Query 031205
Match_columns 164
No_of_seqs 159 out of 450
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_Z 60S ribosomal protein L 100.0 1.4E-65 4.8E-70 410.4 -3.2 161 1-164 1-162 (162)
2 4a17_T RPL24, 60S ribosomal pr 100.0 2.1E-61 7E-66 385.2 4.8 148 1-149 1-153 (158)
3 2zkr_u 60S ribosomal protein L 100.0 2.1E-60 7.1E-65 379.2 2.8 156 3-160 1-156 (157)
4 3izc_Z 60S ribosomal protein R 100.0 2.2E-58 7.5E-63 366.9 -4.3 149 3-152 1-153 (155)
5 1vq8_U 50S ribosomal protein L 100.0 3.3E-39 1.1E-43 225.4 2.8 65 3-67 1-65 (66)
6 3j21_V 50S ribosomal protein L 100.0 1.3E-35 4.4E-40 207.3 5.5 60 3-62 2-61 (66)
7 3jyw_S 60S ribosomal protein L 100.0 4E-30 1.4E-34 167.7 2.6 45 10-54 1-45 (45)
8 2hpu_A NOSL protein; alpha bet 94.7 0.018 6.2E-07 45.7 3.1 42 4-45 17-61 (175)
9 1mty_D Methane monooxygenase h 92.6 0.088 3E-06 48.2 4.0 56 6-67 402-466 (512)
10 3u52_A Phenol hydroxylase comp 88.7 0.2 7E-06 45.7 2.6 55 6-62 397-460 (511)
11 2l8e_A Polyhomeotic-like prote 85.5 0.18 6.2E-06 32.7 0.3 30 6-42 19-48 (49)
12 3ge3_A Toluene-4-monooxygenase 82.5 0.88 3E-05 41.6 3.5 43 7-51 396-444 (500)
13 1zfo_A LAsp-1; LIM domain, zin 80.3 0.46 1.6E-05 27.3 0.6 25 5-32 3-27 (31)
14 1ovx_A ATP-dependent CLP prote 75.4 0.94 3.2E-05 31.2 1.1 23 4-28 17-39 (67)
15 2inc_A Toluene, O-xylene monoo 73.1 1.6 5.5E-05 39.6 2.3 54 7-62 395-456 (491)
16 1a7i_A QCRP2 (LIM1); LIM domai 64.2 4.9 0.00017 26.4 2.7 35 4-41 6-43 (81)
17 2iyb_E Testin, TESS, TES; LIM 59.4 2.6 8.8E-05 26.8 0.6 34 6-41 3-41 (65)
18 1x68_A FHL5 protein; four-and- 59.2 6.6 0.00023 25.5 2.6 35 5-40 5-43 (76)
19 2cu8_A Cysteine-rich protein 2 58.7 8.1 0.00028 25.0 3.0 34 4-40 8-44 (76)
20 2ww6_A Fibritin, T4 fibritin; 57.0 5.1 0.00017 23.1 1.5 15 16-30 6-20 (27)
21 2egq_A FHL1 protein; LIM domai 56.7 8.5 0.00029 24.8 2.9 28 5-32 15-43 (77)
22 1wyh_A SLIM 2, skeletal muscle 55.6 8.1 0.00028 24.5 2.6 35 5-41 5-42 (72)
23 3f6q_B LIM and senescent cell 53.5 10 0.00035 23.7 2.8 26 5-32 11-36 (72)
24 2ds5_A CLPX, ATP-dependent CLP 53.5 4.2 0.00014 26.3 0.9 22 5-28 11-32 (51)
25 1x63_A Skeletal muscle LIM-pro 53.0 9.7 0.00033 24.8 2.7 26 5-32 15-40 (82)
26 2d8y_A Eplin protein; LIM doma 49.8 12 0.00041 25.1 2.8 34 5-41 15-51 (91)
27 2dj7_A Actin-binding LIM prote 49.8 9.1 0.00031 25.4 2.2 25 4-31 14-38 (80)
28 2das_A Zinc finger MYM-type pr 48.9 15 0.00051 24.9 3.0 38 7-46 22-59 (62)
29 1x4k_A Skeletal muscle LIM-pro 47.5 13 0.00045 23.4 2.6 26 5-32 5-30 (72)
30 1x64_A Alpha-actinin-2 associa 45.8 9.9 0.00034 25.4 1.9 25 4-32 24-48 (89)
31 2ntk_A IMP cyclohydrolase; alp 44.2 6.9 0.00023 32.5 1.0 29 12-40 18-48 (222)
32 1iml_A CRIP, cysteine rich int 43.8 11 0.00039 24.2 1.8 23 7-32 2-24 (76)
33 1x4l_A Skeletal muscle LIM-pro 43.8 12 0.0004 23.8 1.9 28 5-32 5-32 (72)
34 1x61_A Thyroid receptor intera 43.3 13 0.00044 23.6 2.0 25 5-31 5-29 (72)
35 1x62_A C-terminal LIM domain p 42.2 13 0.00043 24.3 1.9 25 4-32 14-38 (79)
36 2cuq_A Four and A half LIM dom 39.1 16 0.00054 23.6 2.0 24 5-32 15-38 (80)
37 1nyp_A Pinch protein; LIM doma 38.9 14 0.00047 23.1 1.6 24 5-32 5-28 (66)
38 2cup_A Skeletal muscle LIM-pro 38.7 23 0.00077 23.8 2.8 25 6-32 67-91 (101)
39 2co8_A NEDD9 interacting prote 37.9 16 0.00054 24.2 1.9 25 5-32 15-39 (82)
40 1wig_A KIAA1808 protein; LIM d 36.8 13 0.00045 24.1 1.3 12 6-17 6-17 (73)
41 2d8x_A Protein pinch; LIM doma 36.7 17 0.00057 22.9 1.8 24 5-32 5-28 (70)
42 3pn9_A Proline dipeptidase; st 36.7 19 0.00065 25.1 2.2 33 6-38 29-63 (138)
43 3o5v_A X-Pro dipeptidase; crea 36.4 19 0.00066 25.3 2.2 34 6-39 27-62 (132)
44 3tgv_A Heme-binding protein HU 34.5 14 0.00049 27.1 1.3 30 20-49 32-61 (148)
45 1avy_A Fibritin, gpwac M; bact 34.5 18 0.0006 25.3 1.7 17 14-30 48-64 (74)
46 1l8d_A DNA double-strand break 34.1 7.9 0.00027 27.2 -0.2 13 5-17 47-59 (112)
47 2l3k_A Rhombotin-2, linker, LI 34.0 8.9 0.00031 27.3 0.1 33 6-40 9-44 (123)
48 2d8z_A Four and A half LIM dom 33.6 31 0.0011 21.5 2.7 24 5-32 5-28 (70)
49 3ooo_A Proline dipeptidase; st 33.1 27 0.00093 24.4 2.6 34 6-39 27-62 (132)
50 2dlo_A Thyroid receptor-intera 33.0 21 0.0007 23.2 1.8 32 5-40 15-49 (81)
51 1g47_A Pinch protein; LIM doma 32.1 20 0.00068 22.9 1.6 27 4-32 10-36 (77)
52 1vq8_Z 50S ribosomal protein L 31.6 16 0.00054 25.6 1.1 25 5-29 27-53 (83)
53 2ehe_A Four and A half LIM dom 31.6 19 0.00064 23.4 1.4 25 6-32 16-40 (82)
54 1v6g_A Actin binding LIM prote 31.0 22 0.00076 23.1 1.7 31 6-40 16-49 (81)
55 2l4z_A DNA endonuclease RBBP8, 30.6 30 0.001 24.9 2.5 36 4-42 60-98 (123)
56 2xqn_T Testin, TESS; metal-bin 29.2 31 0.0011 24.1 2.3 24 5-31 3-26 (126)
57 4f6r_C Stathmin-like domain R1 28.9 81 0.0028 22.5 4.4 30 88-117 42-71 (87)
58 2cur_A Skeletal muscle LIM-pro 28.7 33 0.0011 21.4 2.2 11 6-16 6-16 (69)
59 1j2o_A FLIN2, fusion of rhombo 27.8 36 0.0012 23.7 2.5 33 5-40 3-38 (114)
60 1m3v_A FLIN4, fusion of the LI 27.2 20 0.0007 25.4 1.0 25 6-30 70-104 (122)
61 1gh9_A 8.3 kDa protein (gene M 27.1 13 0.00044 25.5 -0.1 23 4-27 20-42 (71)
62 3mcb_B Transcription factor BT 26.9 24 0.00082 23.3 1.2 17 22-38 11-27 (58)
63 4ayb_P DNA-directed RNA polyme 25.9 24 0.0008 22.8 1.0 12 5-16 23-34 (48)
64 1x3h_A Leupaxin; paxillin fami 25.6 33 0.0011 22.0 1.8 24 5-32 15-38 (80)
65 3ga8_A HTH-type transcriptiona 25.4 30 0.001 23.0 1.6 28 6-33 3-31 (78)
66 3lkx_A Transcription factor BT 24.5 28 0.00095 23.6 1.2 17 22-38 11-27 (66)
67 2xjy_A Rhombotin-2; oncoprotei 23.8 43 0.0015 23.5 2.3 24 7-32 68-91 (131)
68 1d0q_A DNA primase; zinc-bindi 23.6 51 0.0017 23.0 2.6 28 6-39 38-65 (103)
69 1nui_A DNA primase/helicase; z 23.2 40 0.0014 26.6 2.2 29 4-40 13-41 (255)
70 1lv3_A Hypothetical protein YA 23.2 28 0.00097 23.7 1.1 31 4-41 8-38 (68)
71 1pft_A TFIIB, PFTFIIBN; N-term 22.9 57 0.002 19.8 2.4 31 1-31 1-34 (50)
72 3i7m_A XAA-Pro dipeptidase; st 22.0 55 0.0019 23.0 2.5 34 6-39 28-63 (140)
73 2rgt_A Fusion of LIM/homeobox 21.2 40 0.0014 25.0 1.7 27 3-32 4-30 (169)
74 1b8t_A Protein (CRP1); LIM dom 21.0 38 0.0013 25.7 1.5 26 4-32 6-31 (192)
75 2q9k_A Uncharacterized protein 21.0 39 0.0013 25.0 1.6 25 25-49 47-71 (151)
76 3db0_A LIN2891 protein; putati 20.7 32 0.0011 23.7 1.0 29 22-50 36-64 (128)
No 1
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=100.00 E-value=1.4e-65 Score=410.37 Aligned_cols=161 Identities=88% Similarity=1.300 Sum_probs=74.5
Q ss_pred CccccccccccCCCccCCCceeEEecCCceeEeechHHHHhhhcccCCccchhhHHHHHhhhhhhhHHHHHHHhhccCCc
Q 031205 1 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKP 80 (164)
Q Consensus 1 mvmk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki~WT~~yRr~~kK~~~~e~~~kr~r~~~~k 80 (164)
|||++++|+|||++||||||+|||+|||+||+||||||++||++++|||+|.||.+||++|+||+++|++++++|+++++
T Consensus 1 Mvmk~e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k 80 (162)
T 3iz5_Z 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKP 80 (162)
T ss_dssp CCSSCEECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHHHTCCGGGTSSSCSCCCCCCCCCCSSSSSSSCC-----
T ss_pred CceEEEEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcccCcccchhHHHHHHHhccchhhHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhcccccCC-CCCCCCCCCCcCC
Q 031205 81 YSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAETMSKSQKSQVKSSV-PKGAAPKGPKLGG 159 (164)
Q Consensus 81 ~~R~ivg~sL~~I~~kR~qk~evr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~~~~~~k~~~k~~~-~k~~~~~~~~~~g 159 (164)
|||+|||+||++|+++|||+||+|+|+||+||+++||++++.++.+++++++. ++..+++.++.+ ++++ .+|.+||
T Consensus 81 ~qRaivg~sL~~I~~kRnqkpevR~A~Re~air~~Kekkka~~a~kka~~a~~-~~~~k~~~~~~~~~~~~--~~~~~~~ 157 (162)
T 3iz5_Z 81 YSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEV-AKSQKTQSKGGATQRGA--KGPKIGG 157 (162)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhccccccccccCcccC--CCCCCCC
Confidence 99999999999999999999999999999999999999999999999887666 444677777766 6666 8999999
Q ss_pred CCCCC
Q 031205 160 GGGKR 164 (164)
Q Consensus 160 ~~~~~ 164 (164)
++|.+
T Consensus 158 ~~~~~ 162 (162)
T 3iz5_Z 158 GGGKR 162 (162)
T ss_dssp -----
T ss_pred CCCCC
Confidence 99864
No 2
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=100.00 E-value=2.1e-61 Score=385.15 Aligned_cols=148 Identities=30% Similarity=0.500 Sum_probs=60.9
Q ss_pred CccccccccccCCCccCCCceeEEecCCceeEeechHHHHhhhcccCCccchhhHHHHHhhhhhhhHHHHHHHhhccCCc
Q 031205 1 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKP 80 (164)
Q Consensus 1 mvmk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki~WT~~yRr~~kK~~~~e~~~kr~r~~~~k 80 (164)
|||++++|+|||++||||||+|||+|||+||+||||||++||++++|||+|.||.+||++|+||+++|++.+ +++.+++
T Consensus 1 Mvmk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~kk-r~~r~vK 79 (158)
T 4a17_T 1 MVVRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQK-KKKRNVT 79 (158)
T ss_dssp -CCCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC------------------
T ss_pred CeeEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHHHH-HhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 4456679
Q ss_pred cchhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh-----hhhcccccCCCCC
Q 031205 81 YSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAETMSK-----SQKSQVKSSVPKG 149 (164)
Q Consensus 81 ~~R~ivg~sL~~I~~kR~qk~evr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~~~~-----~~k~~~k~~~~k~ 149 (164)
|||+|||+||++|+++|||+||+|+++||+||+++||++++.++.+++++++.++. .++++.++.++++
T Consensus 80 ~~R~ivg~sl~~I~~kR~qkpe~r~a~re~ai~~~Kekkka~~~~kka~~a~~~~~~~~~~~~k~~~kg~~~k~ 153 (158)
T 4a17_T 80 VARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGA 153 (158)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cchhhhhhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999988877655422 2455555544444
No 3
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.1e-60 Score=379.24 Aligned_cols=156 Identities=41% Similarity=0.716 Sum_probs=52.9
Q ss_pred cccccccccCCCccCCCceeEEecCCceeEeechHHHHhhhcccCCccchhhHHHHHhhhhhhhHHHHHHHhhccCCccc
Q 031205 3 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYS 82 (164)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki~WT~~yRr~~kK~~~~e~~~kr~r~~~~k~~ 82 (164)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||.+||++|+||+++|..++|+| .+++||
T Consensus 1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~KkR~r-~~vK~~ 79 (157)
T 2zkr_u 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTR-RAVKFQ 79 (157)
T ss_dssp ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHHHHHHHHhc-Ccccee
Confidence 7899999999999999999999999999999999999999999999999999999999999999987666554 556899
Q ss_pred hhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhcccccCCCCCCCCCCCCcCCC
Q 031205 83 RSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAETMSKSQKSQVKSSVPKGAAPKGPKLGGG 160 (164)
Q Consensus 83 R~ivg~sL~~I~~kR~qk~evr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~~~~~~k~~~k~~~~k~~~~~~~~~~g~ 160 (164)
|+|||+||++|+++|||+||||.++||+||+++||++++.++.++++.+... +.+++.+++.+.++++..+|+|||.
T Consensus 80 R~ivg~sl~~I~~kR~qkpevr~a~r~~ai~~~Ke~kk~~~~~kk~~~~~~~-~~~~~~~~~k~~k~~~k~a~~v~g~ 156 (157)
T 2zkr_u 80 RAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAK-APTKAAPKQKIVKPVKVSAPRVGGK 156 (157)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccccchhhhccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999998888887654322 1234556667777777888999974
No 4
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=100.00 E-value=2.2e-58 Score=366.87 Aligned_cols=149 Identities=45% Similarity=0.715 Sum_probs=70.2
Q ss_pred cccccccccCCCccCCCceeEEecCCceeEeechHHHHhhhcccCCccchhhHHHHHhhhhhhhHHHHHHHhhccCCccc
Q 031205 3 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYS 82 (164)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki~WT~~yRr~~kK~~~~e~~~kr~r~~~~k~~ 82 (164)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||.+||++|+||+++|++ +++++.+++||
T Consensus 1 Mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~-kkR~~~~vK~~ 79 (155)
T 3izc_Z 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVA-KKRSRKTVKAQ 79 (155)
T ss_dssp CCCEECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHHHTCCHHHHSSSCSCCCCCCCCCCCSCC-CCCCC------
T ss_pred CceeEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHHhccCcccchhHHHHHHHhCCchhhHHH-HHHhcCCccch
Confidence 78999999999999999999999999999999999999999999999999999999999999999988 55667778999
Q ss_pred hhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh----hhhcccccCCCCCCCC
Q 031205 83 RSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAETMSK----SQKSQVKSSVPKGAAP 152 (164)
Q Consensus 83 R~ivg~sL~~I~~kR~qk~evr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~~~~----~~k~~~k~~~~k~~~~ 152 (164)
|+|||+||++|+++|||+||+|.++|+++|+++||++++.++.+++++++.++. .++|+.++.++++.++
T Consensus 80 R~ivg~sl~~Ik~~r~~k~e~r~a~r~~aik~~Kekkka~~~~kk~~~a~~~~~~~~~~~~~~~kg~~~k~~~~ 153 (155)
T 3izc_Z 80 RPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAAT 153 (155)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhhhhhhccccccccccc
Confidence 999999999999999999999999999999999999999999988877655432 2466666665555443
No 5
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=100.00 E-value=3.3e-39 Score=225.41 Aligned_cols=65 Identities=26% Similarity=0.489 Sum_probs=52.9
Q ss_pred cccccccccCCCccCCCceeEEecCCceeEeechHHHHhhhcccCCccchhhHHHHHhhhhhhhH
Q 031205 3 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAA 67 (164)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki~WT~~yRr~~kK~~~~ 67 (164)
|++++|+|||++||||||+|||++||+||+||||||+++|++++|||+|+||++||++|+||+++
T Consensus 1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~ 65 (66)
T 1vq8_U 1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE 65 (66)
T ss_dssp ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence 78999999999999999999999999999999999999999999999999999999999998875
No 6
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-35 Score=207.25 Aligned_cols=60 Identities=32% Similarity=0.791 Sum_probs=57.8
Q ss_pred cccccccccCCCccCCCceeEEecCCceeEeechHHHHhhhcccCCccchhhHHHHHhhh
Q 031205 3 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62 (164)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki~WT~~yRr~~k 62 (164)
|++++|+|||++||||||+|||++||+||+|||+||++||++++|||+|+||++||+..-
T Consensus 2 ~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~~ 61 (66)
T 3j21_V 2 ARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEARL 61 (66)
T ss_dssp CCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHHH
T ss_pred CceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999999999999999998753
No 7
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.96 E-value=4e-30 Score=167.68 Aligned_cols=45 Identities=53% Similarity=1.057 Sum_probs=44.7
Q ss_pred ccCCCccCCCceeEEecCCceeEeechHHHHhhhcccCCccchhh
Q 031205 10 FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWT 54 (164)
Q Consensus 10 Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki~WT 54 (164)
|||++||||||+|||++||+||+|||+||+++|++++|||+|+||
T Consensus 1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT 45 (45)
T 3jyw_S 1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45 (45)
T ss_dssp CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence 899999999999999999999999999999999999999999998
No 8
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=94.72 E-value=0.018 Score=45.75 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=20.2
Q ss_pred ccccccccCCCc--cCCC-ceeEEecCCceeEeechHHHHhhhcc
Q 031205 4 KTELCKFSGAKI--YPGK-GIRFIRSDSQVFLFANSKCKRYFHNR 45 (164)
Q Consensus 4 k~~~C~Fsg~~I--yPG~-G~~~Vr~Dgkvf~F~ssKc~~~~~~k 45 (164)
....|.|||-.| |||. +.++..+.|++++||+-.|--.|.+.
T Consensus 17 ~~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~ 61 (175)
T 2hpu_A 17 PETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG 61 (175)
T ss_dssp ------------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred CCceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence 457899999998 4676 56666655999999999998776643
No 9
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=92.57 E-value=0.088 Score=48.20 Aligned_cols=56 Identities=9% Similarity=0.237 Sum_probs=43.5
Q ss_pred ccccccCCCc----cCCCceeEE-ecCCceeEeechHHHHhhhcccCCccc----hhhHHHHHhhhhhhhH
Q 031205 6 ELCKFSGAKI----YPGKGIRFI-RSDSQVFLFANSKCKRYFHNRLKPSKL----TWTAMYRKQHKKDIAA 67 (164)
Q Consensus 6 ~~C~Fsg~~I----yPG~G~~~V-r~Dgkvf~F~ssKc~~~~~~krnPrki----~WT~~yRr~~kK~~~~ 67 (164)
.+|..|+-++ .||....++ --+|+.|+|||.-|+..|. .||-+. .|+ | .++-++.+
T Consensus 402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l~~ 466 (512)
T 1mty_D 402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGRELSE 466 (512)
T ss_dssp EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBHHH
T ss_pred eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCHHH
Confidence 3699999984 457666665 6799999999999999998 688876 566 4 77755443
No 10
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=88.66 E-value=0.2 Score=45.71 Aligned_cols=55 Identities=18% Similarity=0.406 Sum_probs=39.3
Q ss_pred ccccccCCCc---cCCCce----eEEecCCceeEeechHHHHhhhcccCCccc--hhhHHHHHhhh
Q 031205 6 ELCKFSGAKI---YPGKGI----RFIRSDSQVFLFANSKCKRYFHNRLKPSKL--TWTAMYRKQHK 62 (164)
Q Consensus 6 ~~C~Fsg~~I---yPG~G~----~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki--~WT~~yRr~~k 62 (164)
-+|.-|..+| .||... ..+--+|+.|+|||.-|+..|. .||-+. .|+..-|-+.+
T Consensus 397 ~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g 460 (511)
T 3u52_A 397 QLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK--HEPEKYIQAWLPVHQIYQG 460 (511)
T ss_dssp CBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTT
T ss_pred CccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH--HCHHHHhcccChHHHHHcc
Confidence 3799999999 456543 3344599999999999999998 577654 45554444333
No 11
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=85.51 E-value=0.18 Score=32.66 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=23.8
Q ss_pred ccccccCCCccCCCceeEEecCCceeEeechHHHHhh
Q 031205 6 ELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYF 42 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~ 42 (164)
..|.+||..|.|..+ ++-=.|||..|...|
T Consensus 19 ~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 19 LKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY 48 (49)
T ss_dssp EECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred CcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence 469999999998663 334469999999876
No 12
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=82.50 E-value=0.88 Score=41.57 Aligned_cols=43 Identities=16% Similarity=0.467 Sum_probs=32.8
Q ss_pred cccccCCCcc--CCCc----eeEEecCCceeEeechHHHHhhhcccCCccc
Q 031205 7 LCKFSGAKIY--PGKG----IRFIRSDSQVFLFANSKCKRYFHNRLKPSKL 51 (164)
Q Consensus 7 ~C~Fsg~~Iy--PG~G----~~~Vr~Dgkvf~F~ssKc~~~~~~krnPrki 51 (164)
+|.-|..+|- ||+. ...+--+|+.|+|||.-|+..|. .||-+.
T Consensus 396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~--~~Pe~y 444 (500)
T 3ge3_A 396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQ--QDPVQY 444 (500)
T ss_dssp BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHH--HCHHHH
T ss_pred cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHH--hChHHH
Confidence 7999988885 4431 33344589999999999999998 577665
No 13
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=80.33 E-value=0.46 Score=27.34 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=18.4
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
.+.|..||..|||.--.+ -+|++|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~---~~g~~~H 27 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN---CLDKFWH 27 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC---SSSSCCC
T ss_pred CCcCCccCCEEecceeEE---ECCeEec
Confidence 468999999999984433 3666553
No 14
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=75.36 E-value=0.94 Score=31.18 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=13.1
Q ss_pred ccccccccCCCccCCCceeEEecCC
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDS 28 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dg 28 (164)
....|||||..= .--..+|..+|
T Consensus 17 ~~~~CSFCGK~e--~eV~~LIaGpg 39 (67)
T 1ovx_A 17 KLLYCSFCGKSQ--HEVRKLIAGPS 39 (67)
T ss_dssp -CCCCTTTCCCT--TTSSSEEECSS
T ss_pred CCcEecCCCCCH--HHHcccCCCCC
Confidence 446799999842 23334454444
No 15
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=73.07 E-value=1.6 Score=39.58 Aligned_cols=54 Identities=15% Similarity=0.381 Sum_probs=39.1
Q ss_pred cccccCCCcc--CCCce---eEE-ecCCceeEeechHHHHhhhcccCCccc--hhhHHHHHhhh
Q 031205 7 LCKFSGAKIY--PGKGI---RFI-RSDSQVFLFANSKCKRYFHNRLKPSKL--TWTAMYRKQHK 62 (164)
Q Consensus 7 ~C~Fsg~~Iy--PG~G~---~~V-r~Dgkvf~F~ssKc~~~~~~krnPrki--~WT~~yRr~~k 62 (164)
+|..|.-+|- ||.+. .++ --+|+.|+|||.-|+..|. .||-+. .|+..-|-.++
T Consensus 395 ~c~~cq~P~~~~~~~~~~~~~~~~~~~G~~y~fcs~~c~~~F~--~~Pery~~~~~~~~~~~~g 456 (491)
T 2inc_A 395 ICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQ--IDPERYKNHTNLVDRFLKG 456 (491)
T ss_dssp BCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHH--HSGGGTTTCCCHHHHHHTT
T ss_pred ccCCCCCccCcCCCCccccceeEEEECCEEEeecCHHHHHHHH--HCHHHHhcccchhhHHhcC
Confidence 6888877543 55554 443 6799999999999999998 577663 56665555565
No 16
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=64.19 E-value=4.9 Score=26.37 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=24.0
Q ss_pred ccccccccCCCccCCCceeEEecCCceeE---eechHHHHh
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKRY 41 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~~ 41 (164)
....|.-|+..|+++. +|.-+|++|+ |.=+.|...
T Consensus 6 ~~~~C~~C~~~I~~~~---~~~a~~~~~H~~CF~C~~C~~~ 43 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE---EVQCDGRSFHRCCFLCMVCRKN 43 (81)
T ss_dssp --CBCSSSCCBCSSTT---EEEETTEEEESSSEECSSSCCE
T ss_pred CCCcCcCcCccccCce---eEEeCCcccccccCccCCCCCC
Confidence 3568999999999987 4566778776 444455543
No 17
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=59.37 E-value=2.6 Score=26.85 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=23.4
Q ss_pred ccccccCCCccCCCceeEEecCCceeE-----eechHHHHh
Q 031205 6 ELCKFSGAKIYPGKGIRFIRSDSQVFL-----FANSKCKRY 41 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~-----F~ssKc~~~ 41 (164)
..|.-|+.+|+|+- .+|.-.|+.|+ |.=+.|...
T Consensus 3 ~~C~~C~~~I~~~~--~~v~a~~~~wH~~~~CF~C~~C~~~ 41 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV--QRVTYNNFSWHASTECFLCSCCSKC 41 (65)
T ss_dssp EECTTTSSEECTTS--CEEEETTEEEETTTTTSBCTTTCCB
T ss_pred CCCcCCCCeeccCc--eEEEECCCccCCCCCCEECCCCCCc
Confidence 46888999998852 24566678887 666666544
No 18
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.18 E-value=6.6 Score=25.48 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=23.3
Q ss_pred cccccccCCCccC-CCceeEEecCCceeE---eechHHHH
Q 031205 5 TELCKFSGAKIYP-GKGIRFIRSDSQVFL---FANSKCKR 40 (164)
Q Consensus 5 ~~~C~Fsg~~IyP-G~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (164)
...|.-|+.+|++ | ...+|.-.|+.|+ |.=+.|..
T Consensus 5 ~~~C~~C~~~I~~~g-~~~~~~a~~~~wH~~CF~C~~C~~ 43 (76)
T 1x68_A 5 SSGCVACSKPISGLT-GAKFICFQDSQWHSECFNCGKCSV 43 (76)
T ss_dssp CCCCTTTCCCCCTTT-TCCEEEETTEEEEGGGCBCTTTCC
T ss_pred CCCCccCCCcccCCC-CceeEEECCcccCcccCChhhCCC
Confidence 4679999999997 4 3345677777776 44444443
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.71 E-value=8.1 Score=24.96 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=23.3
Q ss_pred ccccccccCCCccCCCceeEEecCCceeE---eechHHHH
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (164)
-...|.-|+..|+|+. +|.-+|++|+ |.=+.|..
T Consensus 8 ~~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~ 44 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE---KVSSLGKDWHKFCLKCERCSK 44 (76)
T ss_dssp CCCBCTTTCCBCCTTT---EEEETTEEEETTTCBCSSSCC
T ss_pred CCCCCcCCCCEeECCe---EEEECCeEeeCCCCCCCCCCC
Confidence 3568999999999986 3556777776 44344543
No 20
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=56.99 E-value=5.1 Score=23.09 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.7
Q ss_pred cCCCceeEEecCCce
Q 031205 16 YPGKGIRFIRSDSQV 30 (164)
Q Consensus 16 yPG~G~~~Vr~Dgkv 30 (164)
-|--|..|||.||.-
T Consensus 6 AP~Dg~~Yvr~dg~W 20 (27)
T 2ww6_A 6 APRDAQAYVRKFGEW 20 (27)
T ss_dssp CCSSSCEEEEETTEE
T ss_pred CCcCcceeEEEcCeE
Confidence 477899999999963
No 21
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=56.74 E-value=8.5 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=21.6
Q ss_pred cccccccCCCccCC-CceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPG-KGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG-~G~~~Vr~Dgkvf~ 32 (164)
...|.-|+.+|+|+ .+..+|...|++|+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H 43 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWH 43 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEE
T ss_pred CccCcccCCcccCCCCCceeEEECcceeC
Confidence 46799999999973 25677777888775
No 22
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.55 E-value=8.1 Score=24.48 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=23.1
Q ss_pred cccccccCCCccCCCceeEEecCCceeE---eechHHHHh
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKRY 41 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~~ 41 (164)
...|..|+..|+|+. .+|.-+|++|+ |.=+.|...
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF~C~~C~~~ 42 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHCFLCSGCEQP 42 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTTCBCTTTCCB
T ss_pred CCCCccCCCccccCc--cEEEECccccCcccCeECCCCCc
Confidence 467999999999852 45666677766 444455443
No 23
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=53.51 E-value=10 Score=23.69 Aligned_cols=26 Identities=12% Similarity=0.399 Sum_probs=19.6
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|..|+..|+|+.. +|..+|++|+
T Consensus 11 ~~~C~~C~~~i~~~e~--~~~~~~~~~H 36 (72)
T 3f6q_B 11 SATCERCKGGFAPAEK--IVNSNGELYH 36 (72)
T ss_dssp TCBCTTTCCBCCTTCE--EEEETTEEEE
T ss_pred CccchhcCccccCCce--EEEeCcCeeC
Confidence 4689999999998753 4456777775
No 24
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=53.47 E-value=4.2 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=12.8
Q ss_pred cccccccCCCccCCCceeEEecCC
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDS 28 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dg 28 (164)
...|||||.. ...-..+|..+|
T Consensus 11 ~~~CSFCGk~--~~ev~~LIaGpg 32 (51)
T 2ds5_A 11 LLYCSFCGKS--QHEVRKLIAGPS 32 (51)
T ss_dssp CCBCTTTCCB--TTTSSCEEECSS
T ss_pred CcEecCCCCC--HHHhcccCCCCC
Confidence 3579999984 223344454444
No 25
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.95 E-value=9.7 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=19.3
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|..|+..|+|+. ++|..+|++|+
T Consensus 15 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 40 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD--QNVEYKGTVWH 40 (82)
T ss_dssp SCBCSSSCCBCCSSS--CEEECSSCEEE
T ss_pred CCcCccCCcccccCc--eEEEECccccc
Confidence 468999999999863 45666777765
No 26
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.79 E-value=12 Score=25.09 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=25.2
Q ss_pred cccccccCCCccCCCceeEEecCCceeE---eechHHHHh
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKRY 41 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~~ 41 (164)
...|..|+..|+++. +|..+|++|+ |.=+.|...
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 15 RETCVECQKTVYPME---RLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SCBCTTTCCBCCTTS---EEECSSSEEETTTCBCTTTCCB
T ss_pred CCcCccCCCccCCce---eEEECCCEECCCCCeeCCCCCC
Confidence 568999999999875 4677888886 555566543
No 27
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.77 E-value=9.1 Score=25.42 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=17.7
Q ss_pred ccccccccCCCccCCCceeEEecCCcee
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVF 31 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf 31 (164)
....|.-|+..|++|. +|...|+.|
T Consensus 14 ~~~~C~~C~~~I~~~~---~v~a~~~~w 38 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ---SLLALDKQW 38 (80)
T ss_dssp SCSCCTTTCCCCSSSC---CEEETTEEE
T ss_pred CCCCCcCcCCeeCCCe---EEEECCccc
Confidence 3567999999999875 344556655
No 28
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=48.91 E-value=15 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=33.2
Q ss_pred cccccCCCccCCCceeEEecCCceeEeechHHHHhhhccc
Q 031205 7 LCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRL 46 (164)
Q Consensus 7 ~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~~~~kr 46 (164)
.|+-|-..++- |..-+++.|.+-.|||.-|-..|..+.
T Consensus 22 ~C~~CKk~lqK--GQtAyqrkGs~~LFCS~~CL~~fs~~~ 59 (62)
T 2das_A 22 TCANCKKPLQK--GQTAYQRKGSAHLFCSTTCLSSFSSGP 59 (62)
T ss_dssp BCTTTCCBCCT--TSCCEECTTCCCEESSHHHHHHHCCCS
T ss_pred Chhhccchhhc--CceeeeecCchhheechHHHcccCCCC
Confidence 58888888886 888999999999999999999887654
No 29
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.54 E-value=13 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=17.2
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|..|+..|+|+. .+|.-+|++|+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 30 (72)
T 1x4k_A 5 SSGCQECKKTIMPGT--RKMEYKGSSWH 30 (72)
T ss_dssp CCCBSSSCCCCCSSS--CEEEETTEEEE
T ss_pred CCCCccCCCcccCCc--eEEEECcCeec
Confidence 457999999999863 23444556554
No 30
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.83 E-value=9.9 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.5
Q ss_pred ccccccccCCCccCCCceeEEecCCceeE
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
....|.-|+..|++ .+|..+|++|+
T Consensus 24 ~~~~C~~C~~~I~~----~~~~a~~~~~H 48 (89)
T 1x64_A 24 RMPLCDKCGSGIVG----AVVKARDKYRH 48 (89)
T ss_dssp SCCBCTTTCCBCCS----CCEESSSCEEC
T ss_pred cCCCcccCCCEecc----cEEEECCceEC
Confidence 34679999999984 56777777765
No 31
>2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} SCOP: d.153.2.1 PDB: 2ntl_A* 2ntm_A 1kuu_A
Probab=44.25 E-value=6.9 Score=32.46 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCCccCCCceeEEec-CCc-eeEeechHHHH
Q 031205 12 GAKIYPGKGIRFIRS-DSQ-VFLFANSKCKR 40 (164)
Q Consensus 12 g~~IyPG~G~~~Vr~-Dgk-vf~F~ssKc~~ 40 (164)
+...|||+|++.=+. ||+ +.||+++..+.
T Consensus 18 ~~n~YpGRgIvvG~t~~G~~vaY~I~sRSfp 48 (222)
T 2ntk_A 18 GSHMYLGRILAVGRNSNGSFVAYRVSSRSFP 48 (222)
T ss_dssp TTCCCCCSEEEEEEETTEEEEEEEEECSSCC
T ss_pred hcCCCCCCeEEEeeCCCCCEEEEEEecCCCC
Confidence 457899999999999 998 66888887654
No 32
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.82 E-value=11 Score=24.23 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=15.0
Q ss_pred cccccCCCccCCCceeEEecCCceeE
Q 031205 7 LCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 7 ~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
.|.-|+..|++|. +|...|++|+
T Consensus 2 ~C~~C~~~I~~~~---~v~a~~~~~H 24 (76)
T 1iml_A 2 KCPKCDKEVYFAE---RVTSLGKDWH 24 (76)
T ss_dssp BCTTTSSBCCGGG---EEEETTEEEE
T ss_pred cCCCCCCEEECce---EEEECCcccc
Confidence 5778888888764 3445566655
No 33
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.79 E-value=12 Score=23.84 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=17.1
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|.-|+.+|++.-...+|.-.|+.|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH 32 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWH 32 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEEC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccC
Confidence 4568888888886223344555556554
No 34
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.29 E-value=13 Score=23.59 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=14.9
Q ss_pred cccccccCCCccCCCceeEEecCCcee
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVF 31 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf 31 (164)
...|..|+.+|+|. ..+|.-+|+.|
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~ 29 (72)
T 1x61_A 5 SSGCGGCGEDVVGD--GAGVVALDRVF 29 (72)
T ss_dssp CCCCSSSCSCCCSS--SCCEECSSSEE
T ss_pred CCCCccCCCccCCC--ceEEEECCCeE
Confidence 45788888888873 12344444544
No 35
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.22 E-value=13 Score=24.32 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.8
Q ss_pred ccccccccCCCccCCCceeEEecCCceeE
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
....|.-|+..|++ .+|.-.|++|+
T Consensus 14 ~~~~C~~C~~~I~~----~~~~a~~~~~H 38 (79)
T 1x62_A 14 KLPMCDKCGTGIVG----VFVKLRDRHRH 38 (79)
T ss_dssp CCCCCSSSCCCCCS----SCEECSSCEEC
T ss_pred CCCccccCCCCccC----cEEEECcceeC
Confidence 46789999999994 26777788776
No 36
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.10 E-value=16 Score=23.61 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=17.4
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|..|+..|++. +|.-.|+.|+
T Consensus 15 ~~~C~~C~~~I~~~----~v~a~~~~~H 38 (80)
T 2cuq_A 15 APRCARCSKTLTQG----GVTYRDQPWH 38 (80)
T ss_dssp SCCCTTTCCCCCSC----CEESSSSEEC
T ss_pred CCcCCCCCCEecCc----EEEECCchhh
Confidence 35788899999864 5667777665
No 37
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.93 E-value=14 Score=23.10 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=16.5
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|.-|+..|+ |. +|.-.|++|+
T Consensus 5 ~~~C~~C~~~I~-~~---~~~a~~~~~H 28 (66)
T 1nyp_A 5 VPICGACRRPIE-GR---VVNAMGKQWH 28 (66)
T ss_dssp CCEETTTTEECC-SC---EECCTTSBEE
T ss_pred CCCCcccCCEec-ce---EEEECccccc
Confidence 467888888888 32 5666677664
No 38
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=38.66 E-value=23 Score=23.83 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=18.3
Q ss_pred ccccccCCCccCCCceeEEecCCceeE
Q 031205 6 ELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
..|.-|+..|.||. .+|.-.|.+|+
T Consensus 67 ~~C~~C~~~I~~~~--~~~~a~~~~~H 91 (101)
T 2cup_A 67 PKCKGCFKAIVAGD--QNVEYKGTVWH 91 (101)
T ss_dssp CBCSSSCCBCCSSS--CEEESSSCEEE
T ss_pred CccccCCCccccCC--eEEEeCCcchH
Confidence 57999999999863 45666667664
No 39
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.88 E-value=16 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=18.8
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|.-|+..||++.-. .-+|++|+
T Consensus 15 ~~~C~~C~~~I~~~e~v---~a~~~~wH 39 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL---CVNGHFFH 39 (82)
T ss_dssp SCBCSSSCCBCCTTTBC---CBTTBCCB
T ss_pred CCCCcccCCCcccceEE---EECCCeeC
Confidence 56899999999987643 35677765
No 40
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.84 E-value=13 Score=24.06 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=6.9
Q ss_pred ccccccCCCccC
Q 031205 6 ELCKFSGAKIYP 17 (164)
Q Consensus 6 ~~C~Fsg~~IyP 17 (164)
..|.-|+.+|++
T Consensus 6 ~~C~~C~~~I~~ 17 (73)
T 1wig_A 6 SGCDSCEKYITG 17 (73)
T ss_dssp CSCSSSCCCCSS
T ss_pred CCcccCCCEecC
Confidence 356666666653
No 41
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.71 E-value=17 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=16.8
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|..|+..|+ | .+|.-.|+.|+
T Consensus 5 ~~~C~~C~~~I~-~---~~~~a~~~~~H 28 (70)
T 2d8x_A 5 SSGCHQCGEFII-G---RVIKAMNNSWH 28 (70)
T ss_dssp SSBCSSSCCBCC-S---CCEEETTEEEC
T ss_pred CCcCccCCCEec-c---eEEEECccccc
Confidence 457888888888 2 35666777665
No 42
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=36.69 E-value=19 Score=25.13 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.7
Q ss_pred ccccccCCCccCCC--ceeEEecCCceeEeechHH
Q 031205 6 ELCKFSGAKIYPGK--GIRFIRSDSQVFLFANSKC 38 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~--G~~~Vr~Dgkvf~F~ssKc 38 (164)
.+++|||+.-.+|. +.++|..||..+.|+.+.-
T Consensus 29 ni~yltGf~g~~~er~~~lli~~~g~~~l~~d~~~ 63 (138)
T 3pn9_A 29 TINYLTGFYSDPHERQMFLFVLADQEPLLFVPALE 63 (138)
T ss_dssp HHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGG
T ss_pred ceeeecCCCCCCccceEEEEEeCCCCEEEEEeccc
Confidence 45778887755543 5788999999999998744
No 43
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=36.44 E-value=19 Score=25.27 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=26.5
Q ss_pred ccccccCCCccCC--CceeEEecCCceeEeechHHH
Q 031205 6 ELCKFSGAKIYPG--KGIRFIRSDSQVFLFANSKCK 39 (164)
Q Consensus 6 ~~C~Fsg~~IyPG--~G~~~Vr~Dgkvf~F~ssKc~ 39 (164)
.+.+|||+...|| .+.++|..||..+.|+.+--.
T Consensus 27 ni~YltGf~~~~~er~~~l~v~~~g~~~l~~~~~y~ 62 (132)
T 3o5v_A 27 TINYLTGFFCDPHERQLFLFVYHDLAPVLFVPALEV 62 (132)
T ss_dssp HHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGH
T ss_pred hhhHhhCCCCCCccceEEEEEeCCCCEEEEeehhhh
Confidence 4568888887766 357899999999999987653
No 44
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=34.52 E-value=14 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=24.7
Q ss_pred ceeEEecCCceeEeechHHHHhhhcccCCc
Q 031205 20 GIRFIRSDSQVFLFANSKCKRYFHNRLKPS 49 (164)
Q Consensus 20 G~~~Vr~Dgkvf~F~ssKc~~~~~~krnPr 49 (164)
=.-||..||.++.++|....+.-.+.+|||
T Consensus 32 ~v~~~~~~~~~~~~~s~~~~~~~nl~~~pr 61 (148)
T 3tgv_A 32 YAPFVQNQEGYFVLISHIARHARNLEVNPQ 61 (148)
T ss_dssp EEEEEEETTEEEEEEETTSHHHHHHHHSCE
T ss_pred EEEEEEECCEEEEEECCccHHHHHHHhCCC
Confidence 456888899888888888888778899997
No 45
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=34.46 E-value=18 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.9
Q ss_pred CccCCCceeEEecCCce
Q 031205 14 KIYPGKGIRFIRSDSQV 30 (164)
Q Consensus 14 ~IyPG~G~~~Vr~Dgkv 30 (164)
+.-|--|..|||.||--
T Consensus 48 p~AP~DG~~YVrkDgaW 64 (74)
T 1avy_A 48 PEAPRDGQAYVRKDGEW 64 (74)
T ss_dssp CCCCCSSCCEEEETTEE
T ss_pred CCCCCCCceeEEecCee
Confidence 34588899999999963
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.11 E-value=7.9 Score=27.24 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=10.9
Q ss_pred cccccccCCCccC
Q 031205 5 TELCKFSGAKIYP 17 (164)
Q Consensus 5 ~~~C~Fsg~~IyP 17 (164)
-+.|.+||.+|.|
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3579999999986
No 47
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.05 E-value=8.9 Score=27.34 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=19.0
Q ss_pred ccccccCCCccCCCceeEEecCCceeE---eechHHHH
Q 031205 6 ELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (164)
+.|..|+..|+|+- ++|...|++|+ |.=+.|.+
T Consensus 9 ~~C~~C~~~I~~~e--~~~~a~~~~~H~~CF~C~~C~~ 44 (123)
T 2l3k_A 9 GLCASCDKRIRAYE--MTMRVKDKVYHLECFKCAACQK 44 (123)
T ss_dssp CCCSSSSCCCCTTC--CCCCCSSCCCCTTTCBCTTTCC
T ss_pred CcccCCCCeecCCc--eEEEECCcccccccCccccCCC
Confidence 46888888888742 23344455554 44444543
No 48
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.60 E-value=31 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=17.2
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|..|+..|++. +|.-.|++|+
T Consensus 5 ~~~C~~C~~~I~~~----~~~a~~~~~H 28 (70)
T 2d8z_A 5 SSGCVQCKKPITTG----GVTYREQPWH 28 (70)
T ss_dssp CCBCSSSCCBCCSS----EEESSSSEEE
T ss_pred CCCCcccCCeeccc----eEEECccccC
Confidence 45788899999842 3666777776
No 49
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=33.06 E-value=27 Score=24.39 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=26.1
Q ss_pred ccccccCCCccCC--CceeEEecCCceeEeechHHH
Q 031205 6 ELCKFSGAKIYPG--KGIRFIRSDSQVFLFANSKCK 39 (164)
Q Consensus 6 ~~C~Fsg~~IyPG--~G~~~Vr~Dgkvf~F~ssKc~ 39 (164)
.+.+|||+.-.|| .+.++|..||..+.|+.+--.
T Consensus 27 ni~YlTGf~~~~~er~~~l~v~~~g~~~l~~~~~y~ 62 (132)
T 3ooo_A 27 TVNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEV 62 (132)
T ss_dssp HHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGH
T ss_pred hHHHHhCCCCCCCcceEEEEEeCCCCEEEEEeccch
Confidence 4568899887665 347899999999999987643
No 50
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.01 E-value=21 Score=23.24 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=21.5
Q ss_pred cccccccCCCccCCCceeEEecCCceeE---eechHHHH
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (164)
...|..|+.+|+ | ++|.-.|++|+ |.=+.|..
T Consensus 15 ~~~C~~C~~~I~-~---~~~~a~~~~~H~~CF~C~~C~~ 49 (81)
T 2dlo_A 15 LEKCATCSQPIL-D---RILRAMGKAYHPGCFTCVVCHR 49 (81)
T ss_dssp CCBCTTTCCBCC-S---CCEEETTEEECTTTCBCSSSCC
T ss_pred CCccccCCCeec-c---eeEEECCccccHHhcCcccCCC
Confidence 457889999998 2 36777777776 44445544
No 51
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.09 E-value=20 Score=22.87 Aligned_cols=27 Identities=11% Similarity=0.379 Sum_probs=17.9
Q ss_pred ccccccccCCCccCCCceeEEecCCceeE
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
-...|..|+..|+|+.- +|..+|++|+
T Consensus 10 ~~~~C~~C~~~I~~~~~--~~~a~~~~~H 36 (77)
T 1g47_A 10 ASATCERCKGGFAPAEK--IVNSNGELYH 36 (77)
T ss_dssp CCCBCSSSCCBCCSTTT--CEEETTEEEC
T ss_pred CCCCchhcCCccCCCce--EEEeCccEec
Confidence 35679999999997532 3444566554
No 52
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.58 E-value=16 Score=25.60 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=15.4
Q ss_pred cccccccCCCcc--CCCceeEEecCCc
Q 031205 5 TELCKFSGAKIY--PGKGIRFIRSDSQ 29 (164)
Q Consensus 5 ~~~C~Fsg~~Iy--PG~G~~~Vr~Dgk 29 (164)
...|.|||...- |+.|++--..=|.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCC
Confidence 357999997553 6777555444333
No 53
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.57 E-value=19 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=15.1
Q ss_pred ccccccCCCccCCCceeEEecCCceeE
Q 031205 6 ELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
..|.-|+.+|+|+ ..+|.-.|+.|+
T Consensus 16 ~~C~~C~~~I~~~--~~~~~a~~~~~H 40 (82)
T 2ehe_A 16 NTCAECQQLIGHD--SRELFYEDRHFH 40 (82)
T ss_dssp CBCTTTCCBCCSS--CCBCCCSSCCCB
T ss_pred CcCccCCCccccC--cEEEEeCCcccc
Confidence 4688888888862 233444455443
No 54
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.97 E-value=22 Score=23.05 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=21.6
Q ss_pred ccccccCCCccCCCceeEEecCCceeE---eechHHHH
Q 031205 6 ELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (164)
..|..|+..|+ | .+|...|++|+ |.=..|..
T Consensus 16 ~~C~~C~~~I~-~---~~v~a~~~~wH~~CF~C~~C~~ 49 (81)
T 1v6g_A 16 TRCFSCDQFIE-G---EVVSALGKTYHPDCFVCAVCRL 49 (81)
T ss_dssp CBCTTTCCBCC-S---CCEEETTEEECTTTSSCSSSCC
T ss_pred CcCccccCEec-c---ceEEECCceeCccCCccccCCC
Confidence 57999999999 3 46777778776 44444543
No 55
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.62 E-value=30 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=25.0
Q ss_pred ccccccccCCCccCCCceeEEecCCceeE---eechHHHHhh
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKRYF 42 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~~~ 42 (164)
....|.-|+..|+.+ .+|.-.|+.|+ |.=+.|...+
T Consensus 60 ~~~~C~~C~~~I~~~---~~v~a~~~~wH~~CF~C~~C~~~L 98 (123)
T 2l4z_A 60 SWKRCAGCGGKIADR---FLLYAMDSYWHSRCLKCSSCQAQL 98 (123)
T ss_dssp SCSBBSSSSSBCCSS---SEEEETTEEEETTTSBCTTTCCBG
T ss_pred cCCcCcCCCCCcCCc---EEEEeCCcEEcccccCcCcCCCcc
Confidence 346899999999943 45777888886 4445665544
No 56
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.18 E-value=31 Score=24.14 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=14.2
Q ss_pred cccccccCCCccCCCceeEEecCCcee
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVF 31 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf 31 (164)
...|.-|+..|++|. +|.-.|+.+
T Consensus 3 ~~~C~~C~~~I~~~~---~~~a~~~~~ 26 (126)
T 2xqn_T 3 KPRCAGCDELIFSNE---YTQAENQNW 26 (126)
T ss_dssp CCBBTTTSSBCCSSC---EEEETTEEE
T ss_pred CCCCccCCCEeCCce---EEeeCCCCc
Confidence 356777888887653 344444444
No 57
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=28.88 E-value=81 Score=22.49 Aligned_cols=30 Identities=37% Similarity=0.407 Sum_probs=17.4
Q ss_pred hcHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 031205 88 ATLEVIQKRRTEKPEVRDAAREAALREIKE 117 (164)
Q Consensus 88 ~sL~~I~~kR~qk~evr~a~Re~a~~~~Ke 117 (164)
.||++|+.+-..-.|-|+++-.+-++.+.+
T Consensus 42 ~SleeIqkKLeAAeERRks~EA~~L~~Lae 71 (87)
T 4f6r_C 42 PSLEEIQKKLEAAEERRKAHFAAMLERLQE 71 (87)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999987654445555444333443333
No 58
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.71 E-value=33 Score=21.42 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=5.7
Q ss_pred ccccccCCCcc
Q 031205 6 ELCKFSGAKIY 16 (164)
Q Consensus 6 ~~C~Fsg~~Iy 16 (164)
..|..|+..|+
T Consensus 6 ~~C~~C~~~I~ 16 (69)
T 2cur_A 6 SGCVKCNKAIT 16 (69)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCcccCCEeC
Confidence 34555555554
No 59
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.85 E-value=36 Score=23.71 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=20.3
Q ss_pred cccccccCCCccCCCceeEEecCCceeE---eechHHHH
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (164)
...|.-|+.+|+.+ .+|.-.|+.|+ |.=+.|..
T Consensus 3 ~~~C~~C~~~I~~~---~~~~a~~~~wH~~CF~C~~C~~ 38 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR---YFLKAIDQYWHEDCLSCDLCGC 38 (114)
T ss_dssp CBCBSSSCSCBCSS---EEEECSSSEECTTTCCCSSSCS
T ss_pred CCCCcCCCCeeCCc---EEEEECchhHHHhcCcccccCC
Confidence 35688888888843 45666666665 33344543
No 60
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.16 E-value=20 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=18.7
Q ss_pred ccccccCCCccCC----------CceeEEecCCce
Q 031205 6 ELCKFSGAKIYPG----------KGIRFIRSDSQV 30 (164)
Q Consensus 6 ~~C~Fsg~~IyPG----------~G~~~Vr~Dgkv 30 (164)
+.|+-|+.+|.++ .|..|+-.||++
T Consensus 70 ~~C~~C~~~I~~~~~~~~g~~~l~g~~f~~~~~~~ 104 (122)
T 1m3v_A 70 GAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERL 104 (122)
T ss_dssp CSSSCSSCCSCCEESSSSSSSSCCSCTTCCTTCCC
T ss_pred CccccCCCCcCchheEEcCCcCCCCCccEecCCEe
Confidence 3799999999963 466677777764
No 61
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=27.14 E-value=13 Score=25.47 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=18.6
Q ss_pred ccccccccCCCccCCCceeEEecC
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSD 27 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~D 27 (164)
++-.|. ||..|....-+.|+..|
T Consensus 20 kT~~C~-CG~~~~~~k~rif~~~~ 42 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRIFGRAD 42 (71)
T ss_dssp SEEEET-TTEEEECCSSSCBSCCS
T ss_pred cEEECC-CCCeeeeceEEEEEecC
Confidence 567897 99999998888887654
No 62
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=26.92 E-value=24 Score=23.31 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.0
Q ss_pred eEEecCCceeEeechHH
Q 031205 22 RFIRSDSQVFLFANSKC 38 (164)
Q Consensus 22 ~~Vr~Dgkvf~F~ssKc 38 (164)
-+.+.||.|++|-+-|-
T Consensus 11 nmfk~dg~vihF~nPkV 27 (58)
T 3mcb_B 11 NMFTNQGTVIHFNNPKV 27 (58)
T ss_dssp EEEETTSEEEEEESCEE
T ss_pred EEEecCCEEEEecCcce
Confidence 37789999999988664
No 63
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.87 E-value=24 Score=22.80 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=9.2
Q ss_pred cccccccCCCcc
Q 031205 5 TELCKFSGAKIY 16 (164)
Q Consensus 5 ~~~C~Fsg~~Iy 16 (164)
.-.|.+|||+|-
T Consensus 23 ~IrCpyCGyrii 34 (48)
T 4ayb_P 23 GVRCPYCGYKII 34 (48)
T ss_dssp SSCCTTTCCSCE
T ss_pred CcccCccCcEEE
Confidence 446999999873
No 64
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.61 E-value=33 Score=22.02 Aligned_cols=24 Identities=8% Similarity=0.247 Sum_probs=17.2
Q ss_pred cccccccCCCccCCCceeEEecCCceeE
Q 031205 5 TELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
...|.-|+..|++ .+|...|++|+
T Consensus 15 ~~~C~~C~~~I~~----~~v~a~~~~~H 38 (80)
T 1x3h_A 15 SPKCGGCNRPVLE----NYLSAMDTVWH 38 (80)
T ss_dssp SCBCTTTCCBCCS----SCEEETTEEEC
T ss_pred CCccccCCCeecc----eeEEECCCeEe
Confidence 4578888888885 35666777665
No 65
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=25.37 E-value=30 Score=22.99 Aligned_cols=28 Identities=7% Similarity=-0.030 Sum_probs=21.0
Q ss_pred ccccccCCC-ccCCCceeEEecCCceeEe
Q 031205 6 ELCKFSGAK-IYPGKGIRFIRSDSQVFLF 33 (164)
Q Consensus 6 ~~C~Fsg~~-IyPG~G~~~Vr~Dgkvf~F 33 (164)
.+|.+||.. +.+|...+-+.-+|..+.+
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I 31 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVL 31 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEE
Confidence 479999864 8888887777777776544
No 66
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=24.52 E-value=28 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=13.9
Q ss_pred eEEecCCceeEeechHH
Q 031205 22 RFIRSDSQVFLFANSKC 38 (164)
Q Consensus 22 ~~Vr~Dgkvf~F~ssKc 38 (164)
-+.+.||+|++|-+-|-
T Consensus 11 nmfk~dg~vihF~nPkV 27 (66)
T 3lkx_A 11 NMFTNQGTVIHFNNPKV 27 (66)
T ss_dssp EEEETTSEEEEEESCEE
T ss_pred EEEecCCEEEEecCcce
Confidence 36789999999988664
No 67
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.83 E-value=43 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=16.9
Q ss_pred cccccCCCccCCCceeEEecCCceeE
Q 031205 7 LCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 7 ~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
.|..|+..|+|+- ++|.-.|.+|+
T Consensus 68 ~C~~C~~~I~~~e--~~~~a~~~~~H 91 (131)
T 2xjy_A 68 LCASCDKRIRAYE--MTMRVKDKVYH 91 (131)
T ss_dssp ECTTTCCEECTTS--EEEEETTEEEE
T ss_pred ChhhcCCccCccc--eeEeeCCceEC
Confidence 7899999998743 45555666665
No 68
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=23.64 E-value=51 Score=23.00 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=19.3
Q ss_pred ccccccCCCccCCCceeEEecCCceeEeechHHH
Q 031205 6 ELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCK 39 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~ 39 (164)
..|.||+.+ |..+.|. +++-+|+|.+ |.
T Consensus 38 ~~CPfh~e~----~pSf~V~-~~k~~~~Cf~-cg 65 (103)
T 1d0q_A 38 GLCPFHGEK----TPSFSVS-PEKQIFHCFG-CG 65 (103)
T ss_dssp ECCSSSCCS----SCCEEEE-TTTTEEEETT-TC
T ss_pred EECCCCCCC----CCcEEEE-cCCCEEEECC-CC
Confidence 468888744 4567774 5577889986 65
No 69
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=23.24 E-value=40 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=20.4
Q ss_pred ccccccccCCCccCCCceeEEecCCceeEeechHHHH
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKR 40 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~ 40 (164)
+-..|..||.. ..+++-.|| .+||+ .|..
T Consensus 13 ~~~~CP~Cg~~-----d~~~~~~dg--~~~C~-~Cg~ 41 (255)
T 1nui_A 13 YHIPCDNCGSS-----DGNSLFSDG--HTFCY-VCEK 41 (255)
T ss_dssp EEECCSSSCCS-----SCEEEETTS--CEEET-TTCC
T ss_pred cCCcCCCCCCC-----CCceEeCCC--Ceecc-cCCC
Confidence 45679999864 235555788 48999 6864
No 70
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=23.18 E-value=28 Score=23.74 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=22.4
Q ss_pred ccccccccCCCccCCCceeEEecCCceeEeechHHHHh
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRY 41 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~ 41 (164)
.+..|.-||.++.-..- ..-.-|||..|...
T Consensus 8 ~~~~CP~Cgkp~~W~~~-------~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGEI-------SPFRPFCSKRCQLI 38 (68)
T ss_dssp CEEECTTTCCEEECSSS-------SSCCSSSSHHHHHH
T ss_pred CcCcCCCCCCccccccc-------CCCCcccCHHHHhh
Confidence 34579999998764432 44557999999864
No 71
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.93 E-value=57 Score=19.75 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=21.7
Q ss_pred CccccccccccCC-Cc--cCCCceeEEecCCcee
Q 031205 1 MVLKTELCKFSGA-KI--YPGKGIRFIRSDSQVF 31 (164)
Q Consensus 1 mvmk~~~C~Fsg~-~I--yPG~G~~~Vr~Dgkvf 31 (164)
|.-.+-.|.-||. .| -|.+|.+.-...|-+|
T Consensus 1 m~~~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 1 MVNKQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSSCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred CCCccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 5555667999977 54 2677887777777665
No 72
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=22.05 E-value=55 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=25.8
Q ss_pred ccccccCCCccCCC--ceeEEecCCceeEeechHHH
Q 031205 6 ELCKFSGAKIYPGK--GIRFIRSDSQVFLFANSKCK 39 (164)
Q Consensus 6 ~~C~Fsg~~IyPG~--G~~~Vr~Dgkvf~F~ssKc~ 39 (164)
.+.+|||+.-.||. +.++|..||..+.|+.+--.
T Consensus 28 ni~YlTGf~~~~~er~~~llv~~~g~~~l~~~~~~~ 63 (140)
T 3i7m_A 28 TIEYLTGFGSDPIERVLALVVFPDQDPFIFAPALEV 63 (140)
T ss_dssp HHHHHHCCCCCCCSSCCEEEECSSSCCEEEEEGGGH
T ss_pred cceeecCCCCCCccceEEEEEeCCCCEEEEEecccH
Confidence 45688998866652 47888899999999987654
No 73
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.25 E-value=40 Score=25.03 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=15.0
Q ss_pred cccccccccCCCccCCCceeEEecCCceeE
Q 031205 3 LKTELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
+....|..|+..|+.+ .+|..+|+.++
T Consensus 4 ~~~~~C~~C~~~I~~~---~~~~a~~~~wH 30 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDR---FILKALDRHWH 30 (169)
T ss_dssp ---CBBSSSSSBCCSS---SCEECSSCEEC
T ss_pred CCCCccccCCCccCCc---EEEEECCcEEc
Confidence 4567788888888843 23444555554
No 74
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.01 E-value=38 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=16.4
Q ss_pred ccccccccCCCccCCCceeEEecCCceeE
Q 031205 4 KTELCKFSGAKIYPGKGIRFIRSDSQVFL 32 (164)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (164)
....|..|+..|++|.- |.-+|+.|+
T Consensus 6 ~~~~C~~C~~~I~~~~~---v~a~g~~wH 31 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEE---VQCEGSSFH 31 (192)
T ss_dssp CCEECTTTCCEECSSCC---EEETTEEEC
T ss_pred CCCcCccCCCeecceeE---EEeCCceec
Confidence 34678888888887662 334555554
No 75
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}
Probab=20.99 E-value=39 Score=25.03 Aligned_cols=25 Identities=4% Similarity=-0.006 Sum_probs=17.3
Q ss_pred ecCCceeEeechHHHHhhhcccCCc
Q 031205 25 RSDSQVFLFANSKCKRYFHNRLKPS 49 (164)
Q Consensus 25 r~Dgkvf~F~ssKc~~~~~~krnPr 49 (164)
..||.++++++.--+++-.+++||+
T Consensus 47 ~d~~~l~f~~~~~~~k~~nl~~np~ 71 (151)
T 2q9k_A 47 KDETTIRFAIEADSLLVKTLADHPV 71 (151)
T ss_dssp EETTEEEEEEETTCTHHHHHHHSCC
T ss_pred eCCCEEEEEECCCcHHHHHHHhCCc
Confidence 3567766666666566666888986
No 76
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}
Probab=20.66 E-value=32 Score=23.67 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=15.2
Q ss_pred eEEecCCceeEeechHHHHhhhcccCCcc
Q 031205 22 RFIRSDSQVFLFANSKCKRYFHNRLKPSK 50 (164)
Q Consensus 22 ~~Vr~Dgkvf~F~ssKc~~~~~~krnPrk 50 (164)
-|+..||.++++++..-.+.-.++.||+=
T Consensus 36 ~~~~~~~~l~f~t~~~s~k~~~l~~np~v 64 (128)
T 3db0_A 36 TFLHDGLTLYTPSGKELPKTEEVRRNPHV 64 (128)
T ss_dssp ECEEETTEEEEEC----CTTCCCCCCCEE
T ss_pred EEEecCCEEEEEECCCCHHHHHHHhCCce
Confidence 34554555444444444566668999974
Done!