Query 031206
Match_columns 164
No_of_seqs 145 out of 1185
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pys_P 30S ribosomal protein S 100.0 3.2E-33 1.1E-37 203.6 3.4 70 2-71 1-82 (83)
2 3bn0_A 30S ribosomal protein S 100.0 2.1E-33 7.2E-38 214.4 2.4 72 1-72 1-82 (112)
3 3r8n_P 30S ribosomal protein S 100.0 4.5E-32 1.5E-36 197.2 5.9 66 2-67 1-79 (82)
4 3bbn_P Ribosomal protein S16; 100.0 2.7E-33 9.4E-38 205.9 -4.0 73 2-74 1-82 (88)
5 1vbv_A Hypothetical protein B0 45.3 12 0.00042 27.2 2.4 13 12-24 46-58 (105)
6 1xrx_A SEQA protein; protein f 23.6 43 0.0015 22.2 2.0 33 36-68 2-38 (50)
7 1vp8_A Hypothetical protein AF 18.9 1.8E+02 0.0061 23.9 5.2 62 41-136 110-189 (201)
8 1lg7_A VSV matrix protein; vir 14.7 6.5 0.00022 32.1 -4.3 11 14-24 54-64 (182)
9 2kpj_A SOS-response transcript 12.8 67 0.0023 20.9 1.0 33 36-68 30-63 (94)
10 2w2r_A Matrix protein; viral a 10.9 10 0.00036 31.8 -4.3 12 14-25 100-111 (228)
No 1
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=99.97 E-value=3.2e-33 Score=203.63 Aligned_cols=70 Identities=46% Similarity=0.910 Sum_probs=64.9
Q ss_pred ceEEeeccCCCCCCCeeEEEEeecCCCCCCCC------------CCccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 031206 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQD------------SGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 69 (164)
Q Consensus 2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~------------~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil 69 (164)
||||||+|+|+||+|||||||||+|++|||++ .++.+.||+||++|||++||||||||++||+++|++
T Consensus 1 MvkIRL~R~G~kkrPfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~~~i~l~~eri~~Wl~~GAqptdtV~~ll~~~g~~ 80 (83)
T 3pys_P 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF 80 (83)
T ss_dssp CEEEECCCCSSTTCCCCCCEEEESSSCTTCCCSEECCCBCSSCCSTTCBCCCHHHHHHHHHTCCCBCSTTGGGTGGGCSS
T ss_pred CcEEeeecCCCCCCCeEEEEEEecCCCCCCCceeeeeEEcCCCCCCceEEEchHHHHHHHHCCCcCCHHHHHHHHHcCcc
Confidence 38999999999999999999999999999953 235899999999999999999999999999999998
Q ss_pred CC
Q 031206 70 PP 71 (164)
Q Consensus 70 ~~ 71 (164)
++
T Consensus 81 ~~ 82 (83)
T 3pys_P 81 RQ 82 (83)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 2
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=99.97 E-value=2.1e-33 Score=214.43 Aligned_cols=72 Identities=38% Similarity=0.683 Sum_probs=61.7
Q ss_pred CceEEeeccCCCCCCCeeEEEEeecCCCCCCCCC----------CccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCCC
Q 031206 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 70 (164)
Q Consensus 1 MaVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~~----------~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil~ 70 (164)
|+|+|||+|+|+|++|||||||+|+|++|||+++ ++.+.||+|||+|||++||||||||++||+++|+++
T Consensus 1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGr~IE~lG~YnP~~~~~v~ld~eri~~WL~~GAQPTdtV~~LL~~ag~~~ 80 (112)
T 3bn0_A 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVLKGVELSHRAKAILWNHGILK 80 (112)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETTTTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHTTHHH
T ss_pred CcEEehhhcCCCCCCCeEEEEEEecCCCCCCCCEeEeeeccCCCcceEEEcHHHHHHHHHcCCccCHHHHHHHHHcCCcc
Confidence 8999999999999999999999999999999542 368999999999999999999999999999999998
Q ss_pred CC
Q 031206 71 PP 72 (164)
Q Consensus 71 ~~ 72 (164)
++
T Consensus 81 ~~ 82 (112)
T 3bn0_A 81 EV 82 (112)
T ss_dssp HH
T ss_pred cc
Confidence 87
No 3
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=99.97 E-value=4.5e-32 Score=197.19 Aligned_cols=66 Identities=41% Similarity=0.727 Sum_probs=61.0
Q ss_pred ceEEeeccCCCCCCCeeEEEEeecCCCCCCC---------CC----CccEEEehHHHHHHHHCCCccCHHHHHHHHHcC
Q 031206 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQ---------DS----GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 67 (164)
Q Consensus 2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk---------~~----~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaG 67 (164)
||+|||+|+|+||+|||||||+|+|++|||+ |. ++.+.||+||++|||++||||||||++||++++
T Consensus 1 mvkIRL~R~G~kk~PfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~~~~v~l~~eri~~Wl~~GAqptdtV~~Ll~~a~ 79 (82)
T 3r8n_P 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVN 79 (82)
T ss_dssp CEEEEEEECSCTTSCCEEEEEEETTSCTTSCEEEEEEEECTTCCSSSCCCCCCHHHHHHHHHHTCEECHHHHHHHTTSC
T ss_pred CcEEhhhcCCCCCCCEEEEEEeecCCCCCCCceeeeeEEcCCCCCCcceEEEcHHHHHHHHHCCCccCHHHHHHHHhhh
Confidence 3899999999999999999999999999994 22 347999999999999999999999999999986
No 4
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.97 E-value=2.7e-33 Score=205.93 Aligned_cols=73 Identities=37% Similarity=0.570 Sum_probs=67.0
Q ss_pred ceEEeeccCCCCCCCeeEEEEeecCCCCCCCC---------CCccEEEehHHHHHHHHCCCccCHHHHHHHHHcCCCCCC
Q 031206 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQD---------SGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 72 (164)
Q Consensus 2 aVKIRLaR~G~KnrPFYRIVVaDsRspRDGk~---------~~k~I~Ln~eRIkyWL~~GAQPTdtV~~LLkkaGil~~~ 72 (164)
||||||+|+|+||+|||||||||+|++|||+. ..+.+.||+||++|||++||||||||++||+++|+++++
T Consensus 1 mvkIRL~R~G~KkrPfYrIVvadsr~~RDGr~IE~lG~YnP~~~~~~l~~eri~~Wl~~GAqpTdtV~~ll~~~g~~~~~ 80 (88)
T 3bbn_P 1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGAQPTETVYDILKRAEVFKEF 80 (88)
T ss_dssp CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTSSCBCCCTTTSSSSTTSSCEECTTTSSSSTTTTSSSCC
T ss_pred CeEEecccCCCCCCCeEEEEEEecCCCCCCCcEeEEEeccCCCCceEEcHHHHHHHHHcCCccCHHHHHHHHHcCCcccc
Confidence 48999999999999999999999999999954 346799999999999999999999999999999999988
Q ss_pred Cc
Q 031206 73 PM 74 (164)
Q Consensus 73 p~ 74 (164)
+.
T Consensus 81 ~~ 82 (88)
T 3bbn_P 81 RL 82 (88)
T ss_dssp --
T ss_pred cc
Confidence 74
No 5
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=45.29 E-value=12 Score=27.25 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.2
Q ss_pred CCCCCeeEEEEee
Q 031206 12 CKNKPFYRVMAAD 24 (164)
Q Consensus 12 ~KnrPFYRIVVaD 24 (164)
.|++|||+|+|-|
T Consensus 46 ~~~QPfYhVL~e~ 58 (105)
T 1vbv_A 46 LRAAPWYHVVMED 58 (105)
T ss_dssp --CCCEEEEEEEC
T ss_pred cCCCCceEEEEeC
Confidence 4899999988753
No 6
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=23.64 E-value=43 Score=22.17 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=25.1
Q ss_pred ccEEEehHHHHHHHHC----CCccCHHHHHHHHHcCC
Q 031206 36 KRMGLNFDRVKYWLSV----GAQPSDPVQRILFRAGL 68 (164)
Q Consensus 36 k~I~Ln~eRIkyWL~~----GAQPTdtV~~LLkkaGi 68 (164)
|.|.+|-|-.+|-.++ |--+|+..++||...+-
T Consensus 2 K~IEvDdelY~YIas~t~~igEsaSdiLRRll~l~~~ 38 (50)
T 1xrx_A 2 KTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAA 38 (50)
T ss_dssp EEEEECHHHHHHHHTTCSSTTCCHHHHHHHHHTC---
T ss_pred CceeecHHHHHHHHHhchhhccCHHHHHHHHHcCCcc
Confidence 5689999999998876 77788888888876553
No 7
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=18.91 E-value=1.8e+02 Score=23.90 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=45.1
Q ss_pred ehHHHHHHHHCCCccCHHHHHHHH------------------HcCCCCCCCcccccccCCCCCCCCCCCCCccccCCCcc
Q 031206 41 NFDRVKYWLSVGAQPSDPVQRILF------------------RAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTN 102 (164)
Q Consensus 41 n~eRIkyWL~~GAQPTdtV~~LLk------------------kaGil~~~p~~~~~~kg~~~~~~p~~~~~~~~~~~~~~ 102 (164)
..||.-.|.--|..|++-+++.|+ -+|++|. ..... -||+
T Consensus 110 gveR~is~kfGG~~p~eiiA~tLR~~fgqG~KV~vEi~lMAaDAGlIp~-eeVIA--iGGT------------------- 167 (201)
T 1vp8_A 110 GLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPI-EEVVA--VGGR------------------- 167 (201)
T ss_dssp TTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSCS-SCEEE--EECS-------------------
T ss_pred chhHHHHHhcCCCCHHHHHHHHHHHHhcCCceEEEEEeeeecccCCCCc-ceEEE--Eccc-------------------
Confidence 468888888889999999999999 5677776 22111 1222
Q ss_pred cCCCCCcccccccCCcceeeeeeccccccceeec
Q 031206 103 AKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQ 136 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (164)
-.|.|-|.|.--+.|++++.|+
T Consensus 168 ------------~~GaDTAlVirPAhs~~ffdl~ 189 (201)
T 1vp8_A 168 ------------SRGADTAVVIRPAHMNNFFDAE 189 (201)
T ss_dssp ------------SSSCCEEEEEECCCTTSGGGCE
T ss_pred ------------cCCcceEEEEeecccCCchhee
Confidence 1478899998888888888764
No 8
>1lg7_A VSV matrix protein; virus matrix, viral protein; 1.96A {Vesicular stomatitis virus} SCOP: d.213.1.1
Probab=14.72 E-value=6.5 Score=32.08 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=8.2
Q ss_pred CCCeeEEEEee
Q 031206 14 NKPFYRVMAAD 24 (164)
Q Consensus 14 nrPFYRIVVaD 24 (164)
||||||+|+.-
T Consensus 54 KrpFYr~i~~~ 64 (182)
T 1lg7_A 54 KRPFYKILAFL 64 (182)
T ss_dssp GHHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 78888887643
No 9
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=12.83 E-value=67 Score=20.95 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=22.5
Q ss_pred ccEEEehHHHHHHHHCCCccCH-HHHHHHHHcCC
Q 031206 36 KRMGLNFDRVKYWLSVGAQPSD-PVQRILFRAGL 68 (164)
Q Consensus 36 k~I~Ln~eRIkyWL~~GAQPTd-tV~~LLkkaGi 68 (164)
+.+.+....|..|..-...|+. ++.+|....|+
T Consensus 30 ~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v 63 (94)
T 2kpj_A 30 KSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNI 63 (94)
T ss_dssp HHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTC
T ss_pred HHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCc
Confidence 4466778889999987777764 45555555554
No 10
>2w2r_A Matrix protein; viral assembly, viral morphogenesis, VSV, polymer, viral protein; HET: MSE; 1.83A {Vesicular stomatitis virus}
Probab=10.89 E-value=10 Score=31.81 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=8.7
Q ss_pred CCCeeEEEEeec
Q 031206 14 NKPFYRVMAADS 25 (164)
Q Consensus 14 nrPFYRIVVaDs 25 (164)
||||||||+.-.
T Consensus 100 KrpFYr~i~~~~ 111 (228)
T 2w2r_A 100 KRPFYKIIALIG 111 (228)
T ss_dssp GHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 678888887543
Done!