Your job contains 1 sequence.
>031206
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQ
RILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDL
AFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031206
(164 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2164585 - symbol:AT5G56940 species:3702 "Arabi... 445 5.2e-42 1
TAIR|locus:2139624 - symbol:SSR16 "small subunit ribosoma... 289 1.8e-25 1
ASPGD|ASPL0000067200 - symbol:AN7701 species:162425 "Emer... 105 3.5e-15 2
SGD|S000005934 - symbol:MRPS16 "Mitochondrial ribosomal p... 106 1.2e-14 2
POMBASE|SPBC354.06 - symbol:mrps16 "mitochondrial ribosom... 107 1.3e-13 2
TIGR_CMR|SPO_3253 - symbol:SPO_3253 "ribosomal protein S1... 171 5.6e-13 1
UNIPROTKB|P66444 - symbol:rpsP "30S ribosomal protein S16... 165 2.4e-12 1
UNIPROTKB|F1SU70 - symbol:LOC100739849 "Uncharacterized p... 161 6.4e-12 1
UNIPROTKB|P82915 - symbol:MRPS16 "28S ribosomal protein S... 156 2.2e-11 1
RGD|1582995 - symbol:Mrps16 "mitochondrial ribosomal prot... 155 2.8e-11 1
UNIPROTKB|Q9Y3D3 - symbol:MRPS16 "28S ribosomal protein S... 153 4.5e-11 1
UNIPROTKB|J9NS54 - symbol:MRPS16 "Uncharacterized protein... 152 5.8e-11 1
UNIPROTKB|E1C907 - symbol:MRPS16 "Uncharacterized protein... 151 7.4e-11 1
MGI|MGI:1913492 - symbol:Mrps16 "mitochondrial ribosomal ... 150 9.4e-11 1
TIGR_CMR|ECH_0192 - symbol:ECH_0192 "ribosomal protein S1... 144 4.1e-10 1
TIGR_CMR|BA_3982 - symbol:BA_3982 "ribosomal protein S16"... 140 1.1e-09 1
TIGR_CMR|NSE_0123 - symbol:NSE_0123 "ribosomal protein S1... 139 1.4e-09 1
TIGR_CMR|CHY_1433 - symbol:CHY_1433 "ribosomal protein S1... 137 2.2e-09 1
TIGR_CMR|GSU_0643 - symbol:GSU_0643 "ribosomal protein S1... 136 2.9e-09 1
TIGR_CMR|APH_0054 - symbol:APH_0054 "ribosomal protein S1... 135 3.6e-09 1
UNIPROTKB|A6ND22 - symbol:MRPS16 "28S ribosomal protein S... 133 5.9e-09 1
UNIPROTKB|B4E032 - symbol:MRPS16 "cDNA FLJ58442, highly s... 133 5.9e-09 1
UNIPROTKB|P66435 - symbol:rpsP "30S ribosomal protein S16... 132 7.6e-09 1
ZFIN|ZDB-GENE-041010-123 - symbol:mrps16 "mitochondrial r... 131 9.7e-09 1
TIGR_CMR|DET_0568 - symbol:DET_0568 "ribosomal protein S1... 129 1.6e-08 1
TIGR_CMR|CPS_4069 - symbol:CPS_4069 "ribosomal protein S1... 125 4.2e-08 1
FB|FBgn0033907 - symbol:mRpS16 "mitochondrial ribosomal p... 117 2.9e-07 1
TIGR_CMR|CBU_0445 - symbol:CBU_0445 "ribosomal protein S1... 117 2.9e-07 1
UNIPROTKB|P0A7T3 - symbol:rpsP "30S ribosomal subunit pro... 115 4.8e-07 1
UNIPROTKB|Q9KUG0 - symbol:rpsP "30S ribosomal protein S16... 115 4.8e-07 1
TIGR_CMR|VC_0561 - symbol:VC_0561 "ribosomal protein S16"... 115 4.8e-07 1
CGD|CAL0001930 - symbol:orf19.7012 species:5476 "Candida ... 94 5.0e-07 2
TIGR_CMR|SO_1357 - symbol:SO_1357 "ribosomal protein S16"... 111 1.3e-06 1
UNIPROTKB|F1PT11 - symbol:F1PT11 "Uncharacterized protein... 107 3.4e-06 1
TIGR_CMR|CJE_0810 - symbol:CJE_0810 "ribosomal protein S1... 102 1.1e-05 1
UNIPROTKB|P0C473 - symbol:rps16 "30S ribosomal protein S1... 99 2.4e-05 1
UNIPROTKB|P0C474 - symbol:rps16 "30S ribosomal protein S1... 99 2.4e-05 1
UNIPROTKB|P12151 - symbol:rps16 "30S ribosomal protein S1... 99 2.4e-05 1
UNIPROTKB|Q6ENJ5 - symbol:rps16 "30S ribosomal protein S1... 99 2.4e-05 1
WB|WBGene00018961 - symbol:mrps-16 species:6239 "Caenorha... 78 7.2e-05 2
>TAIR|locus:2164585 [details] [associations]
symbol:AT5G56940 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0009536
"plastid" evidence=IDA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0005739
EMBL:CP002688 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB024035 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 OMA:YNIVVAH
HSSP:P80379 EMBL:AY034927 EMBL:AY059147 IPI:IPI00524534
RefSeq:NP_200504.1 UniGene:At.7092 ProteinModelPortal:Q9LTS6
SMR:Q9LTS6 STRING:Q9LTS6 PRIDE:Q9LTS6 EnsemblPlants:AT5G56940.1
GeneID:835796 KEGG:ath:AT5G56940 TAIR:At5g56940 InParanoid:Q9LTS6
PhylomeDB:Q9LTS6 ProtClustDB:CLSN2687373 ArrayExpress:Q9LTS6
Genevestigator:Q9LTS6 Uniprot:Q9LTS6
Length = 135
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 89/124 (71%), Positives = 99/124 (79%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDG--------------QDSGKRMGLNFDRVK 46
MVVRIRL+RFGCKN+PF+RVMAADSRSPRDG QD GKRMGL FDR+K
Sbjct: 1 MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60
Query: 47 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 106
YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++ K +
Sbjct: 61 YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAEN--KTV 118
Query: 107 KADD 110
A+D
Sbjct: 119 NAND 122
>TAIR|locus:2139624 [details] [associations]
symbol:SSR16 "small subunit ribosomal protein 16"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS;TAS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP;RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010267 "production
of ta-siRNAs involved in RNA interference" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048481 "ovule development" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006412 GO:GO:0009941 GO:GO:0009793
GO:GO:0005840 GO:GO:0003735 EMBL:AL161585 EMBL:AL023094
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:FSKAGIM EMBL:AY045607 EMBL:AY048218
EMBL:AY052220 EMBL:AF412081 EMBL:AY086956 EMBL:AY143795
IPI:IPI00529246 PIR:T05282 RefSeq:NP_195188.1 UniGene:At.22916
HSSP:P80379 ProteinModelPortal:O65686 SMR:O65686 STRING:O65686
PaxDb:O65686 PRIDE:O65686 ProMEX:O65686 EnsemblPlants:AT4G34620.1
GeneID:829614 KEGG:ath:AT4G34620 TAIR:At4g34620 InParanoid:O65686
PhylomeDB:O65686 ProtClustDB:CLSN2916103 ArrayExpress:O65686
Genevestigator:O65686 Uniprot:O65686
Length = 113
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQD----------SGK----RMGLNFDRVK 46
M V+IRLAR GCK++PFYRV+ AD +S RDG+ GK R+ L FDR+K
Sbjct: 1 MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60
Query: 47 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPMTGRVL 97
YWLSVGAQP+D V+ +LFRAGL+PP PMV +G K G + T + V P+TG +L
Sbjct: 61 YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112
>ASPGD|ASPL0000067200 [details] [associations]
symbol:AN7701 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:BN001304 EMBL:AACD01000130 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720
OrthoDB:EOG498Z9D RefSeq:XP_680970.1 ProteinModelPortal:Q5AVH9
STRING:Q5AVH9 EnsemblFungi:CADANIAT00000832 GeneID:2869400
KEGG:ani:AN7701.2 OMA:YNIVVAH Uniprot:Q5AVH9
Length = 105
Score = 105 (42.0 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 36 KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 71
K + L+ R KYWL VGAQPSD V R+L AGL+ P
Sbjct: 62 KEISLDRSRAKYWLGVGAQPSDTVWRLLSLAGLVKP 97
Score = 100 (40.3 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ 32
MVVRIRLARFG K++PFY ++ A +RS R+ +
Sbjct: 1 MVVRIRLARFGNKHQPFYNIVVAQARSARNSK 32
>SGD|S000005934 [details] [associations]
symbol:MRPS16 "Mitochondrial ribosomal protein of the small
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005840
"ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0032543 "mitochondrial translation" evidence=IC] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IPI] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IPI] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 SGD:S000005934 EMBL:BK006949
GO:GO:0003735 GO:GO:0032543 EMBL:U33335 GO:GO:0005763
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 GeneTree:ENSGT00390000014309 OrthoDB:EOG498Z9D
PIR:S59680 RefSeq:NP_015312.1 ProteinModelPortal:Q02608 SMR:Q02608
DIP:DIP-4453N IntAct:Q02608 MINT:MINT-572585 STRING:Q02608
PaxDb:Q02608 PeptideAtlas:Q02608 EnsemblFungi:YPL013C GeneID:856094
KEGG:sce:YPL013C CYGD:YPL013c OMA:PARNNPK NextBio:981128
Genevestigator:Q02608 GermOnline:YPL013C Uniprot:Q02608
Length = 121
Score = 106 (42.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 36 KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 69
K + L+FDR KYW+ VGAQPS+ V ++L +AG+L
Sbjct: 63 KDVKLDFDRTKYWIGVGAQPSETVTKLLRKAGIL 96
Score = 94 (38.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ 32
+VRIRLARFG KN P Y ++ A+SR RD +
Sbjct: 5 LVRIRLARFGRKNSPVYNIVVANSRKARDAK 35
>POMBASE|SPBC354.06 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein subunit
S16 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003735 GO:GO:0032543 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 PIR:T40286
RefSeq:NP_595230.2 STRING:O43020 EnsemblFungi:SPBC354.06.1
GeneID:2541005 OrthoDB:EOG498Z9D NextBio:20802119 Uniprot:O43020
Length = 96
Score = 107 (42.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 30 DGQDSGKRMG---LNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPM 74
D QDS R+ LN +R KYW+SVGAQPSD V+ + + LLP P+
Sbjct: 48 DSQDSIPRIKDIQLNVERFKYWISVGAQPSDTVRSLAEKFQLLPKKPV 95
Score = 83 (34.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADS-RSPR 29
MVV+IRLAR G +N+PFY ++ A++ ++P+
Sbjct: 1 MVVKIRLARHGVRNRPFYHIVVANAWKAPQ 30
>TIGR_CMR|SPO_3253 [details] [associations]
symbol:SPO_3253 "ribosomal protein S16" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_168456.1
ProteinModelPortal:Q5LNF2 SMR:Q5LNF2 GeneID:3195394
KEGG:sil:SPO3253 PATRIC:23379951 OMA:GSWNPML Uniprot:Q5LNF2
Length = 121
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 39/83 (46%), Positives = 55/83 (66%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------------DSGKRMGLNFDRVK 46
M ++IRLAR G K +PFYR++AADSR PRDG+ DS +R+ ++ +RV+
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60
Query: 47 YWLSVGAQPSDPVQRILFRAGLL 69
YWLS GAQ +D V R+L AG++
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83
>UNIPROTKB|P66444 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:170187
"Streptococcus pneumoniae TIGR4" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AE005672 GenomeReviews:AE005672_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:FSKAGIM PIR:H95089 RefSeq:NP_345273.1
ProteinModelPortal:P66444 EnsemblBacteria:EBSTRT00000025469
GeneID:930725 KEGG:spn:SP_0775 PATRIC:19705913 Uniprot:P66444
Length = 90
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 40/80 (50%), Positives = 49/80 (61%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDG---QDSG--------KRMGLNFDRVKYWL 49
M V+IRL R G K KPFYR+ ADSRSPRDG + G ++ L DRV WL
Sbjct: 1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAENQVTLKEDRVLAWL 60
Query: 50 SVGAQPSDPVQRILFRAGLL 69
+ GAQPSD V+ IL + G+L
Sbjct: 61 ANGAQPSDTVRNILSKEGVL 80
>UNIPROTKB|F1SU70 [details] [associations]
symbol:LOC100739849 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:YNKRARD EMBL:CU639423 EMBL:FP476096 RefSeq:XP_003133122.1
RefSeq:XP_003483547.1 Ensembl:ENSSSCT00000011270
Ensembl:ENSSSCT00000024853 GeneID:100516466 GeneID:100739849
KEGG:ssc:100516466 KEGG:ssc:100739849 Uniprot:F1SU70
Length = 135
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA S+ PRDG+ G+++ LNFDR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIG 78
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMV 75
GA S PV+++L +G P PM+
Sbjct: 79 CGAHLSKPVEKLLGLSGFYPLHPMM 103
>UNIPROTKB|P82915 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9913 "Bos taurus" [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720
EMBL:BC118470 IPI:IPI00699568 RefSeq:NP_001068942.1
UniGene:Bt.88967 ProteinModelPortal:P82915 IntAct:P82915
STRING:P82915 PRIDE:P82915 Ensembl:ENSBTAT00000001255 GeneID:510899
KEGG:bta:510899 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 InParanoid:P82915 OMA:YNKRARD OrthoDB:EOG4D7Z73
NextBio:20869667 Uniprot:P82915
Length = 135
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA ++ PRDG+ G+++ LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIG 78
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMV 75
GA S PV+++L +G P PMV
Sbjct: 79 CGAHLSKPVEKLLGLSGFFPLHPMV 103
>RGD|1582995 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 RGD:1582995
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 EMBL:CH474061
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD OrthoDB:EOG4D7Z73
IPI:IPI00362092 RefSeq:NP_001102988.1 UniGene:Rn.8846
Ensembl:ENSRNOT00000009207 GeneID:688912 KEGG:rno:688912
UCSC:RGD:1582995 NextBio:737514 Uniprot:D4A7X1
Length = 135
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA ++ PRDG+ G+++ LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMV 75
GAQ S P++++L +G P PM+
Sbjct: 79 CGAQLSKPMEKLLGLSGFFPLHPMM 103
>UNIPROTKB|Q9Y3D3 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 GermOnline:ENSG00000182180 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 CTD:51021
HOVERGEN:HBG017758 OrthoDB:EOG4D7Z73 EMBL:AF151890 EMBL:AB049948
EMBL:BC021106 EMBL:AB051351 IPI:IPI00032872 RefSeq:NP_057149.1
UniGene:Hs.180312 ProteinModelPortal:Q9Y3D3 SMR:Q9Y3D3
IntAct:Q9Y3D3 STRING:Q9Y3D3 PhosphoSite:Q9Y3D3 DMDM:13633952
PaxDb:Q9Y3D3 PRIDE:Q9Y3D3 DNASU:51021 Ensembl:ENST00000372945
GeneID:51021 KEGG:hsa:51021 UCSC:uc001jts.1 GeneCards:GC10M075008
HGNC:HGNC:14048 MIM:609204 MIM:610498 neXtProt:NX_Q9Y3D3
Orphanet:254920 PharmGKB:PA31000 InParanoid:Q9Y3D3 GenomeRNAi:51021
NextBio:53544 ArrayExpress:Q9Y3D3 Bgee:Q9Y3D3 CleanEx:HS_MRPS16
Genevestigator:Q9Y3D3 Uniprot:Q9Y3D3
Length = 137
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA ++ PRDG+ G+++ LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMV 75
GA S P++++L AG P PM+
Sbjct: 79 CGAHLSKPMEKLLGLAGFFPLHPMM 103
>UNIPROTKB|J9NS54 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
GeneTree:ENSGT00390000014309 EMBL:AAEX03002830
Ensembl:ENSCAFT00000049758 Uniprot:J9NS54
Length = 199
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA ++ PRDG+ G+++ LN +R+++W+
Sbjct: 83 IRLALSGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKIVALNLERIRHWIG 142
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMV 75
GA S PV+R+L +G P PM+
Sbjct: 143 CGAHLSKPVERLLGLSGFFPLHPMM 167
>UNIPROTKB|E1C907 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AADN02040962
IPI:IPI00589221 RefSeq:XP_001233312.1 RefSeq:XP_003642554.1
RefSeq:XP_003643364.1 UniGene:Gga.10148 Ensembl:ENSGALT00000000703
GeneID:100858706 GeneID:769996 KEGG:gga:100858706 KEGG:gga:769996
NextBio:20920220 Uniprot:E1C907
Length = 136
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 3 VRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------DS-----GKRM-GLNFDRVKYW 48
V IR A GC N+PFYR++AA S+ RDG+ D G+++ GLN +R+++W
Sbjct: 17 VVIRFALGGCTNRPFYRIVAAHSKRARDGKYLEQLGCLDPLPNAHGEKVAGLNLERLRHW 76
Query: 49 LSVGAQPSDPVQRILFRAGLLPPPPM 74
L GAQ S P +++L AG LP PM
Sbjct: 77 LGCGAQLSRPAEKLLGLAGFLPLHPM 102
>MGI|MGI:1913492 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 MGI:MGI:1913492 GO:GO:0005739 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 OMA:YNKRARD OrthoDB:EOG4D7Z73 EMBL:AB049949
EMBL:AK019243 EMBL:AK005206 EMBL:BC024656 IPI:IPI00132147
RefSeq:NP_079716.1 UniGene:Mm.23747 ProteinModelPortal:Q9CPX7
SMR:Q9CPX7 STRING:Q9CPX7 PhosphoSite:Q9CPX7 PaxDb:Q9CPX7
PRIDE:Q9CPX7 Ensembl:ENSMUST00000061444 GeneID:66242 KEGG:mmu:66242
UCSC:uc007sjp.1 InParanoid:Q9CPX7 NextBio:321067 Bgee:Q9CPX7
CleanEx:MM_MRPS16 Genevestigator:Q9CPX7
GermOnline:ENSMUSG00000049960 Uniprot:Q9CPX7
Length = 135
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA ++ PRDG+ G+++ LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMV 75
GA S P++++L +G P PM+
Sbjct: 79 CGAHLSKPMEKLLGLSGFFPLHPMM 103
>TIGR_CMR|ECH_0192 [details] [associations]
symbol:ECH_0192 "ribosomal protein S16" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:YP_507016.1
ProteinModelPortal:Q2GHR7 SMR:Q2GHR7 STRING:Q2GHR7 GeneID:3927148
KEGG:ech:ECH_0192 PATRIC:20575921
BioCyc:ECHA205920:GJNR-192-MONOMER Uniprot:Q2GHR7
Length = 87
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 39/83 (46%), Positives = 51/83 (61%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ--DS-G-------KRMGL----NFDRVK 46
M V+IRLARFG K +PFYRV+ ADSR RDG+ +S G K L DR+K
Sbjct: 1 MSVKIRLARFGAKKRPFYRVVVADSRVARDGKFIESLGFYNPMLPKEHELFVKVKVDRLK 60
Query: 47 YWLSVGAQPSDPVQRILFRAGLL 69
YWLSVGAQ +D + + + G++
Sbjct: 61 YWLSVGAQATDRISWFI-KKGII 82
>TIGR_CMR|BA_3982 [details] [associations]
symbol:BA_3982 "ribosomal protein S16" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:NP_846224.1
RefSeq:YP_020621.1 RefSeq:YP_029946.1 ProteinModelPortal:Q81WJ3
DNASU:1086780 EnsemblBacteria:EBBACT00000008723
EnsemblBacteria:EBBACT00000015777 EnsemblBacteria:EBBACT00000020497
GeneID:1086780 GeneID:2820040 GeneID:2848276 KEGG:ban:BA_3982
KEGG:bar:GBAA_3982 KEGG:bat:BAS3695 OMA:FSKAGIM
BioCyc:BANT260799:GJAJ-3753-MONOMER
BioCyc:BANT261594:GJ7F-3870-MONOMER Uniprot:Q81WJ3
Length = 90
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/80 (41%), Positives = 45/80 (56%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDG---QDSGK--------RMGLNFDRVKYWL 49
M V+IRL R G K PFYRV+ ADSRSPRDG ++ G + +N + WL
Sbjct: 1 MAVKIRLKRMGAKKTPFYRVVVADSRSPRDGRFIEEIGTYNPVAQPAEVKINEEAALKWL 60
Query: 50 SVGAQPSDPVQRILFRAGLL 69
GA+PSD V+ + G++
Sbjct: 61 GNGAKPSDTVRNLFSNQGIM 80
>TIGR_CMR|NSE_0123 [details] [associations]
symbol:NSE_0123 "ribosomal protein S16" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
OMA:DSRNSRD RefSeq:YP_506023.1 ProteinModelPortal:Q2GES3
STRING:Q2GES3 GeneID:3932034 KEGG:nse:NSE_0123 PATRIC:22680351
ProtClustDB:CLSK2528008 BioCyc:NSEN222891:GHFU-159-MONOMER
Uniprot:Q2GES3
Length = 85
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------------DSGKRMGLNFDRVKY 47
+++IRLARFG K +P+Y+++ A+S SPRDG+ D R+ L+ +R++Y
Sbjct: 7 MLKIRLARFGRKKRPYYKIVVANSSSPRDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRY 66
Query: 48 WLSVGAQPSDPVQRIL 63
W SVGA+P++ V + +
Sbjct: 67 WTSVGAKPTERVAKFV 82
>TIGR_CMR|CHY_1433 [details] [associations]
symbol:CHY_1433 "ribosomal protein S16" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_360265.1
ProteinModelPortal:Q3AC69 STRING:Q3AC69 GeneID:3727827
KEGG:chy:CHY_1433 PATRIC:21275997 OMA:HYDPRKT
BioCyc:CHYD246194:GJCN-1432-MONOMER Uniprot:Q3AC69
Length = 86
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------DSGKRMG---LNFDRVKYWL 49
M V+IRL R G KN PFYRV+ AD+RSPRDG+ D K+ +N ++ WL
Sbjct: 1 MAVKIRLKRMGAKNNPFYRVVVADARSPRDGRVIDEIGYYDPVKQPAAVVINEEKALDWL 60
Query: 50 SVGAQPSDPVQRILFRAGLL 69
GAQ ++ + + +AG+L
Sbjct: 61 KKGAQLTETARALFRKAGVL 80
>TIGR_CMR|GSU_0643 [details] [associations]
symbol:GSU_0643 "ribosomal protein S16" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 OMA:FSKAGIM
RefSeq:NP_951700.2 ProteinModelPortal:P62230 GeneID:2685473
KEGG:gsu:GSU0643 PATRIC:22024033 BioCyc:GSUL243231:GH27-653-MONOMER
Uniprot:P62230
Length = 95
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 4 RIRLARFGCKNKPFYRVMAADSRSPRDGQ--------DSGKR-MGLNFDRVKY--WLSVG 52
+IRLAR G K KPFY+++ AD RS RDG+ D + + F+ K WL G
Sbjct: 11 KIRLARAGAKKKPFYQIIVADVRSRRDGRFIENVGTYDPNQNPAAVKFEEAKTLEWLGKG 70
Query: 53 AQPSDPVQRILFRAGL 68
AQP+D V++IL +AG+
Sbjct: 71 AQPTDTVKQILKKAGI 86
>TIGR_CMR|APH_0054 [details] [associations]
symbol:APH_0054 "ribosomal protein S16" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959
RefSeq:YP_504687.1 ProteinModelPortal:Q2GLR4 STRING:Q2GLR4
GeneID:3930190 KEGG:aph:APH_0054 PATRIC:20948658 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:KRMGAHK ProtClustDB:PRK00040
BioCyc:APHA212042:GHPM-92-MONOMER Uniprot:Q2GLR4
Length = 96
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ------------DSGKR--MGLNFDRVK 46
M V+IRL R G K KPFYR++ ADSR RDG+ + G + +N +R+
Sbjct: 1 MSVKIRLMRLGAKKKPFYRIVVADSRVQRDGKCIEQIGFYNPMVECGAPGFLKVNAERLG 60
Query: 47 YWLSVGAQPSDPV 59
YWL VGAQP+D V
Sbjct: 61 YWLGVGAQPTDRV 73
>UNIPROTKB|A6ND22 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
IPI:IPI00643459 ProteinModelPortal:A6ND22 SMR:A6ND22 STRING:A6ND22
PRIDE:A6ND22 Ensembl:ENST00000372940 ArrayExpress:A6ND22
Bgee:A6ND22 Uniprot:A6ND22
Length = 99
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA ++ PRDG+ G+++ LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 51 VGAQPSDPVQRIL 63
GA S P++++L
Sbjct: 79 CGAHLSKPMEKLL 91
>UNIPROTKB|B4E032 [details] [associations]
symbol:MRPS16 "cDNA FLJ58442, highly similar to 28S
ribosomal protein S16, mitochondrial (S16mt)" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
EMBL:AK303204 IPI:IPI00909954 SMR:B4E032 STRING:B4E032
Ensembl:ENST00000416782 OMA:CIFAKAY Uniprot:B4E032
Length = 123
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGQ-------------DSGKRM-GLNFDRVKYWLS 50
IRLA GC N+PFYR++AA ++ PRDG+ G+++ LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 51 VGAQPSDPVQRIL 63
GA S P++++L
Sbjct: 79 CGAHLSKPMEKLL 91
>UNIPROTKB|P66435 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0005886 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:BX842581 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
PIR:H70927 RefSeq:NP_217425.1 RefSeq:NP_337489.1
RefSeq:YP_006516362.1 ProteinModelPortal:P66435 SMR:P66435
PRIDE:P66435 EnsemblBacteria:EBMYCT00000002684
EnsemblBacteria:EBMYCT00000069640 GeneID:13317702 GeneID:888631
GeneID:925301 KEGG:mtc:MT2977 KEGG:mtu:Rv2909c KEGG:mtv:RVBD_2909c
PATRIC:18128314 TubercuList:Rv2909c OMA:KMREPHY
ProtClustDB:PRK14520 Uniprot:P66435
Length = 162
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMGLNFDRVKYWL 49
M V+I+L R G P YRV AD+R+ RDG+ + + +N +R +YWL
Sbjct: 1 MAVKIKLTRLGKIRNPQYRVAVADARTRRDGRAIEVIGRYHPKEEPSLIEINSERAQYWL 60
Query: 50 SVGAQPSDPVQRIL 63
SVGAQP++PV ++L
Sbjct: 61 SVGAQPTEPVLKLL 74
>ZFIN|ZDB-GENE-041010-123 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein S16"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 ZFIN:ZDB-GENE-041010-123 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 CTD:51021 HOVERGEN:HBG017758 EMBL:BC083390
IPI:IPI00507006 RefSeq:NP_001006030.1 UniGene:Dr.13763
ProteinModelPortal:Q5XJB4 PRIDE:Q5XJB4 GeneID:450009
KEGG:dre:450009 InParanoid:Q5XJB4 NextBio:20832992
ArrayExpress:Q5XJB4 Bgee:Q5XJB4 Uniprot:Q5XJB4
Length = 129
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 3 VRIRLARFGCKNKPFYRVMAADSRSPRDGQ--------D------SGKRMGLNFDRVKYW 48
V IRLA G N+PFYR++AA ++ RDG+ D + K + N++R+K+W
Sbjct: 17 VVIRLALGGATNRPFYRIVAAYNKRARDGKYLEQVGSYDPLPNIHNEKLVAFNYERIKHW 76
Query: 49 LSVGAQPSDPVQRILFRAGLLPPPPM 74
++ GA + PV ++L AG P PM
Sbjct: 77 IACGAHTTKPVAKLLGLAGFFPLHPM 102
>TIGR_CMR|DET_0568 [details] [associations]
symbol:DET_0568 "ribosomal protein S16" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
OMA:KRMGAHK ProtClustDB:PRK00040 RefSeq:YP_181311.1
ProteinModelPortal:Q3Z8Y8 STRING:Q3Z8Y8 GeneID:3230124
KEGG:det:DET0568 PATRIC:21608205 BioCyc:DETH243164:GJNF-568-MONOMER
Uniprot:Q3Z8Y8
Length = 82
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDG-----------QDSGKRMGLNFDRVKYWLS 50
+++IRL R G KP YR++ ++RSPRD + + + +N ++ YW+
Sbjct: 1 MLKIRLTRIGAPKKPCYRIIVTEARSPRDATYTDLVGTYNPMTNPETVVINAEKALYWIG 60
Query: 51 VGAQPSDPVQRILFRAGLL 69
GAQP+D V R+L +AG++
Sbjct: 61 KGAQPTDTVARLLKKAGVV 79
>TIGR_CMR|CPS_4069 [details] [associations]
symbol:CPS_4069 "ribosomal protein S16" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
RefSeq:YP_270724.1 ProteinModelPortal:Q47WU8 SMR:Q47WU8
STRING:Q47WU8 GeneID:3519834 KEGG:cps:CPS_4069 PATRIC:21471013
OMA:DSRNSRD BioCyc:CPSY167879:GI48-4082-MONOMER Uniprot:Q47WU8
Length = 81
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDG-------------QDSGKRMGLNFDRVKYW 48
+V IRLAR G K +PFY+V+ ADSR+ RDG Q +++ L+ DR+ +W
Sbjct: 1 MVTIRLARGGAKKRPFYQVVVADSRNSRDGRFIEKVGFFNPTAQGQAEKLRLDLDRITHW 60
Query: 49 LSVGAQPSDPVQRIL 63
+ GA SD V +++
Sbjct: 61 VGQGATVSDRVAKLV 75
>FB|FBgn0033907 [details] [associations]
symbol:mRpS16 "mitochondrial ribosomal protein S16"
species:7227 "Drosophila melanogaster" [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS;NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS;NAS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:AE013599 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
CTD:51021 GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AY119210
RefSeq:NP_523737.1 UniGene:Dm.2747 ProteinModelPortal:Q9V6Y3
SMR:Q9V6Y3 STRING:Q9V6Y3 PaxDb:Q9V6Y3 PRIDE:Q9V6Y3
EnsemblMetazoa:FBtr0087578 EnsemblMetazoa:FBtr0310367
EnsemblMetazoa:FBtr0310368 GeneID:36570 KEGG:dme:Dmel_CG8338
FlyBase:FBgn0033907 InParanoid:Q9V6Y3 OrthoDB:EOG4GXD48
PhylomeDB:Q9V6Y3 GenomeRNAi:36570 NextBio:799259 Bgee:Q9V6Y3
GermOnline:CG8338 Uniprot:Q9V6Y3
Length = 129
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRD-------GQ------DSGKRM-GLNFDRVKYWLS 50
IR R GC N+PFY ++ + R + G D +R+ LN +R++YWL
Sbjct: 20 IRFVRLGCTNRPFYHIVVMERRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRYWLG 79
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMVAM 77
GA S P +L AGLLP P M
Sbjct: 80 KGAHLSTPAAELLGIAGLLPIHPRTYM 106
>TIGR_CMR|CBU_0445 [details] [associations]
symbol:CBU_0445 "ribosomal protein S16" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 RefSeq:NP_819482.2 ProteinModelPortal:Q83E83
PRIDE:Q83E83 GeneID:1208329 KEGG:cbu:CBU_0445 PATRIC:17929581
OMA:DLARVDH ProtClustDB:PRK14523 BioCyc:CBUR227377:GJ7S-443-MONOMER
Uniprot:Q83E83
Length = 137
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 35/94 (37%), Positives = 48/94 (51%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGK--RMGLNFDRVKY 47
MVV IRLAR G K PFY ++ AD R PRDG+ G+ R+ L +R+ +
Sbjct: 1 MVV-IRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDIRLQLEKERISH 59
Query: 48 WLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKG 81
WL+ GAQ S V+ ++ + P RKG
Sbjct: 60 WLNQGAQTSLRVKHLIKKLEKSPEEAQKGGMRKG 93
>UNIPROTKB|P0A7T3 [details] [associations]
symbol:rpsP "30S ribosomal subunit protein S16"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IDA] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0043566 "structure-specific DNA
binding" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0003735 GO:GO:0004520 PDB:3J00 PDBsum:3J00
GO:GO:0000028 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV
PDBsum:3IZW GO:GO:0022627 GO:GO:0043566 PDB:3SFS PDB:3UOQ
PDBsum:3SFS PDBsum:3UOQ EMBL:X01818 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 PDB:4GAS PDB:4GD1 PDBsum:4GAS
PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY
PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN
PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU
PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR
PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M
PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V
PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ
PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY
PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL
PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3
PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q
PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V
PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13 PDBsum:3J18
PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB
PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9
PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2
eggNOG:COG0228 HOGENOM:HOG000246720 OMA:KRMGAHK
ProtClustDB:PRK00040 PIR:S07948 RefSeq:NP_417100.1
RefSeq:YP_490832.1 ProteinModelPortal:P0A7T3 SMR:P0A7T3
DIP:DIP-47829N IntAct:P0A7T3 MINT:MINT-1280042 PaxDb:P0A7T3
PRIDE:P0A7T3 EnsemblBacteria:EBESCT00000001904
EnsemblBacteria:EBESCT00000014322 GeneID:12930606 GeneID:947103
KEGG:ecj:Y75_p2557 KEGG:eco:b2609 PATRIC:32120617 EchoBASE:EB0908
EcoGene:EG10915 BioCyc:EcoCyc:EG10915-MONOMER
BioCyc:ECOL316407:JW2590-MONOMER EvolutionaryTrace:P0A7T3
Genevestigator:P0A7T3 Uniprot:P0A7T3
Length = 82
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMG--LNFDRVKYW 48
+V IRLAR G K +PFY+V+ ADSR+ R+G+ S K G L+ DR+ +W
Sbjct: 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHW 60
Query: 49 LSVGAQPSDPVQRIL 63
+ GA SD V ++
Sbjct: 61 VGQGATISDRVAALI 75
>UNIPROTKB|Q9KUG0 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMGL--NFDRVKYW 48
+V IRLAR G K +PFY+++ ADSR+ G+ +G+ GL + DRV +W
Sbjct: 1 MVTIRLARHGAKKRPFYQIVVADSRNSATGRFIEKVGFFNPTATGQEEGLRLDLDRVNHW 60
Query: 49 LSVGAQPSDPVQRIL 63
+S GA SD V +++
Sbjct: 61 VSQGASLSDRVAQLV 75
>TIGR_CMR|VC_0561 [details] [associations]
symbol:VC_0561 "ribosomal protein S16" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMGL--NFDRVKYW 48
+V IRLAR G K +PFY+++ ADSR+ G+ +G+ GL + DRV +W
Sbjct: 1 MVTIRLARHGAKKRPFYQIVVADSRNSATGRFIEKVGFFNPTATGQEEGLRLDLDRVNHW 60
Query: 49 LSVGAQPSDPVQRIL 63
+S GA SD V +++
Sbjct: 61 VSQGASLSDRVAQLV 75
>CGD|CAL0001930 [details] [associations]
symbol:orf19.7012 species:5476 "Candida albicans" [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
CGD:CAL0001930 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AACQ01000024 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 RefSeq:XP_720306.1
RefSeq:XP_888732.1 ProteinModelPortal:Q5AFQ6 STRING:Q5AFQ6
GeneID:3638020 GeneID:3704216 KEGG:cal:CaO19.7012
KEGG:cal:CaO19_7012 Uniprot:Q5AFQ6
Length = 173
Score = 94 (38.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 28 PRDGQDSG---KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 70
P G DSG K + L+ R KYWL +GA P+ V +L + GLLP
Sbjct: 92 PLSGNDSGLKIKDVSLDLHRTKYWLGMGAVPTPRVTWLLKKVGLLP 137
Score = 64 (27.6 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSR 26
+V+IRLARFG K++P Y ++ ++
Sbjct: 48 MVKIRLARFGRKHQPIYNIVVMKAK 72
>TIGR_CMR|SO_1357 [details] [associations]
symbol:SO_1357 "ribosomal protein S16" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:NP_716977.1
ProteinModelPortal:Q8EH72 SMR:Q8EH72 GeneID:1169178
KEGG:son:SO_1357 PATRIC:23522368 Uniprot:Q8EH72
Length = 82
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ-----------DSGKRMGLNFD--RVKYW 48
+V IRLAR G K +PFY ++ ADSR+ RDG+ G+ L D RV++W
Sbjct: 1 MVTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPLARGQEETLRLDLARVEHW 60
Query: 49 LSVGAQPSDPVQRIL 63
++ GA +D V +++
Sbjct: 61 VANGAATTDRVAKLI 75
>UNIPROTKB|F1PT11 [details] [associations]
symbol:F1PT11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:CIFAKAY EMBL:AAEX03016714 Ensembl:ENSCAFT00000014176
Uniprot:F1PT11
Length = 134
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 38/112 (33%), Positives = 56/112 (50%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDG-----QDS--------GKRM-GLNFDRVKYWLS 50
I LA C N+PFY ++AA +RS DG DS G+++ LN D++ +W+
Sbjct: 19 ILLALSDCANQPFYHIVAAHNRSS-DGCFMEHLDSCDPLPNSHGEKIVALNLDQIWHWIH 77
Query: 51 VGAQPSDPVQRILFRAGLLPPPPMVAM-----GRKGG----PRDTRPVDPMT 93
G S V++IL +G +P PM+ RKGG ++T P P T
Sbjct: 78 YGTHLSQQVEKILGLSGFVPVHPMMITYAERPQRKGGLLLAAQETDPEAPET 129
>TIGR_CMR|CJE_0810 [details] [associations]
symbol:CJE_0810 "ribosomal protein S16" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IMP]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 RefSeq:YP_178814.1 ProteinModelPortal:Q5HV71
STRING:Q5HV71 GeneID:3230760 KEGG:cjr:CJE0810 PATRIC:20043365
OMA:GWIELIG BioCyc:CJEJ195099:GJC0-825-MONOMER Uniprot:Q5HV71
Length = 75
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDG---QDSG--------KRMGLNFDRVKYWLSVGA 53
IRL R G +PFYR++ DSR RDG + G + + ++ +R+ YW SVGA
Sbjct: 4 IRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVEPEVIKVDAERLAYWKSVGA 63
Query: 54 QPSDPVQRI 62
+ SD V I
Sbjct: 64 KLSDKVASI 72
>UNIPROTKB|P0C473 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000307 InterPro:IPR020592 InterPro:IPR026994
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0009507
GO:GO:0009536 GO:GO:0006412 GO:GO:0005840 EMBL:AY522331
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 PANTHER:PTHR12919:SF3 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 ProteinModelPortal:P0C473 SMR:P0C473
PRIDE:P0C473 Gramene:P0C473 Genevestigator:P0C473 Uniprot:P0C473
Length = 85
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK---------RMGLNFDRVKYWLSVG 52
++++RL R G K + YR++A D RS R+G+D K + LN + Y+L G
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKG 60
Query: 53 AQPSDPVQRILFRA 66
AQP+ V IL +A
Sbjct: 61 AQPTRTVSDILRKA 74
>UNIPROTKB|P0C474 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000307 InterPro:IPR020592
InterPro:IPR026994 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0009507 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840
EMBL:AY522329 GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 PANTHER:PTHR12919:SF3 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 ProteinModelPortal:P0C474 SMR:P0C474
PRIDE:P0C474 Gramene:P0C474 Uniprot:P0C474
Length = 85
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK---------RMGLNFDRVKYWLSVG 52
++++RL R G K + YR++A D RS R+G+D K + LN + Y+L G
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKG 60
Query: 53 AQPSDPVQRILFRA 66
AQP+ V IL +A
Sbjct: 61 AQPTRTVSDILRKA 74
>UNIPROTKB|P12151 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC;ISS] InterPro:IPR000307 InterPro:IPR020592
InterPro:IPR026994 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0009507 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840 EMBL:X15901
EMBL:AY522330 GO:GO:0003735 PIR:JQ0264 ProtClustDB:CHL00005
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
PANTHER:PTHR12919:SF3 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
RefSeq:NP_039362.1 ProteinModelPortal:P12151 SMR:P12151
PRIDE:P12151 GeneID:3131439 KEGG:osa:3131439 Gramene:P12151
KO:K02959 Uniprot:P12151
Length = 85
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK---------RMGLNFDRVKYWLSVG 52
++++RL R G K + YR++A D RS R+G+D K + LN + Y+L G
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKG 60
Query: 53 AQPSDPVQRILFRA 66
AQP+ V IL +A
Sbjct: 61 AQPTRTVSDILRKA 74
>UNIPROTKB|Q6ENJ5 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000307 InterPro:IPR020592 InterPro:IPR026994
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0009507
GO:GO:0009536 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AP006728 RefSeq:YP_052728.1 ProteinModelPortal:Q6ENJ5
SMR:Q6ENJ5 PRIDE:Q6ENJ5 GeneID:2885960 Gramene:Q6ENJ5
ProtClustDB:CHL00005 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 PANTHER:PTHR12919:SF3 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 Uniprot:Q6ENJ5
Length = 85
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDSGK---------RMGLNFDRVKYWLSVG 52
++++RL R G K + YR++A D RS R+G+D K + LN + Y+L G
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTCLNVPAILYFLEKG 60
Query: 53 AQPSDPVQRILFRA 66
AQP+ V IL +A
Sbjct: 61 AQPTRTVSDILRKA 74
>WB|WBGene00018961 [details] [associations]
symbol:mrps-16 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 GO:GO:0005739
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:FO081078 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
HOGENOM:HOG000246720 GeneTree:ENSGT00390000014309 PIR:T30112
RefSeq:NP_001022207.1 ProteinModelPortal:Q10129 SMR:Q10129
STRING:Q10129 PaxDb:Q10129 PRIDE:Q10129 EnsemblMetazoa:F56D1.3.1
EnsemblMetazoa:F56D1.3.2 GeneID:3565469 KEGG:cel:CELE_F56D1.3
UCSC:F56D1.3.1 CTD:3565469 WormBase:F56D1.3 eggNOG:NOG243012
InParanoid:Q10129 OMA:GGHLTIH NextBio:956615 Uniprot:Q10129
Length = 147
Score = 78 (32.5 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 28 PRDGQDSGKRMGLNFDRVKYWLSV-GAQPSDPVQRILFRAGLLPPPP 73
P Q + K + LNF R+KYW+ A S PV +L +GL P P
Sbjct: 55 PLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLELLGLSGLFPIHP 101
Score = 62 (26.9 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 5 IRLARFGCKNKPFYRVMAADSRS 27
I LA FGC N+PFY V R+
Sbjct: 15 IGLALFGCTNRPFYHVCVFPDRA 37
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 164 164 0.00088 107 3 11 22 0.47 31
30 0.45 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 589 (63 KB)
Total size of DFA: 150 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.93u 0.12s 18.05t Elapsed: 00:00:01
Total cpu time: 17.93u 0.12s 18.05t Elapsed: 00:00:01
Start: Fri May 10 16:01:14 2013 End: Fri May 10 16:01:15 2013