC
Confidence 99998863
No 43
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.86 E-value=1e-20 Score=127.20 Aligned_cols=91 Identities=34% Similarity=0.564 Sum_probs=82.6
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeC-CCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCCC
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKN-NVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFSL 78 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~-t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~~~~ 78 (164)
|.|.|+|++|++|+..+ .+.+||||++.+.++ ++|++..+ +.||.|||+|.|.+..+ ...|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 78999999999999888 789999999999988 89998885 89999999999999866 4569999999999889
Q ss_pred CceeEEEEEechhhhhhh
Q 031204 79 DDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 79 ~~~lG~~~v~l~~l~~~~ 96 (164)
+++||++.+++.++..+.
T Consensus 81 d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG 98 (124)
T ss_pred CCeEEEEEEEhHHhhhCC
Confidence 999999999999998754
No 44
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.86 E-value=2.2e-20 Score=124.99 Aligned_cols=90 Identities=28% Similarity=0.516 Sum_probs=83.6
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCcee
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM 82 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~l 82 (164)
|.|.|+|++|++|+..+ .+.+||||++.+.+. ++|+++.++.||.|||.|.|.+..+.+.|.|+|||++..+++++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 68999999999999988 789999999999875 999999999999999999999987777899999999999899999
Q ss_pred EEEEEechhhhhh
Q 031204 83 GDAEFYITPFLEA 95 (164)
Q Consensus 83 G~~~v~l~~l~~~ 95 (164)
|++.+++.++..+
T Consensus 81 G~~~~~l~~l~~~ 93 (120)
T cd04045 81 GSVEINVSDLIKK 93 (120)
T ss_pred eEEEEeHHHhhCC
Confidence 9999999998875
No 45
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.86 E-value=8.9e-21 Score=125.04 Aligned_cols=88 Identities=34% Similarity=0.621 Sum_probs=80.0
Q ss_pred EEEEEEEeEcCCCCC--CCCCCcEEEEEECCE-EeeeeeeCCCCCeE-ecEEEEEEeCC---CCcEEEEEEeCCCCCCCc
Q 031204 8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEW-NEDLTLSISDS---NLPIKLTVYDKDTFSLDD 80 (164)
Q Consensus 8 L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w-~e~~~f~~~~~---~~~l~i~v~d~~~~~~~~ 80 (164)
|.|+|++|++|+..+ .+.+||||++++++. ++|+++.++.||.| ||+|.|.+... .+.|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 689999999999877 578999999999988 99999999999999 99999999653 357999999999998999
Q ss_pred eeEEEEEechhhhhh
Q 031204 81 KMGDAEFYITPFLEA 95 (164)
Q Consensus 81 ~lG~~~v~l~~l~~~ 95 (164)
+||++.+++.++...
T Consensus 81 ~iG~~~~~l~~l~~~ 95 (110)
T cd08688 81 AIGKVYIDLNPLLLK 95 (110)
T ss_pred ceEEEEEeHHHhccc
Confidence 999999999998773
No 46
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.86 E-value=8.2e-21 Score=127.67 Aligned_cols=93 Identities=28% Similarity=0.433 Sum_probs=81.7
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT 75 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~ 75 (164)
..+.|.|+|++|+||+..+ .+.+||||++.+.+ . ++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 4679999999999999888 78899999999863 2 8999999999999999999998642 4569999999999
Q ss_pred CCCCceeEEEEEechhhhhhh
Q 031204 76 FSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 76 ~~~~~~lG~~~v~l~~l~~~~ 96 (164)
++++++||++.++++++..+.
T Consensus 94 ~~~~~~lG~~~i~l~~~~~~~ 114 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDLGH 114 (124)
T ss_pred CCCCceeEEEEEecCcccCCC
Confidence 989999999999999876543
No 47
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.85 E-value=5.9e-21 Score=128.64 Aligned_cols=92 Identities=28% Similarity=0.418 Sum_probs=80.8
Q ss_pred ccEEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204 4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 72 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d 72 (164)
..+.|.|+|++|+||++.+ . +.+||||++++.+ . ++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 4578999999999999988 4 7899999999952 2 8999999999999999999998632 3569999999
Q ss_pred CCCCCCCceeEEEEEechhhhhh
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
++.++++++||++.++|.++...
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccC
Confidence 99998999999999999988554
No 48
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.85 E-value=1.9e-20 Score=129.32 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=77.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeC---------------C-CC
Q 031204 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISD---------------S-NL 64 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~---------------~-~~ 64 (164)
.|.|+|++|++|+. ..|.+||||++.+.+ . .+|+++.++.||.|||+|.|.+.. . ..
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 48999999999998 568899999999975 4 899999999999999999999941 1 24
Q ss_pred cEEEEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204 65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
.|.|.|||++..++++|||++.|++..+..+
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 5899999999888999999999999988765
No 49
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.85 E-value=1.8e-20 Score=126.13 Aligned_cols=92 Identities=28% Similarity=0.384 Sum_probs=81.0
Q ss_pred cccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC--CCCcEEEEEEeCCCCCCC
Q 031204 3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD--SNLPIKLTVYDKDTFSLD 79 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~--~~~~l~i~v~d~~~~~~~ 79 (164)
..+|+|+|+|++|++|+....+.+|||++++++++ ++|++++++.||.|||+|.|.... ....|.|+|||++.+++|
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 46799999999999998433778999999999988 999999999999999999997533 356799999999999999
Q ss_pred ceeEEEEEechhhhh
Q 031204 80 DKMGDAEFYITPFLE 94 (164)
Q Consensus 80 ~~lG~~~v~l~~l~~ 94 (164)
++||++.+++.....
T Consensus 105 d~IG~~~i~l~~~~~ 119 (127)
T cd04032 105 DLLGTCSVVPEAGVH 119 (127)
T ss_pred CeeEEEEEEecCCce
Confidence 999999999986654
No 50
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.84 E-value=1.1e-20 Score=126.31 Aligned_cols=92 Identities=22% Similarity=0.347 Sum_probs=79.3
Q ss_pred ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC----E--EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCC
Q 031204 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK----Q--LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDT 75 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~----~--~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~ 75 (164)
..+.|.|+|++|+||++++.+.+||||++++.+ . ++|++.+++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 357899999999999988877899999999974 2 7899999999999999999998643 3458999999988
Q ss_pred CC-CCceeEEEEEechhhhhh
Q 031204 76 FS-LDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 76 ~~-~~~~lG~~~v~l~~l~~~ 95 (164)
.+ ++++||.+.+++.++..+
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~ 110 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQ 110 (119)
T ss_pred CcCCCEEEEEEEecHHHhccC
Confidence 75 478999999999998743
No 51
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.84 E-value=2e-20 Score=126.39 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=80.8
Q ss_pred ccEEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204 4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 72 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d 72 (164)
..+.|.|+|++|+||++.+ . +.+||||++++.+ . .+|++++++.||+|||+|.|.+... +..|.+.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 4578999999999999988 4 8999999999863 2 7999999999999999999998643 4579999999
Q ss_pred CCCCCCCceeEEEEEechhhhhh
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
.+.++++++||++.|++.++...
T Consensus 93 ~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 93 SRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred CCCCcCcceEEEEEEEcCCcccC
Confidence 99998999999999999887543
No 52
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=3.6e-20 Score=124.59 Aligned_cols=88 Identities=28% Similarity=0.447 Sum_probs=78.6
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEe
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYD 72 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d 72 (164)
..++|.|+|++|++|+..+ .+.+||||++.+.+ . ++|++++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4588999999999999988 78899999999974 3 899999999999999999998643 24569999999
Q ss_pred CCCCCCCceeEEEEEechh
Q 031204 73 KDTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~ 91 (164)
++..+.+++||++.+++.+
T Consensus 94 ~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 94 YDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCCCCcEeeEEEEeccc
Confidence 9998899999999999987
No 53
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.84 E-value=1.8e-19 Score=123.71 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=75.9
Q ss_pred ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC-CC---
Q 031204 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT-FS--- 77 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~-~~--- 77 (164)
....|.|.|++|++|++++ +|||.+.+++. .||+++.++.||.|+|+|.|....+-..+.|.||..+. .+
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 4567999999999998764 89999999998 79999999999999999999876666679999987543 21
Q ss_pred CCceeEEEEEechhhhhhh
Q 031204 78 LDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l~~~~ 96 (164)
++++||.+.|++.++..+.
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~ 103 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQ 103 (146)
T ss_pred CCcEEEEEEEEHHHhcCCC
Confidence 5789999999999988643
No 54
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.83 E-value=5.3e-20 Score=123.91 Aligned_cols=90 Identities=20% Similarity=0.386 Sum_probs=81.0
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-E-Eeeeeee-CCCCCeEecEEEEEEeCC-----CCcEEEEEEeCCCCC
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-Q-LKTRVVK-NNVNPEWNEDLTLSISDS-----NLPIKLTVYDKDTFS 77 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~-~~T~~~~-~t~~P~w~e~~~f~~~~~-----~~~l~i~v~d~~~~~ 77 (164)
+|+|+|++|++|+..+ .+.+||||++.+++ + .+|++.. ++.||.|||.|.|.+..+ ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999888 78999999999998 6 9999976 489999999999999766 467999999999988
Q ss_pred CCceeEEEEEechhhhhhh
Q 031204 78 LDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l~~~~ 96 (164)
.+++||++.+++.++..+.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~ 99 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGA 99 (125)
T ss_pred CCCcEEEEEEEHHHhhccc
Confidence 9999999999999998764
No 55
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.83 E-value=6.6e-20 Score=123.69 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=80.6
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~ 73 (164)
..+.|+|+|++|+||+..+ .+.+||||++.+.+ . ++|++++++.||.|||+|.|.+... ...|.|.|||.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 4588999999999999998 78999999999863 3 9999999999999999999998642 35699999999
Q ss_pred CCC--CCCceeEEEEEechhhhhh
Q 031204 74 DTF--SLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 74 ~~~--~~~~~lG~~~v~l~~l~~~ 95 (164)
+.+ +++++||++.+++.++..+
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~ 117 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLS 117 (127)
T ss_pred CcccCCCCceEEEEEEeccccccc
Confidence 875 6899999999999998554
No 56
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.83 E-value=3.6e-20 Score=129.98 Aligned_cols=92 Identities=29% Similarity=0.342 Sum_probs=80.5
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEe
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYD 72 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d 72 (164)
..|+|.|+|++|+||+..+ .+.+||||++++.. . ++|++++++.||.|||+|.|.+... +..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 5689999999999999988 88999999998842 3 9999999999999999999986422 3469999999
Q ss_pred CCCCCCCceeEEEEEechhhhhh
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
++.++++++||++.+++.++...
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccC
Confidence 99998899999999999887643
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.83 E-value=5e-20 Score=123.68 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=81.3
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEe
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYD 72 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d 72 (164)
..+.|.|+|++|+||++.+ .+.+||||++++.+ . ++|++.+++.||+|||+|.|.+.. .+..|.|+||+
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 4578999999999999887 77899999999862 3 899999999999999999999864 34679999999
Q ss_pred CCCCCCCceeEEEEEechhhhhh
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
++..+++++||.+.++++++...
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred CCCCCceeEEEEEEEEhhhccCC
Confidence 99998999999999999988543
No 58
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=1.5e-19 Score=125.14 Aligned_cols=90 Identities=29% Similarity=0.381 Sum_probs=80.2
Q ss_pred EEEEEEEEeEcCCCCC-C--------------CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEE
Q 031204 7 LLRVHVLRGVNLAVRD-V--------------VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKL 68 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~--------------~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i 68 (164)
.|.|+|++|++|+.++ . +.+||||++.++++ .+|++++++.||+|||+|.|.+..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4789999999999987 3 26899999999999 9999999999999999999997533 457999
Q ss_pred EEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204 69 TVYDKDTFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 69 ~v~d~~~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
+|||++..++|++||++.+++.++....
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999887643
No 59
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.83 E-value=1.7e-19 Score=119.12 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=78.7
Q ss_pred EEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCC-----CCcEEEEEEeCCCCCCC
Q 031204 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLTVYDKDTFSLD 79 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~l~i~v~d~~~~~~~ 79 (164)
-.|+|+|++|++|+ .+.+||||++.++++ ++|+++.++.||.|||+|.|.+..+ +..|.|+|||++.++++
T Consensus 4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 46899999999998 478999999999999 9999999999999999999998643 24699999999998889
Q ss_pred ceeEEEEEechhhhhhh
Q 031204 80 DKMGDAEFYITPFLEAL 96 (164)
Q Consensus 80 ~~lG~~~v~l~~l~~~~ 96 (164)
++||++.++++++..+.
T Consensus 81 ~~iG~~~i~l~~v~~~~ 97 (111)
T cd04011 81 TLIGSFKLDVGTVYDQP 97 (111)
T ss_pred CccEEEEECCccccCCC
Confidence 99999999999886643
No 60
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.83 E-value=2.4e-19 Score=121.25 Aligned_cols=92 Identities=27% Similarity=0.396 Sum_probs=79.0
Q ss_pred ccEEEEEEEEEeEcCCCCC-C-CCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEE-EeC---CCCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~-~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~-~~~---~~~~l~i~v~d~ 73 (164)
..+.|+|+|++|+||+..+ . +.+||||++.+.+ + .+|++++++.||.|||+|.|. +.. ....|.|+|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 4578999999999999988 4 8899999999863 2 799999999999999999994 432 234699999999
Q ss_pred CCCCCCceeEEEEEechhhhhh
Q 031204 74 DTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
+.++++++||++.++++++...
T Consensus 94 d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 94 DRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CCCCCCceeEEEEEeccccCCC
Confidence 9999999999999999988654
No 61
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.83 E-value=8.1e-19 Score=118.22 Aligned_cols=88 Identities=27% Similarity=0.490 Sum_probs=78.3
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeE
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG 83 (164)
.|.|+|.+|+ |...+ .+.+||||+++++++ ++|+++.++.+|.|||+|.|.+. ..+.|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6899999998 54444 778999999999876 99999999999999999999986 4567999999999998999999
Q ss_pred EEEEechhhhhhh
Q 031204 84 DAEFYITPFLEAL 96 (164)
Q Consensus 84 ~~~v~l~~l~~~~ 96 (164)
++.+++.++....
T Consensus 81 ~~~i~l~~l~~~~ 93 (125)
T cd04021 81 EASLDLSDILKNH 93 (125)
T ss_pred EEEEEHHHhHhhc
Confidence 9999999988753
No 62
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=1.8e-19 Score=119.59 Aligned_cols=89 Identities=30% Similarity=0.491 Sum_probs=79.7
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeE
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG 83 (164)
|+|+|++|++|+..+ .+.+||||++.+.+. ++|+++.++.+|.|||+|.|.+... .+.+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999888 778999999999765 8999999999999999999999754 567999999999988999999
Q ss_pred EEEEechhhhhhh
Q 031204 84 DAEFYITPFLEAL 96 (164)
Q Consensus 84 ~~~v~l~~l~~~~ 96 (164)
++.+++.++..+.
T Consensus 81 ~~~~~l~~l~~~~ 93 (115)
T cd04040 81 SAYIDLSDLEPEE 93 (115)
T ss_pred EEEEEHHHcCCCC
Confidence 9999999987643
No 63
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.82 E-value=1.6e-19 Score=121.11 Aligned_cols=95 Identities=25% Similarity=0.392 Sum_probs=82.5
Q ss_pred cccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204 3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 73 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~ 73 (164)
...+.|.|+|++|++|+..+ .+.+||||++++.+ . .+|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 45688999999999999886 67899999999853 3 8999999999999999999998643 35699999999
Q ss_pred CCCCCCceeEEEEEechhhhhhhc
Q 031204 74 DTFSLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~l~~~~~ 97 (164)
+..+++++||++.++++++.....
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~ 114 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKG 114 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCC
Confidence 998889999999999998877543
No 64
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.82 E-value=1.1e-19 Score=121.98 Aligned_cols=93 Identities=33% Similarity=0.453 Sum_probs=80.9
Q ss_pred cccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031204 3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY 71 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~ 71 (164)
...+.|.|+|++|+||+..+ .+.+||||++++.+ . ++|++++++.+|.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45689999999999999877 56899999999842 3 8999999999999999999998642 456999999
Q ss_pred eCCCCCCCceeEEEEEechhhhhh
Q 031204 72 DKDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 72 d~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
|++.++++++||++.++++++..+
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLD 114 (123)
T ss_pred eCCCCcCCceeeEEEEeccccccc
Confidence 999998999999999999988543
No 65
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.82 E-value=1.9e-19 Score=121.10 Aligned_cols=93 Identities=30% Similarity=0.470 Sum_probs=80.6
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CE-EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQ-LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD 74 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~---~~-~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~ 74 (164)
..+.|.|+|++|++|+..+ .+.+||||++.+. .. .+|++++++.||.|||+|.|.+.. ....|.++|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 4678999999999999888 7889999999994 23 999999999999999999998532 2346999999999
Q ss_pred CCCCCceeEEEEEechhhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
..+++++||++.+++.++....
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~ 115 (125)
T cd08386 94 RFSRNDPIGEVSLPLNKVDLTE 115 (125)
T ss_pred CCcCCcEeeEEEEecccccCCC
Confidence 9989999999999999887543
No 66
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.82 E-value=4.1e-19 Score=118.06 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=66.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCCcee
Q 031204 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLDDKM 82 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~~~~~l 82 (164)
|.|+|++|++|+.. +.+||||.+++++. ++|++..+ .+|.|||+|.|.+... ...|.+.+||.+....+..+
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999976 78999999999986 89999999 9999999999999753 34588899998877666777
Q ss_pred EEEEEec
Q 031204 83 GDAEFYI 89 (164)
Q Consensus 83 G~~~v~l 89 (164)
|.+.+..
T Consensus 79 g~v~l~~ 85 (117)
T cd08383 79 GKVALSK 85 (117)
T ss_pred EEEEecC
Confidence 7765544
No 67
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.82 E-value=2.7e-19 Score=124.04 Aligned_cols=88 Identities=28% Similarity=0.471 Sum_probs=78.6
Q ss_pred CcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----------------------------E-EeeeeeeCCCCCe
Q 031204 2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----------------------------Q-LKTRVVKNNVNPE 50 (164)
Q Consensus 2 ~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----------------------------~-~~T~~~~~t~~P~ 50 (164)
+.+.+.|.|+|++|++|++.+ .|.+||||++.+.+ . ++|+++.++.||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 357899999999999999998 88999999999852 2 6899999999999
Q ss_pred EecEEEEEEeCC-CCcEEEEEEeCCCCCCCceeEEEEEechhhh
Q 031204 51 WNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDAEFYITPFL 93 (164)
Q Consensus 51 w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~ 93 (164)
|||+|.|.+... ...|.|+|||++ +++||++.++++++.
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 999999999754 467999999997 889999999999887
No 68
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.81 E-value=2.9e-19 Score=120.23 Aligned_cols=91 Identities=22% Similarity=0.336 Sum_probs=78.4
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEE-EeC---CCCcEEEEEEeCC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDKD 74 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~-~~~---~~~~l~i~v~d~~ 74 (164)
..+.|.|+|++|+||++.+ .+..||||++.+.+ + .+|++.++ .||+|||+|.|. +.. .+..|.|+|||++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 4578999999999999988 77889999988753 2 89999887 999999999998 543 2456999999999
Q ss_pred CCCCCceeEEEEEechhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~ 95 (164)
.++++++||++.++|+++..+
T Consensus 93 ~~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 93 RMRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred CcccCceEEEEEEeccccCCC
Confidence 998999999999999988554
No 69
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.81 E-value=2.5e-19 Score=121.92 Aligned_cols=92 Identities=27% Similarity=0.321 Sum_probs=81.3
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-------CE-EeeeeeeCCCCCeEecEEEEEEeCC-----CCcEEEE
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-------KQ-LKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLT 69 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~-------~~-~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~l~i~ 69 (164)
..+.|+|+|++|++|+..+ .+.+||||++++. .. ++|++++++.||.|||+|.|.+... ...|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 4578999999999999888 7899999999986 23 9999999999999999999998642 3569999
Q ss_pred EEeCCCCCCCceeEEEEEechhhhhh
Q 031204 70 VYDKDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 70 v~d~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
|||++.++++++||++.++++++..-
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999998899999999999998753
No 70
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=162.40 Aligned_cols=118 Identities=22% Similarity=0.432 Sum_probs=104.0
Q ss_pred CCcccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCC
Q 031204 1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTF 76 (164)
Q Consensus 1 ~~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~--~~l~i~v~d~~~~ 76 (164)
|+...|.|.|+|++|.||. .+++.+||||++.++++ .||++++++.||.|||+|+|.+.+|. ..|+|+|||++.+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 6788999999999999998 44889999999999966 88999999999999999999887754 6799999999999
Q ss_pred CCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecc--cceee---EEE
Q 031204 77 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGE---VKI 151 (164)
Q Consensus 77 ~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~---l~l 151 (164)
.++.+|.+.+++.++..++.. +.||.|.+ ...|+ |++
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~~~-------------------------------------~~~~~L~~~~~k~G~~~~~~~ 2095 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEGTY-------------------------------------SGEYSLNPESNKDGSSRTLEI 2095 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCcee-------------------------------------eeeeecCcccccCCCcceEEE
Confidence 556999999999999876543 88898886 56898 999
Q ss_pred EEEEEe
Q 031204 152 QLEWID 157 (164)
Q Consensus 152 ~l~~~~ 157 (164)
+++|-+
T Consensus 2096 e~~w~~ 2101 (2102)
T PLN03200 2096 EFQWSN 2101 (2102)
T ss_pred EEEecC
Confidence 999953
No 71
>PLN03008 Phospholipase D delta
Probab=99.81 E-value=5.3e-19 Score=147.08 Aligned_cols=120 Identities=23% Similarity=0.429 Sum_probs=101.7
Q ss_pred cEEEEEEEEEeEcCCCCC-------------------------------------------CCCCCcEEEEEECCE--Ee
Q 031204 5 MGLLRVHVLRGVNLAVRD-------------------------------------------VVSSDPYVVIKMGKQ--LK 39 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~-------------------------------------------~~~~dpyv~v~~~~~--~~ 39 (164)
-|.|.++|.+|++|++++ .+++||||++.++++ .+
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 488999999999998521 135699999999876 89
Q ss_pred eeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCcc
Q 031204 40 TRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 119 (164)
Q Consensus 40 T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~ 119 (164)
|+++.++.||+|||+|.|.+.++...|.|+|||++.++ +++||++.+++.++..+...
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v--------------------- 150 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI--------------------- 150 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce---------------------
Confidence 99999999999999999999888788999999999995 68999999999998775432
Q ss_pred ccccceeEeeCCeEEEEEeEEeccc------ceeeEEEEEEEEecCCCC
Q 031204 120 LAEESHIVWTDGKLVQNLFLRLRNV------EVGEVKIQLEWIDIPGSR 162 (164)
Q Consensus 120 ~~~~~~~~~~~g~~~~~~~~~l~~~------~~G~l~l~l~~~~~~~~~ 162 (164)
+.|++|.+. ..++|+|+|+|.|+....
T Consensus 151 ----------------d~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 151 ----------------SGWFPVLGASGKPPKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred ----------------EEEEEccccCCCCCCCCcEEEEEEEEEEccccc
Confidence 778877543 347999999999998753
No 72
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.81 E-value=1.6e-18 Score=120.15 Aligned_cols=89 Identities=27% Similarity=0.433 Sum_probs=72.5
Q ss_pred EEEEEEEeEc--CCCCC-CCCCCcEEEEEEC-----CE-EeeeeeeCCCCCeEecEEEEEEeCC---------CCcEEEE
Q 031204 8 LRVHVLRGVN--LAVRD-VVSSDPYVVIKMG-----KQ-LKTRVVKNNVNPEWNEDLTLSISDS---------NLPIKLT 69 (164)
Q Consensus 8 L~v~v~~a~~--L~~~~-~~~~dpyv~v~~~-----~~-~~T~~~~~t~~P~w~e~~~f~~~~~---------~~~l~i~ 69 (164)
..++|..|++ |+... .+..||||++++. .+ .+|+++++|.||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666666 66665 6789999999972 23 9999999999999999999999644 3469999
Q ss_pred EEeCCCC-CCCceeEEEEEechhhhhhh
Q 031204 70 VYDKDTF-SLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 70 v~d~~~~-~~~~~lG~~~v~l~~l~~~~ 96 (164)
|||.+.+ .+|++||++.++|+.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~ 111 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC 111 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC
Confidence 9999986 47999999999999986654
No 73
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=6.1e-19 Score=118.64 Aligned_cols=88 Identities=32% Similarity=0.474 Sum_probs=79.1
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE---EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ---LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~---~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~ 81 (164)
.|+|.|++|++|+..+ .+.+||||++.+++. .+|++++++.||.|||+|.|.+..+ ...|.|+|||++.++.+++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 4789999999999988 789999999999876 6888899999999999999998654 4569999999999989999
Q ss_pred eEEEEEechhhhh
Q 031204 82 MGDAEFYITPFLE 94 (164)
Q Consensus 82 lG~~~v~l~~l~~ 94 (164)
||++.+++++...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998764
No 74
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.81 E-value=4.4e-19 Score=120.35 Aligned_cols=90 Identities=31% Similarity=0.487 Sum_probs=80.2
Q ss_pred cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCC
Q 031204 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDT 75 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~ 75 (164)
.+.|+|+|++|++|+..+ .+.+||||.+.+.+ . ++|+++.++.+|.|||+|.|.+... ...|.|+|||++.
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 378999999999999887 77899999999963 3 9999999999999999999998754 3569999999998
Q ss_pred CCCCceeEEEEEechhhhh
Q 031204 76 FSLDDKMGDAEFYITPFLE 94 (164)
Q Consensus 76 ~~~~~~lG~~~v~l~~l~~ 94 (164)
.+.+++||++.++++++..
T Consensus 92 ~~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIK 110 (131)
T ss_pred CCCcceeEEEEEeHHHhCc
Confidence 8899999999999998865
No 75
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.80 E-value=6.5e-19 Score=119.82 Aligned_cols=89 Identities=35% Similarity=0.463 Sum_probs=79.1
Q ss_pred cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031204 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD 72 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d 72 (164)
...|.|.|+|++|++|++.+ .+.+||||++.+.+ . ++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 35689999999999999988 78999999999853 2 8999999999999999999998643 3569999999
Q ss_pred CCCCCCCceeEEEEEechh
Q 031204 73 KDTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~ 91 (164)
++..+++++||++.+++..
T Consensus 90 ~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCCccEEEEEEEecCC
Confidence 9998899999999999975
No 76
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.80 E-value=7.4e-19 Score=120.16 Aligned_cols=88 Identities=22% Similarity=0.416 Sum_probs=77.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEEC----CE-EeeeeeeCCCCCeEecEEEEEEeCC----------------CCcE
Q 031204 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQ-LKTRVVKNNVNPEWNEDLTLSISDS----------------NLPI 66 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~----~~-~~T~~~~~t~~P~w~e~~~f~~~~~----------------~~~l 66 (164)
|+|+|++|++|+....+.+|||+++++. .. ++|+++.++.+|.|+|+|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5799999999987756789999999998 45 9999999999999999999998653 3469
Q ss_pred EEEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204 67 KLTVYDKDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 67 ~i~v~d~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
.|+|||.+..+++++||++.+++.++...
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~ 109 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQA 109 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCC
Confidence 99999999988999999999999988743
No 77
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.80 E-value=4.6e-18 Score=115.95 Aligned_cols=88 Identities=26% Similarity=0.390 Sum_probs=75.6
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-------------E-EeeeeeeCCCCCeE-ecEEEEEEeCCCCcEEEEE
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------------Q-LKTRVVKNNVNPEW-NEDLTLSISDSNLPIKLTV 70 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------~-~~T~~~~~t~~P~w-~e~~~f~~~~~~~~l~i~v 70 (164)
.++|++++|++|+ ++ +|++|||+++.+.+ + ++|+++.++.||.| ||+|.|.+. ..+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4689999999998 66 89999999999852 4 89999999999999 999999985 456799999
Q ss_pred EeCCCCCC---CceeEEEEEechhhhhhh
Q 031204 71 YDKDTFSL---DDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 71 ~d~~~~~~---~~~lG~~~v~l~~l~~~~ 96 (164)
||++..++ +++||++.+++.++....
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence 99765433 799999999999997654
No 78
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.79 E-value=7.7e-19 Score=119.77 Aligned_cols=88 Identities=23% Similarity=0.352 Sum_probs=77.2
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~ 73 (164)
..+.|.|+|++|+||+..+ .+.+||||++++.+. .+|++++++.||+|||+|.|.+.. .+..|.|+|||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4578999999999999988 789999999998531 689999999999999999999864 245699999999
Q ss_pred CCCCCCceeEEEEEechh
Q 031204 74 DTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~ 91 (164)
+.++++++||++.+....
T Consensus 93 d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCCeeEEEEECCCC
Confidence 999999999999997654
No 79
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=8.6e-19 Score=119.91 Aligned_cols=91 Identities=22% Similarity=0.370 Sum_probs=79.5
Q ss_pred cccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEE
Q 031204 3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVY 71 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~ 71 (164)
...++|.|+|++|+||++.+ .+.+||||++.+.+ . .+|++.+++.||+|||+|.|.+.. .+..|.|+||
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 35689999999999999988 77899999999853 1 689999999999999999999963 2457999999
Q ss_pred eCCCCCCCceeEEEEEechhhh
Q 031204 72 DKDTFSLDDKMGDAEFYITPFL 93 (164)
Q Consensus 72 d~~~~~~~~~lG~~~v~l~~l~ 93 (164)
|.+.++++++||++.+++....
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999987554
No 80
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.79 E-value=8.3e-19 Score=119.72 Aligned_cols=88 Identities=22% Similarity=0.362 Sum_probs=77.5
Q ss_pred ccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031204 4 LMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY 71 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~ 71 (164)
..++|.|+|++|+||++.+ .+.+||||++++... .+|++.+++.||+|||.|.|.+... +..|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 4588999999999999987 355899999998753 6899999999999999999998642 456999999
Q ss_pred eCCCCCCCceeEEEEEechh
Q 031204 72 DKDTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 72 d~~~~~~~~~lG~~~v~l~~ 91 (164)
|++.++++++||++.+++..
T Consensus 93 d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCCcCcceeceEEecCcC
Confidence 99999999999999999865
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.79 E-value=7.9e-19 Score=119.89 Aligned_cols=88 Identities=26% Similarity=0.391 Sum_probs=77.8
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC--E----EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--Q----LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~--~----~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~ 73 (164)
..+.|.|+|++|++|+..+ .+.+||||++.+.+ . .+|++++++.||.|+|+|.|.+.. ....|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 3578999999999999988 88999999999853 2 789999999999999999999863 235689999999
Q ss_pred CCCCCCceeEEEEEechh
Q 031204 74 DTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~ 91 (164)
+.++++++||++.+++..
T Consensus 93 d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCCccEEEEEECCcC
Confidence 999999999999999988
No 82
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.79 E-value=5.5e-20 Score=142.57 Aligned_cols=90 Identities=34% Similarity=0.512 Sum_probs=82.2
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC----E--EeeeeeeCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCCC
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK----Q--LKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDTF 76 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~----~--~~T~~~~~t~~P~w~e~~~f~~~~~--~~~l~i~v~d~~~~ 76 (164)
..|+|+|.+|+||.+++ +|-+|||+++.+-+ + ++|++++.++||+|||+|+|.+... ++.|.|+||||++.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 46889999999999999 99999999999863 2 9999999999999999999999754 46799999999999
Q ss_pred CCCceeEEEEEechhhhhh
Q 031204 77 SLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 77 ~~~~~lG~~~v~l~~l~~~ 95 (164)
+++||+|...+.++++...
T Consensus 260 sRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA 278 (683)
T ss_pred ccccccceecccHHHHhhc
Confidence 9999999999999998875
No 83
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.79 E-value=1.5e-18 Score=117.35 Aligned_cols=89 Identities=16% Similarity=0.312 Sum_probs=76.0
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E---EeeeeeeCCC-CCeEecEEEEEEeCCC--CcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q---LKTRVVKNNV-NPEWNEDLTLSISDSN--LPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~---~~T~~~~~t~-~P~w~e~~~f~~~~~~--~~l~i~v~d~ 73 (164)
..|+|+|+|++|+||++.. .+.+||||++++.. . .+|++++++. +|.|||+|.|++.... ..|.++|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 4688999999999999875 66779999998752 2 8999999985 6999999999997532 3588999999
Q ss_pred CCCCCCceeEEEEEechhh
Q 031204 74 DTFSLDDKMGDAEFYITPF 92 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~l 92 (164)
+..+++++||++.+..+..
T Consensus 92 ~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCcCCceEEEEEECCccC
Confidence 9988999999999998764
No 84
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.78 E-value=1.3e-17 Score=109.93 Aligned_cols=79 Identities=25% Similarity=0.545 Sum_probs=68.5
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeC-------C
Q 031204 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDK-------D 74 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~-------~ 74 (164)
|.|+|.+|+||+ +.+||||++.+.+ . ++|+++.++.||+|||+|.|++. ....|.+.|||+ +
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccccccc
Confidence 689999999996 4689999998863 3 99999999999999999999996 466899999998 4
Q ss_pred CCCCCceeEEEEEechh
Q 031204 75 TFSLDDKMGDAEFYITP 91 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~ 91 (164)
..+.|+++|++.+.++.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 56789999998888754
No 85
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.78 E-value=2.5e-17 Score=111.10 Aligned_cols=88 Identities=31% Similarity=0.510 Sum_probs=76.2
Q ss_pred EEEEEEEEEeEcCCCCC---CCCCCcEEEEEEC------CE-EeeeeeeCCC-CCeEecEEEEEEeCCC-CcEEEEEEeC
Q 031204 6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMG------KQ-LKTRVVKNNV-NPEWNEDLTLSISDSN-LPIKLTVYDK 73 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~------~~-~~T~~~~~t~-~P~w~e~~~f~~~~~~-~~l~i~v~d~ 73 (164)
-.|+|+|++|++|+..+ .+..||||++++. .. ++|+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999876 5789999999984 34 8999988765 9999999999997655 4599999999
Q ss_pred CCCCCCceeEEEEEechhhhh
Q 031204 74 DTFSLDDKMGDAEFYITPFLE 94 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~l~~ 94 (164)
+.. ++++||++.++++++..
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~ 101 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ 101 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC
Confidence 988 99999999999998854
No 86
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.77 E-value=2.9e-18 Score=117.06 Aligned_cols=89 Identities=29% Similarity=0.402 Sum_probs=78.1
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~ 73 (164)
..|.|.|+|++|++|+..+ .+.+||||++.+.+ . ++|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 5689999999999999988 78999999999852 2 7899999999999999999998633 24699999999
Q ss_pred CCCCCCceeEEEEEechhh
Q 031204 74 DTFSLDDKMGDAEFYITPF 92 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~l 92 (164)
+.++++++||++.+++...
T Consensus 93 ~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 93 DRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCCCceeEEEEECCccC
Confidence 9998999999999999764
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.77 E-value=3.2e-18 Score=116.80 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=75.7
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~ 73 (164)
..|.|.|+|++|++|+..+ .+.+||||++.+.. . ++|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 4589999999999999988 78999999999732 2 7999999999999999999998532 23599999999
Q ss_pred CCCCCCceeEEEEEechh
Q 031204 74 DTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~ 91 (164)
+..+++++||++.+....
T Consensus 92 d~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 92 NVKSSNDFIGRIVIGQYS 109 (135)
T ss_pred CCCCCCcEEEEEEEcCcc
Confidence 999999999999876543
No 88
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.77 E-value=5.1e-18 Score=115.87 Aligned_cols=89 Identities=28% Similarity=0.384 Sum_probs=78.1
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---E-EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---Q-LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~-~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~ 73 (164)
..++|.|+|++|+||+..+ .+.+||||++.+. + . ++|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 4688999999999999888 7899999999983 2 2 789999999999999999999853 235699999999
Q ss_pred CCCCCCceeEEEEEechhh
Q 031204 74 DTFSLDDKMGDAEFYITPF 92 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~l 92 (164)
+.++++++||++.+++.+.
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9998999999999999875
No 89
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.76 E-value=7.1e-18 Score=114.88 Aligned_cols=88 Identities=28% Similarity=0.429 Sum_probs=76.8
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~ 73 (164)
..|.|+|+|++|++|++.+ .+.+||||++++.. . ++|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4689999999999999988 88999999999842 1 7899999999999999999998532 23599999999
Q ss_pred CCCCCCceeEEEEEechh
Q 031204 74 DTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~ 91 (164)
+.++++++||++.+++..
T Consensus 92 ~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 92 DRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCCCceeEEEEECCCC
Confidence 999899999999998763
No 90
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.4e-17 Score=132.41 Aligned_cols=93 Identities=32% Similarity=0.474 Sum_probs=82.6
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE----EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ----LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDT 75 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~----~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~ 75 (164)
....|.|+|++|++|+..+ .|.+||||++++.+. .+|++.++++||.|||+|.|.+.. ..+.|.++|||.|+
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 3567999999999999999 678999999999854 999999999999999999999753 35679999999999
Q ss_pred CCCCceeEEEEEechhhhhhh
Q 031204 76 FSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 76 ~~~~~~lG~~~v~l~~l~~~~ 96 (164)
++++++||++.+++..+....
T Consensus 245 fsr~~~iGev~~~l~~~~~~~ 265 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLS 265 (421)
T ss_pred cccccEEEEEEecCccccccc
Confidence 999999999999988776654
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.75 E-value=2.8e-18 Score=116.62 Aligned_cols=88 Identities=30% Similarity=0.429 Sum_probs=78.6
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~ 73 (164)
..++|.|+|++|++|+..+ .+.+||||++++.+ . ++|+++.++.+|.|||+|.|.+... ...|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 3578999999999999888 78999999999864 1 7999999999999999999998654 35699999999
Q ss_pred CCCCCCceeEEEEEechh
Q 031204 74 DTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~ 91 (164)
+..+++++||.+.+++++
T Consensus 92 ~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCCceeEEEEECCCC
Confidence 988899999999999988
No 92
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.74 E-value=4.1e-17 Score=109.12 Aligned_cols=87 Identities=29% Similarity=0.444 Sum_probs=75.2
Q ss_pred EEEEeEcCCCCC-CCCCCcEEEEEECC-------E-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCC----C
Q 031204 11 HVLRGVNLAVRD-VVSSDPYVVIKMGK-------Q-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDT----F 76 (164)
Q Consensus 11 ~v~~a~~L~~~~-~~~~dpyv~v~~~~-------~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~----~ 76 (164)
-.++|++|+..+ .+.+||||++++.+ . ++|++++++.||.|+|+|.|.+.. ....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 347899999988 88999999999863 2 899999999999999999998653 34569999999997 7
Q ss_pred CCCceeEEEEEechhhhhhhc
Q 031204 77 SLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 77 ~~~~~lG~~~v~l~~l~~~~~ 97 (164)
+++++||++.+++.++..+..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~ 105 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG 105 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC
Confidence 899999999999999987543
No 93
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=3e-17 Score=110.20 Aligned_cols=92 Identities=28% Similarity=0.405 Sum_probs=79.3
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEe
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYD 72 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d 72 (164)
..+.|+|+|++|++|++.+ .+.+||||++.+.+ . ++|++++++.||.|||+|.|..... ...+.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 4578999999999999888 77899999999842 2 9999999999999999999964322 3569999999
Q ss_pred CCCCCCCceeEEEEEechhhhhhh
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
++.. .+++||++.++++++..+.
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCCc
Confidence 9988 8999999999999988754
No 94
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.73 E-value=3.9e-17 Score=111.68 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=76.6
Q ss_pred ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031204 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD 74 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~ 74 (164)
..++|.|+|++|+||++.+.+.+||||++.+.+ . ++|++.+++.||.|||+|.|.+... ...|.|+||+.+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 457899999999999987767799999999863 2 7899999999999999999998532 356999999999
Q ss_pred CCCCCceeEEEEEechhh
Q 031204 75 TFSLDDKMGDAEFYITPF 92 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l 92 (164)
..+++++||++.+.....
T Consensus 93 ~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCCcceEEEEEECCccc
Confidence 988999999999986543
No 95
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.72 E-value=3e-17 Score=133.04 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=106.9
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCcee
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM 82 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~l 82 (164)
..|.|.|.+|+||++.+ .|..||||.+.++.. .||.++.+++.|-|.|+|.|++...-..|.|.|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 45889999999999999 899999999999987 9999999999999999999999866678999999999 8899999
Q ss_pred EEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccc-----eeeEEEEEEEEe
Q 031204 83 GDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE-----VGEVKIQLEWID 157 (164)
Q Consensus 83 G~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~l~l~l~~~~ 157 (164)
|.+.+.=+++...... +.||.|..+. +|+|||++++.+
T Consensus 84 GKvai~re~l~~~~~~-------------------------------------d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGK-------------------------------------DTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ceeeeeHHHHhhCCCC-------------------------------------ccceeccccCCChhhceeEEEEEEecc
Confidence 9999988887764432 7788887654 699999999999
Q ss_pred cCCCCCC
Q 031204 158 IPGSRGL 164 (164)
Q Consensus 158 ~~~~~~~ 164 (164)
....+|+
T Consensus 127 ~~~~~~~ 133 (800)
T KOG2059|consen 127 AIQSSGL 133 (800)
T ss_pred ccCCCcc
Confidence 8887764
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.70 E-value=2.5e-16 Score=103.62 Aligned_cols=85 Identities=31% Similarity=0.542 Sum_probs=72.6
Q ss_pred EEEEEeEcCCCCC-CCCCCcEEEEEECC------E-EeeeeeeCCCCCeEecEEEEEEeC-----CCCcEEEEEEeCCCC
Q 031204 10 VHVLRGVNLAVRD-VVSSDPYVVIKMGK------Q-LKTRVVKNNVNPEWNEDLTLSISD-----SNLPIKLTVYDKDTF 76 (164)
Q Consensus 10 v~v~~a~~L~~~~-~~~~dpyv~v~~~~------~-~~T~~~~~t~~P~w~e~~~f~~~~-----~~~~l~i~v~d~~~~ 76 (164)
+-.++|++|+..+ .+.+||||++++.+ . ++|++++++.||.|| +|.|.... ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 4456899999998 78999999998742 2 999999999999999 68887532 246799999999999
Q ss_pred CCCceeEEEEEechhhhhh
Q 031204 77 SLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 77 ~~~~~lG~~~v~l~~l~~~ 95 (164)
++|++||++.++++++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 9999999999999999853
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.67 E-value=3.8e-16 Score=97.42 Aligned_cols=79 Identities=34% Similarity=0.625 Sum_probs=70.8
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCce
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~~ 81 (164)
|+|+|.+|++|+..+ .+.++||+++.+.+ . ++|++..++.+|.|+|+|.|.+..+ ...|.|+|||.+..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999877 77999999999987 5 9999999999999999999997543 3459999999999988999
Q ss_pred eEEEE
Q 031204 82 MGDAE 86 (164)
Q Consensus 82 lG~~~ 86 (164)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99874
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7.5e-16 Score=124.59 Aligned_cols=91 Identities=30% Similarity=0.506 Sum_probs=82.1
Q ss_pred cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC-------
Q 031204 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT------- 75 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~------- 75 (164)
...++++|++|++|..++ .|++|||+...+++. .+|+++...+||+|||.|.|++.+....|++.|||.+.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 467899999999999999 999999999999998 99999999999999999999999988899999999874
Q ss_pred ----CCCCceeEEEEEechhhhhh
Q 031204 76 ----FSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 76 ----~~~~~~lG~~~v~l~~l~~~ 95 (164)
-.+|||+|+..|.+..+..+
T Consensus 374 qkl~resddflgqtvievrtlsge 397 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGE 397 (1283)
T ss_pred HHhhhcccccccceeEEEEecccc
Confidence 23789999999988776543
No 99
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=121.46 Aligned_cols=94 Identities=27% Similarity=0.516 Sum_probs=87.2
Q ss_pred cccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031204 3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS 77 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~ 77 (164)
.++|+|.|+|.+|++|...+ .+..|||+++.+.+. .+|++.+++.||+|||+|.+.+..-+++|.+++||.+...
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~ 512 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK 512 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccC
Confidence 47899999999999999888 789999999998876 9999999999999999999999888899999999998888
Q ss_pred CCceeEEEEEechhhhhhh
Q 031204 78 LDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l~~~~ 96 (164)
+|+.+|++.++|..+....
T Consensus 513 sd~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNP 531 (1227)
T ss_pred CcceeeeEEechHHhhhcc
Confidence 9999999999999887754
No 100
>PLN02270 phospholipase D alpha
Probab=99.58 E-value=4.2e-14 Score=118.04 Aligned_cols=121 Identities=20% Similarity=0.344 Sum_probs=101.6
Q ss_pred ccEEEEEEEEEeEcCCCCC-------------------CCCCCcEEEEEECCE--EeeeeeeC-CCCCeEecEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-------------------VVSSDPYVVIKMGKQ--LKTRVVKN-NVNPEWNEDLTLSISD 61 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-------------------~~~~dpyv~v~~~~~--~~T~~~~~-t~~P~w~e~~~f~~~~ 61 (164)
.-|.|.++|.+|++|++.+ .+++|||+.+.+++. .||+++.+ ..||.|+|+|.+++..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 4589999999999998631 246799999999987 99999988 4699999999999998
Q ss_pred CCCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEe
Q 031204 62 SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRL 141 (164)
Q Consensus 62 ~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 141 (164)
....+.|+|.|.+.+ ...+||.+.+++.++..+... +.||++
T Consensus 86 ~~~~v~f~vkd~~~~-g~~~ig~~~~p~~~~~~g~~i-------------------------------------~~~~~~ 127 (808)
T PLN02270 86 MASNIIFTVKDDNPI-GATLIGRAYIPVEEILDGEEV-------------------------------------DRWVEI 127 (808)
T ss_pred CcceEEEEEecCCcc-CceEEEEEEEEHHHhcCCCcc-------------------------------------ccEEec
Confidence 888899999999998 556999999999999886543 778877
Q ss_pred cccc------eeeEEEEEEEEecCCCC
Q 031204 142 RNVE------VGEVKIQLEWIDIPGSR 162 (164)
Q Consensus 142 ~~~~------~G~l~l~l~~~~~~~~~ 162 (164)
-+.. .-+|+++++|.++....
T Consensus 128 ~~~~~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 128 LDNDKNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred cCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence 5532 24899999999987643
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.57 E-value=7e-14 Score=89.25 Aligned_cols=90 Identities=34% Similarity=0.589 Sum_probs=79.2
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E-EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCc
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q-LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDD 80 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~-~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~~~~~ 80 (164)
.|.|.|++|+++.... .+..+||+.+.+.. . ++|++..++.+|.|+|+|.|.+... ...|.|+||+....+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 3789999999998877 46789999999985 4 9999999999999999999999876 677999999999887789
Q ss_pred eeEEEEEechhhhhhh
Q 031204 81 KMGDAEFYITPFLEAL 96 (164)
Q Consensus 81 ~lG~~~v~l~~l~~~~ 96 (164)
++|.+.+++.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999998887654
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.56 E-value=7.7e-14 Score=88.69 Aligned_cols=86 Identities=43% Similarity=0.741 Sum_probs=77.2
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECC-E-EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCceeE
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-Q-LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDDKMG 83 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~-~-~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~~~~~~lG 83 (164)
|.|.|++|+++.... ....+|||.+.+.. . ++|++..++.+|.|++.|.|.+.. ....+.|+||+.+..+.+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998755 66899999999998 6 999999999999999999999986 4566999999999887789999
Q ss_pred EEEEechhhh
Q 031204 84 DAEFYITPFL 93 (164)
Q Consensus 84 ~~~v~l~~l~ 93 (164)
.+.+++.++.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999987
No 103
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=8.7e-14 Score=94.04 Aligned_cols=89 Identities=26% Similarity=0.287 Sum_probs=75.7
Q ss_pred EEEEEEEeEcCCCCC---CC--CCCcEEEEEECCE----EeeeeeeCCCC--CeEecEEEEEEeC---------------
Q 031204 8 LRVHVLRGVNLAVRD---VV--SSDPYVVIKMGKQ----LKTRVVKNNVN--PEWNEDLTLSISD--------------- 61 (164)
Q Consensus 8 L~v~v~~a~~L~~~~---~~--~~dpyv~v~~~~~----~~T~~~~~t~~--P~w~e~~~f~~~~--------------- 61 (164)
|+|.|.+|++++..+ .| .+||||++.+.+. ++|.+..++.| |.||++|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999966543 45 4999999999862 99999999999 9999999998754
Q ss_pred ------C---CCcEEEEEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204 62 ------S---NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 62 ------~---~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
. ...|.++|||.|.+++|++||.+++++..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1 2459999999999999999999999999877653
No 104
>PLN02223 phosphoinositide phospholipase C
Probab=99.51 E-value=5.1e-13 Score=107.61 Aligned_cols=92 Identities=26% Similarity=0.498 Sum_probs=77.9
Q ss_pred EEEEEEEEEeEcCCCC-----C-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEEEe
Q 031204 6 GLLRVHVLRGVNLAVR-----D-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYD 72 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~-----~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v~d 72 (164)
.+|.|+|++|++++.. + ...+||||+|.+.+. .+|.+..++.||.|||+|.|.+..|+.. |.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987511 1 356899999998753 6788777899999999999999888755 8999999
Q ss_pred CCCCCCCceeEEEEEechhhhhhhc
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~~~ 97 (164)
.+..+.++|+|+..+|+..+..+..
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR 513 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGIR 513 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCce
Confidence 9988889999999999999888653
No 105
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.47 E-value=1.8e-13 Score=116.55 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=89.2
Q ss_pred CCcccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCC
Q 031204 1 MENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTF 76 (164)
Q Consensus 1 ~~~~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~-~~~l~i~v~d~~~~ 76 (164)
|-.+.|-|+|.+.+|.||+..+ +|.+||||++.+.+. ++|+++++++||.|||++.+++.+. ...+.+.|+|++..
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC
Confidence 3457899999999999999999 888999999999987 9999999999999999999999754 45699999999999
Q ss_pred CCCceeEEEEEechhhhhhhccc
Q 031204 77 SLDDKMGDAEFYITPFLEALKMR 99 (164)
Q Consensus 77 ~~~~~lG~~~v~l~~l~~~~~~~ 99 (164)
.+++.||.+.++|..+..+....
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n 1137 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTN 1137 (1227)
T ss_pred CCccccccccccHhhcCcCCccc
Confidence 99999999999999998876543
No 106
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=5.6e-13 Score=106.23 Aligned_cols=88 Identities=32% Similarity=0.473 Sum_probs=76.7
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---E---EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---Q---LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~---~---~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~ 73 (164)
..|+|+|.|++|++|+..+ .+..||||++.+.. . .+|.+.+++.||+|||+|.|.+... +..+.|+|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 3589999999999999999 78899999999853 1 8999999999999999999988632 34699999999
Q ss_pred CCCCCCceeEEEEEechh
Q 031204 74 DTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~ 91 (164)
+.++++++||++.+....
T Consensus 376 d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccccceeeEEEecCCC
Confidence 999999999998887764
No 107
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.42 E-value=1.9e-12 Score=106.61 Aligned_cols=92 Identities=25% Similarity=0.428 Sum_probs=78.7
Q ss_pred EEEEEEEEeEcCCCCC-----CCCCCcEEEEEECCE------Eeee-eeeCCCCCeEecEEEEEEeCCCCc-EEEEEEeC
Q 031204 7 LLRVHVLRGVNLAVRD-----VVSSDPYVVIKMGKQ------LKTR-VVKNNVNPEWNEDLTLSISDSNLP-IKLTVYDK 73 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-----~~~~dpyv~v~~~~~------~~T~-~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v~d~ 73 (164)
+|.|.|+++.++++.. ....|||+.+++.+. .+|+ +..++-+|.|+|+|.|.+..|+-. |.|.|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999776544 246799999998753 8999 555689999999999999988865 89999999
Q ss_pred CCCCCCceeEEEEEechhhhhhhcc
Q 031204 74 DTFSLDDKMGDAEFYITPFLEALKM 98 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l~~l~~~~~~ 98 (164)
+..++|+|+|+..+|+..+..+.++
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999887654
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=99.40 E-value=7.1e-12 Score=102.79 Aligned_cols=92 Identities=21% Similarity=0.365 Sum_probs=77.4
Q ss_pred cEEEEEEEEEeEcCCCC--C-----CCCCCcEEEEEECC-----E-EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031204 5 MGLLRVHVLRGVNLAVR--D-----VVSSDPYVVIKMGK-----Q-LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV 70 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~--~-----~~~~dpyv~v~~~~-----~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v 70 (164)
..+|.|+|++|++++.. + ....||||++.+-+ . .+|+++.++.||.|||+|.|.+..++.. +.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999987532 1 23469999999865 2 8999999999999999999999877654 89999
Q ss_pred EeCCCCCCCceeEEEEEechhhhhhh
Q 031204 71 YDKDTFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 71 ~d~~~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
||++..+.++++|++.+++..+..+.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy 574 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI 574 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc
Confidence 99998888999999999999988864
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.39 E-value=4.4e-12 Score=103.86 Aligned_cols=93 Identities=19% Similarity=0.337 Sum_probs=78.4
Q ss_pred cEEEEEEEEEeEcCCCC------C-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031204 5 MGLLRVHVLRGVNLAVR------D-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV 70 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~------~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v 70 (164)
..+|.|+|+.+.+++.. + ....||||+|.+-+. .+|++..++.||.|||+|.|.+.-++-. |.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 36799999999987521 1 345799999998642 7889888899999999999999877754 89999
Q ss_pred EeCCCCCCCceeEEEEEechhhhhhhc
Q 031204 71 YDKDTFSLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 71 ~d~~~~~~~~~lG~~~v~l~~l~~~~~ 97 (164)
+|++....++|+|+..+++..|..+..
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999998899999999999999988754
No 110
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.37 E-value=5.8e-12 Score=80.85 Aligned_cols=86 Identities=21% Similarity=0.324 Sum_probs=72.9
Q ss_pred EEEEEEEeEcCCCCC----CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCce
Q 031204 8 LRVHVLRGVNLAVRD----VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 8 L~v~v~~a~~L~~~~----~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~ 81 (164)
|+|+|.+|+++.... .+.++||+.+++++. .||++ +.||.|||+|.|++. ....+.+.|||...- ..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence 689999999998776 568899999999987 88877 589999999999995 566799999998653 5568
Q ss_pred eEEEEEechhhhhhhcc
Q 031204 82 MGDAEFYITPFLEALKM 98 (164)
Q Consensus 82 lG~~~v~l~~l~~~~~~ 98 (164)
+|...+.++++..+...
T Consensus 76 i~llW~~~sdi~Ee~Rr 92 (109)
T cd08689 76 VGLLWLRLSDIAEEIRK 92 (109)
T ss_pred eeeehhhHHHHHHHHHH
Confidence 99999999999887543
No 111
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.33 E-value=6.4e-12 Score=104.03 Aligned_cols=92 Identities=25% Similarity=0.421 Sum_probs=78.7
Q ss_pred EEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE-------EeeeeeeCCCCCeEe-cEEEEEEeCCCCc-EEEEEEeCCCC
Q 031204 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-------LKTRVVKNNVNPEWN-EDLTLSISDSNLP-IKLTVYDKDTF 76 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-------~~T~~~~~t~~P~w~-e~~~f~~~~~~~~-l~i~v~d~~~~ 76 (164)
-.|.|.|+.|++|+...-+...||+.+.+.+. ++|.++.+++||+|| |.|+|++.+|+-. |.|.|++.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 36889999999999665566779999998642 666677789999999 9999999988754 89999999999
Q ss_pred CCCceeEEEEEechhhhhhhc
Q 031204 77 SLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 77 ~~~~~lG~~~v~l~~l~~~~~ 97 (164)
+...|||++.+|+..+..+..
T Consensus 1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred CCcceeeeeecchhhhhccce
Confidence 888899999999999887643
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.33 E-value=1.9e-11 Score=100.00 Aligned_cols=94 Identities=20% Similarity=0.309 Sum_probs=77.9
Q ss_pred cEEEEEEEEEeEcCC----CCC---CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031204 5 MGLLRVHVLRGVNLA----VRD---VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV 70 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~----~~~---~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~-l~i~v 70 (164)
..+|.|+|+.|++++ ... ....||||+|.+.+. .+|+++.++.||.|||+|.|.+..++-. |.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998753 111 346799999998632 8999999989999999999999877754 89999
Q ss_pred EeCCCCCCCceeEEEEEechhhhhhhcc
Q 031204 71 YDKDTFSLDDKMGDAEFYITPFLEALKM 98 (164)
Q Consensus 71 ~d~~~~~~~~~lG~~~v~l~~l~~~~~~ 98 (164)
||++..+.++|+|+..+++..+..+...
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~ 558 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIRA 558 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccce
Confidence 9999888899999999999999887543
No 113
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.32 E-value=8.2e-12 Score=100.59 Aligned_cols=92 Identities=29% Similarity=0.536 Sum_probs=83.1
Q ss_pred cEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECCE-EeeeeeeCCCCCeEe-cEEEEEEeCC---CCcEEEEEEeCCCCC
Q 031204 5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWN-EDLTLSISDS---NLPIKLTVYDKDTFS 77 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~-e~~~f~~~~~---~~~l~i~v~d~~~~~ 77 (164)
.|.|-|.|..|++||-++ ....|.|+.+++++. ++|.+..+++||.|| +.|.|++.+. +++|.|+++|++..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 478899999999999998 557899999999999 999999999999999 7899999754 467999999999999
Q ss_pred CCceeEEEEEechhhhhhh
Q 031204 78 LDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l~~~~ 96 (164)
.+|-||.+.++++.+.-+.
T Consensus 82 andaigkv~i~idpl~~e~ 100 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEE 100 (1169)
T ss_pred cccccceeeeccChHHHHh
Confidence 9999999999999987543
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=99.31 E-value=5.8e-11 Score=96.98 Aligned_cols=92 Identities=17% Similarity=0.302 Sum_probs=76.7
Q ss_pred EEEEEEEEEeEcCCC---CC----CCCCCcEEEEEECCE------EeeeeeeCCCCCeE-ecEEEEEEeCCCCc-EEEEE
Q 031204 6 GLLRVHVLRGVNLAV---RD----VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEW-NEDLTLSISDSNLP-IKLTV 70 (164)
Q Consensus 6 g~L~v~v~~a~~L~~---~~----~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w-~e~~~f~~~~~~~~-l~i~v 70 (164)
..|+|+|++|++|+. .. ....||||++.+.+. ++|++..++.||.| +|+|.|.+..++-. |.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 11 235799999998642 79999988899999 99999999877754 89999
Q ss_pred EeCCCCCCCceeEEEEEechhhhhhhc
Q 031204 71 YDKDTFSLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 71 ~d~~~~~~~~~lG~~~v~l~~l~~~~~ 97 (164)
+|.+..+.++|+|+..+++..+..+..
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 999988899999999999999988654
No 115
>PLN02352 phospholipase D epsilon
Probab=99.19 E-value=3.1e-10 Score=94.90 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=88.9
Q ss_pred ccEEEEEEEEEeEcCCCC----C--CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031204 4 LMGLLRVHVLRGVNLAVR----D--VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKD 74 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~----~--~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~l~i~v~d~~ 74 (164)
.-|+|.++|.+|+-+... . ....+||+.+.+++. .|| .+..||.|+|+|.+++.... ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 358999999999843321 1 122399999999987 888 55669999999999998776 679999988
Q ss_pred CCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCccccccceeEeeCCeEEEEEeEEecccc----ee-eE
Q 031204 75 TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE----VG-EV 149 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G-~l 149 (164)
.-.+||.+.+++.++..+.. ..+.|+++-+.. .| +|
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~------------------------------------~~~~~~~~~~~~~~p~~~~~~ 123 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEAS------------------------------------FINGFFPLIMENGKPNPELKL 123 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCc------------------------------------ccceEEEcccCCCCCCCCCEE
Confidence 35799999999999887542 127788775432 34 99
Q ss_pred EEEEEEEecCCC
Q 031204 150 KIQLEWIDIPGS 161 (164)
Q Consensus 150 ~l~l~~~~~~~~ 161 (164)
+++++|.|+...
T Consensus 124 ~~~~~~~~~~~~ 135 (758)
T PLN02352 124 RFMLWFRPAELE 135 (758)
T ss_pred EEEEEEEEhhhC
Confidence 999999999875
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.18 E-value=5.6e-12 Score=103.36 Aligned_cols=91 Identities=29% Similarity=0.378 Sum_probs=79.7
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE--------EeeeeeeCCCCCeEecEEEEEEeCC-----CCcEEEE
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--------LKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLT 69 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~--------~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~l~i~ 69 (164)
+-.+|.|.|+.|+++.+.+ +|-+||||++.+.+. ++|++..+|+||+|+|+|.|.+... ...+.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 3456778889999999999 999999999999863 9999999999999999999999632 3459999
Q ss_pred EEeCCCCCCCceeEEEEEechhhhh
Q 031204 70 VYDKDTFSLDDKMGDAEFYITPFLE 94 (164)
Q Consensus 70 v~d~~~~~~~~~lG~~~v~l~~l~~ 94 (164)
|+|+|-.+.+||-|++.+.|+++..
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999988754
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.15 E-value=5.9e-12 Score=103.22 Aligned_cols=88 Identities=26% Similarity=0.445 Sum_probs=71.1
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECC------------------------------E--EeeeeeeCCCCCeEecE
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------------------------------Q--LKTRVVKNNVNPEWNED 54 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~------------------------------~--~~T~~~~~t~~P~w~e~ 54 (164)
+.|.+.+|++|.+++ +|.+|||+...+-. . +-|.+.++|+||.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 446667899999999 89999999986531 1 45788888999999999
Q ss_pred EEEEEeCCC-CcEEEEEEeCCC---------------------------------CCC---CceeEEEEEechhhhhh
Q 031204 55 LTLSISDSN-LPIKLTVYDKDT---------------------------------FSL---DDKMGDAEFYITPFLEA 95 (164)
Q Consensus 55 ~~f~~~~~~-~~l~i~v~d~~~---------------------------------~~~---~~~lG~~~v~l~~l~~~ 95 (164)
|.|.+.+-. ..+++.|||+|. .+. |||+|++.+++.++...
T Consensus 196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~ 273 (1103)
T KOG1328|consen 196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD 273 (1103)
T ss_pred eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc
Confidence 999998754 569999999884 123 78999999999888654
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.88 E-value=3.9e-09 Score=86.63 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=72.2
Q ss_pred EEeEcCCCCCCCCCCcEEEEEECCE-----EeeeeeeCCCCCeEecEEEEEEeCC---------------C-CcEEEEEE
Q 031204 13 LRGVNLAVRDVVSSDPYVVIKMGKQ-----LKTRVVKNNVNPEWNEDLTLSISDS---------------N-LPIKLTVY 71 (164)
Q Consensus 13 ~~a~~L~~~~~~~~dpyv~v~~~~~-----~~T~~~~~t~~P~w~e~~~f~~~~~---------------~-~~l~i~v~ 71 (164)
+.++.+-+..++.+|||+++...+. .+|++.++|.+|.|+|.|.|.+..+ + ..|++++|
T Consensus 138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW 217 (800)
T KOG2059|consen 138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW 217 (800)
T ss_pred hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence 4455555555678999999998765 5999999999999999999998643 1 34889999
Q ss_pred e-CCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCC
Q 031204 72 D-KDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR 116 (164)
Q Consensus 72 d-~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~ 116 (164)
+ ++....++|+|++.+++..+...... ..|+-++|.+
T Consensus 218 ~~~~~~~~~~FlGevrv~v~~~~~~s~p--------~~W~~Lqp~~ 255 (800)
T KOG2059|consen 218 NDLNLVINDVFLGEVRVPVDVLRQKSSP--------AAWYYLQPRP 255 (800)
T ss_pred cchhhhhhhhhceeEEeehhhhhhccCc--------cceEEEecCC
Confidence 9 55555799999999999887743221 3456666653
No 119
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.79 E-value=3.7e-09 Score=89.46 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=77.5
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE---EeeeeeeCCCCCeEecEEEEEEeCCCC-cEEEEEEeCCCCCCCce
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ---LKTRVVKNNVNPEWNEDLTLSISDSNL-PIKLTVYDKDTFSLDDK 81 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~---~~T~~~~~t~~P~w~e~~~f~~~~~~~-~l~i~v~d~~~~~~~~~ 81 (164)
.++|+|++|-+|.+.| +|..|||+.+.+++. -++..+.+|+||+|.+-|.+...-+.. .+.++|||+|..+.|+.
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~ 693 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEK 693 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccch
Confidence 4679999999999999 999999999999987 788889999999999999999877654 48999999999999999
Q ss_pred eEEEEEechh
Q 031204 82 MGDAEFYITP 91 (164)
Q Consensus 82 lG~~~v~l~~ 91 (164)
+|+..+++++
T Consensus 694 iget~iDLEn 703 (1105)
T KOG1326|consen 694 IGETTIDLEN 703 (1105)
T ss_pred hhceehhhhh
Confidence 9999999876
No 120
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-08 Score=88.01 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=78.9
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEe
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYD 72 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d 72 (164)
..|+|+|-|.-|++|+-.. +..+||||++++.+. .+|+++++|.+|.|||.+.+.-.. ..+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 3588999999999996555 668999999999742 999999999999999999887432 13569999999
Q ss_pred CCCCCCCceeEEEEEechhhhhhhc
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~~~ 97 (164)
.+....+.++|.+.++|.++...++
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE 1626 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKE 1626 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhh
Confidence 9998889999999999988766543
No 121
>PLN02964 phosphatidylserine decarboxylase
Probab=98.50 E-value=2.5e-07 Score=77.09 Aligned_cols=89 Identities=17% Similarity=0.383 Sum_probs=73.5
Q ss_pred CCcccEEEEEEEEEeEcCCCCCCCCCCcEEEEE-ECCE-EeeeeeeCCCCCeEecEEEEEEeCCCC-cEEEEEEeCCCCC
Q 031204 1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIK-MGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNL-PIKLTVYDKDTFS 77 (164)
Q Consensus 1 ~~~~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~-~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~-~l~i~v~d~~~~~ 77 (164)
+++..|...+++++|+ ++ -.|+|+.+- ++.+ ++|...++|.||+||+...|.+...+. ...|.|||.+.++
T Consensus 49 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 4678899999999987 32 348887754 5566 999999999999999999999975433 3699999999999
Q ss_pred CCceeEEEEEechhhhhh
Q 031204 78 LDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l~~~ 95 (164)
.++++|.+.+++.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999988776654
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=6.5e-07 Score=68.09 Aligned_cols=86 Identities=29% Similarity=0.359 Sum_probs=72.3
Q ss_pred ccEEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031204 4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK 73 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~---~~l~i~v~d~ 73 (164)
....|.|+++++..|..++ ++.+|||+..++... .+|.+.+++.+|.|+++|.|.+.+.+ ..+.|.|||.
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 3456789999999999999 899999999998632 89999999999999999999997543 4689999999
Q ss_pred CCCCCCceeEEEEEec
Q 031204 74 DTFSLDDKMGDAEFYI 89 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l 89 (164)
+.-+..+++|-....+
T Consensus 311 ~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGG 326 (362)
T ss_pred CCCcCccCCCcccccc
Confidence 9887888888755543
No 123
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=4.8e-07 Score=68.78 Aligned_cols=91 Identities=23% Similarity=0.339 Sum_probs=75.4
Q ss_pred EEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031204 6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD 74 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~ 74 (164)
..+..++.+|.+|.+++ .+..|||++..+... .+|++..++.||.|+|+.....-.. ...+.+.|.|.+
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 35678999999999999 889999999998753 7888999999999999877765321 234788999999
Q ss_pred CCCCCceeEEEEEechhhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
.+...+++|+..+++..+....
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q 194 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQ 194 (362)
T ss_pred ccccccCcccchhhhhccChhh
Confidence 9988999999999888776654
No 124
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.14 E-value=3.9e-06 Score=52.23 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=64.7
Q ss_pred EEEEEEeEcCCCCC--CCCCCcEEEE--EECCE--EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCCCCC
Q 031204 9 RVHVLRGVNLAVRD--VVSSDPYVVI--KMGKQ--LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTFSLD 79 (164)
Q Consensus 9 ~v~v~~a~~L~~~~--~~~~dpyv~v--~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~~~~ 79 (164)
-++++.+++|.-.. ...+.-|++- .+.+. .+|.+.....||.|.|+|.|.+.. ++-.|-|.|++ ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 37889999987665 2244455553 33444 899999999999999999999853 34468899999 34478
Q ss_pred ceeEEEEEechhhhhhh
Q 031204 80 DKMGDAEFYITPFLEAL 96 (164)
Q Consensus 80 ~~lG~~~v~l~~l~~~~ 96 (164)
..||.+.+.++++-.+.
T Consensus 80 e~iG~~sL~l~s~geeE 96 (103)
T cd08684 80 RTIGECSLSLRTLSTQE 96 (103)
T ss_pred ceeeEEEeecccCCHHH
Confidence 89999999998876654
No 125
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.11 E-value=7.7e-06 Score=66.30 Aligned_cols=81 Identities=35% Similarity=0.615 Sum_probs=67.8
Q ss_pred EEeEcCCCCC-CCCCCcEEEEEEC--C---E--EeeeeeeCCCCCeEecEEEEEEe-----CCCCcEEEEEEeCCCCCCC
Q 031204 13 LRGVNLAVRD-VVSSDPYVVIKMG--K---Q--LKTRVVKNNVNPEWNEDLTLSIS-----DSNLPIKLTVYDKDTFSLD 79 (164)
Q Consensus 13 ~~a~~L~~~~-~~~~dpyv~v~~~--~---~--~~T~~~~~t~~P~w~e~~~f~~~-----~~~~~l~i~v~d~~~~~~~ 79 (164)
.+|++|.+++ ++++|||..++-- . . ++|.+++++++|.|.+ |.+... +++..+.+.+||.+..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 4678898888 8999999998743 1 1 9999999999999998 555542 3457799999999999899
Q ss_pred ceeEEEEEechhhhh
Q 031204 80 DKMGDAEFYITPFLE 94 (164)
Q Consensus 80 ~~lG~~~v~l~~l~~ 94 (164)
+++|.+..++..+..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999988865
No 126
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.08 E-value=1.4e-05 Score=53.37 Aligned_cols=89 Identities=25% Similarity=0.397 Sum_probs=67.3
Q ss_pred EEEEEEEeEcCCCCC--------------CCCCCcEEEEEEC--C--E-EeeeeeeCCCCCeEecEEEEEEe-----CC-
Q 031204 8 LRVHVLRGVNLAVRD--------------VVSSDPYVVIKMG--K--Q-LKTRVVKNNVNPEWNEDLTLSIS-----DS- 62 (164)
Q Consensus 8 L~v~v~~a~~L~~~~--------------~~~~dpyv~v~~~--~--~-~~T~~~~~t~~P~w~e~~~f~~~-----~~- 62 (164)
|.|.|.+|.+|+... .-.-|+|+++.+. + . .+|+++-++.-|.|+..+.|.+. +.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888887322 1135899999854 2 2 99999999999999999999874 11
Q ss_pred ----------CCcEEEEEEeCCCC----------CCCceeEEEEEechhhhhhh
Q 031204 63 ----------NLPIKLTVYDKDTF----------SLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 63 ----------~~~l~i~v~d~~~~----------~~~~~lG~~~v~l~~l~~~~ 96 (164)
...+.|+||+...- .+|-+||.+.||+.++....
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 24689999996542 24558999999999988754
No 127
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=4e-06 Score=64.86 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=76.3
Q ss_pred ccEEEEEEEEEeEcCCCCC--CCCCCcEEEEEECCE------EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEe-CC
Q 031204 4 LMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ------LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYD-KD 74 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~--~~~~dpyv~v~~~~~------~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d-~~ 74 (164)
..|.+.|.|++|++|..+. ...++||++|++... .+|+...+|.+|.+-+...|.-..+...|.++||. ..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 5789999999999999877 347899999998642 88999999999988888888888778889999996 55
Q ss_pred CCCCCceeEEEEEechhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~ 95 (164)
++..+.|+|.+++-+.++-..
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls 367 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLS 367 (405)
T ss_pred ccchHHHhhHHHHHhhhhccc
Confidence 666778999988888776543
No 128
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=7.2e-05 Score=62.03 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=71.7
Q ss_pred EEEEEEEEeEcCCCCCCCCCCcEEEEEECCE--------EeeeeeeCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031204 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ--------LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD 74 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~--------~~T~~~~~t~~P~w~e~~~f~~~~~~----~~l~i~v~d~~ 74 (164)
.++|.|+.|.+|.-...|...||+.+.+.+. +.|+...++-.|.+||+|.|.+.+.+ -.|.+.|-|..
T Consensus 1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence 4677888999988766778899999987531 66777777888999999999986532 34888888877
Q ss_pred CCCCCceeEEEEEechhhhhhh
Q 031204 75 TFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 75 ~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
-...|..+|-+.++|.++...+
T Consensus 1206 FAReDRvvGl~VlqL~~va~kG 1227 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKG 1227 (1283)
T ss_pred eecccceeeeeeeehhhHhhcC
Confidence 6556779999999999988753
No 129
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.73 E-value=3.7e-05 Score=60.43 Aligned_cols=92 Identities=26% Similarity=0.446 Sum_probs=69.5
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---E-EeeeeeeCCCCCeEecEEEEEEeCC---C---------CcEE
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---Q-LKTRVVKNNVNPEWNEDLTLSISDS---N---------LPIK 67 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~-~~T~~~~~t~~P~w~e~~~f~~~~~---~---------~~l~ 67 (164)
.|.+.|+++.+++... ....|-|+.+.+. + + .+|.+++.|.+|.|+|.|.+.+... + ..++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 3556677777776544 2245778888764 2 3 8999999999999999999998641 1 3589
Q ss_pred EEEEeCCCCC-CCceeEEEEEechhhhhhhcc
Q 031204 68 LTVYDKDTFS-LDDKMGDAEFYITPFLEALKM 98 (164)
Q Consensus 68 i~v~d~~~~~-~~~~lG~~~v~l~~l~~~~~~ 98 (164)
|++|+...+- +|.++|.+.+.+..+....+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei 479 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEI 479 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccch
Confidence 9999988764 677999999999888766544
No 130
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.66 E-value=7.1e-06 Score=70.21 Aligned_cols=82 Identities=24% Similarity=0.364 Sum_probs=67.2
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC----C-----CC-cEEEEEEeCCC
Q 031204 8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD----S-----NL-PIKLTVYDKDT 75 (164)
Q Consensus 8 L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~----~-----~~-~l~i~v~d~~~ 75 (164)
+++.|.+|+.|...+ .+.+|||+.+.+.++ +.|.++.+|++|.|+++..|.-.. + +- .+.+++||.++
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr 287 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR 287 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence 455666788888887 678999999999999 999999999999999999886321 1 12 37899999999
Q ss_pred CCCCceeEEEEEec
Q 031204 76 FSLDDKMGDAEFYI 89 (164)
Q Consensus 76 ~~~~~~lG~~~v~l 89 (164)
.+.++|+|+.....
T Consensus 288 ~g~~ef~gr~~~~p 301 (1105)
T KOG1326|consen 288 SGINEFKGRKKQRP 301 (1105)
T ss_pred hchHHhhcccccce
Confidence 99999999876543
No 131
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.52 E-value=0.002 Score=45.65 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=66.8
Q ss_pred EEEEEEEEEeEcCCCCCCCCCCcEEEEE--ECCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeCC
Q 031204 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIK--MGKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDKD 74 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~--~~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~ 74 (164)
..+.|+|..+.++...+ ...+-|+.+. .+++ ..|+...-..++.|||.+.|++.- | +..|.|+||+..
T Consensus 8 ~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 8 EKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 46889999999997622 3455676654 3444 456555545679999999998752 2 456999999865
Q ss_pred CCC----------------CCceeEEEEEechhhhhhhcccccCCCCceEEEEecc
Q 031204 75 TFS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP 114 (164)
Q Consensus 75 ~~~----------------~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~ 114 (164)
... .+..||.+.++|-+... .|..|.....+-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~-------~Lr~G~~~L~lW~ 135 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG-------QLKTGDHTLYMWT 135 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcccc-------hhhcCCeEEEecC
Confidence 321 24689999999876433 3445654444333
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.42 E-value=0.0031 Score=44.01 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=66.3
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK 73 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~ 73 (164)
...++|+|+++.++.... .++-|+.+.+ +++ ..|+.+.. .++.|||.+.|++.- + +..|.|+||+.
T Consensus 7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 346889999999887643 4577777754 443 34444443 679999999998852 2 45699999996
Q ss_pred CCCC----CCceeEEEEEechhhhhhhcccccCCCCceEEEEecc
Q 031204 74 DTFS----LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP 114 (164)
Q Consensus 74 ~~~~----~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~ 114 (164)
.... ....+|.+.++|-+... .+..|.....+-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~-------~Lr~G~~~L~lW~ 121 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTD-------TLVSGKMALNLWP 121 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCC-------hhhCCCEEEEEEc
Confidence 5321 22479999999877332 3455655444444
No 133
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.30 E-value=0.0055 Score=42.52 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=66.6
Q ss_pred cEEEEEEEEEeEcCCCCCC---CCCCcEEE--EEECCE-EeeeeeeCCCCCeEecEEEEEEeCC--------------CC
Q 031204 5 MGLLRVHVLRGVNLAVRDV---VSSDPYVV--IKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDS--------------NL 64 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~---~~~dpyv~--v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~--------------~~ 64 (164)
.-.|+++|..++-+..... +..+.... +.+.+| ++|+.+..+.+|.|+|.|-|++... ..
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 3457888888774432221 34444444 445678 9999999999999999999998532 14
Q ss_pred cEEEEEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204 65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
++++.|...+..+...++|.-.++...+....
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~ 119 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG 119 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence 68888888887766689999888887776654
No 134
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.26 E-value=0.0033 Score=43.73 Aligned_cols=87 Identities=21% Similarity=0.262 Sum_probs=59.6
Q ss_pred EEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeCC
Q 031204 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDKD 74 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~ 74 (164)
..++|.+....+....+....+-|+.+.+ ++. ..|.......++.|||.+.|++.- | +..|.|++|+..
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 45778888888776522334566666644 443 344444334689999999998742 2 456999999976
Q ss_pred CCC--CCceeEEEEEechhh
Q 031204 75 TFS--LDDKMGDAEFYITPF 92 (164)
Q Consensus 75 ~~~--~~~~lG~~~v~l~~l 92 (164)
..+ .+..||.+.+++-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 467999999999764
No 135
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.16 E-value=0.0011 Score=56.85 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=66.7
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------E-EeeeeeeC-CCCCeEec-EEEEEE-eCCC-CcEEEEEEe
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------Q-LKTRVVKN-NVNPEWNE-DLTLSI-SDSN-LPIKLTVYD 72 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~-------~-~~T~~~~~-t~~P~w~e-~~~f~~-~~~~-~~l~i~v~d 72 (164)
.+++.|+|+++.-|..+. ...||.|.+-+ . ++|++... +.||+|+| .|.|.- --++ ..|.|.||+
T Consensus 702 A~t~sV~VISgqFLSdrk---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred EeeEEEEEEeeeeccccc---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 467999999999998664 45899999753 1 78888776 89999995 477763 3344 569999999
Q ss_pred CCCCCCCceeEEEEEechhhhhhhc
Q 031204 73 KDTFSLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 73 ~~~~~~~~~lG~~~v~l~~l~~~~~ 97 (164)
.+ ..+||+-.++++.+..+..
T Consensus 779 Eg----gK~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred cC----CceeeeeccchhcccCcce
Confidence 75 3699999999988877654
No 136
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.14 E-value=0.0058 Score=38.41 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhh
Q 031204 24 VSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPF 92 (164)
Q Consensus 24 ~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l 92 (164)
|..+..+++.+++. .+|.-... .+..|++.|.|++. ..+.|.|.||-+|- ..+-|-..+.|++.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 45788899999986 77765444 47899999999997 45679999998863 45677777888774
No 137
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.10 E-value=0.00088 Score=51.23 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=60.9
Q ss_pred cccEEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031204 3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS 77 (164)
Q Consensus 3 ~~~g~L~v~v~~a~~L~~~~---~~~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~ 77 (164)
...|.|.+++..+++|.-.. +-.-+-||++..+.+ .+|.+......=.|.|+|...+.+ ...+.+-||.|+.-.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 35689999999999998654 336789999999988 777776666667888999888763 345888999988766
Q ss_pred CCcee
Q 031204 78 LDDKM 82 (164)
Q Consensus 78 ~~~~l 82 (164)
++.+.
T Consensus 127 RHKLC 131 (442)
T KOG1452|consen 127 RHKLC 131 (442)
T ss_pred hcccc
Confidence 66543
No 138
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.99 E-value=0.015 Score=41.46 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=63.3
Q ss_pred EEEEEEEEEeEcCCCCCCCCCCcEEEEE--ECCE----EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCCC
Q 031204 6 GLLRVHVLRGVNLAVRDVVSSDPYVVIK--MGKQ----LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKDT 75 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~~~~~dpyv~v~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~~ 75 (164)
..++|+|..+.++.........-|+.+. .+++ .+|....-+.+|.|||.+.|++.- ....|.|+||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 3577888888643222222333555553 3444 456655556789999999999853 24569999998532
Q ss_pred CC----------------CCceeEEEEEechhhhhhhcccccCCCCceEEEEeccC
Q 031204 76 FS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS 115 (164)
Q Consensus 76 ~~----------------~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~ 115 (164)
.. .+..||.+.+.|-+... .|+.|.....+-|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~-------~Lr~G~~~L~~W~~ 138 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF-------LLRTGEYVLHMWQI 138 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC-------ceecCCEEEEEecC
Confidence 11 25688888888866332 45566665555553
No 139
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.95 E-value=0.0041 Score=43.47 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=51.6
Q ss_pred CCCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC----CCCcEEEEEEeCCCCCCCceeEEEEEechhh
Q 031204 24 VSSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKDTFSLDDKMGDAEFYITPF 92 (164)
Q Consensus 24 ~~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~----~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l 92 (164)
..++-|+.+.+ ++. .+|....-+..+.|||...|++.- .+..|.|+||+....+....+|.+.+++-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 35677888765 333 466655556779999999999853 2456999999987655677999999998764
No 140
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.92 E-value=0.017 Score=40.84 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=61.2
Q ss_pred cEEEEEEEEEeEcCCCCC-CCCCCcEEEEEE--CCE-----Eeeeeee--C--CCCCeEecEEEEEEeC---C-CCcEEE
Q 031204 5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM--GKQ-----LKTRVVK--N--NVNPEWNEDLTLSISD---S-NLPIKL 68 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~-~~~~dpyv~v~~--~~~-----~~T~~~~--~--t~~P~w~e~~~f~~~~---~-~~~l~i 68 (164)
...+.|+|.++.+++..- ....+-|+.+.+ +++ ..|+... + ...+.|||.+.|++.- | +..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 456889999999998654 335677777754 444 3444322 1 2357899999998852 2 356999
Q ss_pred EEEeCCCCC---------CCceeEEEEEechhh
Q 031204 69 TVYDKDTFS---------LDDKMGDAEFYITPF 92 (164)
Q Consensus 69 ~v~d~~~~~---------~~~~lG~~~v~l~~l 92 (164)
++|+..... .+..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999966543 356999999998774
No 141
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.79 E-value=0.039 Score=43.27 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=68.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC--------CCCcEEEEEEeCC-CCC
Q 031204 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD--------SNLPIKLTVYDKD-TFS 77 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~--------~~~~l~i~v~d~~-~~~ 77 (164)
+.|.|++|+|++... ...-.+..++++. ..|..+..+..|.||..+..++.. .+.+|++++|..+ ..+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 678999999998652 4456777888888 999988889999999999998842 2356999999988 556
Q ss_pred CCceeEEEEEechhh
Q 031204 78 LDDKMGDAEFYITPF 92 (164)
Q Consensus 78 ~~~~lG~~~v~l~~l 92 (164)
..+.+|.+-++|...
T Consensus 80 ~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 80 KRESIGYVVLDLRSA 94 (340)
T ss_pred cceeccEEEEEcccc
Confidence 788999999999877
No 142
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.41 E-value=0.029 Score=38.36 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=39.7
Q ss_pred eeeeeeCC-CCCeEecEEEEEEeC---C-CCcEEEEEEeCCCCCCC----ceeEEEEEechhh
Q 031204 39 KTRVVKNN-VNPEWNEDLTLSISD---S-NLPIKLTVYDKDTFSLD----DKMGDAEFYITPF 92 (164)
Q Consensus 39 ~T~~~~~t-~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~~~~~~----~~lG~~~v~l~~l 92 (164)
.|....-+ .++.|+|.+.|++.- | +..|.|+||........ ..||.+.+++-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56666655 799999999999852 3 45699999997765444 6999999999775
No 143
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.37 E-value=0.17 Score=34.30 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=60.1
Q ss_pred ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECCE----EeeeeeeC-CCCCeEecEEEEEEe---CC------CCcEEEE
Q 031204 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ----LKTRVVKN-NVNPEWNEDLTLSIS---DS------NLPIKLT 69 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~----~~T~~~~~-t~~P~w~e~~~f~~~---~~------~~~l~i~ 69 (164)
..-.+.+.|.+..+++. .....|+.+..+.. .+|..... ...-.|++.|.+.+. +. ...+.|.
T Consensus 5 ~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 34467889999998875 23445666666543 34443333 455899999999874 11 1348899
Q ss_pred EEeCCCCCCCceeEEEEEechhhhhh
Q 031204 70 VYDKDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 70 v~d~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
|+....-++...+|.+.++|++....
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCc
Confidence 99875333336999999999998775
No 144
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=96.00 E-value=0.33 Score=34.19 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCCcEEEEEECCE--EeeeeeeCC--CCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhh
Q 031204 25 SSDPYVVIKMGKQ--LKTRVVKNN--VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE 94 (164)
Q Consensus 25 ~~dpyv~v~~~~~--~~T~~~~~t--~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~ 94 (164)
...-|+++.++++ .+|+...-+ ..-.|++.|.+.+...-..|.++||.... ..+..|+.+.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 4567999999987 777665543 33667899999987656679999999987 488999999999865443
No 145
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.42 E-value=0.074 Score=43.80 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=50.3
Q ss_pred EeeeeeeCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCC----CCCceeEEEEEechhhhhhhcc
Q 031204 38 LKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTF----SLDDKMGDAEFYITPFLEALKM 98 (164)
Q Consensus 38 ~~T~~~~~t~~P~w~e~~~f~~~~-~~~~l~i~v~d~~~~----~~~~~lG~~~v~l~~l~~~~~~ 98 (164)
.+|.++.+.+||.|.+.|.+.... ..+.+.+++++.+.. ..++|+|++...+..+......
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~ 108 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL 108 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence 689999999999999998887653 356799999997643 4678999999999998876554
No 146
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.92 E-value=0.27 Score=31.45 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=43.5
Q ss_pred EEEEEEEeEcCCCCCCC-CCCcEEEEEE--CCE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeCC
Q 031204 8 LRVHVLRGVNLAVRDVV-SSDPYVVIKM--GKQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDKD 74 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~-~~dpyv~v~~--~~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~~ 74 (164)
+.+.+....+....... ..+-|+.+.+ ++. ..|....-...+.|||...|++.- | +..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 55666666665544322 2477888754 444 455555445669999999998752 2 456999999854
No 147
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=94.66 E-value=0.31 Score=31.77 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=37.2
Q ss_pred EEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCC--------CCcEEEEEEeCCCCCCCceeEEEEEechhhhhhhc
Q 031204 29 YVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDS--------NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALK 97 (164)
Q Consensus 29 yv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~--------~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~ 97 (164)
||.+.+-.- +.|.++. +.+|.+|-+-.|.+... ...+.++++..-.. ....+|.+++++..+.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCC
Confidence 566665544 7777776 77999999988888632 25699999987633 46799999999999986543
No 148
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.64 E-value=0.95 Score=32.57 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=40.3
Q ss_pred EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCCCC--CceeEEEEEech
Q 031204 38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTFSL--DDKMGDAEFYIT 90 (164)
Q Consensus 38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~~~--~~~lG~~~v~l~ 90 (164)
++|-+.....+|.|+|++.+.+.. .+.-|.|++++.....+ ...+|-+.++|-
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 889999989999999999999863 23458888888554321 257888888873
No 149
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.57 E-value=0.58 Score=33.82 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=40.0
Q ss_pred EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCCC-C---CceeEEEEEech
Q 031204 38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTFS-L---DDKMGDAEFYIT 90 (164)
Q Consensus 38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~~-~---~~~lG~~~v~l~ 90 (164)
++|-+.....+|.|+|++.+.+.. .+.-|.|++++..... + ...+|-+.++|-
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 888888889999999999998853 2445899998865321 2 247888888874
No 150
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.07 E-value=0.25 Score=35.20 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=33.5
Q ss_pred EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCC---CceeEEEEEechh
Q 031204 38 LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSL---DDKMGDAEFYITP 91 (164)
Q Consensus 38 ~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~~---~~~lG~~~v~l~~ 91 (164)
+.|.+...+.+|.|+|+|.+.+... +.-|.|++++...-.+ ...+|.+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 7788888889999999999998643 3448999999654322 2699999999976
No 151
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=91.20 E-value=0.3 Score=42.59 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=59.9
Q ss_pred CCcEEEEEECCE--EeeeeeeCC-CCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhhhh
Q 031204 26 SDPYVVIKMGKQ--LKTRVVKNN-VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEA 95 (164)
Q Consensus 26 ~dpyv~v~~~~~--~~T~~~~~t-~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~ 95 (164)
.++|+.+.+... .+|....+. .+|.|.+.|...+......+.+.+-+.+..+....+|.+.++...+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 488999998876 888888776 7899999998888877788999999988887678999999999888775
No 152
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=90.40 E-value=4.7 Score=28.32 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=76.9
Q ss_pred EEEEEEeEcCCCCCCCCCCcEEEEEEC--C----------EEeeeeeeC-----CCCCeEecEEEEEEeC--CC--CcEE
Q 031204 9 RVHVLRGVNLAVRDVVSSDPYVVIKMG--K----------QLKTRVVKN-----NVNPEWNEDLTLSISD--SN--LPIK 67 (164)
Q Consensus 9 ~v~v~~a~~L~~~~~~~~dpyv~v~~~--~----------~~~T~~~~~-----t~~P~w~e~~~f~~~~--~~--~~l~ 67 (164)
.=.|..|.+.. ..+-||+..+. . ...|.+... ...-.||.-|.+.+.. +. -.|.
T Consensus 5 ~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 5 IGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 34677888754 45779988763 1 144555443 2346788888777753 22 2499
Q ss_pred EEEEeCCCCCCCceeEEEEEechhhhhhhcccccCCCCceEEEEeccCCCcccc-ccceeEeeCCeEE-------EEEeE
Q 031204 68 LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLA-EESHIVWTDGKLV-------QNLFL 139 (164)
Q Consensus 68 i~v~d~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~-------~~~~~ 139 (164)
|+||..|..+++...|-..+.+-.-..... ..+..|.|....... -.+.+.-..-++. .+..+
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~---------~~v~~wrP~~~s~~~~l~~~f~G~~pel~d~~~~~~~~~R~ 150 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLPTQPGRHE---------VEVPTWRPVSGSIRQELRSFFVGGRPELVDPDFIASGESRF 150 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeCCCCceEE---------EEEEEEeecCCCHHHHhhhheecCCceEcCcchhcCccccc
Confidence 999999999999999887777633211111 235566663333221 1111111111111 23334
Q ss_pred EecccceeeEEEEEEEE
Q 031204 140 RLRNVEVGEVKIQLEWI 156 (164)
Q Consensus 140 ~l~~~~~G~l~l~l~~~ 156 (164)
.++....|.|+|+|.-+
T Consensus 151 ~l~t~s~G~V~v~l~vi 167 (168)
T PF07162_consen 151 GLRTESSGSVKVRLNVI 167 (168)
T ss_pred CcEEEeeeEEEEEEEEe
Confidence 56666789999998754
No 153
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=90.26 E-value=1.4 Score=31.24 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=38.3
Q ss_pred EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCC-----CCCceeEEEEEechh
Q 031204 38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTF-----SLDDKMGDAEFYITP 91 (164)
Q Consensus 38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~-----~~~~~lG~~~v~l~~ 91 (164)
++|-+..+ .+|.|+|++.+.+.. +..-|.|++++...- .....+|-+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 899999999998853 234599999996532 235689999999865
No 154
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.92 E-value=0.13 Score=43.57 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=46.9
Q ss_pred CCCcEEEEEECCE--EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechhhh
Q 031204 25 SSDPYVVIKMGKQ--LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL 93 (164)
Q Consensus 25 ~~dpyv~v~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~l~ 93 (164)
..+||+.+.+.-. ..+.+...+..|.|+++|.+++. .+..+.|.|+.......+.+...+++..+++.
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 4588999988754 55556677899999999999976 45568889988765444444444444443333
No 155
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=89.74 E-value=1.8 Score=30.88 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=40.6
Q ss_pred EeeeeeeCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCC------CCceeEEEEEechh
Q 031204 38 LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFS------LDDKMGDAEFYITP 91 (164)
Q Consensus 38 ~~T~~~~~t~~P~w~e~~~f~~~~~---~~~l~i~v~d~~~~~------~~~~lG~~~v~l~~ 91 (164)
+.|.+...+.+|.|+|++.+.+... ..-|.|+.++.+.-. ....+|-+.++|-.
T Consensus 56 ~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 56 AYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred EEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 8888999999999999999888532 345889999844321 23579999998854
No 156
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=88.73 E-value=2.7 Score=30.15 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=40.8
Q ss_pred EeeeeeeCCCCCeEecEEEEEEeC---CCCcEEEEEEeCCCC--C-------CCceeEEEEEechh
Q 031204 38 LKTRVVKNNVNPEWNEDLTLSISD---SNLPIKLTVYDKDTF--S-------LDDKMGDAEFYITP 91 (164)
Q Consensus 38 ~~T~~~~~t~~P~w~e~~~f~~~~---~~~~l~i~v~d~~~~--~-------~~~~lG~~~v~l~~ 91 (164)
+.|.+...+.+|.|.|++.+.+.. ...-|.|+.++...- . ....+|-+.++|-.
T Consensus 58 ~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 58 AYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 888899999999999999988852 234589999986521 1 23578999999865
No 157
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=88.16 E-value=12 Score=29.79 Aligned_cols=66 Identities=11% Similarity=0.262 Sum_probs=46.9
Q ss_pred CCCcEEEEEECCE-EeeeeeeCCCCCe--EecEEEEEEeCCCCcEEEEEEeCCCCCCCceeEEEEEechh
Q 031204 25 SSDPYVVIKMGKQ-LKTRVVKNNVNPE--WNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 25 ~~dpyv~v~~~~~-~~T~~~~~t~~P~--w~e~~~f~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~l~~ 91 (164)
....|+.+..+.. .+|..+.-+..-. -.++....+..-+.+|++.+|-.... +...||.+.+.+..
T Consensus 73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~ 141 (508)
T PTZ00447 73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINA 141 (508)
T ss_pred ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccH
Confidence 3467888888877 7775554433322 33555666665667899999999877 77899999999875
No 158
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=82.20 E-value=26 Score=28.55 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=39.1
Q ss_pred CCCcEEEEEECCE-EeeeeeeC--CCCCeE---e-cEEEEEEe--------CC------CCcEEEEEEeCCC-----C-C
Q 031204 25 SSDPYVVIKMGKQ-LKTRVVKN--NVNPEW---N-EDLTLSIS--------DS------NLPIKLTVYDKDT-----F-S 77 (164)
Q Consensus 25 ~~dpyv~v~~~~~-~~T~~~~~--t~~P~w---~-e~~~f~~~--------~~------~~~l~i~v~d~~~-----~-~ 77 (164)
.+.+||+|++.+- .+|..+.- ..++.- + ---.|.+. .+ ...|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4578999999886 55554432 111111 1 11234332 11 1459999998332 2 3
Q ss_pred CCceeEEEEEech
Q 031204 78 LDDKMGDAEFYIT 90 (164)
Q Consensus 78 ~~~~lG~~~v~l~ 90 (164)
+..+||.+.++++
T Consensus 115 ~~klLG~v~vpld 127 (460)
T PF06219_consen 115 SGKLLGKVRVPLD 127 (460)
T ss_pred cceEEEEEEEEec
Confidence 5679999999986
No 159
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=81.71 E-value=11 Score=33.46 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=51.4
Q ss_pred EEEEEEEEeEcCCCCCCCCCCcEEEEEEC----CE-----EeeeeeeCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031204 7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQ-----LKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK 73 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~~~~~dpyv~v~~~----~~-----~~T~~~~~t~~P~w~e~~~f~~~~---~-~~~l~i~v~d~ 73 (164)
-+.|+++.+.++... ...|-++.+..+ .+ ..|.-+....+|.||+.+.|.+.- | ...|.|.||.-
T Consensus 344 ~frI~l~~is~~n~~--~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNLP--ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred ceEEEEeeccccCCC--cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 466777776654322 244566666543 33 344444447789999999998852 2 34588888864
Q ss_pred C----------------CCCCCceeEEEEEechhhhh
Q 031204 74 D----------------TFSLDDKMGDAEFYITPFLE 94 (164)
Q Consensus 74 ~----------------~~~~~~~lG~~~v~l~~l~~ 94 (164)
. .-+.+..+|.+.+.+-+...
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd 458 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKD 458 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeechh
Confidence 1 11234467777776655443
No 160
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.86 E-value=9.7 Score=25.74 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=41.1
Q ss_pred EEEEeEcCCCCCCCCCCcEEEEEEC--C-------E--EeeeeeeC--CCCCeEecEEEEEEeCC---C-CcEEEEEEeC
Q 031204 11 HVLRGVNLAVRDVVSSDPYVVIKMG--K-------Q--LKTRVVKN--NVNPEWNEDLTLSISDS---N-LPIKLTVYDK 73 (164)
Q Consensus 11 ~v~~a~~L~~~~~~~~dpyv~v~~~--~-------~--~~T~~~~~--t~~P~w~e~~~f~~~~~---~-~~l~i~v~d~ 73 (164)
.|+.|+++ +....||+..+- . . .+|.+-.. ..+..|.....+.+... + ..|.++||++
T Consensus 9 qil~a~gf-----~dn~l~~k~~i~~g~~wkllqg~~egqtq~d~pqi~d~a~~ahpidlh~at~~iqgwprl~~qiw~~ 83 (175)
T KOG4028|consen 9 QILGARGF-----GDNRLFCKWGIHFGAAWKLLQGEREGQTQTDCPQIFDMAHFAHPIDLHFATKGIQGWPRLHFQIWHH 83 (175)
T ss_pred eEeecccc-----CCCceEEEEeeeccceeeeeeccccCccccCCchhhhhhhhcCcceeeeecccccCCceeeeeeeec
Confidence 35566654 455677776542 1 1 33333222 22344544444444322 1 3599999999
Q ss_pred CCCCCCceeEEEEEec
Q 031204 74 DTFSLDDKMGDAEFYI 89 (164)
Q Consensus 74 ~~~~~~~~lG~~~v~l 89 (164)
|++++.++.|-....+
T Consensus 84 dnfgr~eiagyg~~~l 99 (175)
T KOG4028|consen 84 DNFGRCEIAGYGFCHL 99 (175)
T ss_pred CcccceeecccceEec
Confidence 9998888776644443
No 161
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=75.51 E-value=23 Score=24.23 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=52.7
Q ss_pred CCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEe-----C--------CCCcEEEEEEeCCCCCCCceeEEEEEec
Q 031204 24 VSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSIS-----D--------SNLPIKLTVYDKDTFSLDDKMGDAEFYI 89 (164)
Q Consensus 24 ~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~-----~--------~~~~l~i~v~d~~~~~~~~~lG~~~v~l 89 (164)
.+.|-|..+++.++ .+|+.....--=.++|.|.|+-. + .+..+.++++.+..- ....|+...-+.
T Consensus 18 ~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~-~g~iLA~ye~n~ 96 (140)
T PF14909_consen 18 DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPP-AGEILAYYEENT 96 (140)
T ss_pred CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCC-CCcEEEEEeccc
Confidence 36789999999999 99988766655567899999752 1 125688999887765 367888888777
Q ss_pred hhhhh
Q 031204 90 TPFLE 94 (164)
Q Consensus 90 ~~l~~ 94 (164)
.++.-
T Consensus 97 rDfLf 101 (140)
T PF14909_consen 97 RDFLF 101 (140)
T ss_pred cceEc
Confidence 77654
No 162
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.22 E-value=4 Score=34.90 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCCcEEEEEECC--E-----EeeeeeeCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCCCCceeEEEEEechh
Q 031204 25 SSDPYVVIKMGK--Q-----LKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFSLDDKMGDAEFYITP 91 (164)
Q Consensus 25 ~~dpyv~v~~~~--~-----~~T~~~~~t~~P~w~e~~~f~~~~~----~~~l~i~v~d~~~~~~~~~lG~~~v~l~~ 91 (164)
++|.|+.+.+-. . .+|..+.-+..-.|||.+++++..+ +..+.|++|+.+......++|..++.+..
T Consensus 46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 456666655432 1 4444443333345999999998643 35699999998776677899998887754
No 163
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=68.95 E-value=2.3 Score=37.47 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=55.5
Q ss_pred ccEEEEEEEEEeEcCCCCCCCCCCcEEEEEECC---E---EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCC---
Q 031204 4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK---Q---LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD--- 74 (164)
Q Consensus 4 ~~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~~---~---~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~--- 74 (164)
..|.+.+.+.+|..+.. ..+.||...+.. . .+|.++.+|..|.||+++..++.. .+...+..++.+
T Consensus 757 ~ygflh~~vhsat~lkq----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ek~~~~ 831 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTEKSTPV 831 (1112)
T ss_pred cccceeeeecccccccc----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhcccchH
Confidence 35778888888888753 356788877652 1 899999999999999999888753 223445555433
Q ss_pred -------CCCCCceeEEEEEechh
Q 031204 75 -------TFSLDDKMGDAEFYITP 91 (164)
Q Consensus 75 -------~~~~~~~lG~~~v~l~~ 91 (164)
....+...|+..+.+..
T Consensus 832 ~k~~~~~~~~~~~~~~~~~~~l~~ 855 (1112)
T KOG4269|consen 832 EKLIDSHSQNSQNEEKRSRMKLDP 855 (1112)
T ss_pred HHhhhccchhhcccccccccccCc
Confidence 22344555665555543
No 164
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=63.30 E-value=0.53 Score=39.84 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=44.8
Q ss_pred EEEEEEEEEeEcCCCCC-----CCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeC--CCCcEEEEEEeCCC
Q 031204 6 GLLRVHVLRGVNLAVRD-----VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISD--SNLPIKLTVYDKDT 75 (164)
Q Consensus 6 g~L~v~v~~a~~L~~~~-----~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~--~~~~l~i~v~d~~~ 75 (164)
|...++++.|.++++.- .-..++++...++.+ .+|+....+.+|+|||. .++..+ ....|...|.+++.
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~ 356 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE 356 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc
Confidence 34444556666654322 236789999999999 99999999999999996 555432 22334444444433
No 165
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=54.16 E-value=29 Score=20.99 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCCcEEEEEEeCCCCCCCceeEEEEEe
Q 031204 62 SNLPIKLTVYDKDTFSLDDKMGDAEFY 88 (164)
Q Consensus 62 ~~~~l~i~v~d~~~~~~~~~lG~~~v~ 88 (164)
|.....|++|+.+.+..|++++....+
T Consensus 10 P~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 10 PAKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred cCCCCEEEEEECCCCCCCceeEEEEEC
Confidence 345578999999987799999987774
No 166
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=52.45 E-value=1.2e+02 Score=24.14 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=58.8
Q ss_pred cEEEEEEEEEeEcCCCCC-------CCCCCcEEEEEECCE-EeeeeeeCCCCCeEe-cEEE-EEEeCC----------CC
Q 031204 5 MGLLRVHVLRGVNLAVRD-------VVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWN-EDLT-LSISDS----------NL 64 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~-------~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~-e~~~-f~~~~~----------~~ 64 (164)
.-.|.|++..|.||...- .+....|...++-+. ..|.......+|.+. |+-. |.+... ..
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~ 270 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIP 270 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCC
Confidence 346788888888886551 123566777777766 778877787888776 4444 665421 23
Q ss_pred cEEEEEEeCCCCCCCceeEEEEEechhhhhhh
Q 031204 65 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 96 (164)
Q Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~v~l~~l~~~~ 96 (164)
.|.|.++. .+..||.+.+++..+....
T Consensus 271 ~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 271 KLQIHLCC-----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred CeEEEEee-----CCcEEEEEEEEhhhccCCC
Confidence 46666655 4567999999999987654
No 167
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=42.17 E-value=81 Score=27.42 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=54.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCE-EeeeeeeCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC---CCCceeE
Q 031204 8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF---SLDDKMG 83 (164)
Q Consensus 8 L~v~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~l~i~v~d~~~~---~~~~~lG 83 (164)
+.|.|++.++|.... ...=.||...+.+. .+|.-.. ...|.|...=.|...++-..+++.+|..... -.|..+|
T Consensus 343 mevvvmevqglksva-pnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgvlaledkelg 420 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVA-PNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELG 420 (1218)
T ss_pred eeEEEeeeccccccC-CCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhC
Confidence 456777888887553 12236999988887 6665443 3479999887887776666678888875431 1566788
Q ss_pred EEEEec
Q 031204 84 DAEFYI 89 (164)
Q Consensus 84 ~~~v~l 89 (164)
++.+.-
T Consensus 421 rvil~p 426 (1218)
T KOG3543|consen 421 RVILQP 426 (1218)
T ss_pred eEEEec
Confidence 877754
No 168
>COG2828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.08 E-value=2.2e+02 Score=22.56 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCCCCcEEEEE-ECCE----EeeeeeeCCCCCeEecEEEEE
Q 031204 23 VVSSDPYVVIK-MGKQ----LKTRVVKNNVNPEWNEDLTLS 58 (164)
Q Consensus 23 ~~~~dpyv~v~-~~~~----~~T~~~~~t~~P~w~e~~~f~ 58 (164)
.|.+||| .+. +++. .|+-++.++..|-.+-.+.|-
T Consensus 41 mGSpdp~-QIDGiGGg~s~TSKvaIi~~S~~pd~DVDYLFg 80 (378)
T COG2828 41 MGSPDPY-QIDGIGGGNSLTSKVAIISKSSRPDHDVDYLFG 80 (378)
T ss_pred hCCCCcc-eecccCCCCcccceEEEEccccCCCCccceEEE
Confidence 4789999 333 2222 666677778888877666663
No 169
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=33.42 E-value=1.5e+02 Score=19.91 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=32.5
Q ss_pred CCCCceEEEEeccC-CCccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEecC
Q 031204 102 GLPNGTIVTKIQPS-RENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIP 159 (164)
Q Consensus 102 ~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~~ 159 (164)
.+|+|..+..|... ..+.......+..-.+...-...+.....+.+.+.+++.|..-.
T Consensus 22 lmpsG~~I~~W~S~~nyq~~r~~P~LPlLk~G~~Y~l~~~~~~~P~~svylki~F~dr~ 80 (128)
T PF15432_consen 22 LMPSGTVIHSWYSQTNYQADRTVPSLPLLKRGHTYQLKFNIDVVPENSVYLKIIFFDRQ 80 (128)
T ss_pred CCCCCCEeEEEECcceeecCCcCCCCCEecCCCEEEEEEEEEEccCCeEEEEEEEEccC
Confidence 56778777777765 22222223333333322223444455556788888888887644
No 170
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=30.96 E-value=1.6e+02 Score=19.37 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=48.6
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCE-E-eeeeeeCCCCCeE-ecEEEEEEeC---CCCcEEEEEEeCCC-CCC
Q 031204 7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-L-KTRVVKNNVNPEW-NEDLTLSISD---SNLPIKLTVYDKDT-FSL 78 (164)
Q Consensus 7 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~-~T~~~~~t~~P~w-~e~~~f~~~~---~~~~l~i~v~d~~~-~~~ 78 (164)
.|.++-+.-.+.|..+ .+..+||++++-++. . .+...... .... ...+.+.+.. -...+.|.+|+.+. ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 3445545556667654 567899999998876 3 33322111 1111 1334444331 13458899999873 336
Q ss_pred CceeEEEEEechhhh
Q 031204 79 DDKMGDAEFYITPFL 93 (164)
Q Consensus 79 ~~~lG~~~v~l~~l~ 93 (164)
.+.+.++.+.-.=+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 677888888755444
No 171
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=25.33 E-value=2.3e+02 Score=19.33 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=32.1
Q ss_pred CCCCceEEEEeccCC-CccccccceeEeeCCeEEEEEeEEecccceeeEEEEEEEEecC
Q 031204 102 GLPNGTIVTKIQPSR-ENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIP 159 (164)
Q Consensus 102 ~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~~ 159 (164)
.+|+|..+-.|...- .+.......+..-.+.-.-..-+.....+.+.+.+++.|..--
T Consensus 33 lMpsG~~I~~W~S~~nyq~~r~~P~LPlLk~g~~Y~i~~n~~~~P~~s~~~ki~F~dr~ 91 (135)
T TIGR03711 33 LMPSGETIHTWSSLTNYQAARTVPSLPLLKRGQTYKLSLNADASPEGSVYLKITFFDRQ 91 (135)
T ss_pred CCCCCCEEEEEEeeecccccCCCCCCcEEcCCCEEEEEEeeeeCCCceEEEEEEEeccC
Confidence 567787777777542 1212222333333333223444455567888888888887643
No 172
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.01 E-value=2.5e+02 Score=19.80 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCCCCCceeEEEEEech
Q 031204 65 PIKLTVYDKDTFSLDDKMGDAEFYIT 90 (164)
Q Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~v~l~ 90 (164)
.|.+.||..+.+++|.+.|-..+.+-
T Consensus 84 qivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 84 QIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred eEEEEEecCCcCCcceeeeeeeEecC
Confidence 48999999999999999988777764
No 173
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=21.02 E-value=1.5e+02 Score=18.53 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=19.8
Q ss_pred cEEEEEEEEEeEcCCCCCCCCCCcEEEEEEC
Q 031204 5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG 35 (164)
Q Consensus 5 ~g~L~v~v~~a~~L~~~~~~~~dpyv~v~~~ 35 (164)
.|.|.|++..|..-++......++|+.+.+.
T Consensus 26 ~g~L~i~~~~C~~r~p~~~p~~~Af~~v~~~ 56 (90)
T PF09923_consen 26 FGNLTITLRACVSRPPTENPDTDAFVQVTIR 56 (90)
T ss_pred EccEEEEhhheecCCCCCCcCccceEEEEEc
Confidence 4667777777754444445566778877654
Done!