BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031207
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
HPL+ + FWY+RRTPG T + SYE NIK+I F++VE FW Y H+ RP L +D
Sbjct: 15 HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVRRRLA 143
HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+ L
Sbjct: 75 HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLG 118
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL K+ WYT+ P V S+ D ++ + F TVE FW ++ P LP +D H
Sbjct: 37 HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFK 126
+F+ +RP WED AN GGKW + +
Sbjct: 95 VFRNDVRPEWEDEANAKGGKWSFQLR 120
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL N + WY R++ S+ED +I F TVE FW Y H+ PS + +D
Sbjct: 70 HPLMNVWTLWYLEND---RSK-SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 125
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
LFK+ IRP+WED+AN GG+W+I K
Sbjct: 126 LFKKNIRPMWEDAANKQGGRWVITLNK 152
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL K+ WYT+ P V S+ D ++ + F TVE FW ++ P LP +D H
Sbjct: 37 HPLNTKWTLWYTK--PAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRF 125
+F+ +RP WED AN GGKW +
Sbjct: 95 VFRNDVRPEWEDEANAKGGKWSFQL 119
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+ + WY + +ED +K++ F TVE FW Y H+ S L +D +
Sbjct: 3 HPLQCHWALWYLK----ADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYY 58
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
LFKEGI+P+WED N GG+W++ K
Sbjct: 59 LFKEGIKPMWEDENNVKGGRWLVVVDK 85
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N + FW+ G Q ++ I I FSTVE FW Y ++ PS L D H
Sbjct: 2 HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFW 134
FK I P WED + NGGKW I + S FW
Sbjct: 61 CFKNKIEPKWEDPISANGGKWTISCGRGKSDTFW 94
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ ++ +++ N++ I F TVE FW Y H+ S L D
Sbjct: 37 HPLQNRWALWFFKKDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
LFK+GI P+WED N GG+W+I K
Sbjct: 93 LFKDGIEPMWEDEKNKRGGRWLITLNK 119
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N + FW+ G Q ++ I I FSTVE FW Y ++ PS L D H
Sbjct: 2 HPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFW 134
FK I P WED NGGKW I + S FW
Sbjct: 61 CFKNKIEPKWEDPICANGGKWTISCGRGKSDTFW 94
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 60 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 115
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
LFK+GI P+WED N GG+W+I K
Sbjct: 116 LFKDGIEPMWEDEKNKRGGRWLITLNK 142
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 37 HPLQNRWALWFFKNDKS----KTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 92
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
LFK+GI P+WED N GG+W+I K
Sbjct: 93 LFKDGIEPMWEDEKNKRGGRWLITLNK 119
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 11 HPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 66
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
LFK+GI P+WED N GG+W+I K
Sbjct: 67 LFKDGIEPMWEDEKNKRGGRWLITLNK 93
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL+N++ W+ + +++ N++ I F TVE FW Y H+ S L D
Sbjct: 10 HPLQNRWALWFFKNDK----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYS 65
Query: 101 LFKEGIRPLWEDSANCNGGKWIIRFKK 127
LFK+GI P+WED N GG+W+I K
Sbjct: 66 LFKDGIEPMWEDEKNKRGGRWLITLNK 92
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 41 HPLKNKFVFWYTRRTPGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDL 99
H L+N + FW+ TP ++ Q ++ +++ I FSTVE FW Y ++ P L D
Sbjct: 3 HLLENSWTFWFD--TPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 100 HLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFW 134
+ FK I P WED NGGKW + K S W
Sbjct: 61 YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSW 95
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 41 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLH 100
HPL++ + ++ + R +++ ++K+ FST+E FW H RP + DL+
Sbjct: 10 HPLQDSWSYYLFQ----FRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 101 LFKEGIRPLWEDSANCNGGKWII 123
+FK I P WED N NGG+W+I
Sbjct: 66 MFKSDIMPKWEDPKNENGGRWLI 88
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 42 PLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHL 101
PL + + FW R PG T N+KKI TV+ FW Y ++ + LP HL
Sbjct: 31 PLHSPWTFWLDRSLPGA-TAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHL 89
Query: 102 FKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLV 138
+ RPLWE+ +N GG W ++ K + W++L+
Sbjct: 90 MRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELL 126
>pdb|1E3A|A Chain A, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
pdb|1GK9|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 260
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 GKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQ 155
GK ++F K + +W D +R ++A S P+ + ILQ
Sbjct: 59 GKDFVKFDKDIRRNYWPDAIRAQIAALS-PEDMSILQ 94
>pdb|1GKF|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 260
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 GKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQ 155
GK ++F K + +W D +R ++A S P+ + ILQ
Sbjct: 59 GKDFVKFDKDIRRNYWPDAIRAQIAALS-PEDMSILQ 94
>pdb|1KEC|A Chain A, Penicillin Acylase Mutant With Phenyl Proprionic Acid
Length = 209
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 GKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQ 155
GK ++F K + +W D +R ++A S P+ + ILQ
Sbjct: 60 GKDFVKFDKDIRRNYWPDAIRAQIAALS-PEDMSILQ 95
>pdb|1JX9|A Chain A, Penicillin Acylase, Mutant
pdb|1K5Q|A Chain A, Penicillin Acylase, Mutant Complexed With Paa
pdb|1K5S|A Chain A, Penicillin Acylase, Mutant Complexed With Ppa
pdb|1K7D|A Chain A, Penicillin Acylase With Phenyl Proprionic Acid
Length = 209
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 GKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQ 155
GK ++F K + +W D +R ++A S P+ + ILQ
Sbjct: 60 GKDFVKFDKDIRRNYWPDAIRAQIAALS-PEDMSILQ 95
>pdb|1GM7|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 209
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 GKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQ 155
GK ++F K + +W D +R ++A S P+ + ILQ
Sbjct: 59 GKDFVKFDKDIRRNYWPDAIRAQIAALS-PEDMSILQ 94
>pdb|1PNK|A Chain A, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|A Chain A, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|A Chain A, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1AI4|A Chain A, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|A Chain A, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|A Chain A, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|A Chain A, Penicillin Acylase Complexed With Phenol
pdb|1AJN|A Chain A, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|A Chain A, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|A Chain A, Penicillin Acylase Complexed With Thiopheneacetic Acid
pdb|1FXH|A Chain A, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|A Chain A, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
pdb|1GM8|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1H2G|A Chain A, Altered Substrate Specificity Mutant Of Penicillin Acylase
Length = 209
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 GKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQ 155
GK ++F K + +W D +R ++A S P+ + ILQ
Sbjct: 59 GKDFVKFDKDIRRNYWPDAIRAQIAALS-PEDMSILQ 94
>pdb|1GM9|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 209
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 GKWIIRFKKVVSGRFWEDLVRRRLATASPPKHICILQ 155
GK ++F K + +W D +R ++A S P+ + ILQ
Sbjct: 59 GKDFVKFDKDIRRNYWPDAIRAQIAALS-PEDMSILQ 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,977,222
Number of Sequences: 62578
Number of extensions: 200094
Number of successful extensions: 376
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 23
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)