BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031208
(164 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 128/162 (79%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KIIR LS+DQLLVRKLL LC Y K D+A L+F QI+ PH FTWN MIRA +G+S Q
Sbjct: 54 KIIRNNLSDDQLLVRKLLRLCFSYQKVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQ 113
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALLLYNLMIC GF PDKFTFPFVIKAC+ A++KGKEVHG A+K GF +D F+ +TLMD
Sbjct: 114 ALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMD 173
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCGD+D RK+FDKM VRSVVSWTT ++GL A G+LD A
Sbjct: 174 LYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTA 215
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 12 DQLLVRKLLDLCSFY------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ VR ++ +F G+ D A F ++ +V +W MI + +A
Sbjct: 189 DKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFE 248
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M RP+ FT +++AC ++E G+ +H A++ GF +F+ + L+D+Y
Sbjct: 249 LFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYS 308
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ +K+F++M+ +S+ +W +MI+ L G
Sbjct: 309 KCGSIEDAKKVFEEMQKKSLATWNSMITSLGVHG 342
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 2 QKIIRYGLSND----QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
++I Y L N L L+D+ S G + A VF +++ + TWN MI +L +
Sbjct: 282 RRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSMITSLGVH 341
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFV 116
G +AL L+ M RPD TF V+ AC+ + +E G + + G + +
Sbjct: 342 GFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYGITPMLEH 401
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR------SVVSWTTMISGLAASGDL 161
+ +++LY + ++ ++ + M ++ + + W ++I A + +
Sbjct: 402 YTCMIELYTRAAMLNEVSELVNSMPMKLNSNPAAALVWPSIIDSNAENENF 452
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 124/162 (76%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KIIR+GL+ DQLL+RKL+ L S YGK +A LVF Q+ P VFTWN+MIRA TI GS
Sbjct: 47 KIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAPDVFTWNVMIRAFTIGGSPKM 106
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALLL+ M+C GF PDKFT+PFVI AC+AS A++ G H LA+K GF D++VQ+T+M+
Sbjct: 107 ALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHALAIKMGFWGDLYVQNTMMN 166
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KC +VD GRK+FDKMRVR+V +WTT+ISGL A G LD A
Sbjct: 167 LYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACGKLDTA 208
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
GK D A +F Q+ +V +W MI ++A L+ M + RP+++T +
Sbjct: 203 GKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSL 262
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++AC +++ G+ VH A+K GF + F+ + L+D+Y KCG +D R +FD M+VR++
Sbjct: 263 VRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRTL 322
Query: 146 VSWTTMISGLAASGDLDAA 164
+W TMI+ L G D A
Sbjct: 323 ATWNTMITSLGVHGYRDEA 341
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + L L+D+ S G D A VF ++ + TWN MI +L + G +AL
Sbjct: 283 LKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEAL 342
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACI 90
L++ M PD TF V+ AC+
Sbjct: 343 SLFDEMEKANEVPDAITFVGVLSACV 368
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 127/162 (78%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KII++ L+NDQLLVR+L+ + S +G+T +A LVF+Q++ P FTWNLMIR+L+++ +
Sbjct: 42 KIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSLNHKPRE 101
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALLL+ LM+ + + DKFTFPFVIKAC+AS ++ G +VHGLA+KAGF D+F Q+TLMD
Sbjct: 102 ALLLFILMLSHQPQFDKFTFPFVIKACLASSSLRLGTQVHGLAIKAGFFNDVFFQNTLMD 161
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG D GRK+FDKM RS+VSWTTM+ GL ++ LD+A
Sbjct: 162 LYFKCGKPDCGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSA 203
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D A +VF+Q+ +V +W MI A + +A L+ M + +P++FT +++A
Sbjct: 201 DSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAS 260
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ G+ VH A K GF D ++ + L+D+Y KCG + RK+FD M+ +S+ +W
Sbjct: 261 TQLGSLSMGRWVHDYAHKNGFVLDCYLGTALIDMYSKCGSLQDARKVFDVMQSKSLATWN 320
Query: 150 TMISGLAASG 159
+MI+ L G
Sbjct: 321 SMITSLGVHG 330
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G D L L+D+ S G A VF ++ + TWN MI +L + G +AL
Sbjct: 278 KNGFVLDCYLGTALIDMYSKCGSLQDARKVFDVMQSKSLATWNSMITSLGVHGCGEEALY 337
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKG 98
L+ M PD TF V+ AC + ++ G
Sbjct: 338 LFEEMEEEASVEPDAITFVGVLSACANTGNVKDG 371
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KII++ L+NDQLLVR+L+ + S +G+T +A LVF+Q++ P FTWNLMIR+L+++ +
Sbjct: 42 KIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPRE 101
Query: 63 ALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
ALLL+ LM I + + DKFTFPFVIKAC+AS +I G +VHGLA+KAGF D+F Q+TLM
Sbjct: 102 ALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLM 161
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DLY KCG D GRK+FDKM RS+VSWTTM+ GL ++ LD+A
Sbjct: 162 DLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSA 204
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D A +VF+Q+ +V +W MI A + +A L+ M + +P++FT +++A
Sbjct: 202 DSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAS 261
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ G+ VH A K GF D F+ + L+D+Y KCG + RK+FD M+ +S+ +W
Sbjct: 262 TQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWN 321
Query: 150 TMISGLAASG 159
+MI+ L G
Sbjct: 322 SMITSLGVHG 331
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G D L L+D+ S G A VF ++ + TWN MI +L + G +AL
Sbjct: 279 KNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALS 338
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKG 98
L+ M PD TF V+ AC + ++ G
Sbjct: 339 LFEEMEEEASVEPDAITFVGVLSACANTGNVKDG 372
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KIIR GLSNDQLL RKL+ L S +G+ +A+L+F QI+ P FTWNL+IRA TI+G S Q
Sbjct: 49 KIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQ 108
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL+LY M+C G DKFTFPFVIKAC L+I+ GK VHG +K GFS D+FVQ+ L+D
Sbjct: 109 ALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLID 168
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG K+F+KMRVR+VVSWTT+ISGL + GDL A
Sbjct: 169 FYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Query: 27 GKTDHALLV---FSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
G+ DH+ L + + +V +WN +I L G S++AL ++ + G P + +FP
Sbjct: 1960 GREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFP 2019
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
IK+C A + G+ H A GF D+FV S L+D+Y KCG + R +FD++ +R
Sbjct: 2020 CTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR 2079
Query: 144 SVVSWTTMISGLAASGDLDAA 164
+VVSWT+MI+G + D A
Sbjct: 2080 NVVSWTSMITGYVQNEQADNA 2100
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 26 YGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDKFT 81
Y K L+ VF + +WN MI G S +AL +++ M+ + G R + T
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
V+ AC + A+ GK +H +K ++ V ++++D+Y KCG V+ +K FD+M+
Sbjct: 2229 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 2288
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
++V SWT M++G G A
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEA 2311
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-------- 55
+I+YG S D + L+D G T AL VF ++R +V +W +I L
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 56 ------------------IDG-----SSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
I+G +AL L+ M P+++T +IKAC
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+ G+ +H A+K +++ + L+D+Y KCG + ++F+ M +S+ +W +MI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330
Query: 153 SGLAASG 159
+ L G
Sbjct: 331 TSLGVHG 337
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+ +G D + L+D+ S G+ A +F +I +V +W MI + +
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098
Query: 62 QALLLYNLMI--------CNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFS 111
ALLL+ + N D V+ AC ++ I +G VHG VK GF
Sbjct: 2099 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFD 2156
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ V +TLMD Y KCG +K+FD M + +SW +MI+ A SG
Sbjct: 2157 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 2204
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 77/166 (46%), Gaps = 10/166 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ L + + ++D+ G+ + A F +++ +V +W M+ + G + +
Sbjct: 2251 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 2310
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-----VHGLAVKAGFSRDMFVQ 117
AL ++ M+ G +P+ TF V+ AC + +E+G H ++ G
Sbjct: 2311 ALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEH----Y 2366
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++DL+ + G ++ + +M+++ V W +++ ++D
Sbjct: 2367 GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVD 2412
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G A+ VF + + TWN MI +L + G +AL L++ M +PD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 79 KFTFPFVIKACIASLAIEKG 98
TF V+ AC+ +++G
Sbjct: 358 AITFIGVLCACVHIKNVKEG 377
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KIIR GLSNDQLL RKL+ L S +G+ +A+L+F QI+ P FTWNL+IRA TI+G S Q
Sbjct: 49 KIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQ 108
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL+LY M+C G DKFTFPFVIKAC L+I+ GK VHG +K GFS D+FVQ+ L+D
Sbjct: 109 ALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLID 168
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG K+F+KMRVR+VVSWTT+ISGL + GDL A
Sbjct: 169 FYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+V +WN +I L G S++AL ++ + G P + +FP IK+C A + G+ H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
A GF D+FV S L+D+Y KCG + R +FD++ +R+VVSWT+MI+G + D
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 1225
Query: 163 AA 164
A
Sbjct: 1226 NA 1227
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
+WN MI G S +AL +++ M+ + G R + T V+ AC + A+ GK +H
Sbjct: 1319 SWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQ 1378
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K ++ V ++++D+Y KCG V+ +K FD+M+ ++V SWT M++G G A
Sbjct: 1379 VIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEA 1438
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-------- 55
+I+YG S D + L+D G T AL VF ++R +V +W +I L
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 56 ------------------IDG-----SSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
I+G +AL L+ M P+++T +IKAC
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+ G+ +H A+K +++ + L+D+Y KCG + ++F+ M +S+ +W +MI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330
Query: 153 SGLAASG 159
+ L G
Sbjct: 331 TSLGVHG 337
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+ +G D + L+D+ S G+ A +F +I +V +W MI + +
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 1225
Query: 62 QALLLYNLMI--------CNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFS 111
ALLL+ + N D V+ AC ++ I +G VHG VK GF
Sbjct: 1226 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFD 1283
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ V +TLMD Y KCG +K+FD M + +SW +MI+ A SG
Sbjct: 1284 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 1331
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 77/166 (46%), Gaps = 10/166 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ L + + ++D+ G+ + A F +++ +V +W M+ + G + +
Sbjct: 1378 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 1437
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-----VHGLAVKAGFSRDMFVQ 117
AL ++ M+ G +P+ TF V+ AC + +E+G H ++ G
Sbjct: 1438 ALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEH----Y 1493
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++DL+ + G ++ + +M+++ V W +++ ++D
Sbjct: 1494 GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVD 1539
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G A+ VF + + TWN MI +L + G +AL L++ M +PD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 79 KFTFPFVIKACIASLAIEKG 98
TF V+ AC+ +++G
Sbjct: 358 AITFIGVLCACVHIKNVKEG 377
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/163 (57%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR+ L++DQLL+RKL + S YGK D+A LVF Q+ P +FTWN+MIRA G +
Sbjct: 42 RIIRFRLTHDQLLIRKLCQISSSYGKIDYASLVFDQLNDPDIFTWNVMIRAYNTSGLPQK 101
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++ L+ MIC GF PDKFT+PFVI ACIAS I+ G+ HGLA+K GF D++VQ+ +M+
Sbjct: 102 SIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMN 161
Query: 123 LYLKC-GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY K GDVD G K+FDKMRVR+VVSWTT+I+GL A G LD A
Sbjct: 162 LYFKIGGDVDDGWKVFDKMRVRNVVSWTTVIAGLVACGKLDTA 204
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK D A VF +I +V +W MI + + ++A L+ M+ + RP++FT +I
Sbjct: 199 GKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLI 258
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC +++ G+ +H A+K GF F+ + L+D+Y KCG +D K+F M VR++
Sbjct: 259 KACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLMEVRNLA 318
Query: 147 SWTTMISGLAASG 159
+W TM++ G
Sbjct: 319 TWNTMLTSFGVHG 331
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G L L+D+ S G D A+ VF + ++ TWN M+ + + G + L
Sbjct: 278 LKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVL 337
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM-DL 123
L+ M G PD TF V+ AC+ +E G++ L + + T M L
Sbjct: 338 DLFKEMEKAGVVPDAITFVGVLSACVQINDLELGQKYFSLMTEHYSLTPILEHYTCMVGL 397
Query: 124 YLKCGDVDGGRKMFDKM 140
Y + +++ R + D M
Sbjct: 398 YTRANELNEIRTLGDTM 414
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 116/162 (71%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KIIRYGL+ DQLLVRKL+ L YGK +A LVF Q+ P VFTWN+MIRA TI GS
Sbjct: 46 KIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVFDQLNAPDVFTWNVMIRAYTIGGSPKM 105
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A LL+ M+ GF PDKFT+P VI AC+A A++ G+ H LA+K GF D++VQ+T+M+
Sbjct: 106 AFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMN 165
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KC +VD G +FDKM VR+V +WTT+I+G A G LD A
Sbjct: 166 LYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGFVACGKLDTA 207
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 79/138 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK D A +F Q+ +V +W +I ++A L+ M + RP+++T ++
Sbjct: 202 GKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLV 261
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+AC +++ G+ VH A+K GF + F+ + L+D+Y KCG++D R +FD M++R++
Sbjct: 262 RACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLA 321
Query: 147 SWTTMISGLAASGDLDAA 164
+W TMI+ L G D A
Sbjct: 322 TWNTMITSLGVHGYRDEA 339
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + L L+D+ S G D A VF ++ + TWN MI +L + G +AL
Sbjct: 281 LKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYRDEAL 340
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACI 90
++ M PD TF V+ AC+
Sbjct: 341 SIFEEMEKANEVPDAITFVGVLSACV 366
>gi|224064796|ref|XP_002301563.1| predicted protein [Populus trichocarpa]
gi|222843289|gb|EEE80836.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 106/133 (79%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KIIR LS +QLLVRKL+ LCS YG+ D+A L+F Q++ PH FTWN +IR TI G S++
Sbjct: 62 KIIRNALSANQLLVRKLIHLCSSYGRLDYAALLFHQVQEPHTFTWNFLIRTYTIHGYSMK 121
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALLLYNLMI GF PDKFTFPFV+KAC+AS +I KGKEVHGLA+K GFS+DMF+ +TLMD
Sbjct: 122 ALLLYNLMIRRGFPPDKFTFPFVVKACLASGSIRKGKEVHGLAIKTGFSKDMFLYNTLMD 181
Query: 123 LYLKCGDVDGGRK 135
LY CGD GRK
Sbjct: 182 LYFSCGDEGYGRK 194
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 96/157 (61%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI YGL D ++ K + + + D A +VF I P F WN+MIR DG L
Sbjct: 742 KIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLS 801
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L LY+ M+ G +PDKF FPF +K+C +++GK +H V G S D+FV + L+D
Sbjct: 802 SLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVD 861
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCGD++ R +FDKM VR +VSWT+MISG A +G
Sbjct: 862 MYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNG 898
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G+ +D KL L + A VF + P+V WN +R+ + +
Sbjct: 26 QVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEE 85
Query: 63 ALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTL 120
L L++LMIC G PD FT P +KAC +E GK +HG A K DMFV S L
Sbjct: 86 TLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSAL 145
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++LY KCG + K+F++ + V WT+M++G + D + A
Sbjct: 146 VELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR D LV LL+L + G A +FS++ V +W+ MI + ++ +A
Sbjct: 232 VIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEA 291
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ MI F P+ T ++AC S +E+GK++H +AV GF D V + L+D+
Sbjct: 292 LNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDM 351
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KC D +F ++ + VVSW ++SG A +G
Sbjct: 352 YMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNG 387
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q ++ G SND + L+D+ + G + A LVF ++ + +W MI +G +
Sbjct: 842 QHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNS 901
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L ++LM +G P++ + V+ AC A+ KG+ H ++ GF D+ V + +M
Sbjct: 902 ETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIM 961
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y KCG +D R +FD+ + +V W+ MI+ G
Sbjct: 962 DMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHG 999
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ +D + L++L S G+ AL VF + + P W M+ + +AL L++
Sbjct: 135 IGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFS 194
Query: 69 LMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ + D T V+ AC L ++ G VHGL ++ F D+ + ++L++LY K
Sbjct: 195 QMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKT 254
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G +F KM + V+SW+TMI+ A + + A
Sbjct: 255 GCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEA 291
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 71/130 (54%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D A+ +F ++ V +W ++ +G + +++ ++ M+ +G +PD ++ A
Sbjct: 359 DEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAAS 418
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ +HG V++GF+ ++FV ++L++LY KCG + K+F M VR VV W+
Sbjct: 419 SELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWS 478
Query: 150 TMISGLAASG 159
+MI+ G
Sbjct: 479 SMIAAYGIHG 488
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D L+ ++D+ S G D A +F + + W+ MI + I G +A
Sbjct: 945 VIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA 1004
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ L++ M+ G RP TF V+ AC S +E+GK L + +R + + ++D
Sbjct: 1005 IDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVD 1064
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G + + + M V S W +++ +LD A
Sbjct: 1065 LLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 1107
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G +++ + L++L S G A+ +F + V W+ MI A I G +A
Sbjct: 434 VVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEA 493
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEV 101
L +++ M+ N RP+ TF ++ AC + +E+G ++
Sbjct: 494 LEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKI 532
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
++H K G D F + L LY KC + RK+FD+ +V W + +
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTL 74
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++I+ GL N + KL++ C S YG +ALL+F I P+ WN +IR L++ S
Sbjct: 46 QVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSIGKPNQIIWNNIIRGLSLSESP 105
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+ Y MI +GF P+ +T+PFV+K+C + +GK++HG +K GF D FV ++L
Sbjct: 106 ILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSL 165
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y++ G++ R +F++ +R VVS+T +I+G A+ G LD A
Sbjct: 166 ITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRGFLDQA 209
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +GL ++ ++ L+D+ + G ++AL +F I+ +V +WN+MI T +A
Sbjct: 282 IEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEA 341
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMD 122
L L+ M+ + P+ T ++ AC A+ GK +H K + + + ++L+D
Sbjct: 342 LGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNALWTSLID 401
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG+++ ++FD M +S+ SW MISG A G D A
Sbjct: 402 MYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLA 443
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D AL +F +I V +WN MI T G +AL+ + M+ P+ T V+
Sbjct: 204 GFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVL 263
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +++ G V + G ++ V + L+D+Y KCGD++ +F+ ++ ++V+
Sbjct: 264 SACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVI 323
Query: 147 SWTTMISG 154
SW MI G
Sbjct: 324 SWNVMIGG 331
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L+N+ L L+D+ + G + A +F + + +WN MI + G + A+ L+
Sbjct: 389 NLANNALWT-SLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLF 447
Query: 68 NLMICNGFRPDKFTFPFVIKAC 89
+ M G PD TF V+ AC
Sbjct: 448 SRMTKEGLVPDNITFIGVLSAC 469
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 99/162 (61%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R L D L+ +L +G T+++ LVFSQ++ P++F WN MIR L
Sbjct: 38 RLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDD 97
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY M GF P+ FT PFV+KAC L + G ++H L VKAG+ D+FV+++L+
Sbjct: 98 AIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLS 157
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY+KC + D K+FD + ++VVSWT +I+G +SG A
Sbjct: 158 LYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREA 199
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 5 IRYGLSNDQLLVRKLLD--------LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRA 53
+R GL LLV+ D L S Y K D+ AL VF I +V +W +I
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
G +A+ + ++ G +PD F+ V+ AC G+ + +G R+
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRN 249
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+FV ++L+D+Y+KCG+++ +F M + +VSW+TMI G A +G
Sbjct: 250 VFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNG 295
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + + LLD+ G + A L+FS + + +W+ MI+ +G QAL L+
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF 304
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD +T V+ AC A++ G L + F + + + L+D+Y KC
Sbjct: 305 FQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKC 364
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
G V ++F M+ + V W M+ GL+ +G A
Sbjct: 365 GSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKA 400
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
++ +L L+D+ S G A +F+ ++ WN M+ L+++G + L++L+
Sbjct: 349 SNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLV 408
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCG 128
+G RPD+ TF ++ C + +G++ +K FS ++ ++DL + G
Sbjct: 409 EKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYGCMVDLLGRAG 467
Query: 129 DVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
++ ++ + M ++ + V W ++ G D A
Sbjct: 468 LLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 99/162 (61%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R L D L+ +L +G T+++ LVFSQ++ P++F WN MIR L
Sbjct: 38 RLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDD 97
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY M GF P+ FT PFV+KAC L + G ++H L VKAG+ D+FV+++L+
Sbjct: 98 AIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLS 157
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY+KC + D K+FD + ++VVSWT +I+G +SG A
Sbjct: 158 LYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREA 199
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 5 IRYGLSNDQLLVRKLLD--------LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRA 53
+R GL LLV+ D L S Y K D+ AL VF I +V +W +I
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
G +A+ + ++ G +PD F+ V+ AC G+ + +G R+
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRN 249
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+FV ++L+D+Y+KCG+++ +F M + +VSW+TMI G A +G
Sbjct: 250 VFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNG 295
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + + LLD+ G + A L+FS + + +W+ MI+ +G QAL L+
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF 304
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD +T V+ AC A++ G L + F + + + L+D+Y KC
Sbjct: 305 FQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKC 364
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
G V ++F M+ + V W M+ GL+ +G A
Sbjct: 365 GSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKA 400
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
++ +L L+D+ S G A +F+ ++ WN M+ L+++G + L++L+
Sbjct: 349 SNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLV 408
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCG 128
+G RPD+ TF ++ C + +G++ +K FS ++ ++DL + G
Sbjct: 409 EKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYGCMVDLLGRAG 467
Query: 129 DVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
++ ++ + M ++ + V W ++ G D A
Sbjct: 468 LLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSF-YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
R+GL +D L+ +L CSF + T++ +F QI+ P++F WN MIR L + A+
Sbjct: 39 RFGLCHDNYLLNMILR-CSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAI 97
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y LM GF P+ FTFPFV+KAC L ++ G ++H L VK GF D+FV+++L+ LY
Sbjct: 98 EFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLY 157
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ K+FD + ++VVSWT +ISG G A
Sbjct: 158 AKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREA 197
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D + L+ L + G + A VF I +V +W +I G +A
Sbjct: 138 VVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREA 197
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ ++ PD FT V+ AC + G+ +H ++ G R++FV ++L+D+
Sbjct: 198 IDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDM 257
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+++ R +FD M + +VSW MI G A +G
Sbjct: 258 YAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNG 293
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ G+ + + L+D+ + G + A VF + + +W MI+ ++G +A
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M +PD +T V+ AC A+E G+ V GL + F + + + L+DL
Sbjct: 299 IDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDL 358
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + ++F M+ + V W +ISGLA +G
Sbjct: 359 YAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNG 394
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 100/162 (61%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + G+S + LL KL++L +A L+F +I ++F WN+MIR +G
Sbjct: 26 RICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYEL 85
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY M G PDKFTFPFV+KAC A A+E+GK++H +++G D+FV + L+D
Sbjct: 86 AISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALID 145
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V+ R++FDK+ R VV W +M++ + +G D +
Sbjct: 146 MYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDES 187
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +IR GL +D + L+D+ + G + A VF +I V WN M+ + +G
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPD 185
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
++L L +M NG +P + TF I A + + +GKE+HG + + GF + V++ LM
Sbjct: 186 ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALM 245
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y K G V+ R +F+ + + VVSW MI+G A G + A
Sbjct: 246 DMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEA 288
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ ++++C+ AIE GK++H + G S + + + L++LY C + +FD++
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
R++ W MI G A +G + A
Sbjct: 64 KRNLFLWNVMIRGYAWNGPYELA 86
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+G ++ + L+D+ + G + A +F + V +WN MI + G + +AL
Sbjct: 231 RHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALD 290
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDL 123
L+ M PD TF V+ AC + +GK +H ++ + F+ VQ + ++DL
Sbjct: 291 LFKEMK-GKVLPDHITFVGVLAACSHGGLLNEGK-MHFRSMISDFNIWPTVQHYTCMIDL 348
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
CG ++ K+ +MRV W ++ G+++
Sbjct: 349 LGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVE 388
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 100/166 (60%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+++ LS LV K++D+C+ YG+T++A L+F + P+ F +N MIRA + + A
Sbjct: 37 IVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLA 96
Query: 64 LLLYNLMICNGFR-----PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ +Y M+ N PDKFTFPFV+K+C + + GK+VHG K G + V++
Sbjct: 97 ITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVEN 156
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+L+++Y+KC +D ++F++M R VSW T+ISG G + A
Sbjct: 157 SLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRA 202
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F +++ +F+W ++ G AL + M G PD+ + V+
Sbjct: 197 GQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVL 256
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C A+E GK +H A KAGF R++ V + L+++Y KCG +D GR++FD+M+ R V+
Sbjct: 257 PDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVI 316
Query: 147 SWTTMISGLAASG 159
SW+TMI GLA G
Sbjct: 317 SWSTMIVGLANHG 329
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ + G D +F Q++ V +W+ MI L G + +A+ L+ M P
Sbjct: 290 LIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPS 349
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS------TLMDLYLKCGDVDG 132
TF ++ AC + G GL RD ++ L++L G +D
Sbjct: 350 IITFVGLLTACAHA-----GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQ 404
Query: 133 GRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
++ KM R W +++S + G+L A
Sbjct: 405 ALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIA 437
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L+ L + +G HA +F ++R P +F+WN MIR T G S AL L+ M+ +G
Sbjct: 58 LLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASG 117
Query: 75 FR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
R PD +T+PFVIKAC L E G +H V +GF D FVQ++LM +Y+ CG+++
Sbjct: 118 RRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVA 177
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
R++FD MR R++VSW TMI+G +G
Sbjct: 178 RRVFDLMRERTLVSWNTMINGYFKNG 203
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + G +D + L+ + G+ + A VF +R + +WN MI +G +
Sbjct: 148 RTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKE 207
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL++++ MI G PD T V+ C +E G+ VH L D+ V ++L+D
Sbjct: 208 ALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLD 267
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG++D + +F +M R VVSWTTM++G +GD +A
Sbjct: 268 MYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSA 309
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L D + LLD+ + G D A ++F ++ V +W M+ ++G + ALLL
Sbjct: 254 NLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLC 313
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+M +P+ T V+ AC + +++ G+ +HG A++ ++ V++ L+D+Y KC
Sbjct: 314 QMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKC 373
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+V+ ++F K + W +ISG +G
Sbjct: 374 NNVNLSFRVFSKTSKQRTAPWNAIISGCIHNG 405
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR L ++ ++ L+D+ + + + VFS+ WN +I +G S +A+
Sbjct: 352 IRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAI 411
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ P+ T ++ A +++ + +HG +++GF + V + L+D+Y
Sbjct: 412 ELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIY 471
Query: 125 LKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ +F+ + + + +++W+ +I+G G + A
Sbjct: 472 SKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETA 513
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
+IR G + + L+D+ S G + A +F+ I + + TW+ +I + G
Sbjct: 452 LIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGE 511
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
A+ L++ M+ +G +P++ TF ++ AC + +++G
Sbjct: 512 TAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEG 548
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 14 LLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
L++ KL+D C S +G ++A LVF QI P V+ WN MIR + + ++LLY +I
Sbjct: 26 LILSKLIDFCVDSXFGDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLI 85
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
NG+ PD FTFPFV+KAC A + GK +H VK+GF D + + L+ +Y+ C D+
Sbjct: 86 ENGYSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMK 145
Query: 132 GGRKMFDKMRVRSVVSWTTMISG 154
G K+FD + + +VV+WT +I+G
Sbjct: 146 SGLKVFDNIPIWNVVAWTCLIAG 168
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+++ +L +L++ + G A +F+++ ++ +WN MI A +AL L+
Sbjct: 233 NSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFD 292
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M +G PDK TF V+ C A+ G+ VH K G D+ + + L+D+Y K G
Sbjct: 293 MWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGG 352
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +K+F ++ R VV WT+MI+GLA GD + A
Sbjct: 353 LGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEA 387
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D LL + L VF I +V W +I + +A
Sbjct: 119 IVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEA 178
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-------SRDMFV 116
L ++ M G P++ T + C S + G+ VH KAG+ + ++ +
Sbjct: 179 LKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIIL 238
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ ++++Y KCG R +F+KM R++VSW +MI+
Sbjct: 239 ATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINA 276
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+ D L LLD+ + G A +FS ++ V W MI L + G +A
Sbjct: 328 LXKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEA 387
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS----RDMFVQS 118
L ++ M + PD T+ V+ AC +E+ K+ H + +S R+ +
Sbjct: 388 LGMFQTMHEDSSLVPDHITYIGVLFACSHVGLVEEAKK-HFRLMTEMYSIVPGREHY--G 444
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
++DL + G ++ + M ++ +S
Sbjct: 445 CMVDLLSRSGHFGEAERLMETMAIQPNIS 473
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLC---SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ GL N + KLLD C ++ +A+ VF I+ P+ +WN MIR + +
Sbjct: 1 IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL LY MI G P+ +TFPF+ K+C S A ++GK++H +K G + D+ V ++L+
Sbjct: 61 SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y + G V+ K+FD R VVS+T MI+G A+ G++D A
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKA 163
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F +I V +WN MI G +AL L+N M+ +PD+ T V+
Sbjct: 158 GNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVL 217
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C S +E G+++H GF ++ + + L+DLY KCG+++ +F+ ++ + V+
Sbjct: 218 STCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVI 277
Query: 147 SWTTMISGLA 156
SW T+I G A
Sbjct: 278 SWNTLIGGYA 287
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +G ++ LV L+DL S G+ + A +F ++ V +WN +I +A
Sbjct: 236 IDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEA 295
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLM 121
LL++ M+ G P+ T ++ AC AI+ G+ +H K G + +Q++L+
Sbjct: 296 LLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLI 355
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG+++ ++FD + +S+ S MI G A G DAA
Sbjct: 356 DMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAA 398
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ LS LV K+LDLC D+A ++F Q+ P+VF++N +IR T + A
Sbjct: 30 IVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLA 89
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++N M+ PDKFTFPFVIK+C L G++VH K G ++ L+D
Sbjct: 90 ITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALID 149
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCGD+ G +++++M R VSW ++ISG G + +A
Sbjct: 150 MYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSA 191
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A VF ++ C + +W MI G AL ++ M G PD+ + V+
Sbjct: 186 GQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVL 245
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E GK +H + K+GF ++ V + L+++Y KCG +D +F++M + V+
Sbjct: 246 PACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVI 305
Query: 147 SWTTMISGLAASGDLDAA 164
SW+TMI GLA G AA
Sbjct: 306 SWSTMIGGLANHGKGYAA 323
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ + G D A +F+Q+ V +W+ MI L G A+ ++ M G P+
Sbjct: 279 LVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPN 338
Query: 79 KFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC A L E + + V + L+DL + G V+
Sbjct: 339 GVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTI 398
Query: 138 DKMRVRS-VVSWTTMISGLAASGDLDAA 164
KM ++ +W +++S +L+ A
Sbjct: 399 LKMPMQPDSRTWNSLLSSCRIHHNLEIA 426
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 100/166 (60%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+++ LS LV K++D+C+ + +T++A L+F ++ P+ F +N MIRA + + A
Sbjct: 37 IVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLA 96
Query: 64 LLLYNLMIC-----NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ +Y M+ N PDKFTFPFV+K+C + + GK+VHG K G + V++
Sbjct: 97 ITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVEN 156
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+L+++Y+KC +D K+F++M R VSW T+ISG G + A
Sbjct: 157 SLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRA 202
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F +++ +F+W ++ G AL + M G PD+ + V+
Sbjct: 197 GQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVL 256
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E GK +H A KAGF R++ V + L+++Y KCG +D GR++FD+M R V+
Sbjct: 257 PACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVI 316
Query: 147 SWTTMISGLAASGDLDAA 164
SW+TMI GLA G A
Sbjct: 317 SWSTMIVGLANHGRAHEA 334
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ + G D +F Q+ V +W+ MI L G + +A+ L+ M P+
Sbjct: 290 LIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPN 349
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS------TLMDLYLKCGDVDG 132
TF ++ AC + + + GL RD ++ L++L G +D
Sbjct: 350 IITFVGLLSACAHAGLLNE-----GLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQ 404
Query: 133 GRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++ KM ++ + W +++S + +L+ A
Sbjct: 405 ALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIA 437
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 92/156 (58%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D ++ KL++L A L+F +I ++F WN++IR +G A+ LY
Sbjct: 105 GFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLY 164
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G PD FTFPFV+KAC A AIE G+E+H V+ G+ +D+FV + L+D+Y KC
Sbjct: 165 YQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC 224
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
G V R++FDK+ VR V W +M++ + +G DA
Sbjct: 225 GCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDA 260
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +++ G D + L+D+ + G A VF +I WN M+ A + +G
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPD 259
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L + M+ G RP + T I A + A+ +G+E+HGL+ + F V++ L+
Sbjct: 260 ACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALV 319
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG V R +F+++ V+ VVSW MI+G A G A
Sbjct: 320 DMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEA 362
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P + ++++CIA AI+ GK++H AGF D + + L++LY C + R +
Sbjct: 73 PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FD++ ++ W +I G A +G +AA
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAA 160
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A +F ++ V +WN MI + G + +AL L+ M +PD
Sbjct: 318 LVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN-RVAKPD 376
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKM 136
TF V+ AC +E+G ++ + D VQ + ++DL G +D +
Sbjct: 377 HITFVGVLSACSHGGLLEEGWMFFETMIR-DYKIDPTVQHYTCMVDLLGHSGRLDEAYNL 435
Query: 137 FDKMRV 142
+M+V
Sbjct: 436 IMQMKV 441
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KLL+LC D +A+ VF I+ P++ WN M R +
Sbjct: 55 QMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 114
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPF++K+C S A ++G+++HG +K G+ D+FV ++
Sbjct: 115 PVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTS 174
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ RK+FD+ R VVS+T +I G A+ G +++A
Sbjct: 175 LISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESA 219
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F +I V +WN MI G+ +AL L+ M+ RPD+ T V+
Sbjct: 214 GYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVV 273
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + ++LMDLY KCG+++ +F+ + + V+
Sbjct: 274 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVI 333
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 334 SWNTLIGG 341
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F + V +WN +I T +ALLL
Sbjct: 295 HGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G RP+ T ++ AC AI+ G+ +H K + ++++L+D+Y
Sbjct: 355 FQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMY 414
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ + +S+ SW MI G A G DAA
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAA 454
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+N L L+D+ + G + A VF+ I + +WN MI + G + A +++
Sbjct: 401 TNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSR 460
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M G PD TF ++ AC S ++ G+ + + + + ++DL G
Sbjct: 461 MRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSG 520
Query: 129 DVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+M + M + V W +++ G+++
Sbjct: 521 LFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVE 555
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 11/164 (6%)
Query: 6 RYGLSNDQLLVRKLLDLCSF-YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
R+GL +D L+ +L CSF + T++ +F QI+ P++F WN MIR L + A+
Sbjct: 39 RFGLCHDNYLLNMILR-CSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAI 97
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA---------GFSRDMF 115
Y LM GF P+ FTFPFV+KAC L ++ G ++H L VK G R++F
Sbjct: 98 EFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVF 157
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V ++L+D+Y KCG+++ R +FD M + +VSW MI G A +G
Sbjct: 158 VGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNG 201
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 88/139 (63%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-PDKFTFPFV 85
G HA +F ++R P +F+WN MIR T G S AL L+ M+ +G R PD +T+PFV
Sbjct: 70 GCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFV 129
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
IKAC L E G +H V +GF D FVQ++LM +Y+ CG+++ R++FD MR R++
Sbjct: 130 IKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTL 189
Query: 146 VSWTTMISGLAASGDLDAA 164
VSW TMI+G +G + A
Sbjct: 190 VSWNTMINGYFKNGCVKEA 208
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + G +D + L+ + G+ + A VF +R + +WN MI +G +
Sbjct: 148 RTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKE 207
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL++++ MI G PD T V+ C +E G+ VH L D+ V ++L+D
Sbjct: 208 ALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLD 267
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG++D + +F +M R VVSWTTM++G +GD +A
Sbjct: 268 MYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSA 309
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 78/152 (51%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L D + LLD+ + G D A ++F ++ V +W M+ ++G + ALLL
Sbjct: 254 NLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLC 313
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+M +P+ T V+ AC + +++ G+ +HG A++ ++ V++ L+D+Y KC
Sbjct: 314 QMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKC 373
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+V+ ++F K + W +ISG +G
Sbjct: 374 NNVNLSFRVFSKXSKQRTAPWNAIISGCIHNG 405
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR L ++ ++ L+D+ + + + VFS+ WN +I +G S +A+
Sbjct: 352 IRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAI 411
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ P+ T ++ A +++ + +HG +++GF + V + L+D+Y
Sbjct: 412 ELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIY 471
Query: 125 LKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ +F+ + + + +++W+ +I+G G + A
Sbjct: 472 SKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETA 513
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
+IR G + + L+D+ S G + A +F+ I + + TW+ +I + G
Sbjct: 452 LIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGE 511
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
A+ L++ M+ +G +P++ TF ++ AC + +++G
Sbjct: 512 TAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEG 548
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D ++ KL++L A L+F +I ++F WN++IR +G A+ LY
Sbjct: 105 GFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLY 164
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G PD FTFPFV+KAC A AIE G+E+H V+ G+ +D+FV + L+D+Y KC
Sbjct: 165 YQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC 224
Query: 128 GDVDGGRKMFDKMRVRS---VVSWTTMISGLAASGDLDAA 164
G V R++FDK+ VR VVSW MI+G A G A
Sbjct: 225 GCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEA 264
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P + ++++CIA AI+ GK++H AGF D + + L++LY C + R +
Sbjct: 73 PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FD++ ++ W +I G A +G +AA
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAA 160
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDG 58
+ +++ G D + L+D+ + G A VF +I V +WN MI + G
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHG 259
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ- 117
+ +AL L+ M +PD TF V+ AC +E+G ++ + D VQ
Sbjct: 260 HATEALDLFEEMN-RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIR-DYKIDPTVQH 317
Query: 118 -STLMDLYLKCGDVDGGRKMFDKMRV 142
+ ++DL G +D + +M+V
Sbjct: 318 YTCMVDLLGHSGRLDEAYNLIMQMKV 343
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ GL D + +LL CS +G HA +F QI+ P + N MI+A + G
Sbjct: 27 QVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIKAFVLKGKL 86
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ + +Y+ M+ NG PD +T P+V+KAC + G+ HG +VK GF D+FV +TL
Sbjct: 87 INTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTL 146
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y G+V R +FD+M + VSWT MISG A GD++ A
Sbjct: 147 IAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETA 190
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A ++F + W +I + + L ++ LM G PD+ ++
Sbjct: 185 GDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSIL 244
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G VH + G + + + L+D+Y KCG +D +K+FD M R +
Sbjct: 245 CACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTI 304
Query: 147 SWTTMISGLAASGDLDAA 164
W MISG+A +GD D A
Sbjct: 305 CWNAMISGMAMNGDGDNA 322
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D A +F + WN MI + ++G AL L++ M G +PD
Sbjct: 278 LIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPD 337
Query: 79 KFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF + AC S +A E + ++ + ++DL + G + +++
Sbjct: 338 DITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELI 397
Query: 138 DKMRVRS-----VVSWTTMISGLAASGDLDAA 164
KM S ++W ++S + G + A
Sbjct: 398 LKMPNSSSPTEQAIAWRALLSACCSHGQTEVA 429
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 1/163 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q ++R G D + +L+D S + DHA VF + P VF N++I+
Sbjct: 42 QVVVR-GHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFG 100
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +Y+ M G P+ +T+PFV+KAC A A +KG+ +HG AVK G D+FV + L+
Sbjct: 101 EALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDLFVGNALV 160
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC DV+ RK+FD++ R +VSW +MISG +G +D A
Sbjct: 161 AFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDA 203
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 22 LCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF--R 76
L +FY K + VF +I + +WN MI T++G A+LL+ M+ +
Sbjct: 159 LVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGG 218
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD TF V+ A + I G +H VK D V + L+ LY CG V R +
Sbjct: 219 PDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAI 278
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
FD++ RSV+ W+ +I G
Sbjct: 279 FDRISDRSVIVWSAIIRCYGTHG 301
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ + D + L+ L S G A +F +I V W+ +IR G + +A
Sbjct: 247 IVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEA 306
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ ++ G RPD F ++ AC + +E+G + G ++ + ++DL
Sbjct: 307 LALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDL 366
Query: 124 YLKCGDVDGGRKMFDKMRVR 143
+ GD++ + M ++
Sbjct: 367 LGRAGDLEKAVEFIQSMPIQ 386
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I LS Q ++ K+++ + D+A VF+Q + P F +N MIRA + +
Sbjct: 28 KSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCV 87
Query: 63 ALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ +YN M C DK+T+PFV KAC + A+EKGKEVHG+ V+ G+ D F+QS+L+
Sbjct: 88 AISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLL 147
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y+ CG++ +++FD+ + VV W +I+G A G
Sbjct: 148 NFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQG 185
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L G D A +F +I + WN +I GS + + L M + +PD
Sbjct: 249 LINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPD 308
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FT V+ AC A G VH A K G D+F+ + L+D+Y KCG + RK+FD
Sbjct: 309 RFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFD 367
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+M R+V +W ++SG A+ G ++A
Sbjct: 368 QMNERNVATWNAILSGYASHGQAESA 393
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G D L LL+ G+ +A VF + V WN +I G L +
Sbjct: 131 IVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDS 190
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLM 121
++ M+ RP++ T +I ACI S ++ G+ +HG +K R+ + +++ L+
Sbjct: 191 FGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALI 250
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+LY+KCG +DG RK+FD++ ++ V W ++I G G L+
Sbjct: 251 NLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLN 291
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ + G A VF Q+ +V TWN ++ G + A+ L++ M
Sbjct: 342 DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMR 401
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDV 130
+G RPD TF V+ AC S +E GK+ L ++ + ++DL + G +
Sbjct: 402 ESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLL 461
Query: 131 DGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
R++ M V +VV W ++S + G+++
Sbjct: 462 QEARELIKMMVVEPNVVVWGALLSACSIHGNIE 494
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 95/156 (60%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL D L+ K+L +G T+++ +F Q + P++F +N MI L ++ S ++
Sbjct: 33 LLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQES 92
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +Y+ M G PD FTFPF++KAC L + G ++HGL VKAG D FV ++L+ L
Sbjct: 93 IEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSL 152
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D K+FD + ++V +WT +ISG G
Sbjct: 153 YGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVG 188
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF + + +W+ MI+ +G +AL L+ M+ GFRPD + V+ AC
Sbjct: 200 ACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACAR 259
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A+E G L + F + + + L+D+Y KCG +D ++F MR + +V W
Sbjct: 260 LGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAA 319
Query: 152 ISGLAASGDLDAA 164
ISGLA SG + AA
Sbjct: 320 ISGLAMSGHVKAA 332
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ +L L+D+ + G+ D A VF +R + WN I L + G A L+ M
Sbjct: 281 NPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQME 340
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+G PD TF ++ AC + +++G++ + + + ++ ++DL + G +
Sbjct: 341 KSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFL 400
Query: 131 DGGRKMFDKMRVRS-VVSWTTMISG 154
D ++ M + + + W ++ G
Sbjct: 401 DEAHQLVKSMPMEANAIVWGALLGG 425
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 100/166 (60%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++++ LS LV K++D+C+ +G+T++A L+F ++ P+ F +N MIRA + + A
Sbjct: 11 VVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILA 70
Query: 64 LLLYNLMIC-----NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ ++ M+ N PDKFTFPFV+K C + GK+VHG A K G + +++
Sbjct: 71 ITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIEN 130
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+L+++Y+KC +D ++F++M R VSW T+ISG G + A
Sbjct: 131 SLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRA 176
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F +++ +F+W ++ G AL + M D+ + V+
Sbjct: 171 GQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVL 230
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E GK +H A KAGF RD+ V + L+++Y K G +D GR++F KM R V+
Sbjct: 231 PACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVI 290
Query: 147 SWTTMISGLAASG 159
SW+TMI GLA G
Sbjct: 291 SWSTMIVGLANHG 303
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 33/195 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II+ GL N Q + KL++ C S +G +ALL+F I P+ F WN MIR ++ S
Sbjct: 54 QIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSP 113
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+ Y M+ G P+ +TFPF++K+C A ++GK++HG +K G D FV ++L
Sbjct: 114 VGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSL 173
Query: 121 MDLYLKCGD-------------------------------VDGGRKMFDKMRVRSVVSWT 149
+++Y + G+ +D R++F+++ VR VSW
Sbjct: 174 INMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWN 233
Query: 150 TMISGLAASGDLDAA 164
MI+G A SG + A
Sbjct: 234 AMIAGYAQSGRFEEA 248
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +GL ++ LV L+D+ S G D A +F I + +WN+MI + S +A
Sbjct: 290 IEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEA 349
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMD 122
L L+ M + P+ TF ++ AC A++ GK +H K + + ++L+D
Sbjct: 350 LALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLID 409
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG+++ +++F M+ +S+ SW MISGLA G + A
Sbjct: 410 MYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMA 451
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F +I +WN MI G +AL + M P++ T V+
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S ++E G V G ++ + + L+D+Y KCGD+D R +F+ + + ++
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331
Query: 147 SWTTMISGLA 156
SW MI G +
Sbjct: 332 SWNVMIGGYS 341
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL+N L L+D+ + G + A VF+ ++ + +WN MI L + G + AL L+
Sbjct: 397 GLTNTSLWT-SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLK 126
M GF PD TF V+ AC + +E G++ V+ S + ++DL +
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGR 515
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
G D + M ++ + W +++ G+++
Sbjct: 516 AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVE 552
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 93/157 (59%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL D +L KL+DL + G+ HA +F + +VF WN++IRA +G
Sbjct: 87 RLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREA 146
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY M+ +G PD FT+P V+KAC A L +E G+EVH + +D+FV + ++D
Sbjct: 147 AVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVD 206
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG VD R +FD + VR V W +MI+ +G
Sbjct: 207 MYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNG 243
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+G D + ++D+ + G D A VF I WN MI A +G ++AL
Sbjct: 193 RWG--QDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALA 250
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L M NG P T + A + A+ +G+E+HG + GF ++++L+D+Y
Sbjct: 251 LCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYA 310
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G V R +F+++ R +VSW MI G G D A
Sbjct: 311 KSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEA 349
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++++C+AS ++ G+++HG + +G D + + L+DLY CG V R++FD M R+
Sbjct: 68 ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127
Query: 145 VVSWTTMISGLAASGDLDAA 164
V W +I A G +AA
Sbjct: 128 VFLWNVLIRAYAREGPREAA 147
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G L L+D+ + G A ++F Q+ + +WN MI + G + +AL
Sbjct: 292 RRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALA 351
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108
L+N M + PD TF V+ AC +E+ KE L V A
Sbjct: 352 LFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNA 395
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 33/195 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II+ GL N Q + KL++ C S +G +ALL+F I P+ F WN MIR ++ S
Sbjct: 54 QIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSP 113
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+ Y M+ G P+ +TFPF++K+C A ++GK++HG +K G D FV ++L
Sbjct: 114 VGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSL 173
Query: 121 MDLYLKCGD-------------------------------VDGGRKMFDKMRVRSVVSWT 149
+++Y + G+ +D R++F+++ VR VSW
Sbjct: 174 INMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWN 233
Query: 150 TMISGLAASGDLDAA 164
MI+G A SG + A
Sbjct: 234 AMIAGYAQSGRFEEA 248
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +GL ++ LV L+D+ S G D A +F I + +WN+MI + S +A
Sbjct: 290 IEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEA 349
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMD 122
L L+ M + P+ TF ++ AC A++ GK +H K + + ++L+D
Sbjct: 350 LALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLID 409
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG+++ +++F M+ +S+ SW MISGLA G + A
Sbjct: 410 MYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMA 451
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F +I +WN MI G +AL + M P++ T V+
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S ++E G V G ++ + + L+D+Y KCGD+D R +F+ + + ++
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331
Query: 147 SWTTMISGLA 156
SW MI G +
Sbjct: 332 SWNVMIGGYS 341
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL+N L L+D+ + G + A VF+ ++ + +WN MI L + G + AL L+
Sbjct: 397 GLTNTSLWT-SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLK 126
M GF PD TF V+ AC + +E G++ V+ S + ++DL +
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGR 515
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
G D + M ++ + W +++ G+++
Sbjct: 516 AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVE 552
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 96/157 (61%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++ +Q L KL+ L + +A +F +I ++F WN++IR +G A++LY
Sbjct: 77 GIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILY 136
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M+ G RPD FT PFV+KAC A AI +G+ +H +K+G+ RD+FV + L+D+Y KC
Sbjct: 137 HKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKC 196
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G V ++FDK+ VR V W +M++ A +G D +
Sbjct: 197 GCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDES 233
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +I+ G D + L+D+ + G A VF +I WN M+ A +G
Sbjct: 172 EYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPD 231
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+++ L M NG RP + T VI + + G+E+HG + GF + V++ L+
Sbjct: 232 ESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALI 291
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y KCG V +F+++R + VVSW +I+G A G
Sbjct: 292 DMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHG 329
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+G ++ + L+D+ + G AL +F ++R V +WN +I + G ++ AL
Sbjct: 277 RHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALD 336
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLY 124
L++ M RPD TF V+ AC +++G+ ++ L V+ G + + + ++DL
Sbjct: 337 LFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLL 395
Query: 125 LKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
CG +D + M V+ W +++ G+++ A
Sbjct: 396 GHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELA 436
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 59 SSLQALLLYNLMICNGFRPDKFT---FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
S +L + + F P T + ++++CI S A+ GK++H G + +
Sbjct: 24 SFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQD 83
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + L+ LY + R +FDK+ +++ W +I G A +G D A
Sbjct: 84 LATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNA 132
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
Query: 11 NDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
ND + R DLC F G +AL +F ++ F WN++IR T +G +A+ Y
Sbjct: 57 NDLNITR---DLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYY 113
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M C G R D FTFPFVIKAC LA+ G++VHG +K GF D++V + L+D+YLK G
Sbjct: 114 RMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIG 173
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++ K+FD+M VR +VSW +M+SG GD
Sbjct: 174 FIELAEKVFDEMPVRDLVSWNSMVSGYQIDGD 205
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 82/153 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K+I+ G D + L+D+ G + A VF ++ + +WN M+ IDG L
Sbjct: 149 KLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLS 208
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L+ + M+ G + D+F + AC + G E+H +++ D+ VQ++L+D
Sbjct: 209 SLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLID 268
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+Y KCG VD ++F+++ +++V+W MI G+
Sbjct: 269 MYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGM 301
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ G+ A VF+Q+ ++ +WN M+ A + +AL ++ ++
Sbjct: 347 VLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNE 406
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+PD T V+ A + +GK++H +K G + F+ + ++ +Y KCGD+
Sbjct: 407 PLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTA 466
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
R+ FD M + VVSW TMI A G
Sbjct: 467 REFFDGMVCKDVVSWNTMIMAYAIHG 492
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++IR L D ++ L+D+ GK D+A VF++I ++ WN MI + D +
Sbjct: 250 QVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVI- 308
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
PD T ++ +C S A+ +GK +HG A++ F + +++ L+D
Sbjct: 309 --------------PDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVD 354
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG++ +F++M +++VSW TM++ + A
Sbjct: 355 MYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEA 396
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL ++ + ++ + + G A F + C V +WN MI A I G +
Sbjct: 438 IMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTS 497
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ M GF+P+ TF ++ AC S I++G + + V+ G + ++D
Sbjct: 498 IQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLD 557
Query: 123 LYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDL 161
L + G++D + ++M V + W ++++ D+
Sbjct: 558 LLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDV 597
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 92/156 (58%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL D L+ K+L +G T+++ + Q + P++F +N MIR L ++ ++
Sbjct: 33 LLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQES 92
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +Y+ M G PD FTFPFV+KAC L E G ++H L VKAG D FV+ +L++L
Sbjct: 93 IEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINL 152
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D K+FD + ++ SWT ISG G
Sbjct: 153 YTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVG 188
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D + L++L + G D+A VF I + +W I G +A
Sbjct: 134 VVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREA 193
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ ++ G RPD F+ V+ AC + + G+ + + G R++FV + L+D
Sbjct: 194 IDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDF 253
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+++ R +FD M +++VSW++MI G A++G
Sbjct: 254 YGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNG 289
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I G+ + + L+D G + A VF + ++ +W+ MI+ +G
Sbjct: 233 EYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPK 292
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L+ M+ G +PD + V+ +C A+E G L F + + + L+
Sbjct: 293 EALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALI 352
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG +D ++F MR + V W ISGLA SG + A
Sbjct: 353 DMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDA 395
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
++ +L L+D+ + G+ D A VF +R WN I L + G AL L+ M
Sbjct: 343 DNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQM 402
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+G +PD+ TF ++ AC + +E+G+ + + + ++ ++DL + G
Sbjct: 403 EKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGC 462
Query: 130 VDGGRKMFDKMRVRS-VVSWTTMISG 154
+D ++ M + + + W ++ G
Sbjct: 463 LDEAHQLIKSMPMEANAIVWGALLGG 488
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCS---FYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+ ++I G +D +LL + F G D++L +F +I + F WN M+RA
Sbjct: 61 LSQMILTGFISDTFAASRLLKFSTDSPFIG-LDYSLQIFDRIENSNGFMWNTMMRAYIQS 119
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
S+ +ALLLY LM+ N PD +T+P V++AC L GKE+H +K GF D++VQ
Sbjct: 120 NSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQ 179
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+TL+++Y CG++ RK+FD+ V VSW ++++G GD++ A
Sbjct: 180 NTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEA 226
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
QK+ + DQ+ ++ C G + A +F + + +W+ +I
Sbjct: 359 QKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFS 418
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L L++ M RPD+ VI AC A+++GK VH K G ++ + +TL+
Sbjct: 419 ETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLL 478
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y+KCG V+ ++F+ M + V SW +I GLA +G
Sbjct: 479 DMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNG 516
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F+++ + +W+ +I +G +AL+++ M NG R D+ V+
Sbjct: 252 GQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVL 311
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++ GK +HGL ++ G + +Q+ L+ +Y G++ +K+F+ +
Sbjct: 312 SACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQI 371
Query: 147 SWTTMISGLAASGDLDAA 164
SW +MISG G ++ A
Sbjct: 372 SWNSMISGCMKCGSVEKA 389
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL + +L LLD+ G ++AL VF+ + V +WN +I L ++G ++
Sbjct: 462 IRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERS 521
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMD 122
L +++ M NG P++ TF V+ AC +++G+ + K G ++ ++D
Sbjct: 522 LDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVD 581
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
L + G ++ K+ + M + V +W ++ GD +
Sbjct: 582 LLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 622
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II +GL+N+ L + KL+ C+ G +A +F QI P+ F +N +IR +
Sbjct: 10 QIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDP 69
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+LL+ MIC+G P++FT PFV+KAC A + VHGLA+K G +FVQ+ L
Sbjct: 70 IDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNAL 129
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+ CG + RK+FD + +++VSW +MI G A G+ A
Sbjct: 130 IAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEA 173
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F I + +WN MI G+ +A LL+ M G PD FTF ++ C S
Sbjct: 145 LFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRD 204
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ G+ VH G D+ V++ L+D+Y KCG++ + +FD+ + ++VVSWT+MIS
Sbjct: 205 LDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISA 264
Query: 155 LAASGDLDAA 164
A G ++ A
Sbjct: 265 YAQHGSIEVA 274
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G + A +F Q+ +V +WN MI +G +AL L+N M + PD+ T +
Sbjct: 268 HGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSI 327
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + GK++H + + + + ++L+D+Y KCG V +F +M +++
Sbjct: 328 LAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNL 387
Query: 146 VSWTTMISGLAASG 159
VSW +I LA G
Sbjct: 388 VSWNVIIGALALHG 401
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 2 QKIIRYGLSNDQ----LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+KI Y LSN L L+D+ + G AL +F ++ ++ +WN++I AL +
Sbjct: 341 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 400
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
G L+A+ L+ M +G PD+ T ++ AC S ++ G
Sbjct: 401 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 441
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 100/163 (61%), Gaps = 7/163 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+++ LS LV K++D+C+ YG+T++A L+F + P+ F +N MIRA + + A
Sbjct: 82 IVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLA 141
Query: 64 LLLYNLMICNGFR-----PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ +Y M+ N PDKFTFPFV+K+C + + GK+VHG K G + V++
Sbjct: 142 ITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVEN 201
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVR--SVVSWTTMISGLAASG 159
+L+++Y+KC +D ++F++M R ++ SWT ++SG A G
Sbjct: 202 SLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIG 244
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
+ ++G ++ ++ L+++ D A VF ++ R +F+W ++ G
Sbjct: 188 VFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYA 247
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL + M G PD+ + V+ C A+E GK +H A KAGF R++ V + L+
Sbjct: 248 DALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALI 307
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++Y KCG +D GR++FD+M+ R V+SW+TMI GLA G
Sbjct: 308 EMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHG 345
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ + G D +F Q++ V +W+ MI L G + +A+ L+ M P
Sbjct: 306 LIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPS 365
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS------TLMDLYLKCGDVDG 132
TF ++ AC + G GL RD ++ L++L G +D
Sbjct: 366 IITFVGLLTACAHA-----GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQ 420
Query: 133 GRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
++ KM R W +++S + G+L A
Sbjct: 421 ALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIA 453
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+II+ GL N + KL++ C S +G +AL +F IR P+ WN MIR L+ S
Sbjct: 49 SQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSES 108
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
AL Y MI +G P+++TFP + K+C +GK+VH +K G + FV ++
Sbjct: 109 PFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTS 168
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y + G++ R +FDK +R VS+T +I+G A+ G LD A
Sbjct: 169 LINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEA 213
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL ++ LV L+D+ G + A +F +I+ +V +WN+MI T +AL L+
Sbjct: 291 GLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLF 350
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLYL 125
M+ + P+ TF ++ AC A++ GK VH K + + ++L+D+Y
Sbjct: 351 RRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYA 410
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD+ +++FD M +S+ +W MISG A G D A
Sbjct: 411 KCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTA 449
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F +I V +WN MI G +A+ + M P+ T V+
Sbjct: 208 GFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVL 267
Query: 87 KACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC S +++ G V G ++ + + L+D+Y+KCGD++ +F+K++ ++V
Sbjct: 268 SACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNV 327
Query: 146 VSWTTMISG 154
VSW MI G
Sbjct: 328 VSWNVMIGG 336
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ N L L+D+ + G A +F + + TWN MI + G + AL L++
Sbjct: 395 MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFS 454
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKC 127
M GF PD TF V+ AC + + G+ ++ S + ++DL+ +
Sbjct: 455 RMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRA 514
Query: 128 GDVDGGRKMFDKMRVR 143
G D + M ++
Sbjct: 515 GLFDEAETLVKNMEMK 530
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT--DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II G D + KL+D S G T +HA VF + VF WN +I+ G
Sbjct: 42 QIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYANMGPF 101
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL +YN M +G P+++T+PFV+KAC A KG+ +HG VK G D+FV +
Sbjct: 102 AEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKCGLEFDLFVGNAF 161
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y KC +++ RK+FD+M R +VSW +M+SG A+G +D A
Sbjct: 162 VAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEA 205
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 24 SFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN---GFRP 77
+FY K + + VF ++ + +WN M+ +G +A++L+ M+ + GF P
Sbjct: 163 AFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVMLFCDMLRDDGIGF-P 221
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D T V+ A I G +H VK G D V L+ LY CG + + +F
Sbjct: 222 DNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVF 281
Query: 138 DKMRVRSVVSWTTMI 152
D++ R+V+ W+ +I
Sbjct: 282 DQIPDRNVIVWSAII 296
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 63/141 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ D + L+ L S G A VF QI +V W+ +IR + G + +A
Sbjct: 249 IVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEA 308
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ ++ G D F ++ AC + E+G + G + + ++DL
Sbjct: 309 LSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGVVKGEAHYACMVDL 368
Query: 124 YLKCGDVDGGRKMFDKMRVRS 144
+ G+++ ++ M ++
Sbjct: 369 LGRAGNLEKAMELIQSMPIQP 389
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR GL D L+ + L LC+ + VF+ + P WN I+ + + S
Sbjct: 47 RIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSL 106
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M + PDKFT+P +IKAC +++G HG AV+ G D+FV ++L+D
Sbjct: 107 TVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLID 166
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG++ RK+FD+M R+VVSWT MI+G A+ DL A
Sbjct: 167 LYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 208
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 39/160 (24%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+ D ++ L+DL G+ A VF ++ +V +W MI ++A
Sbjct: 150 VRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEAR 209
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M P+K V A+ +G Y
Sbjct: 210 KLFDEM------PEK-------------------NAVSWNAIISG--------------Y 230
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+KCGD+ RKMFD+M R+VVS+TTMI G A SGD+ +A
Sbjct: 231 VKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASA 270
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGR 134
+PD+F ++ AC ++E K V K+ V + L+D+ KCG +D
Sbjct: 299 KPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRAT 358
Query: 135 KMFDKMRVRSVVSWTTMISGLAASG 159
K+F++M R ++S+ +M+ GL+ G
Sbjct: 359 KLFEEMPKRDLISYCSMMQGLSIHG 383
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
++ L+D+ + G D A +F ++ + ++ M++ L+I G QA+ L++ M+ G
Sbjct: 340 VIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEG 399
Query: 75 FRPDKFTFPFVIKACIASLAIEKG 98
PD F ++ AC + +++G
Sbjct: 400 LTPDDVAFTVILTACSRAGLVDEG 423
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KL++ C D +A+ VF I+ P++ WN M R +
Sbjct: 24 QMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 83
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPF++K+C S A +G+++HG +K G+ D++V ++
Sbjct: 84 PVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 143
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ RK+FD+ R VVS+T +I+G A+ G + +A
Sbjct: 144 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASA 188
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F +I V +WN MI G++ +AL L+ M+ RPD+ T V+ AC S +
Sbjct: 191 MFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 250
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
IE G++VH GF ++ + + L+DLY+KCG+V+ +F+ + + V+SW T+I G
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGG 310
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL G+ + A +F + V +WN +I T +ALLL
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 323
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AIE G+ +H K G + +++L+D+Y
Sbjct: 324 FQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMY 383
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ +++FD + RS+ SW MI G A G +AA
Sbjct: 384 AKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAA 423
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L+D+ + G + A VF I + +WN MI + G + A ++
Sbjct: 368 GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIF 427
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M N PD TF ++ AC S ++ G+ +
Sbjct: 428 SRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 461
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCS---FYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+ ++I G +D +LL + F G D++L +F +I + F WN M+RA
Sbjct: 49 LSQMILTGFISDTFAASRLLKFSTDSPFIG-LDYSLQIFDRIENSNGFMWNTMMRAYIQS 107
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
S+ +ALLLY LM+ N PD +T+P V++AC L GKE+H +K GF D++VQ
Sbjct: 108 NSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQ 167
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+TL+++Y CG++ RK+FD+ V VSW ++++G GD+
Sbjct: 168 NTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDM 211
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F+++ + +W+ +I +G +AL+++ M NG R D+ V+
Sbjct: 212 GQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVL 271
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM----DLYLKCGDVDGGRKMFDKMRV 142
AC ++ GK +HGL ++ G + +Q+ L+ D+Y+KCG V+ ++F+ M
Sbjct: 272 SACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEE 331
Query: 143 RSVVSWTTMISGLAASG 159
+ V SW +I GLA +G
Sbjct: 332 KGVSSWNALIIGLAVNG 348
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 4 IIRYGLSN----DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+IR G+ + L+ D+ G ++AL VF+ + V +WN +I L ++G
Sbjct: 290 VIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGL 349
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQS 118
++L +++ M NG P++ TF V+ AC +++G+ + K G ++
Sbjct: 350 VERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYG 409
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++DL + G ++ K+ + M + V +W ++ GD +
Sbjct: 410 CMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 454
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KL++ C D +A+ VF I+ P++ WN M R +
Sbjct: 9 QMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 68
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPF++K+C S A +G+++HG +K G+ D++V ++
Sbjct: 69 PVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 128
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ RK+FD+ R VVS+T +I+G A+ G + +A
Sbjct: 129 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASA 173
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +F +I V +WN MI G++ +AL L+ M+ RPD+ T V+ AC
Sbjct: 173 AQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ 232
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
S +IE G++VH GF ++ + + L+DLY+KCG+V+ +F+ + + V+SW T+
Sbjct: 233 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTL 292
Query: 152 ISG 154
I G
Sbjct: 293 IGG 295
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL G+ + A +F + V +WN +I T +ALLL
Sbjct: 249 HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 308
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AIE G+ +H K G + +++L+D+Y
Sbjct: 309 FQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMY 368
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ +++FD + RS+ SW MI G A G +AA
Sbjct: 369 AKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAA 408
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L+D+ + G + A VF I + +WN MI + G + A ++
Sbjct: 353 GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIF 412
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M N PD TF ++ AC S ++ G+ + + + + ++DL
Sbjct: 413 SRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGH 472
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
G +M + M + V W +++ G+++
Sbjct: 473 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 509
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 11/169 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R LS L +++ LC+ +G+ HA VFSQ+R P++ N MI+A + L A+
Sbjct: 37 VRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAI 96
Query: 65 LLYNLMI---------CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+Y M+ C G D+FT+PF++KAC +A++ GK+VHG V++G +
Sbjct: 97 TVYIRMLRRRPFPWISCTG--GDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAI 154
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VQ++L+++Y + GD+ RK+FD M+ R VVSW T+IS A G + A
Sbjct: 155 VQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKA 203
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A VF+ + V +W ++ T G A+ + LM GF PD + V+
Sbjct: 198 GQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVL 257
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ ++ + R+ +V + L+++Y KCG +D ++F+ M + V+
Sbjct: 258 PACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVI 317
Query: 147 SWTTMISGLAASG 159
SW+TM+ GLAA G
Sbjct: 318 SWSTMVGGLAAHG 330
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KL++ C D +A+ VF I+ P++ WN M R +
Sbjct: 9 QMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 68
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPF++K+C S A +G+++HG +K G+ D++V ++
Sbjct: 69 PVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 128
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ RK+FD+ R VVS+T +I G A+ G ++ A
Sbjct: 129 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENA 173
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A +F +I V +WN MI G+ +AL L+ M+ RPD+ T V+
Sbjct: 168 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 227
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + + L+DLY KCG+V+ +F+ + + V+
Sbjct: 228 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVI 287
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 288 SWNTLIGG 295
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F + V +WN +I T +ALLL
Sbjct: 249 HGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 308
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AI+ G+ +H K G + + ++L+D+Y
Sbjct: 309 FQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMY 368
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ +++FD M RS+ SW MI G A G +AA
Sbjct: 369 AKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAA 408
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L+ L+D+ + G + A VF + + +WN MI + G + A L+
Sbjct: 353 GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLF 412
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M NG PD TF ++ AC S ++ G+ + ++ + + ++DL
Sbjct: 413 SKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGH 472
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
CG ++M M + V W +++ +++
Sbjct: 473 CGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVE 509
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR GL D ++ + L LC+ + VF+ + P WN I+ + + S
Sbjct: 47 RIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSL 106
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M + PDKFT+P +IKAC +++G HG AV+ G D+FV ++L+D
Sbjct: 107 TVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLID 166
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG++ RK+FD+M R+VVSWT MI+G A+ DL A
Sbjct: 167 LYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 208
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + V W+ +I +G +A+ ++ M +PD+F ++
Sbjct: 265 GDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLM 324
Query: 87 KACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC ++E K V K+ V + L+D+ KCG +D K+F++M R +
Sbjct: 325 SACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDL 384
Query: 146 VSWTTMISGLAASG 159
+S+ +M+ GL+ G
Sbjct: 385 ISYCSMMQGLSIHG 398
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 39/160 (24%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+ D ++ L+DL G+ A VF ++ +V +W MI ++A
Sbjct: 150 VRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEAR 209
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M P+K V A+ +G Y
Sbjct: 210 KLFDEM------PEK-------------------NAVSWNAIISG--------------Y 230
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+KCGD+ RKMFD+M R+VVS+TTMI G A SGD+ +A
Sbjct: 231 VKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASA 270
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
++ L+D+ + G D A +F ++ + ++ M++ L+I G QA+ L++ M+ G
Sbjct: 355 VIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEG 414
Query: 75 FRPDKFTFPFVIKACIASLAIEKG 98
PD F ++ AC + +++G
Sbjct: 415 LTPDDVAFTVILTACSRAGLVDEG 438
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+GL L+ KL+DL S D+A V Q P F+WN +IRA T+ GS +L L
Sbjct: 25 HGLPLQTHLIPKLIDLHSI----DYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFL 80
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
Y M+ + +P FTFPFV+KAC ++ +G+++H ++ GF D+FV ++L+D+Y K
Sbjct: 81 YLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCK 140
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
C +D R +D M R VSW ++ISG G ++ A
Sbjct: 141 CFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKA 178
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ +LV L+D+ S G + A +F + C ++ +WN +I G +A+ LY M
Sbjct: 262 NTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMK 321
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+P++ T V+ AC A+E G+EVH + G ++ + + L+D+Y KCG +D
Sbjct: 322 AQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKID 381
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+F K + V W MI GLA GD
Sbjct: 382 DACLIFVKTSEKDVALWNAMILGLAYHGD 410
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 2/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + +L L+D+ + GK D A L+F + V WN MI L G +L
Sbjct: 357 RNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLA 416
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDLY 124
+++ M+ G +P+ TF V+ AC S +E+G+ + +A K G S + + ++DL
Sbjct: 417 VFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLL 476
Query: 125 LKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ G + ++ M + + W ++S +L+ A
Sbjct: 477 GRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELA 517
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 26 YGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNG--FRPDKFTF 82
+G+ + A +F ++ +V W MI +G ++ L L+ M+ + +P+ T
Sbjct: 172 WGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATM 231
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
++ AC E G+ + + + + L+D+Y KCGDV+ ++FD +
Sbjct: 232 VCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSC 291
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
+++ SW +I+G G L+ A
Sbjct: 292 KNLPSWNAIITGCVQGGLLEEA 313
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR GL D ++ + L LC+ + VF+ + P WN I+ + + S
Sbjct: 95 RIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSL 154
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M + PDKFT+P +IKAC +++G HG AV+ G D+FV ++L+D
Sbjct: 155 TVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLID 214
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG++ RK+FD+M R+VVSWT MI+G A+ DL A
Sbjct: 215 LYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 256
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I Y +D + RKL D ++ ++C + + M + + A
Sbjct: 244 IAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVA 303
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMD 122
++ +I +PD+F ++ AC ++E K V K+ V + L+D
Sbjct: 304 ---WSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALID 360
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ KCG +D K+F++M R ++S+ +M+ GL+ G
Sbjct: 361 MNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHG 397
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
++ L+D+ + G D A +F ++ + ++ M++ L+I G QA+ L++ M+ G
Sbjct: 354 VIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEG 413
Query: 75 FRPDKFTFPFVIKACIASLAIEKG 98
PD F ++ AC + +++G
Sbjct: 414 LTPDDVAFTVILTACSRAGLVDEG 437
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+ I GL + + +L+ S G D H+ L+FSQI CP++F WN MIR + +
Sbjct: 31 QTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDN 90
Query: 60 SLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+A++LY MI G P + FTFPF++ +C ++E G EVH +K GF D+FV++
Sbjct: 91 PREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRN 150
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ LY G+++ R +FD+ VR +VS+ TMI G A ++A
Sbjct: 151 ALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 196
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II++G +D + L+ L S +G + A +F + + ++N MI+ A
Sbjct: 137 IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 196
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA--GFSRDMFVQSTLM 121
L L+ M +G PD+FTF + C GK++H K ++ ++S ++
Sbjct: 197 LCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIV 256
Query: 122 DLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
D+Y KCG ++ ++F M +S +W++M+ G A G+++ A
Sbjct: 257 DMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVA 300
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F+ + V +W MI + G +AL L+ M G +PD+ T V+
Sbjct: 295 GEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVL 354
Query: 87 KACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM--RVR 143
AC A + GK ++ ++ G F+++ + + +MD+Y KCG +D ++F ++ ++
Sbjct: 355 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMK 414
Query: 144 SVVSWTTMISGLAASG 159
+ + +MI+GLA G
Sbjct: 415 TGFVFNSMIAGLAQHG 430
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 2 QKIIRYGLSN-DQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDG 58
+ I G+ N + +L ++D+ + G D AL +F ++ F +N MI L G
Sbjct: 371 HQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHG 430
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQ 117
A+ ++ +I G +PD+ TF V+ AC S IE+GK++ A G M
Sbjct: 431 LGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHY 490
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
++DL + G ++ + KM + V W ++S G++
Sbjct: 491 GCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNV 535
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II L++ L + KL+ C+ G D+A LVF+QI P+ F +N +IR S
Sbjct: 10 QIILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLIRGYCNSNSP 69
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++++ LY +I +G P++FTFPFV+KAC + A VHG A K GF+ + VQ+ L
Sbjct: 70 IKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFASLICVQNGL 129
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ Y+ CG + RKMFD M RS+VSW +MI G + G
Sbjct: 130 INAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLG 168
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN MI + G + LL+ M G D FT ++ C I G+ VH
Sbjct: 156 SWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYI 215
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G D+ ++ L+D+Y KCG + ++F +M ++VVSWT+MI+ A G ++ A
Sbjct: 216 QITGMKIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYA 274
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR--PDKFTFPF 84
G ++A F Q+ +V +WN MI + G +AL L++ M + FR P++ T
Sbjct: 269 GLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEM--HSFRVVPNEATLLS 326
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V+ AC + GK++H + + ++L+D+Y KCG + +F++M ++
Sbjct: 327 VLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKN 386
Query: 145 VVSWTTMISGLAASG 159
+VSW +I LA G
Sbjct: 387 LVSWNVIIGALALHG 401
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G A+ VF+++ ++ +WN++I AL + G ++A+ L+ M G
Sbjct: 358 LCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAG 417
Query: 75 FRPDKFTFPFVIKACIASLAIEKG 98
PD+ TF ++ AC S ++ G
Sbjct: 418 VWPDEITFMGLLSACSHSGLVDSG 441
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 85/145 (58%)
Query: 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
+ L++L S + K D A VF P WN MIRA T +AL +Y M+ G
Sbjct: 66 ITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL 125
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PDK+TF FV+KAC +L +++G HG + G RD+F+ + L+D+Y K GD+ R+
Sbjct: 126 EPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRARE 185
Query: 136 MFDKMRVRSVVSWTTMISGLAASGD 160
+FDKM R VV+W MI+GL+ S D
Sbjct: 186 VFDKMPKRDVVAWNAMIAGLSQSED 210
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQ 62
I++ G +D + L+D+ + G A +F++ TWN++I A +G + +
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKE 616
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ ++ M F P+ TF V+ A A +G H ++ GF + V ++L+D
Sbjct: 617 AISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLID 676
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D K+F++M + VSW M+SG A G D A
Sbjct: 677 MYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 718
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R GL D + L+D+ S G A VF ++ V WN MI L+ +
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213
Query: 63 ALLLYNLMICNGFRPDKFT----FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
A+ + M G P + FP + K IE + +HG + FS V +
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLS----NIELCRSIHGYVFRRDFSSA--VSN 267
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+DLY KCGDVD R++FD+M + VSW TM++G A +G
Sbjct: 268 GLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNG 308
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+DL S G D A VF Q+ +W M+ +G ++ L L++ M R +
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K + A ++ +EKGKE+HG A++ D+ V + LM +Y KCG+ + +++F
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ R +V+W+ +I+ L +G + A
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEA 414
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 77/152 (50%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ +D L+ L+ + + G+T+ A +F ++ + W+ +I AL G +AL L+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M +P++ T ++ AC ++ GK +H VKA D+ + L+ +Y KCG
Sbjct: 420 EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCG 479
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
F++M R +V+W ++I+G A GD
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
C F+ AL F+++ + TWN +I G A+ ++ + + PD T
Sbjct: 478 CGFFTA---ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR- 141
V+ AC +++G +HGL VK GF D V++ L+D+Y KCG + +F+K
Sbjct: 535 VGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDF 594
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+ V+W +I+ +G A
Sbjct: 595 TKDEVTWNVIIAAYMQNGHAKEA 617
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G ++ L+ L+D+ + G+ D++ +F+++ +WN M+ + G +A
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 718
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L++LM + + D +F V+ AC + +E+G+++ H ++ K D+ + ++D
Sbjct: 719 IALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVD 778
Query: 123 LYLKCGDVD 131
L + G D
Sbjct: 779 LLGRAGLFD 787
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 2/139 (1%)
Query: 18 KLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
KL+D C S +G ++A LV QI P V+ WN MIR + ++LLY MI NG+
Sbjct: 41 KLIDFCVDSEFGDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGY 100
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PD FTFPFV+KAC + GK +H VK+GF D + + L+ +Y+ C D+ G K
Sbjct: 101 SPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLK 160
Query: 136 MFDKMRVRSVVSWTTMISG 154
+FD + +VV+WT +I+G
Sbjct: 161 VFDNIPKWNVVAWTCLIAG 179
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 86/155 (55%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+++ +L +L++ + G+ A +F+++ ++ +WN MI A +AL L+
Sbjct: 244 NSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFD 303
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M +G PDK TF V+ C A+ G+ VH +K G + D+ + + L+D+Y K G+
Sbjct: 304 MWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGE 363
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +K+F ++ + VV WT+MI+GLA G + A
Sbjct: 364 LGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEA 398
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 7/158 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D LL + L VF I +V W +I + +A
Sbjct: 130 IVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEA 189
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-------SRDMFV 116
L ++ M P++ T + AC S I+ G+ VH KAG+ + ++ +
Sbjct: 190 LKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIIL 249
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ ++++Y KCG + R +F+KM R++VSW +MI+
Sbjct: 250 ATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINA 287
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G++ D L LLD+ + G+ +A +FS ++ V W MI L + G +A
Sbjct: 339 LLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEA 398
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMF 115
L ++ M + PD T+ V+ AC +E+ K E++G+ R+ +
Sbjct: 399 LSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVP----GREHY 454
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
++DL + G ++ + M V+ ++ W +++G
Sbjct: 455 --GCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLNG 492
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 18 KLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
KLL+ C D +A+ VF+ I+ P+ WN M+R + + AL LY +MI G
Sbjct: 2 KLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLG 61
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
P+ +TFPF++K+C S A E+G+++HG +K G+ D++V ++L+ +Y + G ++
Sbjct: 62 LLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAH 121
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD+ R VVS+T +I+G A+SG++ +A
Sbjct: 122 KVFDRSSHRDVVSYTALITGYASSGNIRSA 151
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F +I V +WN MI GS +AL L+ M+ RPD+ T V+
Sbjct: 146 GNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVL 205
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S ++E G++VH GF ++ + + L+DLY KCG V+ +F+ + + VV
Sbjct: 206 SACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVV 265
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 266 SWNTLIGG 273
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F + C V +WN +I T +ALLL
Sbjct: 227 HGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLL 286
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AI+ G+ +H K + ++++L+D+Y
Sbjct: 287 FQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMY 346
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ M +S+ SW MI G A G +A
Sbjct: 347 AKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAG 386
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 2/158 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
++N L L+D+ + G + A VF+ + + +WN MI + G + L++
Sbjct: 332 VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFS 391
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKC 127
M NG PD TF ++ AC S ++ G+ + + + + ++DL
Sbjct: 392 RMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHS 451
Query: 128 GDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
G ++M M + V W +++ G+L+ A
Sbjct: 452 GLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELA 489
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 85/145 (58%)
Query: 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
+ L++L S + K D A VF P WN MIRA T +AL +Y M+ G
Sbjct: 66 ITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL 125
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PDK+TF FV+KAC +L +++G HG + G RD+F+ + L+D+Y K GD+ R+
Sbjct: 126 EPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRARE 185
Query: 136 MFDKMRVRSVVSWTTMISGLAASGD 160
+FDKM R VV+W MI+GL+ S D
Sbjct: 186 VFDKMPKRDVVAWNAMIAGLSQSED 210
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQ 62
I++ G +D + L+D+ + G A +F++ TWN++I A +G + +
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKE 616
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ ++ M F P+ TF V+ A A +G H ++ GF + V ++L+D
Sbjct: 617 AISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLID 676
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + K+F++M + VSW M+SG A G D A
Sbjct: 677 MYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 718
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R GL D + L+D+ S G A VF ++ V WN MI L+ +
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213
Query: 63 ALLLYNLMICNGFRPDKFT----FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
A+ + M G P + FP + K IE + +HG + FS V +
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLS----NIELCRSIHGYVFRRDFSSA--VSN 267
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+DLY KCGDVD R++FD+M + VSW TM++G A +G
Sbjct: 268 GLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNG 308
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+DL S G D A VF Q+ +W M+ +G ++ L L++ M R +
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K + A ++ +EKGKE+HG A++ D+ V + LM +Y KCG+ + +++F
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ R +V+W+ +I+ L +G + A
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEA 414
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 77/152 (50%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ +D L+ L+ + + G+T+ A +F ++ + W+ +I AL G +AL L+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M +P++ T ++ AC ++ GK +H VKA D+ + L+ +Y KCG
Sbjct: 420 EMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCG 479
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
F++M R +V+W ++I+G A GD
Sbjct: 480 FFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
C F+ AL F+++ + TWN +I G A+ ++ + + PD T
Sbjct: 478 CGFFTA---ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR- 141
V+ AC +++G +HGL VK GF D V++ L+D+Y KCG + +F+K
Sbjct: 535 VGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDF 594
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+ V+W +I+ +G A
Sbjct: 595 TKDEVTWNVIIAAYMQNGHAKEA 617
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G ++ L+ L+D+ + G+ ++ +F+++ +WN M+ + G +A
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 718
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L++LM + + D +F V+ AC +E+G+++ H ++ K D+ + ++D
Sbjct: 719 IALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVD 778
Query: 123 LYLKCGDVD 131
L + G D
Sbjct: 779 LLGRAGLFD 787
>gi|356515240|ref|XP_003526309.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 560
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 81/138 (58%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G +A +F QI + F WN MIR + S +AL+LY M+ G +PD FT+PFV+
Sbjct: 14 GHMPYAQHIFHQIVLKNSFLWNSMIRGYACNNSPSKALILYREMLHFGHKPDNFTYPFVL 73
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC L E G++VH L V G D++V ++++ +Y GDV R MFDKM VR +
Sbjct: 74 KACGDLLLREIGRKVHALVVVGGLEEDVYVGNSILSMYFTFGDVAAARVMFDKMPVRDLT 133
Query: 147 SWTTMISGLAASGDLDAA 164
SW TM+SG +G+ A
Sbjct: 134 SWNTMMSGFVKNGEARGA 151
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + +L + +G A ++F ++ + +WN M+ +G + A ++
Sbjct: 96 GLEEDVYVGNSILSMYFTFGDVAAARVMFDKMPVRDLTSWNTMMSGFVKNGEARGAFEVF 155
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM---FVQSTLMDLY 124
M +GF D T ++ AC + ++ G+E+HG V+ G +R + F+ ++++ +Y
Sbjct: 156 GDMRRDGFVGDGITLLALLSACGDVMDLKAGREIHGYVVRNGGNRRLCNGFLMNSIICMY 215
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
C + RK+F+ +RV+ VVSW ++ISG GD
Sbjct: 216 CNCESMSFARKLFEGLRVKDVVSWNSLISGYEKCGD 251
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 27/125 (21%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F +R V +WN +I G + L L+ M+ G PD+ T V+ AC A
Sbjct: 227 LFEGLRVKDVVSWNSLISGYEKCGDAFLVLELFGRMVVVGAVPDEVTVTSVLGACNQISA 286
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ G V VK ++FD+M + + + T M++G
Sbjct: 287 LRLGASVQSYVVK---------------------------RVFDEMPEKILAACTVMVTG 319
Query: 155 LAASG 159
G
Sbjct: 320 FGIHG 324
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 88/156 (56%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L + L KL + G +A +F QI + F WN MIR + S +AL LY
Sbjct: 54 LRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYL 113
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ G +PD FT+PFV+KAC L E G++VH L V G D++V ++++ +Y K G
Sbjct: 114 KMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFG 173
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DV+ R +FD+M VR + SW TM+SG +G+ A
Sbjct: 174 DVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGA 209
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + +L + +G + A +VF ++ + +WN M+ +G + A ++
Sbjct: 154 GLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVF 213
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR---DMFVQSTLMDLY 124
M +GF D+ T ++ AC + ++ GKE+HG V+ G S + F+ ++++D+Y
Sbjct: 214 GDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMY 273
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
C V RK+F+ +RV+ VVSW ++ISG GD
Sbjct: 274 CNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGD 309
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSN---DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G S + L+ ++D+ A +F +R V +WN +I G +
Sbjct: 251 VVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDA 310
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
QAL L+ M+ G PD+ T V+ AC A+ G V VK G+ ++ V + L
Sbjct: 311 FQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTAL 370
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +Y CG + ++FD+M +++ + T M++G G
Sbjct: 371 IGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHG 409
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF ++ ++ +M+ I G +A+ ++ M+ G PD+ F V+ AC
Sbjct: 383 ACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSH 442
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQ------STLMDLYLKCGDVDGGRKMFDKMRVRSV 145
S +++GKE+ +RD V+ S L+DL + G +D + + M+++
Sbjct: 443 SGLVDEGKEIF-----YKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPN 497
Query: 146 VS-WTTMISG 154
WT ++S
Sbjct: 498 EDVWTALLSA 507
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 102/168 (60%), Gaps = 4/168 (2%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRA-LTI 56
+ + I GL D +L++ S ++L +F+ +R P+ FTWN ++RA L +
Sbjct: 23 LSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHLYL 82
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
S QALL Y L + + +PD +T+P +++ C A ++ +G+++H AV +GF D++V
Sbjct: 83 QNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYV 142
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++TLM+LY CG V R++F++ V +VSW T+++G +G+++ A
Sbjct: 143 RNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEA 190
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 9/156 (5%)
Query: 18 KLLDLCSFY---------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+LLDL S+ G A ++F + V +W+ MI +AL L+
Sbjct: 333 ELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQ 392
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M +G RPD+ I AC ++ GK +H + ++ + +TL+D+Y+KCG
Sbjct: 393 EMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCG 452
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V+ ++F M + V +W +I GLA +G ++ +
Sbjct: 453 CVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQS 488
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 27 GKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G + A +F+ +R + +W+ M+ + +AL+L+ M +G D+
Sbjct: 216 GCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVS 275
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK-MRVR 143
+ AC L +E G+ VHGLAVK G + +++ L+ LY CG++ R++FD +
Sbjct: 276 ALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELL 335
Query: 144 SVVSWTTMISGLAASGDLDAA 164
++SW +MISG G + A
Sbjct: 336 DLISWNSMISGYLRCGSIQDA 356
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R L + +L L+D+ G ++AL VF + V TWN +I L ++GS Q+
Sbjct: 429 ISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQS 488
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-----VHGLAVKAGFSRDMFVQS 118
L ++ M G P++ TF V+ AC + G+ +H ++A
Sbjct: 489 LNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKH----YG 544
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMI 152
++DL + G + ++ D M + V +W ++
Sbjct: 545 CMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALL 579
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KLL+ C D +A+ VF I+ P + WN M R +
Sbjct: 24 QMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSD 83
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY M+ G P+ +TFPF++K+C S A ++G+++HG +K GF D+++ ++
Sbjct: 84 PVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTS 143
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ +K+ DK R VVS+T +I+G A+ G +++A
Sbjct: 144 LISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESA 188
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G + +V L+DL S G+ + A +F + V +WN +I T +ALLL
Sbjct: 264 HGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLL 323
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G +P+ T ++ AC AI+ G+ +H K G + ++++L+D+Y
Sbjct: 324 FQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 383
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ +++FD M RS+ SW MI G A G +AA
Sbjct: 384 AKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAA 423
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F +I V +WN I G+ +AL L+ M+ RPD+ T V+
Sbjct: 183 GXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVL 242
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + + L+DLY KCG+++ +F + + V+
Sbjct: 243 SACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVI 302
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 303 SWNTLIGG 310
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF + + +WN MI + G + A ++
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIF 427
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL------M 121
+ M NG PD TF ++ AC S ++ G+ + +RD + L +
Sbjct: 428 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIF-----RSMTRDYKLMPKLEHYGCMI 482
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
DL G KM + M + V W +++ G+++
Sbjct: 483 DLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVE 524
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q ++R G D + +L+D S + DHA VF + P VF N++I+
Sbjct: 42 QVVVR-GHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFG 100
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +++ M G P+ +T+PFV+KAC A A +KG+ +H AVK G D+FV + L+
Sbjct: 101 EALKVHDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHEHAVKCGMDLDLFVGNALV 160
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC DV+ RK+FD++ R +VSW +M+SG +G +D A
Sbjct: 161 AFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDA 203
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 22 LCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF--R 76
L +FY K + VF +I + +WN M+ T++G A+LL+ M+ +
Sbjct: 159 LVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGG 218
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD TF V+ A + I G +H VK D V + L+ LY CG V R +
Sbjct: 219 PDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAI 278
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
FD++ RSV+ W+ +I G
Sbjct: 279 FDRISDRSVIVWSAIIRCYGTHG 301
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ + D + L+ L S G A +F +I V W+ +IR G + +A
Sbjct: 247 IVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEA 306
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ ++ G RPD F ++ AC + +E+G + G ++ + ++DL
Sbjct: 307 LALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDL 366
Query: 124 YLKCGDVDGGRKMFDKMRVRS 144
+ GD++ + M ++
Sbjct: 367 LGRAGDLEKAVEFIQSMPIQP 387
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 7/145 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTI-------DGSSLQALLLYNLMICNGFRPDK 79
G +A +F I+ P++ +N+MIRA D QAL+LY M+CN PD
Sbjct: 49 GSLAYAADIFHYIKKPNLPFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDISPDC 108
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
TFPF++K C ++AI G+ +HG A+K G D+FVQ++L+ Y C V RK+FD+
Sbjct: 109 LTFPFLLKECTRNVAIYGGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKLFDE 168
Query: 140 MRVRSVVSWTTMISGLAASGDLDAA 164
M R VVSW +MI G SGDLD +
Sbjct: 169 MSNRDVVSWNSMIIGYLRSGDLDQS 193
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 27 GKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMIC--------NGFRP 77
G D +L +F +++ +V TWN +I G +AL ++ M C N RP
Sbjct: 188 GDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINNKVRP 247
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
DK T V+ AC AI+ GK VH ++G DM + + L+D+Y KCG + ++F
Sbjct: 248 DKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGCLQRAYEVF 307
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
+M + ++WT MIS A +G
Sbjct: 308 REMSEKDTLAWTAMISVFALNG 329
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL D ++ L+D+ G A VF ++ W MI ++G +A
Sbjct: 277 RSGLECDMVIGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFD 336
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
++N M G +P+ TF ++ AC S +E G+
Sbjct: 337 MFNEMEAGGVKPNLVTFVGLLSACAHSGLVETGR 370
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLD---LCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
K+I+ GL N + KL++ L + +A+ VF I+ P++ WN M R +
Sbjct: 24 KMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSD 83
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPF++KAC S A +G+++HG +K G D++V ++
Sbjct: 84 PVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTS 143
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y+K G + RK+FD+ R VVS+T +I G A++G + +A
Sbjct: 144 LIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSA 188
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F +I V +WN +I G+ +AL L+ M+ +PD+ T V+ AC S +
Sbjct: 191 MFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSAS 250
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
IE G++VH GF ++ + + L+DLY+KCG+V+ +F+ + + V+SW T+I G
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGG 310
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL G+ + A +F + V +WN +I T +ALLL
Sbjct: 264 HGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLL 323
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P++ T ++ AC AI+ G+ +H K G S ++++L+D+Y
Sbjct: 324 FQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMY 383
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ +++FD M RS+ SW MI G A G + A
Sbjct: 384 AKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPA 423
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+SN L L+D+ + G + A VF + + +WN MI + G + A ++
Sbjct: 368 GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIF 427
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M +G PD TF ++ AC S ++ G+ +
Sbjct: 428 SRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHI 461
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++R GL D K++ CS G +A LVFSQI P +T N +IR T
Sbjct: 10 QMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLH 69
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ALL Y M+ G PD++TFP + K+C S +GK++H + K GF+ D + Q+TL
Sbjct: 70 QEALLFYQEMMVQGLIPDRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFASDTYAQNTL 126
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
M++Y CG + RK+FDKM ++VVSW TMI G+ A D
Sbjct: 127 MNMYSNCGCLVSARKVFDKMEDKTVVSWATMI-GVHAQWD 165
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I +G +L L+D+ G A +F + + ++F+WN+MI D +
Sbjct: 211 EYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYE 270
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ALLL+ M G + DK T ++ AC A+E GK +H K D+ + + L+
Sbjct: 271 EALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALV 330
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG ++ ++F +M + V++WT +I GLA G + A
Sbjct: 331 DMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENA 373
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G ++D L+++ S G A VF ++ V +W MI +A+
Sbjct: 113 KLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVR 172
Query: 66 LYN-LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ +M +P++ T V+ AC + + K +H + GF R + + + LMD+Y
Sbjct: 173 LFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVY 232
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG V R +FDK + +++ SW MI+G + + A
Sbjct: 233 CKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEA 272
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G + A+ VF ++ V TW +I L + G + AL ++ M
Sbjct: 322 DVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMH 381
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG 98
G +PD TF V+ AC + +++G
Sbjct: 382 IKGVKPDAITFVGVLAACSHAGFVDEG 408
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRAL-TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
+AL + +Q+R P++ +N +IR L T + S++ L++Y M+ G PD +T PFV+KAC
Sbjct: 91 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 150
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
S A+ +G+EVHG A+K G + D++V +TLM +Y C + RK+FD R +VSWT
Sbjct: 151 AESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWT 210
Query: 150 TMISGLAASG 159
TMI G G
Sbjct: 211 TMIQGYVKMG 220
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSN-DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
IIR N D + L+D+ G + A VF ++ +V +WN MI L G +
Sbjct: 230 IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKE 289
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L ++ M G +PD T V+ +C +E GK VH + D F+ + L+D
Sbjct: 290 SLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVD 349
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG +D +F M + V S+T MI GLA G
Sbjct: 350 MYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHG 386
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R + D + L+D+ + G D A VF + V+++ MI L + G +AL
Sbjct: 334 RNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALD 393
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
L++ M G PD+ TF V+ AC +E+G++
Sbjct: 394 LFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRK 428
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 10/166 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGK------TDHALLVFSQ---IRCPHVFTWNLMIRA 53
+I + GL++ L + L+ C+ G AL +F + I H + ++ +IR
Sbjct: 55 QITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTH-YMFSSLIRG 113
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
+ G +A++++ ++C G PD FTFPFV+ AC S A+ +G +VHG VK GF RD
Sbjct: 114 FSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERD 173
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
MFV+++L+ Y +CG++D R++FDKM R+VVSWT++I G A G
Sbjct: 174 MFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +FS + + +WN MI AL + +A+ L+ +M G DK T V
Sbjct: 421 GDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVA 480
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ K +HG K DM + + L+D++ +CGD ++F+KM R V
Sbjct: 481 SACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVS 540
Query: 147 SWTTMISGLAASGD 160
+WT I +A G+
Sbjct: 541 AWTAAIGAMAMEGN 554
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 81/156 (51%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L + L+V L+D+ G D A +F + ++ +N ++ G + + L +
Sbjct: 271 LEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLG 330
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ +G RPD+ T + AC + GK HG ++ G V + ++++Y+KCG
Sbjct: 331 EMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCG 390
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++FD+M ++ VSW ++I+G +GD+++A
Sbjct: 391 KQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESA 426
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D + L+ G+ D VF ++ +V +W +I G +A
Sbjct: 165 IVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEA 224
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G RP+ T VI AC ++ G++V + + + + L+D+
Sbjct: 225 VSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDM 284
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KCG +D RK+FD+ +++V + T++S G
Sbjct: 285 YMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQG 320
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G A+ VF+++ V W I A+ ++G+ A+ L++ M+
Sbjct: 507 DMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEML 566
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQSTLMDLY 124
G +PD F ++ A +E+G K+++G+A +A ++DL
Sbjct: 567 QQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQA------VHYGCMVDLL 620
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ G + + + M++ + V W ++++ ++D A
Sbjct: 621 GRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIA 661
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I GL + + KLL+ C S G +A L+F Q+ CP WN +IR S +
Sbjct: 27 VIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPI 86
Query: 62 QALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A++ YN M+C+ F PD FTF FV+KAC A K KEVHG ++ G+ D+ V + L
Sbjct: 87 DAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNL 146
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y G V R++FDKM R +V+W MIS + G
Sbjct: 147 VKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQG 185
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G D ++ L+ S G A VF ++ + WN MI + G +A
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEA 190
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L YN M D FT +I +C A+ G ++H A + G + ++V + L+D+
Sbjct: 191 LQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDM 250
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D +FD+M+ + + +W +MI G G
Sbjct: 251 YAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHG 286
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + L+D+ + G D A+L+F +++ +FTWN MI + G +A+ +
Sbjct: 236 GLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCF 295
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M+ +P+ TF ++ C +++G K + ++ K ++ L+DLY +
Sbjct: 296 QQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGR 355
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMI 152
G +D ++ V W ++
Sbjct: 356 AGKLDKALEIVSNSSHNDSVLWRILL 381
>gi|255549932|ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544922|gb|EEF46437.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D++L KL++L A L+F +I ++F WN++IR G ++ LY
Sbjct: 117 GLQFDRVLAPKLVNLYCICNSLCEARLLFDKIPKRNLFLWNVLIRGYAWYGPYEASIQLY 176
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ G PD FTFPFV+KAC A AIE G+ +H +++G+ RD+FV + L+D+Y KC
Sbjct: 177 YKIFDYGLVPDNFTFPFVLKACSALSAIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKC 236
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G VD R++F K VR V W +M++ + +G D +
Sbjct: 237 GCVDNAREVFHKFPVRDAVLWNSMLAAYSQNGKPDKS 273
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 88/158 (55%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++++R G D + L+D+ S G D+A VF + WN M+ A + +G
Sbjct: 212 EQVMRSGWERDVFVGAALIDMYSKCGCVDNAREVFHKFPVRDAVLWNSMLAAYSQNGKPD 271
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
++L L + M+ G RP + T VI A A+ +G+E+HG A + F + V++TL+
Sbjct: 272 KSLALCSEMVLAGVRPTEATLVTVISASADIAALPQGRELHGFAWRRRFESNDKVKTTLI 331
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y KCG + + +F+++R ++VVSW +I+G A G
Sbjct: 332 DMYAKCGTMKVAQNLFEQLRDKNVVSWNAIITGYAMHG 369
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+++CI A+ GK++H G D + L++LY C + R +FDK+ R++
Sbjct: 94 LQSCITQKALIPGKQLHASLCHVGLQFDRVLAPKLVNLYCICNSLCEARLLFDKIPKRNL 153
Query: 146 VSWTTMISGLAASGDLDAA 164
W +I G A G +A+
Sbjct: 154 FLWNVLIRGYAWYGPYEAS 172
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
SND++ L+D+ + G A +F Q+R +V +WN +I + G S + L+L++
Sbjct: 322 SNDKVKT-TLIDMYAKCGTMKVAQNLFEQLRDKNVVSWNAIITGYAMHGYSNEVLILFDR 380
Query: 70 MICNGFRPDKFTFPFVIKAC 89
M +PD TF V+ AC
Sbjct: 381 MREEA-KPDHITFVGVLLAC 399
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++R L D K++ C+ + G +A LVF+QI P FT N +IR T
Sbjct: 62 QMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLP 121
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
QA+L Y LM+ G PD+FTFP + K+C + +GK++H + K GF+ D ++Q+TL
Sbjct: 122 RQAILFYQLMMLQGLDPDRFTFPSLFKSCGV---LCEGKQLHCHSTKLGFASDAYIQNTL 178
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
M++Y CG + RK+FDKM +SVVSW TMI A
Sbjct: 179 MNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 81/157 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G+ +L L+D+ G A +F+++ ++F WN+MI D +A
Sbjct: 264 IDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEA 323
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N M +G + DK T ++ AC A+E GK +H K D+ + + L+D+
Sbjct: 324 LSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDM 383
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ ++F +M + V++WT +I GLA G
Sbjct: 384 YAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 420
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G ++D + L+++ S G A VF ++ V +W MI A +A+
Sbjct: 165 KLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIK 224
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M +P++ T V+ AC S +E K+VH + G + S LMD+Y
Sbjct: 225 LFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYC 284
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG R +F+KM +++ W MI+G D + A
Sbjct: 285 KCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEA 323
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + + D L L+D+ + G + A+ VF ++ V TW +I L + G L+A
Sbjct: 365 IEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKA 424
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M + +PD TF V+ AC + + +G + + K G + ++D
Sbjct: 425 LELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVD 484
Query: 123 LYLKCGDVDGGRKMFDKM 140
+ + G + + M
Sbjct: 485 MLGRAGRIAEAEDLIQNM 502
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRAL-TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
+AL + +Q+R P++ +N +IR L T + S++ L++Y M+ G PD +T PFV+KAC
Sbjct: 76 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 135
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
S A+ +G+EVHG A+K G + D++V +TLM +Y C + RK+FD R +VSWT
Sbjct: 136 AESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWT 195
Query: 150 TMISGLAASG 159
TMI G G
Sbjct: 196 TMIQGYVKMG 205
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 5/163 (3%)
Query: 2 QKIIRYGLSN-----DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI 56
+K+ RY + N D + L+D+ G + A VF ++ +V +WN MI L
Sbjct: 246 RKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQ 305
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
G ++L ++ M G +PD T V+ +C +E GK VH + D F+
Sbjct: 306 KGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFI 365
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ L+D+Y KCG +D +F M + V S+T MI GLA G
Sbjct: 366 GNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHG 408
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ GL++D + L+ + + A VF + +W MI+ G + +
Sbjct: 150 QAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFARE 209
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLM 121
+ L+ M + D T V+ +C + G+++H ++ + + D+FV + L+
Sbjct: 210 GVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALV 269
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+YLKCGD + RK+F +M V++VVSW +MISGLA G +
Sbjct: 270 DMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKES 312
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R + D + L+D+ + G D A VF + V+++ MI L + G +AL
Sbjct: 356 RNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALD 415
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
L++ M G PD+ TF V+ AC +E+G++
Sbjct: 416 LFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRK 450
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC---SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KL++ C + +A+ VF I+ P++ WN M R +
Sbjct: 55 QMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSD 114
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPFV+K+C S A ++G+++HG +K G D++V ++
Sbjct: 115 PVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 174
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ K+FDK R VVS+T +I G A+ G ++ A
Sbjct: 175 LISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENA 219
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A +F +I V +WN MI G+ +AL L+ M+ RPD+ T V+
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + + L+DLY KCG+++ +F+++ + V+
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 334 SWNTLIGG 341
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F ++ V +WN +I T +ALLL
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AI+ G+ +H K G + ++++L+D+Y
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ + +S+ SW MI G A G DA+
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAS 454
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF+ I + +WN MI + G + + L+
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M G +PD TF ++ AC S ++ G+ +
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KLL+ C D +A+ VF I+ P++ WN M R +
Sbjct: 10 QMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHALSSD 69
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY +MI G PD +TFPF++K+C S ++G+++HG +K GF D++V ++
Sbjct: 70 PVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTS 129
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y + G ++ RK+FD R VVS+T +I+G + G +++A
Sbjct: 130 LISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESA 174
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G +++ +V L+DL S +G+ + A +F + V +WN +I T +ALLL
Sbjct: 251 HGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLL 310
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH---GLAVKAGFSRDMFVQSTLMDL 123
+ M+ +G P+ T ++ AC AI+ G+ +H +K + +Q++L+D+
Sbjct: 311 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDM 370
Query: 124 YLKCGDVDGGRKMFD-KMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+D +++FD M RS+ +W MISG A G +AA
Sbjct: 371 YAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAA 412
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G + A +F +I V +WN MI G+ +AL L+ +M+ RPD+ T V
Sbjct: 169 GYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTV 228
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC S +IE G+ VH GF+ ++ + + L+DLY K G+V+ ++FD + + V
Sbjct: 229 VSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDV 288
Query: 146 VSWTTMISG 154
+SW T+I G
Sbjct: 289 ISWNTLIGG 297
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVF-SQIRCPHVFTWNLMIRALTIDGS 59
+ K ++ ++N L L+D+ + G D A VF S + + TWN MI + G
Sbjct: 349 INKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGR 408
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQS 118
+ A +++ M NG PD TF ++ AC S ++ G+ + + + +
Sbjct: 409 ANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYG 468
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++DL G +M + M + V W +++ G+L+
Sbjct: 469 CMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLE 513
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 91/160 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +ND + +LD+ G +AL +F +I P W MI +G AL
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHAL 1185
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y+LM +G +PD++TF +IKA A+E+GK++H VK +S D FV ++L+D+Y
Sbjct: 1186 SVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMY 1245
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG V ++F KM VR VV W M+ GLA G +D A
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEA 1285
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+ ND + L+DL S GK D A + + +WN ++ S +AL
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++LM G D+ T IKA + +++GK++ A+K GF+ D++V S ++D+Y
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMY 1144
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+KCGD+ ++F ++ V+WTTMISG +GD D A
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHA 1184
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 5/167 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS-- 60
+I+ G D+ L L+ + S G A VF + + TWN ++ A S
Sbjct: 636 RIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSY 695
Query: 61 ---LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
L+ L+ L+ GF + T ++K C+ S ++ + VHG AVK GF D+FV
Sbjct: 696 ENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVS 755
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y K G V R +FDKM R V W M+ + D A
Sbjct: 756 GALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 39 IRCPHV--FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96
I P + +WN MI + + ++A+ + ++ +G +PD+FT V++AC E
Sbjct: 953 INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGE 1012
Query: 97 K---GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
G +VH A+K G D FV + L+DLY K G +D + + SW ++
Sbjct: 1013 YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMF 1072
Query: 154 GLAAS 158
G S
Sbjct: 1073 GYIKS 1077
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 63/126 (50%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A+ +F + ++F WN + G + A+ + ++ + D T ++ A +
Sbjct: 846 YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ ++ G+++H L +K+ F+ + V ++LM++Y K G V K F ++SW T
Sbjct: 906 GADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNT 965
Query: 151 MISGLA 156
MIS A
Sbjct: 966 MISSYA 971
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ S D + L+D+ G A VF ++ V WN M+ L G +
Sbjct: 1225 NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDE 1284
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL L+ M NG +PDK TF V+ AC S L E K + G + ++ S L+
Sbjct: 1285 ALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLV 1344
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
D + G + + M ++ S + ++ GD + A
Sbjct: 1345 DALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
++ IA ++ GK H V +G D ++ + L+ +Y KCG + R++FDK R +V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678
Query: 147 SWTTMISGLAASGD 160
+W ++++ A D
Sbjct: 679 TWNSILAAYAQFAD 692
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 91/160 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +ND + +LD+ G +AL +F +I P W MI +G AL
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHAL 1185
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y+LM +G +PD++TF +IKA A+E+GK++H VK +S D FV ++L+D+Y
Sbjct: 1186 SVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMY 1245
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG V ++F KM VR VV W M+ GLA G +D A
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEA 1285
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+ ND + L+DL S GK D A + + +WN ++ S +AL
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++LM G D+ T IKA + +++GK++ A+K GF+ D++V S ++D+Y
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMY 1144
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+KCGD+ ++F ++ V+WTTMISG +GD D A
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHA 1184
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 5/167 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS-- 60
+I+ G D+ L L+ + S G A VF + + TWN ++ A S
Sbjct: 636 RIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSY 695
Query: 61 ---LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
L+ L+ L+ GF + T ++K C+ S ++ + VHG AVK GF D+FV
Sbjct: 696 ENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVS 755
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y K G V R +FDKM R V W M+ + D A
Sbjct: 756 GALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 39 IRCPHV--FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96
I P + +WN MI + + ++A+ + ++ +G +PD+FT V++AC E
Sbjct: 953 INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGE 1012
Query: 97 K---GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
G +VH A+K G D FV + L+DLY K G +D + + SW ++
Sbjct: 1013 YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMF 1072
Query: 154 GLAAS 158
G S
Sbjct: 1073 GYIKS 1077
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 63/126 (50%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A+ +F + ++F WN + G + A+ + ++ + D T ++ A +
Sbjct: 846 YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ ++ G+++H L +K+ F+ + V ++LM++Y K G V K F ++SW T
Sbjct: 906 GADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNT 965
Query: 151 MISGLA 156
MIS A
Sbjct: 966 MISSYA 971
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ S D + L+D+ G A VF ++ V WN M+ L G +
Sbjct: 1225 NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDE 1284
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL L+ M NG +PDK TF V+ AC S L E K + G + ++ S L+
Sbjct: 1285 ALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLV 1344
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
D + G + + M ++ S + ++ GD + A
Sbjct: 1345 DALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
++ IA ++ GK H V +G D ++ + L+ +Y KCG + R++FDK R +V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678
Query: 147 SWTTMISGLAASGD 160
+W ++++ A D
Sbjct: 679 TWNSILAAYAQFAD 692
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMIC 72
L K+L L S + ++A VF I F WN +IRA D S +A +LY M+
Sbjct: 65 FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 124
Query: 73 NGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PDK TFPFV+KAC + +GK+VH VK GFS D++V + L+ Y CG +D
Sbjct: 125 RGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLD 184
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FD+M RS+VSW +MI L G+ D+A
Sbjct: 185 LARKVFDEMPERSLVSWNSMIDALVRVGEYDSA 217
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+++G S D + L+ G D A VF ++ + +WN MI AL G
Sbjct: 157 QIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDS 216
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T V+ AC ++ G H ++ + D+ ++++
Sbjct: 217 ALQLFRDMQ-KSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNS 275
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y KCG + ++F MR + SW MI G A G + A
Sbjct: 276 LIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEA 320
>gi|297733701|emb|CBI14948.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 85/133 (63%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A+ +F QI P +N+MIR T+ S +A+LL+ M N +PD+FTFP ++K C
Sbjct: 75 DYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVC 134
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
A+ +G+++H L +K GF FV++TL+ +Y CG+V+ R++FD+M R+V +W
Sbjct: 135 SRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWN 194
Query: 150 TMISGLAASGDLD 162
+M +G SG+ +
Sbjct: 195 SMFAGYTKSGNWE 207
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++R L D K++ C+ + G +A LVF+QI P FT N +IR T
Sbjct: 1 MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
QA+L Y LM+ G PD+FTFP + K+C + +GK++H + K GF+ D ++Q+TLM
Sbjct: 61 QAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLM 117
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++Y CG + RK+FDKM +SVVSW TMI A
Sbjct: 118 NMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 152
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 65/117 (55%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
++F WN+MI D +AL L+N M +G + DK T ++ AC A+E GK +H
Sbjct: 172 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLH 231
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K D+ + + L+D+Y KCG ++ ++F +M + V++WT +I GLA G
Sbjct: 232 VYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCG 288
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G + A+ VF ++ V TW +I L + G L+AL L++ M
Sbjct: 242 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 301
Query: 72 CNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ +PD TF V+ AC A L E + + K G + ++D+ + G +
Sbjct: 302 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 361
Query: 131 DGGRKMFDKM 140
+ M
Sbjct: 362 AEAEDLIQNM 371
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 86/153 (56%), Gaps = 3/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID-GSSLQALLLYNLMIC 72
L K+L SF D+A +FS+ P+ F WN +IRA Q+ LLY MI
Sbjct: 65 FLYSKILHFSSF-NDLDYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKRMIE 123
Query: 73 NG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PDK T+PFV+KAC A+ +GK+VH +K GF D+++ ++L+ Y CG +
Sbjct: 124 QGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCGCSE 183
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +FDKM RS+VSW MI L G+ DAA
Sbjct: 184 PAQYVFDKMPARSLVSWNAMIDALVQFGEFDAA 216
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++++G +D + L+ + G ++ A VF ++ + +WN MI AL G
Sbjct: 156 QMLKHGFESDVYINNSLIHFYASCGCSEPAQYVFDKMPARSLVSWNAMIDALVQFGEFDA 215
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ + + F PD +T V+ AC A+ G VH ++ + D+ V +
Sbjct: 216 ALKLF-VQLQELFEPDGYTMQSVLNACAGLCALSLGMWVHAYMLRKFDVEVTLDVLVDNC 274
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG +D ++F++M R + SW +MI G A G
Sbjct: 275 LLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILGFAMHG 314
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 86/141 (60%), Gaps = 1/141 (0%)
Query: 25 FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
F D+A +FSQI+ P++F +N MIR + + QA Y G PD TFPF
Sbjct: 13 FLSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPF 72
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL-YLKCGDVDGGRKMFDKMRVR 143
++K+C I G + HG +K GF +D++VQ++L+ + + KCGDV+ RK+FD+M +
Sbjct: 73 LVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEK 132
Query: 144 SVVSWTTMISGLAASGDLDAA 164
++V+W+TMISG A + D A
Sbjct: 133 NLVTWSTMISGYAQNNHFDKA 153
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 4 IIRYGLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
II++G D + L+ + + G + A +F Q+ ++ TW+ MI + +
Sbjct: 93 IIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDK 152
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ ++ G R ++ + +K G + ++ + + L+D
Sbjct: 153 AVELFKVLQSQGVRANETV----------------------MVIKNGMTLNLILGTALVD 190
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG +D +F+ + R +SWT +I+GLA G
Sbjct: 191 MYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHG 227
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G++ + +L L+D+ + G D A+ VF + +W +I L + G S ++
Sbjct: 173 VIKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERS 232
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
L + M+ G P TF V+ AC +E+ +
Sbjct: 233 LKYFATMVEAGLTPRDITFTAVLSACSHGGLLEEAE 268
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+ + + + + +L+D C+ +T +A VF I CP V+ WN MIR + +
Sbjct: 28 MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 87
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL+ Y M+ G+ PD FTFP+V+KAC I+ G VHG VK GF +M+V + L
Sbjct: 88 DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCL 147
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+ CG+V+ G ++F+ + +VV+W ++ISG + A
Sbjct: 148 LHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDA 191
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 82/151 (54%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A +F + ++ +WN +I + +G + +A+ +++ M+
Sbjct: 234 ILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDL 293
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G PDK TF VI+A + + G+ +H K GF +D + L+++Y K G+ +
Sbjct: 294 GIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESA 353
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+KMF+ + + ++WT +I GLA+ G + A
Sbjct: 354 KKMFEDLEKKDTIAWTVVIIGLASHGHGNKA 384
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + + LL + G+ + L VF I +V W +I + A
Sbjct: 132 VVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G +P++ ++ AC ++ F ++ + ++L+D+
Sbjct: 192 IEAFREMQSIGVKPNETIMVDLLVAC---------GRCFDPYCQSKFEFNVILATSLIDM 242
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+ R +FD M R++VSW ++I+G + +GD + A
Sbjct: 243 YAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEA 283
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD---VDGGRKMFDKMRVRSVVSWTTMISGL 155
++HGL +K+ R++ S L+D C + + R +F+ + SV W +MI G
Sbjct: 22 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 81
Query: 156 AASGDLDAA 164
+ S + D A
Sbjct: 82 SNSPNPDKA 90
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 85/133 (63%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A+ +F QI P +N+MIR T+ S +A+LL+ M N +PD+FTFP ++K C
Sbjct: 75 DYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVC 134
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
A+ +G+++H L +K GF FV++TL+ +Y CG+V+ R++FD+M R+V +W
Sbjct: 135 SRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWN 194
Query: 150 TMISGLAASGDLD 162
+M +G SG+ +
Sbjct: 195 SMFAGYTKSGNWE 207
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + L+ L+D+ + G+ D A +F Q+ V W+ MI + +AL L+
Sbjct: 255 GLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLF 314
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M P++ T ++ +C A+E GK VH K + + + LMD Y KC
Sbjct: 315 HEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKC 374
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G V+ ++F KM V++V+SWT +I GLA++G
Sbjct: 375 GSVESSIEVFGKMPVKNVLSWTVLIQGLASNG 406
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + + L+ + + G+ + A VF ++ +V TWN M T G+ +
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M+ R D+ T V+ AC +E G+ ++ + G + + ++L+D+
Sbjct: 210 VKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDM 269
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG VD R++FD+M R VV+W+ MISG + +
Sbjct: 270 YAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQAS 305
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D + G + ++ VF ++ +V +W ++I+ L +G +AL + LM+ P+
Sbjct: 367 LMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPN 426
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------LMDLYLKCGDVDG 132
TF V+ AC + +++G+++ SRD ++ ++D+ + G ++
Sbjct: 427 DVTFIGVLSACSHAGLVDEGRDLF-----VSMSRDFGIEPRIEHYGCMVDILGRAGLIEE 481
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ M ++ + V W T+++ +++
Sbjct: 482 AFQFIKNMPIQPNAVIWRTLLASCKVHKNVE 512
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 87/156 (55%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L N+ L KL + G A ++F I + F WN MIR +G +++L+LY
Sbjct: 91 LENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYR 150
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+C G R D FT+PFV+KAC L +E G+ VH V G D++V ++L+ +Y K G
Sbjct: 151 EMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFG 210
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+ R +FD+M R + SW TMISG A + D A
Sbjct: 211 DMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTA 246
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +F ++R +WN MI +G + ++L L+ M +G PD+ TF V+ AC
Sbjct: 317 ARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQ 376
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A+ G +H VK GF + V + L+D+Y KCG + R++FD+M +S+VSW+ M
Sbjct: 377 IAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAM 436
Query: 152 ISGLAASG 159
++G G
Sbjct: 437 VAGYGLHG 444
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL +D + LL + + +G A +VF ++ + +WN MI + S
Sbjct: 186 EVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGT 245
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLM 121
A L+++LM G D T ++ AC A+++GK +HG AV+ + F ++L+
Sbjct: 246 AFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLI 305
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++Y C + R++F+++R + VSW +MI G A +GD
Sbjct: 306 EMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGD 344
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 5 IRYGLSNDQLLVRK-----------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRA 53
+RYG+S LV+K L+D+ S G + VF ++ + +W+ M+
Sbjct: 380 LRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAG 439
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSR 112
+ G +A+ + + M N PD F ++ AC + + +GKE+ + + +
Sbjct: 440 YGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKP 499
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
+ S ++DL + G +D + M ++ W +++
Sbjct: 500 ALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTA 542
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I GL + + KLL+ C S G +A L+F Q+ CP WN +IR S +
Sbjct: 27 VIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPI 86
Query: 62 QALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A++ YN M+C+ F PD FTF FV+KAC A K KEVHG ++ G+ D+ V + L
Sbjct: 87 DAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNL 146
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y G V R++FDKM R +V+W MIS + G
Sbjct: 147 VKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQG 185
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G D ++ L+ S G A VF ++ + WN MI + G +A
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEA 190
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L YN M D FT +I +C A+ G ++H A + G + ++V + L+D+
Sbjct: 191 LQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDM 250
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D +FD+M+ + + +W +MI G G
Sbjct: 251 YAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHG 286
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + L+D+ + G D A+L+F +++ +FTWN MI + G +A+ +
Sbjct: 236 GLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCF 295
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M+ +P+ TF ++ C +++G K + ++ K ++ L+DLY +
Sbjct: 296 QQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGR 355
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMI 152
G +D ++ V W ++
Sbjct: 356 AGKLDKALEIVSNSSHNDSVLWRILL 381
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 5 IRYG--LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
IR+G L+N + + L SF +A +FSQI+ P++FTWN MIR + +
Sbjct: 64 IRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMP 123
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M + PD T+PF++KA + + +G++VH +A++ GF +FVQ+TL+
Sbjct: 124 ALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVH 183
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y CG + K+F+ M R++V+W ++I+G A +G
Sbjct: 184 MYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG 220
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + L+ + + G + A +F + ++ TWN +I ++G +AL
Sbjct: 167 IRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEAL 226
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD FT ++ AC A+ G+ H VK G ++ + L+DLY
Sbjct: 227 TLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLY 286
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG + K+FD+M +SVVSWT++I GLA +G
Sbjct: 287 AKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 321
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + LLDL + G A VF ++ V +W +I L ++G +A
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
L L+ + G P + TF V+ AC +++G KE +G+ K
Sbjct: 327 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEH------ 380
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDL 161
++DL + G V + M ++ + V W T++ G L
Sbjct: 381 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHL 426
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+ + + + + +L+D C+ +T +A VF I CP V+ WN MIR + +
Sbjct: 29 MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 88
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL+ Y M+ G+ PD FTFP+V+KAC I+ G VHG VK GF +M+V + L
Sbjct: 89 DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCL 148
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+ CG+V+ G ++F+ + +VV+W ++ISG + A
Sbjct: 149 LHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A +F + + +WN +I + +G + +AL ++ M+
Sbjct: 235 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 294
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G PDK TF VI+A + + G+ +H K GF +D + L+++Y K GD +
Sbjct: 295 GIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESA 354
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K F+ + + ++WT +I GLA+ G + A
Sbjct: 355 KKAFEDLEKKDTIAWTVVIIGLASHGHGNEA 385
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + + LL + G+ ++ L VF I +V W +I + A
Sbjct: 133 VVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M NG + ++ ++ AC K GF ++ + ++L+D+
Sbjct: 193 IEAFREMQSNGVKANETIMVDLLVACGRCFDPY-------FQSKVGF--NVILATSLIDM 243
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+ R +FD M R++VSW ++I+G + +GD + A
Sbjct: 244 YAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEA 284
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD---VDGGRKMFDKMRVRSVVSWTTMISGL 155
++HGL +K+ R++ S L+D C + + R +F+ + SV W +MI G
Sbjct: 23 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 82
Query: 156 AASGDLDAA 164
+ S + D A
Sbjct: 83 SNSPNPDKA 91
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+ + + + + +L+D C+ +T +A VF I CP V+ WN MIR + +
Sbjct: 29 MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 88
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL+ Y M+ G+ PD FTFP+V+KAC I+ G VHG VK GF +M+V + L
Sbjct: 89 DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCL 148
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+ CG+V+ G ++F+ + +VV+W ++ISG + A
Sbjct: 149 LHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A +F + + +WN +I + +G + +AL ++ M+
Sbjct: 252 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 311
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G PDK TF VI+A + + G+ +H K GF +D + L+++Y K GD +
Sbjct: 312 GIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESA 371
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K F+ + + ++WT +I GLA+ G + A
Sbjct: 372 KKAFEDLEKKDTIAWTVVIIGLASHGHGNEA 402
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + + LL + G+ ++ L VF I +V W +I + A
Sbjct: 133 VVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR--------DMF 115
+ + M NG + ++ ++ AC I GK HG GF ++
Sbjct: 193 IEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVI 252
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++L+D+Y KCGD+ R +FD M R++VSW ++I+G + +GD + A
Sbjct: 253 LATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEA 301
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD---VDGGRKMFDKMRVRSVVSWTTMISGL 155
++HGL +K+ R++ S L+D C + + R +F+ + SV W +MI G
Sbjct: 23 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 82
Query: 156 AASGDLDAA 164
+ S + D A
Sbjct: 83 SNSPNPDKA 91
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II +GL+N+ L + KL+ C+ G +A +F QI P+ F +N +IR +
Sbjct: 136 QIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDP 195
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+LL+ MIC+G P++FT PFV+KAC A + VHGLA+K G +FVQ+ L
Sbjct: 196 IDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNAL 255
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ +Y+ CG + RK+FD + +++VSW +MI
Sbjct: 256 IAVYVVCGLIHCARKLFDDITDKTLVSWNSMIE 288
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G + A +F Q+ +V +WN MI +G +AL L+N M + PD+ T +
Sbjct: 340 HGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSI 399
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + GK++H + + + + ++L+D+Y KCG V +F +M +++
Sbjct: 400 LAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNL 459
Query: 146 VSWTTMISGLAASG 159
VSW +I LA G
Sbjct: 460 VSWNVIIGALALHG 473
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 2 QKIIRYGLSNDQ----LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+KI Y LSN L L+D+ + G AL +F ++ ++ +WN++I AL +
Sbjct: 413 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 472
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
G L+A+ L+ M +G PD+ T ++ AC S ++ G
Sbjct: 473 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 513
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMIC 72
L K+L L S + ++A VF I F WN +IRA D S +A +LY M+
Sbjct: 61 FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 120
Query: 73 NG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PDK TFPFV+KAC +GK+VH VK GF D++V + L+ LY CG +D
Sbjct: 121 RGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLD 180
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FD+M RS+VSW +MI L G+ D+A
Sbjct: 181 LARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 213
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+++G D + L+ L G D A VF ++ + +WN MI AL G
Sbjct: 153 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T V+ AC ++ G H ++ + D+ V+++
Sbjct: 213 ALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 271
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y KCG + ++F M+ R + SW MI G A G + A
Sbjct: 272 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 316
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 88/157 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL LV K ++ G+ +A VF + P VF WN +IR +
Sbjct: 93 QLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGD 152
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ +Y+ M +G PD FT P V+KAC +E GK VHG + GF D+FVQ+ L+
Sbjct: 153 AIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVA 212
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG V+ R +F+ + R++VSWT+MISG +G
Sbjct: 213 LYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNG 249
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 4/164 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R G +D + L+ L + G+ + A +VF + ++ +W MI +G ++
Sbjct: 194 QIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQSTL 120
AL ++ M +PD V++A +E+GK +HG VK G F D+ + T
Sbjct: 254 ALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTA 313
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
M Y KCG V R FD+M + +V+ W MISG A +G + A
Sbjct: 314 M--YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEA 355
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLV---FSQIRCPHVFTWNLMIRALTIDGSS 60
+++ GL + L L+ L + Y K ++ F Q+ P+V WN MI +G +
Sbjct: 296 VVKMGLEFEPDL---LISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYT 352
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+ L+ MI R D T I AC +++ K + K + D+FV + L
Sbjct: 353 NEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTAL 412
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D++ KCG VD R++FD+ + VV W+ MI G G
Sbjct: 413 IDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHG 451
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND + L+D+ + G D A VF + V W+ MI + G A+ L+ M
Sbjct: 404 NDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAM 463
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G P+ TF ++ AC S +E+G E+ G + ++DL + G +
Sbjct: 464 KQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHL 523
Query: 131 DGGRKMFDKMRVRSVVS-WTTMI 152
+ M + VS W ++
Sbjct: 524 NEAYDFITTMPIEPGVSVWGALL 546
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMIC 72
L K+L L S + ++A VF I F WN +IRA D S +A +LY M+
Sbjct: 141 FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 200
Query: 73 NG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PDK TFPFV+KAC +GK+VH VK GF D++V + L+ LY CG +D
Sbjct: 201 RGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLD 260
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FD+M RS+VSW +MI L G+ D+A
Sbjct: 261 LARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 293
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+++G D + L+ L G D A VF ++ + +WN MI AL G
Sbjct: 233 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 292
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T V+ AC ++ G H ++ + D+ V+++
Sbjct: 293 ALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 351
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y KCG + ++F M+ R + SW MI G A G + A
Sbjct: 352 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 396
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGK----TDHALLVFSQIRCPHVFT--WNLMIRALTI 56
+I GL +D+ ++ K+ + F+GK D+A +Q HV T +N +I A
Sbjct: 27 HLIASGLLHDEFVLSKVSE---FFGKHIGFVDYAFDFLNQTDL-HVGTLPYNTLIAAYAS 82
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+ A L+Y ++ NGF PD +TFP V+KAC L +++G++VHG+AVK GF D++V
Sbjct: 83 SCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYV 142
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Q++L+ Y CG G ++FD+M VR VVSWT +ISG +G D A
Sbjct: 143 QNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D + LL S GK A VF ++ V +W +I G +A+
Sbjct: 132 VKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAI 191
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
NL + P+ TF V+ AC + GK VHGL K F + V + L+D+Y
Sbjct: 192 ---NLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMY 248
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+KC + RK+FD++ R +VSWT++ISGL
Sbjct: 249 VKCECLCEARKLFDELPDRDIVSWTSIISGL 279
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I R G+ D + L+D+ + G + AL +F+ I ++FTWN ++ L + G
Sbjct: 328 EYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGH 387
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE--VHGLAVKAGFSRDMFVQST 119
+AL + LMI G RP++ TF ++ AC S + +G+ ++ FS +
Sbjct: 388 EALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGC 447
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++DL + G +D K M + V+ W ++S A+G+++
Sbjct: 448 MIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVE 491
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ + +W +I L +L L+ M +G PD+ V+ AC + A
Sbjct: 260 LFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGA 319
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ G+ V + G D+ + + L+D+Y KCG ++ +F+ + R++ +W ++ G
Sbjct: 320 LDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGG 379
Query: 155 LAASG 159
LA G
Sbjct: 380 LAMHG 384
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 4/159 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRC-PHVFTWNLMIRALTID 57
+ + + GL ND + KL+ G + A VF F +N +IR
Sbjct: 53 RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G +A+LL+ M+ +G PDK+TFPF + AC S A G ++HGL VK G+++D+FVQ
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQ 172
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++L+ Y +CG++D RK+FD+M R+VVSWT+MI G A
Sbjct: 173 NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYA 211
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 84/157 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + L+V L+D+ D A +F + ++ N M G + +AL ++
Sbjct: 266 GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF 325
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
NLM+ +G RPD+ + I +C I GK HG ++ GF + + L+D+Y+KC
Sbjct: 326 NLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKC 385
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D ++FD+M ++VV+W ++++G +G++DAA
Sbjct: 386 HRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + D + L+ + G+ D A VF ++ +V +W MI + A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M+ + P+ T VI AC +E G++V+ +G + + S L+D
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
Query: 123 LYLKCGDVDGGRKMFDK 139
+Y+KC +D +++FD+
Sbjct: 280 MYMKCNAIDVAKRLFDE 296
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G+ D A F + ++ +WN +I L +A+ ++ ++ G D T +
Sbjct: 417 GEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSI 476
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC A++ K ++ K G D+ + +TL+D++ +CGD + +F+ + R V
Sbjct: 477 ASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDV 536
Query: 146 VSWT 149
+WT
Sbjct: 537 SAWT 540
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D L L+D+ S G + A+ +F+ + V W I A+ + G++ +A
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
+ L++ MI G +PD F + AC +++GKE+ +K G S + ++D
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G ++ ++ + M + + V W ++++ G+++ A
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 4/159 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRC-PHVFTWNLMIRALTID 57
+ + + GL ND + KL+ G + A VF F +N +IR
Sbjct: 53 RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G +A+LL+ M+ +G PDK+TFPF + AC S A G ++HGL VK G+++D+FVQ
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQ 172
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++L+ Y +CG++D RK+FD+M R+VVSWT+MI G A
Sbjct: 173 NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYA 211
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G+ + L+V L+D+ D A +F + ++ N M G + +A
Sbjct: 262 IRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREA 321
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++NLM+ +G RPD+ + I +C I GK HG ++ GF + + L+D+
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KC D ++FD+M ++VV+W ++++G +G++DAA
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + D + L+ + G+ D A VF ++ +V +W MI + A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M+ + P+ T VI AC +E G++V+ +G + + S L+D
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
Query: 123 LYLKCGDVDGGRKMFDK 139
+Y+KC +D +++FD+
Sbjct: 280 MYMKCNAIDVAKRLFDE 296
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G+ D A F + ++ +WN +I L +A+ ++ ++ G D T +
Sbjct: 417 GEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSI 476
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC A++ K ++ K G D+ + +TL+D++ +CGD + +F+ + R V
Sbjct: 477 ASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDV 536
Query: 146 VSWT 149
+WT
Sbjct: 537 SAWT 540
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D L L+D+ S G + A+ +F+ + V W I A+ + G++ +A
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
+ L++ MI G +PD F + AC +++GKE+ +K G S + ++D
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G ++ ++ + M + + V W ++++ G+++ A
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMIC 72
L K+L L S + ++A VF I F WN +IRA D S +A +LY M+
Sbjct: 75 FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 134
Query: 73 NG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PDK TFPFV+KAC +GK+VH VK GF D++V + L+ LY CG +D
Sbjct: 135 RGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLD 194
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FD+M RS+VSW +MI L G+ D+A
Sbjct: 195 LARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 227
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+++G D + L+ L G D A VF ++ + +WN MI AL G
Sbjct: 167 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 226
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T V+ AC ++ G H ++ + D+ V+++
Sbjct: 227 ALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 285
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y KCG + ++F M+ R + SW MI G A G + A
Sbjct: 286 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 330
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMIC 72
L K+L L S + ++A VF I F WN +IRA D S +A +LY M+
Sbjct: 84 FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 143
Query: 73 NG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PDK TFPFV+KAC +GK+VH VK GF D++V + L+ LY CG +D
Sbjct: 144 RGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLD 203
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FD+M RS+VSW +MI L G+ D+A
Sbjct: 204 LARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 236
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+++G D + L+ L G D A VF ++ + +WN MI AL G
Sbjct: 176 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 235
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T V+ AC ++ G H ++ + D+ V+++
Sbjct: 236 ALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 294
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y KCG + ++F M+ R + SW MI G A G + A
Sbjct: 295 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 339
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KL++ C D +A+ VF I+ P++ WN M R +
Sbjct: 12 QMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 71
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPF++K+C S A ++G+++HG +K G D++V ++
Sbjct: 72 PVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 131
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ K+FD+ R VVS+T +I G A+ G ++ A
Sbjct: 132 LISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENA 176
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A +F +I V +WN MI G+ +AL L+ M+ RPD+ T V+
Sbjct: 171 GYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 230
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + + L+DLY KCG+++ +F+ + + V+
Sbjct: 231 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVI 290
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 291 SWNTLIGG 298
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F + V +WN +I T +ALLL
Sbjct: 252 HGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLL 311
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AI+ G+ +H K G + ++++L+D+Y
Sbjct: 312 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMY 371
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ + +S+ SW MI G A G DA+
Sbjct: 372 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAS 411
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF+ I + +WN MI + G + + ++
Sbjct: 356 GVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIF 415
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M NG PD TF ++ AC S ++ G+ + + + + ++DL
Sbjct: 416 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGH 475
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
G +M + M + V W +++ G+++
Sbjct: 476 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 512
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGK----TDHALLVFSQIRCPHVFT--WNLMIRALTI 56
+I GL +D+ ++ K+ + F+GK D+A +Q HV T +N +I A
Sbjct: 27 HLIASGLLHDEFVLSKVSE---FFGKHIGFVDYAFDFLNQTDL-HVGTLPYNTLIAAYAS 82
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+ A L+Y ++ NGF PD +TFP V+KAC L +++G++VHG+AVK GF D++V
Sbjct: 83 SCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYV 142
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Q++L+ Y CG G ++FD+M VR VVSWT +ISG +G D A
Sbjct: 143 QNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D + LL S GK A VF ++ V +W +I G +A+
Sbjct: 132 VKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAI 191
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
NL + P+ TF V+ AC + GK VHGL K F + V + L+D+Y
Sbjct: 192 ---NLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMY 248
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+KC + RK+FD++ R +VSWT++ISGL
Sbjct: 249 VKCECLCEARKLFDELPDRDIVSWTSIISGL 279
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ + +W +I L +L L+ M +G PD+ V+ AC + A
Sbjct: 260 LFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGA 319
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ G+ V + G D+ + + L+D+Y KCG ++ +F+ + R++ +W ++ G
Sbjct: 320 LDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGG 379
Query: 155 LAASG 159
LA G
Sbjct: 380 LAMHG 384
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I R G+ D + L+D+ + G + AL +F+ I ++FTWN ++ L + G
Sbjct: 328 EYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGH 387
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE--VHGLAVKAGFSRDMFVQST 119
+AL + LMI G RP++ TF ++ AC S + +G+ ++ FS +
Sbjct: 388 EALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGC 447
Query: 120 LMDLYLKCGDVD 131
++DL + G +D
Sbjct: 448 MIDLLCRAGLLD 459
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 4/151 (2%)
Query: 18 KLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMICNG 74
K++ C S YG D+A +FSQI+ P++F+WN MIR + + S + ++L+ M+ G
Sbjct: 27 KIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRG 86
Query: 75 F-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+ P+ FT FV+KAC A+E+G++VH +K+GF FV++ L++ Y KC D+
Sbjct: 87 YPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLA 146
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD++ R++V+W+TMISG A G ++ A
Sbjct: 147 SKVFDEITDRNLVAWSTMISGYARIGLVNEA 177
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY K + +L VF +I ++ W+ MI G +AL L+ M G PD
Sbjct: 133 LVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPD 192
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T VI AC AS A++ GK VH K D+ + + L+++Y KCG ++ +++FD
Sbjct: 193 EVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFD 252
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M V+ +W++MI GLA +G
Sbjct: 253 AMPVKDTKAWSSMIVGLAING 273
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ D L L+++ + G + A VF + W+ MI L I+G + AL +
Sbjct: 224 IETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFF 283
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M +P+ TF V+ AC S + +G+ ++ G M + ++DL +
Sbjct: 284 RMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRAS 343
Query: 129 DVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
V+ + + M + + V W T++ G S +LD +
Sbjct: 344 LVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKS 380
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 4/151 (2%)
Query: 18 KLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMICNG 74
K++ C S YG D+A +FSQI+ P++F+WN MIR + + S + ++L+ M+ G
Sbjct: 96 KIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRG 155
Query: 75 F-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+ P+ FT FV+KAC A+E+G++VH +K+GF FV++ L++ Y KC D+
Sbjct: 156 YPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLA 215
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD++ R++V+W+TMISG A G ++ A
Sbjct: 216 SKVFDEITDRNLVAWSTMISGYARIGLVNEA 246
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY K + +L VF +I ++ W+ MI G +AL L+ M G PD
Sbjct: 202 LVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPD 261
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T VI AC AS A++ GK VH K D+ + + L+++Y KCG ++ +++FD
Sbjct: 262 EVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFD 321
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M V+ +W++MI GLA +G
Sbjct: 322 AMPVKDTKAWSSMIVGLAING 342
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ D L L+++ + G + A VF + W+ MI L I+G + AL +
Sbjct: 293 IETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFF 352
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M +P+ TF V+ AC S + +G+ ++ G M + ++DL +
Sbjct: 353 RMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRAS 412
Query: 129 DVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
V+ + + M + + V W T++ G S +LD +
Sbjct: 413 LVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKS 449
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++ GL D++ KLL C+ G +A VF +I P+ F WN MIR +
Sbjct: 40 QMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEP 99
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ALLLY+ M+ + + +TFPF++KAC + A+E+ +++H +K GF +++ ++L
Sbjct: 100 EEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSL 159
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++Y K GD+ R +FD++ R VSW +MI G G+++ A
Sbjct: 160 LNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F+ + ++ +W MI G +AL L++ M G + D +
Sbjct: 198 GEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTL 257
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+AC +++GK +H K D + L+D+Y KCGD++ ++F KM + V
Sbjct: 258 QACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS 317
Query: 147 SWTTMISGLAASG 159
WT MISG A G
Sbjct: 318 VWTAMISGYAIHG 330
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ + D +L L+D+ + G + A+ VF ++ V W MI I G +A
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-------ASLAIEKGKEVHGLAVKAGFSRDMFV 116
L + M G P++ TF ++ AC A L E + +H GF +
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH------GFKPSIEH 389
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
++DL + G + ++ + M V+ + W +++ G+L+
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 436
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++ GL + + +LL CS + G +A VF +I P + N +I+ ++G+
Sbjct: 27 QVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNTIIKTFLVNGNF 86
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++ M+ NG PD +T P+V+KAC A GK VHG + K G D+FV ++L
Sbjct: 87 YGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSL 146
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
M +Y CGDV R +FD+M S VSW+ MISG A GD+D+A
Sbjct: 147 MAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSA 190
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A L F + W MI + + L L+ L+ PD+ F ++
Sbjct: 185 GDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSIL 244
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G +H + S + + ++L+D+Y KCG+++ +++FD M R +V
Sbjct: 245 SACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIV 304
Query: 147 SWTTMISGLAASGD 160
W MISGLA GD
Sbjct: 305 CWNAMISGLAMHGD 318
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L LLD+ + G + A +F + + WN MI L + G AL +++ M G
Sbjct: 274 LSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTG 333
Query: 75 FRPDKFTFPFVIKACIASLAIEKG 98
+PD TF V AC S +G
Sbjct: 334 IKPDDITFIAVFTACSYSGMAHEG 357
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I + D + + +L+D C++ G ++A VF+QI P ++ WN MI+ +I S
Sbjct: 28 MITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPD 87
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +Y M G+ PD FTFPFV+KAC G+ VH VK GF D++ + L+
Sbjct: 88 EALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALL 147
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y CGD++ K+FD + +VV+WT++I+G
Sbjct: 148 QMYAACGDMEAALKVFDDIPKWNVVAWTSLIAG 180
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 82/151 (54%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L ++D+ + G A +F+++ ++ WN MI A G + +AL L++ M
Sbjct: 249 ILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIA 308
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
GF PDK TF VI AC A+ G+ +H K + D + + L+D+Y K GD +
Sbjct: 309 GFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERA 368
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++F +++ + V +WT++I GLA G + A
Sbjct: 369 QQVFSELQKKDVTAWTSLIIGLAMHGHGEEA 399
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D LL + + G + AL VF I +V W +I + +A
Sbjct: 131 IVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEA 190
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-------DMFV 116
+ +Y M P++ T V+ AC S + G+ VH + G ++ +
Sbjct: 191 VRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVIL 250
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++D+Y KCG + R +F+KM R++V+W +MI G + A
Sbjct: 251 ATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEA 298
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + L++D + L+D+ + G + A VFS+++ V W +I L + G +A
Sbjct: 340 VSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEA 399
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
L + M + PD+ T+ V+ AC +E GK H +++K + Q +
Sbjct: 400 LTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKN-HFISMKNVHGIEPTTQHYGCM 458
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+DL + G + ++ +KM V + W+ +++G ++D A
Sbjct: 459 VDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVA 503
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 89/153 (58%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D+ + L+D+ S G D A L+F +I+ V WN MI + G+SL+A+ L++ M
Sbjct: 435 DEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMY 494
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
N ++ TF I+AC +EKGK +H + G +D+F+ + L+D+Y KCGD+
Sbjct: 495 LNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLR 554
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++FD M RSVVSW+ MI G GD+DAA
Sbjct: 555 IAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAA 587
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D KL++ S G + LVF + P F W ++I+ +A+ LY
Sbjct: 28 GLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNFCGEAISLY 87
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N MI F F V++AC ++ G+EVHG +K G D V+++L+ +Y
Sbjct: 88 NKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDL 147
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
G + +K+FD M R +VSW+++IS +G+
Sbjct: 148 GCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGE 180
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+D L L++ + +GK + V I ++ +WN++I G +AL ++ M
Sbjct: 334 DDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQM 393
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G PD F+ I AC + G ++HG A+K D FVQ++L+D+Y KCG V
Sbjct: 394 QRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHI-LDEFVQNSLIDMYSKCGHV 452
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D +FD+++ +SVV+W +MI G + G+
Sbjct: 453 DLAYLIFDRIQSKSVVAWNSMICGFSQIGN 482
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+YGL D ++ LL + G +A VF + + +W+ +I +G S +
Sbjct: 124 RIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSE 183
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L ++ L++ D T + AC + K VHG ++ + L+
Sbjct: 184 GLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVL 243
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+Y +C D ++F M RS+ SWT MIS
Sbjct: 244 MYSRCDDFSSAERIFSNMFNRSIASWTAMIS 274
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
K+I YG+ D + L+D+ + G A VF + V +W+ MI + G
Sbjct: 526 HKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDID 585
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ MI +P+ TF ++ AC S +E+GK ++ + ++
Sbjct: 586 AAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFACMV 645
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
DL + GD+D ++ + M + S W +++G
Sbjct: 646 DLLSRAGDLDEAYRIINSMPFPAEASIWGALLNG 679
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+I G ND L++ + C + + +FS + + +W MI
Sbjct: 229 QRIETRGPLNDALVL--MYSRCDDFSSAER---IFSNMFNRSIASWTAMISCYNRSRWFK 283
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
QAL ++ M+ P+ T V+ +C + +GK VH AVK D + L+
Sbjct: 284 QALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALI 343
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y + G + K+ + R+++SW +IS A+ G
Sbjct: 344 EYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQG 381
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I + D + + +L+D C++ G ++A VF+QI P ++ WN MI+ +I S
Sbjct: 28 MITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPD 87
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +Y M G+ PD FTFPFV+KAC G+ VH VK GF D++ + L+
Sbjct: 88 EALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALL 147
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y CGD++ K+FD + +VV+WT++I+G
Sbjct: 148 QMYAACGDMEAALKVFDDIPKWNVVAWTSLIAG 180
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%)
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G + +AL L++ M GF PDK TF VI AC A+ G+ +H K + D +
Sbjct: 267 GQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIG 326
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L+D+Y K GD + +++F +++ + V +WT++I GLA G + A
Sbjct: 327 TALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEA 373
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + L++D + L+D+ + G + A VFS+++ V W +I L + G +A
Sbjct: 314 VSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEA 373
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
L + M + PD+ T+ V+ AC +E GK H +++K + Q +
Sbjct: 374 LTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKN-HFISMKNVHGIEPTTQHYGCM 432
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+DL + G + ++ +KM V + W+ +++G ++D A
Sbjct: 433 VDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVA 477
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 12/151 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D LL + + G + AL VF I +V W +I + +A
Sbjct: 131 IVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEA 190
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-------DMFV 116
+ +Y M P++ T V+ AC S + G+ VH + G ++ +
Sbjct: 191 VRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVIL 250
Query: 117 QSTLMDLYLKC-----GDVDGGRKMFDKMRV 142
+ ++D+Y KC G + +F MR+
Sbjct: 251 ATAIVDMYAKCAYNQYGQANEALDLFSDMRI 281
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 96/162 (59%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G++ + L KL++ S +A +F +I ++F WN++IRA +G
Sbjct: 83 RLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHET 142
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY+ M+ G +PD FT PFV+KAC A I +G+ +H +++G+ RD+FV + L+D
Sbjct: 143 AISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVD 202
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V R +FDK+ R V W +M++ A +G D +
Sbjct: 203 MYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDES 244
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+++IR G D + L+D+ + G A VF +I WN M+ A +G
Sbjct: 183 ERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPD 242
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
++L L M G RP + T VI + + G+E+HG + GF + V++ L+
Sbjct: 243 ESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALI 302
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y KCG V +F+++R + VVSW +I+G A G
Sbjct: 303 DMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHG 340
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 13/166 (7%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+G + + L+D+ + G A ++F ++R V +WN +I + G +++AL
Sbjct: 288 RHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALD 347
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------ 119
L+ M+ +PD TF + AC +++G+ ++ L V RD + T
Sbjct: 348 LFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMV-----RDCRINPTVEHYTC 401
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++DL CG +D + +M V W +++ G+++ A
Sbjct: 402 MVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELA 447
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 47/87 (54%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ + + ++++CI++ A+E GK++H + G + ++ + + L++ Y C + +F
Sbjct: 57 NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
DK+ ++ W +I A +G + A
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETA 143
>gi|224058585|ref|XP_002299553.1| predicted protein [Populus trichocarpa]
gi|222846811|gb|EEE84358.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++ + G + L + +LL S Y ++A +F+ + P+ F +N+MIR
Sbjct: 47 RLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRGYAQREKP 106
Query: 61 LQALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
AL L+ M+CN P+K TFPFV+KAC AIE+GK+VHGL K G S D+FVQ++
Sbjct: 107 ENALSLFYSMLCNANSGPNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNS 166
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y CG + ++F+K+ VVSW +MISGL G
Sbjct: 167 LINMYSSCGLIGFACQVFNKIDDLDVVSWNSMISGLVDLG 206
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Query: 19 LLDLCSFYGKTDHALL---VFSQIRCPHV--FTWNLMIRALTIDGSSLQALLLYNLMICN 73
L++L Y + L VF +I P + W+LMIRA +G + +AL LY M+ +
Sbjct: 38 LVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNS 97
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G RP KFT+PFV+KAC AIE GK +H + F+ DM+V + L+D Y KCG++D
Sbjct: 98 GVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMA 157
Query: 134 RKMFDKMRVRSVVSWTTMISGLA 156
K+FD+M R +V+W MISG +
Sbjct: 158 IKVFDEMPKRDIVAWNAMISGFS 180
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G D + ++ + YG A F++I + ++N +I + + ++
Sbjct: 335 IKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRAEESF 394
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M +G RPD T ++ AC A+ G HG V G++ + + + LMD+Y
Sbjct: 395 RLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMDMY 454
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG + +++FD M R +VSW TM+ G G
Sbjct: 455 TKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLM 70
D + L+D + G+ D A+ VF ++ + WN MI ++ + L+ ++
Sbjct: 137 DMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMR 196
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ P+ T + A + A+ +GK VHG + GFS D+ V++ ++D+Y K +
Sbjct: 197 RSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCI 256
Query: 131 DGGRKMFDKMRVRSVVSWTTMISG 154
R++FD ++ V+W+ MI G
Sbjct: 257 IYARRVFDSDFKKNEVTWSAMIGG 280
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
R G SND ++ +LD+ Y K+ +A VF + TW+ MI + +
Sbjct: 233 RMGFSNDLVVKTGILDV---YAKSKCIIYARRVFDSDFKKNEVTWSAMIGGYVENEMIKE 289
Query: 63 ALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A ++ M+ N ++ C + G+ VH A+KAGF D+ V +T+
Sbjct: 290 AGEVFLQMLVNADMAMVTPVAIGLILMGCARFGDLSGGRCVHCYAIKAGFILDLTVGNTV 349
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ Y K G + + F ++ ++ +VS+ ++ISG
Sbjct: 350 ISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISG 383
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + + + L+D+ + GK A VF + + +WN M+ I G +AL L+
Sbjct: 439 GYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLF 498
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS--RDMFVQSTLMDLYL 125
N M G PD+ T ++ AC S +++GK++ + F+ + + + DL
Sbjct: 499 NSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLA 558
Query: 126 KCGDVDGGRKMFDKM 140
+ G +D +KM
Sbjct: 559 RAGYLDEAYDFVNKM 573
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
II+ GL N + KL++ S G +A+ +F+ I P++F WN MIR L++ S
Sbjct: 52 IIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPA 111
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL+ + MI +G P+ +TFPF++K+C + +GK++H +K GF D+F+ ++L+
Sbjct: 112 LALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLI 171
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y + G+++ + +FD+ R +S+T +I+G A G +D A
Sbjct: 172 NMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRA 214
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL ++ LV L+D+ S G A +F + V +WN+MI T S +AL L+
Sbjct: 291 GLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALF 350
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G P + TF ++ +C AI+ GK +H K S + ++L+DLY KC
Sbjct: 351 REMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKC 410
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G++ R++FD M+++S+ SW MI GLA G D A
Sbjct: 411 GNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKA 447
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
+ +G D A +F ++ V +WN MI G S +ALLL+ M P++ T
Sbjct: 206 ALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIV 265
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
V+ AC S A++ G + G ++ + + L+D+Y KCGD+ R++FD M R
Sbjct: 266 SVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLER 325
Query: 144 SVVSWTTMISG 154
V+SW MI G
Sbjct: 326 DVISWNVMIGG 336
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
+DL + G A VF ++ + +WN MI L + G + +A L++ M +G P++
Sbjct: 404 IDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNE 463
Query: 80 FTFPFVIKACIASLAIEKGKE 100
TF ++ AC + ++ G++
Sbjct: 464 ITFVGILSACKHAGLVDLGQQ 484
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 36/198 (18%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II +GL+N+ L + KL+ C+ G +A +F QI P+ F +N +IR +
Sbjct: 10 QIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDP 69
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+LL+ MIC+G P++FT PFV+KAC A + VHGLA+K G +FVQ+ L
Sbjct: 70 IDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNAL 129
Query: 121 M----------------------------------DLYLKCGDVDGGRKMFDKMRVRSVV 146
+ D+Y KCG++ + +FD+ + ++VV
Sbjct: 130 IAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVV 189
Query: 147 SWTTMISGLAASGDLDAA 164
SWT+MIS A G ++ A
Sbjct: 190 SWTSMISAYAQHGSIEVA 207
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G + A +F Q+ +V +WN MI +G +AL L+N M + PD+ T +
Sbjct: 201 HGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSI 260
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + GK++H + + + + ++L+D+Y KCG V +F +M +++
Sbjct: 261 LAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNL 320
Query: 146 VSWTTMISGLAASG 159
VSW +I LA G
Sbjct: 321 VSWNVIIGALALHG 334
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 2 QKIIRYGLSNDQ----LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+KI Y LSN L L+D+ + G AL +F ++ ++ +WN++I AL +
Sbjct: 274 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 333
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
G L+A+ L+ M +G PD+ T ++ AC S ++ G
Sbjct: 334 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 374
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYG-KTDH----ALLVFSQIRCPHVFTWNLMIRALT 55
+ I G+ D ++ KLL +Y DH + +F QI P+VF+WN M RA +
Sbjct: 48 LSHAIASGVFRDPVVSSKLL----YYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYS 103
Query: 56 IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+ + LYNLM+ NG PD ++FPFV+KAC + KG+E+H +K G D+F
Sbjct: 104 RSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVF 163
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGDLDAA 164
VQ+ L+ + CG V+ R +FD + VR VVSW +MISG S + A
Sbjct: 164 VQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELA 214
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQ 62
++ G+ D + L+ S G + A VF + V +WN MI
Sbjct: 154 LKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYEL 213
Query: 63 ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL ++ ++ +G PD+ T + C ++ GK++HGL +GF D+FV S+L+
Sbjct: 214 ALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLI 273
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
D+Y KCG ++ RK+FD++ R+ V WT+MI+G A S
Sbjct: 274 DMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQS 310
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D + L+D+ S G+ + A VF +I + W MI +A+ L+
Sbjct: 261 GFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELF 320
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M GF D T V+ AC A+ +G+ +H + D+ ++ L+ +Y KC
Sbjct: 321 REMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKC 380
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GD+ ++F + + SW+ +ISGLA +G+ D A
Sbjct: 381 GDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKA 417
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM-ICNGFRP 77
L+ + S G AL +F + P +F+W+ +I L ++G S +AL L++ M + + RP
Sbjct: 373 LIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRP 432
Query: 78 DKFTFPFVIKACIASLAIEKG 98
++ TF V+ AC ++KG
Sbjct: 433 NEITFLGVLCACNHGGFVDKG 453
>gi|224098349|ref|XP_002311155.1| predicted protein [Populus trichocarpa]
gi|222850975|gb|EEE88522.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL ND L L+ + K ++A +F + P V +N +IRA + + +A+ +Y
Sbjct: 60 GLQNDHLTNAHLIKSYLLFLKCNYARFLFDSLPNPSVMLYNSIIRAYSRTKNHQEAINIY 119
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M+ G PDK+TF FV+KAC +L ++G VH + G RD F+ ++L+D+Y K
Sbjct: 120 HCMLNKGLEPDKYTFTFVLKACTGALYFKEGILVHKDIIVRGLERDAFIGTSLVDMYCKM 179
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
GD+ RK+FDKM + VV+W+ MI GL+ S D
Sbjct: 180 GDLKLARKVFDKMPEKDVVAWSAMILGLSQSED 212
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ II GL D + L+D+ G A VF ++ V W+ MI L+
Sbjct: 155 KDIIVRGLERDAFIGTSLVDMYCKMGDLKLARKVFDKMPEKDVVAWSAMILGLSQSEDPN 214
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ M +G + + ++ A I+ + +HG ++ GF D V + L+
Sbjct: 215 EVFGFIRSMQLSGVELNLVSILNLVPAVSRLGDIDACRCIHGYVIRRGF--DAIVSNGLI 272
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D+Y K G++D GR++F+ M + VSW TM++G
Sbjct: 273 DMYSKSGNIDVGRQIFEYMPDKDDVSWGTMMAG 305
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
N + +LL+ C D +A+ VF I P++ WN M R ++ S+ AL LY
Sbjct: 2 NTNYALSQLLEFCVLSPHFDGLPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLY 61
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
MI G P+ ++FPF++K+C S A +G+++HG VK G+ DM+V ++L+ +Y +
Sbjct: 62 VCMISLGLLPNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQN 121
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G ++ K+FD+ R VVS+T +I+G A+ G +A
Sbjct: 122 GRLEDAHKVFDRSSHRHVVSYTALITGYASRGYTKSA 158
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 68/128 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G T A +F +I + +WN MI + +AL LY M+ +PD+ T V+
Sbjct: 153 GYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVV 212
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S IE G++VH L GF ++ V + LMD+Y KCG+++ ++F + + +
Sbjct: 213 SACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAI 272
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 273 SWNTLIGG 280
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +G ++ +V L+D+ S G+ + A +F + +WN +I T +A
Sbjct: 231 IEDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEA 290
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLM 121
L L+ M+ +G P+ T V+ AC AI+ G+ +H K G + ++++L+
Sbjct: 291 LFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLI 350
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCGD++ ++FD M RS+ SW MI G A G +AA
Sbjct: 351 DMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAA 393
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF + + +WN MI + G + A L+
Sbjct: 338 GVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLF 397
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M +G PD TF ++ AC S ++ G+ +
Sbjct: 398 SKMRKSGIEPDDITFVGLLSACSHSGMLDLGRHI 431
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 92/161 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ + D L+ + + CS + + D+A+L F+ ++ P+VF +N MIRAL +QA
Sbjct: 35 MIKANANQDCFLMNQFIAACSIFHRIDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQA 94
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M+ P FTF ++KAC + G+ VHG K GF +FVQ+ L+D
Sbjct: 95 LDCYLDMVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDF 154
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G + R++FD+M R V +WTTMIS A +GD+ +A
Sbjct: 155 YGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSA 195
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D +L+VF ++R ++F WN +I L + G + +AL +++ M +P+ TF V+ AC
Sbjct: 255 DKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGAC 314
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQS--TLMDLYLKCGDVDGGRKMFDKMRVR-SVV 146
+ +E+G++ L++ FS ++ ++DL K G ++ ++ MR+ + V
Sbjct: 315 THAGLVEEGRK-RFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSV 373
Query: 147 SWTTMISGLAASGDLDAA 164
W ++ G +L A
Sbjct: 374 IWGALLGGCKLHRNLKIA 391
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I++ GL D L+ C+ +G D+A +F Q+ P F +N M+R D ++
Sbjct: 10 RILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNT 69
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL+ Y M G +PD FT+P ++KAC A+E+G +VH +K G D+FVQ++L
Sbjct: 70 EEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSL 129
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +Y KCG++ +F++M RSV SW+ +I+ A+ G
Sbjct: 130 ISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG 168
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL ND + L+ + G+ VF Q+ V +W+ +I A G
Sbjct: 114 ILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDC 173
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L M G+ R ++ V+ AC A++ G+ VHG ++ ++ V+++L++
Sbjct: 174 LRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIE 233
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+YLKCG + G +F KM ++ +S++ MISGLA G
Sbjct: 234 MYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHG 270
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+ +F ++ + ++++MI L + G + L ++ M+ G PD + V+ AC
Sbjct: 244 GMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSH 303
Query: 92 SLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWT 149
+ +++G + + + ++ G + ++DL + G +D ++ M + + V W
Sbjct: 304 AGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWR 363
Query: 150 TMISGLAASGDLDAA 164
+++S +L A
Sbjct: 364 SLLSASKVHNNLQAG 378
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ LS LV K+LD C G +A L+F Q+ P++FT+N +IR + A
Sbjct: 33 VVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSA 92
Query: 64 LLLYNLMIC---NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ ++ M+ N PDKFTFPFVIK+C L G +VHGL K G ++ L
Sbjct: 93 ISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENAL 152
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y K GD+ K+F++M R V+SW ++I G G +++A
Sbjct: 153 IDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSA 196
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F + + +W MI G AL ++ M G PD+ + V+
Sbjct: 191 GQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVL 250
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E GK +H A K GF R + + L+++Y KCG +D +FD++ + V+
Sbjct: 251 PACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVI 310
Query: 147 SWTTMISGLAASG 159
SW+TMI GLA G
Sbjct: 311 SWSTMIGGLANHG 323
>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 637
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 92/157 (58%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL D +L KL+DL + G HA +F + +VF WN++IRA DG
Sbjct: 87 RLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEV 146
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY M+ G PD FT+P +KAC A L +E G+EVH + + DMFV + L+D
Sbjct: 147 AIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVD 206
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG VD R +FD++RVR V W +MI+ +G
Sbjct: 207 MYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNG 243
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++++ D + L+D+ + G D A VF +IR WN MI A +G +
Sbjct: 187 ERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPM 246
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L M NG P T I A + A+ +G+E+HG + GF R ++++L+
Sbjct: 247 EALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLV 306
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y K G V R +F+++ R +VSW MI G G D A
Sbjct: 307 DMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEA 349
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 77 PDKFT-FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
P+ + + V+++C+AS ++ G+++HG + +G D + + L+DLY CG V R+
Sbjct: 59 PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD M R+V W +I A G + A
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVA 147
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G L L+D+ + G A ++F Q+ + +WN MI + G +AL
Sbjct: 292 RRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALK 351
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
L+N M PD TF V+ AC +++ KE GL V
Sbjct: 352 LFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMV 393
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I GL++ ++R+L+ + + G D+A +F+QI P +F WN MIR
Sbjct: 36 LIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPA 95
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY M G RPDKFTF FV+KAC ++ G +HG +K+GF + FV++TL+
Sbjct: 96 TAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLI 155
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ CGD+ R +FD R VV W+ + +G A G LD A
Sbjct: 156 YFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVA 198
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ + A +F ++ V TWN MI + + +AL +++ M G RPD T +
Sbjct: 223 HGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSI 282
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSR-----DMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
+ A +E GK++H ++ F + + + L+D+Y KCG + ++F M
Sbjct: 283 LSASADLGDLEIGKKIH----RSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGM 338
Query: 141 RVRSVVSWTTMISGLAASGDLDAA 164
R + SW ++I GLA G + +
Sbjct: 339 RKKDTSSWNSIIGGLALHGHAEES 362
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
LL L+D+ + G +AL VF +R +WN +I L + G + +++ L+ M+
Sbjct: 313 LLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRL 372
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVD 131
+P++ TF V+ AC + + +G+ L +K F + ++ ++D+ + G +
Sbjct: 373 KMKPNEITFVAVLVACSHAGKVREGRMYFNL-MKNVFKIEPNIKHYGCMVDILGRAGLLI 431
Query: 132 GGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
D M + + + W T++ GD++
Sbjct: 432 EAFDFIDTMEIEPNAIIWRTLLGACRVHGDVE 463
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++ GL D++ KLL C+ G +A VF +I P+ F WN MIR +
Sbjct: 40 QMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEP 99
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ALLLY+ M+ + + +TFPF++KAC + A E+ +++H +K GF +++ ++L
Sbjct: 100 EEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSL 159
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++Y K GD+ R +FD++ R VSW +MI G G+++ A
Sbjct: 160 LNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F+ + ++ +W MI G +AL L++ M G + D +
Sbjct: 198 GEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTL 257
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+AC +++GK +H K D + L+D+Y KCGD++ ++F KM + V
Sbjct: 258 QACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS 317
Query: 147 SWTTMISGLAASG 159
WT MISG A G
Sbjct: 318 VWTAMISGYAIHG 330
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ + D +L L+D+ + G + A+ VF ++ V W MI I G +A
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-------ASLAIEKGKEVHGLAVKAGFSRDMFV 116
L + M G P++ TF ++ AC A L E + +H GF +
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH------GFKPSIEH 389
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
++DL + G + ++ + M V+ + W +++ G+L+
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 436
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 5 IRYGLS--NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
IR+G+S N + + + S +A VF+ I P+VFTWN +IR +
Sbjct: 42 IRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSP 101
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L Y M+ + PD T+PF++KA SL + +G+ +H + ++ GF +FVQ++L+
Sbjct: 102 AFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLH 161
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y CGD + K+F+ M+ R +V+W +MI+G A +G
Sbjct: 162 IYAACGDTESAYKVFELMKERDLVAWNSMINGFALNG 198
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 84/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + LL + + G T+ A VF ++ + WN MI ++G +AL
Sbjct: 145 IRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEAL 204
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD FT ++ A A+E G+ VH +K G S++ V ++L+DLY
Sbjct: 205 TLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLY 264
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG + +++F +M R+ VSWT++I GLA +G
Sbjct: 265 AKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNG 299
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GLS + + LLDL + G A VFS++ + +W +I L ++G +A
Sbjct: 245 LLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEA 304
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L L+ M G P + TF V+ AC +++G E + + G + ++D
Sbjct: 305 LELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVD 364
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDL 161
L + G V + M V+ + V W T++ G L
Sbjct: 365 LLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHL 404
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I YGLS++ + K+L S G D++ VFSQI P +F+WN++IR + + +
Sbjct: 38 ISYGLSHEYSFIFKILSFSALSNSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIH 97
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L ++ M+ +G PD T+PF++KA + G VH +K G D F+Q++L+
Sbjct: 98 SLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIH 157
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CG++ K+F+ M+ +++VSW +M+ G A G++ A
Sbjct: 158 MYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMA 199
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+LD + G+ A VF ++ V +W+ I G +A+ ++ M G + +
Sbjct: 186 MLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKAN 245
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T V+ AC A++KG+ +H + M +Q++L+D+Y KCG ++ +F
Sbjct: 246 EVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFR 305
Query: 139 KMRVRS--VVSWTTMISGLAASG 159
+ V W MI GLA G
Sbjct: 306 GISKSQTDVFIWNAMIGGLATHG 328
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGS 59
Q II L +L L+D+ + G + AL VF I VF WN MI L G
Sbjct: 270 QYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGL 329
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++L L+ M G R D+ T+ ++ AC +++ VK G + +
Sbjct: 330 VEESLKLFKEMQMAGIRSDEITYLCLLAACAHGGLVKEAWNFFESLVKRGMTPTSEHYAC 389
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
++D+ + G + + ++ + S
Sbjct: 390 MVDVLARAGQLTTAYQFICQIPIEPTAS 417
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTF 82
+F G A +F + P +F WN +I+ G AL +++ MIC+G F PDK+TF
Sbjct: 128 AFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTF 187
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
P VIKAC + G +HG A+ +GFS +MFVQ++L+ +Y+ CG V R++F+ M
Sbjct: 188 PLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLK 247
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
RSVVSW TMISG +G + A
Sbjct: 248 RSVVSWNTMISGWFQNGRPEEA 269
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S++ + LL + GK A VF+ + V +WN MI +G +AL ++
Sbjct: 214 GFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVF 273
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N M+ PD T + +C +E G +VH L K + V++ L+D+Y +C
Sbjct: 274 NSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRC 333
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G +D +F + + + V++WT+MI+G +G+ +A
Sbjct: 334 GGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSA 370
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 21 DLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
LC Y K + ++ VF++ WN ++ L + + +A+ L+ M+
Sbjct: 398 SLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEA 457
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF VI A +++ +H V++GF + V + L+D+Y KCG +D K+F
Sbjct: 458 NHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIF 517
Query: 138 DKM--RVRSVVSWTTMISGLAASGDLDAA 164
D++ + + ++ W+ +I+G G + A
Sbjct: 518 DEIPNKEKDIIVWSVLIAGYGMHGHGETA 546
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 1 MQKIIRYGLSNDQLLVRK-LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+ K+++ +++ VR L+D+ S G D A LVF++ + V TW MI ++G+
Sbjct: 307 VHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGN 366
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL L M +G P+ T ++ AC ++
Sbjct: 367 AKSALALCPAMQLDGVVPNAVTLASLLSAC----------------------------AS 398
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
L +Y KC V ++F K + V W ++SGL
Sbjct: 399 LCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGL 434
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
++R G + ++ L+D+ S G D+A +F +I + + W+++I + G
Sbjct: 485 LVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGE 544
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKAC 89
A+LL+N M+ +G +P++ TF V+ AC
Sbjct: 545 TAVLLFNQMVHSGMQPNEITFTSVLHAC 572
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L + L+ KL++ C+ G+ +A VF P VF WN +IR T A+ +Y
Sbjct: 74 LQYNGFLITKLVNCCATLGEIRYARNVFDYYPDPDVFLWNAIIRCYTRQNLFCNAIEMYA 133
Query: 69 LMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M RPD FTFP V+KAC ASLA ++ G+ VHG A + G D+FVQ+ L+ Y KC
Sbjct: 134 RMQIACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQAFRHGLEADVFVQNGLVTFYAKC 193
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +F ++ RS+VSWT++ISG A +G
Sbjct: 194 RKISLANIVFGRLSDRSIVSWTSIISGYAQNG 225
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL + L+ L + + G+ A L F Q+R P++ WN MI +G + +A
Sbjct: 272 VIKMGLEFEIDLLISLTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEA 331
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ MI F PD T VI AC ++E + + ++ F D FV S L+D+
Sbjct: 332 LELFRRMITMNFGPDSITITSVILACAQMGSLELARWMSDYIGRSEFRNDAFVSSALIDM 391
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ KCG VD R +FD+ + VV W++MI G G
Sbjct: 392 FSKCGSVDLARDVFDRALDKDVVLWSSMIMGYGLHG 427
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ R+GL D + L+ + K A +VF ++ + +W +I +G ++
Sbjct: 170 QAFRHGLEADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIE 229
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++N M +PD+ V++A +E GK +HG +K G ++ + +L
Sbjct: 230 ALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLLISLTA 289
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V R FD++R+ +++ W MISG A +G + A
Sbjct: 290 MYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEA 331
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 91/161 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ + D L+ + + S + + D+A+L ++Q+ P+VF +N MI+ +QA
Sbjct: 5 MVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQA 64
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M+ P +TFP +IKAC + + VHG + GF +FVQ++L+D
Sbjct: 65 LELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDF 124
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G ++ ++FD+M R V +WTTM+SGL GD+ +A
Sbjct: 125 YSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSA 165
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 79/137 (57%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ D A L+F+Q+ + +W MI + + +AL ++N M +G PD+ T VI
Sbjct: 192 EVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVIS 251
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
AC A++ GKE+H ++ GF+ D+++ S L+D+Y KCG +D MF K+R +++
Sbjct: 252 ACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFC 311
Query: 148 WTTMISGLAASGDLDAA 164
W ++I GLA G + A
Sbjct: 312 WNSVIEGLAVHGYAEEA 328
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+++G + D + L+D+ + G D +LL+F ++R ++F WN +I L + G + +A
Sbjct: 269 IMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEA 328
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS----- 118
L +++ M +P+ TF V+ AC + IE+G++ A +RD +
Sbjct: 329 LAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRF-----ASMTRDHSIPPGVEHY 383
Query: 119 -TLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
++DL K G ++ ++ M++ + V W ++SG +L+ A
Sbjct: 384 GCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIA 431
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G + + L+D S G+ + ++ VF ++ VF W M+ L G A
Sbjct: 106 VWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSA 165
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+++M PD R++ +TL+D
Sbjct: 166 GRLFDMM------PD---------------------------------RNLATWNTLIDG 186
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y + +VD +F++M R ++SWTTMI+
Sbjct: 187 YARLREVDVAELLFNQMPARDIISWTTMIN 216
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II GL +D L L+++CS + D+A +VF ++ ++ TW+ M+ + G S +
Sbjct: 52 QIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEE 111
Query: 63 ALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL+++ +L +G P++F VI+AC +EKG ++HG V++GF +D++V ++L+
Sbjct: 112 ALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLI 171
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D Y K G+++ R +FD++ ++ V+WTT+I+G G
Sbjct: 172 DFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCG 209
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 80/151 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D + L+D S G + A LVF Q+ TW +I T G S +
Sbjct: 155 VVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVS 214
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M PD++ V+ AC +E GK++H ++ G D+ V + L+D
Sbjct: 215 LELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDF 274
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y KC V GRK+FD+M V++++SWTTMISG
Sbjct: 275 YTKCNRVKAGRKLFDQMVVKNIISWTTMISG 305
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
II++G+S D L+D+ CS+ H VF ++ + WN M T +
Sbjct: 458 IIKFGVSLDLFAGSALIDVYSKCSYVKDARH---VFEEMNEKDIVVWNAMFFGYTQHLEN 514
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL LY+ + + +P++FTF +I A ++ G++ H VK G FV + L
Sbjct: 515 EEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNAL 574
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KCG ++ RKMF+ R VV W +MIS A G+ + A
Sbjct: 575 VDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEA 618
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D +V L+D + + +F Q+ ++ +W MI + +A
Sbjct: 256 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEA 315
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G++PD F V+ +C + A+E+G++VH +KA D FV++ L+D+
Sbjct: 316 MKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDM 375
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K + +K+FD M ++V+S+ MI G ++ L A
Sbjct: 376 YAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEA 416
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ L +D+ + L+D+ Y K++ A VF + +V ++N MI +
Sbjct: 358 IKANLESDEFVKNGLIDM---YAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLS 414
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ M F P TF ++ + A+E K++HGL +K G S D+F S L+
Sbjct: 415 EALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALI 474
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D+Y KC V R +F++M + +V W M G
Sbjct: 475 DVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 507
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
L I N RP + F +++ I+ I K +HG + +G D F+ + L+++ K
Sbjct: 18 LQIPN-LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSD 76
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VD R +FDKM +++++W++M+S + G + A
Sbjct: 77 RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEA 112
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-----------GKTDHALLVFSQIRCPHVFTWNLMIRA 53
+R+G LV+ LD C F G + A +F+ V WN MI
Sbjct: 549 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 608
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAG 109
G + +AL ++ M+ G +P+ TF V+ AC + +E G + G +K G
Sbjct: 609 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPG 668
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ ++ L + G + ++ +KM + + + W +++S +G+++
Sbjct: 669 TEH----YACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 718
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II GL +D L L+++CS + D+A +VF ++ ++ TW+ M+ + G S +
Sbjct: 74 QIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEE 133
Query: 63 ALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL+++ +L +G P++F VI+AC +EKG ++HG V++GF +D++V ++L+
Sbjct: 134 ALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLI 193
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D Y K G+++ R +FD++ ++ V+WTT+I+G G
Sbjct: 194 DFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCG 231
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 80/151 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D + L+D S G + A LVF Q+ TW +I T G S +
Sbjct: 177 VVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVS 236
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M PD++ V+ AC +E GK++H ++ G D+ V + L+D
Sbjct: 237 LELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDF 296
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y KC V GRK+FD+M V++++SWTTMISG
Sbjct: 297 YTKCNRVKAGRKLFDQMVVKNIISWTTMISG 327
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D +V L+D + + +F Q+ ++ +W MI + +A
Sbjct: 278 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEA 337
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G++PD F V+ +C + A+E+G++VH +KA D FV++ L+D+
Sbjct: 338 MKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDM 397
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K + +K+FD M ++V+S+ MI G ++ L A
Sbjct: 398 YAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEA 438
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ L +D+ + L+D+ Y K++ A VF + +V ++N MI +
Sbjct: 380 IKANLESDEFVKNGLIDM---YAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLS 436
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ M +P++FTF +I A ++ G++ H VK G FV + L+
Sbjct: 437 EALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALV 496
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG ++ RKMF+ R VV W +MIS A G+ + A
Sbjct: 497 DMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEA 539
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 52 RALTIDGSSLQALLLYN--LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
+A S LL N L I N RP + F +++ I+ I K +HG + +G
Sbjct: 21 QAFNFSTSVSPQFLLQNPCLQIPN-LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSG 79
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D F+ + L+++ K VD R +FDKM +++++W++M+S + G + A
Sbjct: 80 LQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEA 134
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-----------GKTDHALLVFSQIRCPHVFTWNLMIRA 53
+R+G LV+ LD C F G + A +F+ V WN MI
Sbjct: 470 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 529
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAG 109
G + +AL ++ M+ G +P+ TF V+ AC + +E G + G +K G
Sbjct: 530 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPG 589
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ ++ L + G + ++ +KM + + + W +++S +G+++
Sbjct: 590 TEH----YACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 639
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 9/167 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD-----HALLVFSQIRCPHVFTWNLMIRALTIDG 58
IIR GLS ++ KL+ + + K D + LLVF Q+ P+ F W MIR + G
Sbjct: 65 IIRNGLSQCSYVLTKLIRMLT---KVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQG 121
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQ 117
++ Y M +G P FTF + KAC A+L ++ GK+VH + GF+ D++V
Sbjct: 122 LLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVG 181
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++DLY+KCG + RK+FD+M R VVSWT +I A GD+++A
Sbjct: 182 NSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
YG + A +F + + W M+ +G +AL + M G D+ T V
Sbjct: 222 YGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281
Query: 86 IKACIASLAIEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
I AC A++ + +A ++GF S ++ V S L+D+Y KCG D K+F+ M+ R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341
Query: 144 SVVSWTTMISGLAASGDLDAA 164
+V S+++MI G A G +A
Sbjct: 342 NVFSYSSMILGYAMHGRAHSA 362
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G S + ++ L+D+ S G D A VF ++ +VF+++ MI + G + AL L
Sbjct: 306 FGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQL 365
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
++ M+ RP+K TF ++ AC + +E+G+++
Sbjct: 366 FHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQL 400
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT--DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++R GL D KL C+ + D+A VF QI P+++TWN +IRA +
Sbjct: 53 MLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPI 112
Query: 62 QALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
Q LL++ M+ R P+ +TFPFVIKA ++ G+ +HG+ +KA F D+F+ ++L
Sbjct: 113 QGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSL 172
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y GD+D +F K+ + +VSW +MISG G + A
Sbjct: 173 IHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEA 216
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ +D + L+ S G D A LVFS+I + +WN MI GS +A
Sbjct: 157 VMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEA 216
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M RP++ T V+ AC + +E G+ + G ++ + + ++D+
Sbjct: 217 LQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDM 276
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KCG ++ R++FDKM + +VSWTTMI G A GD DAA
Sbjct: 277 YVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAA 317
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G D A VF + + WN +I + +G +AL ++ L + +P++ T
Sbjct: 312 GDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLAST 371
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A++ G +H K G + + ++L+D+Y KCG ++ ++F + R V
Sbjct: 372 LAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDV 431
Query: 146 VSWTTMISGLAASGDLDAA 164
W+ MI+GLA G AA
Sbjct: 432 FVWSAMIAGLAMHGHGRAA 450
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 77/169 (45%), Gaps = 14/169 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ + + L+D+ S G + AL VF + VF W+ MI L + G A
Sbjct: 391 IKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAA 450
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
+ L++ M +P+ TF ++ AC S +++G + V+G+ +
Sbjct: 451 IDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKH------ 504
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
+ ++D+ + G ++ ++ +KM V S W ++ G+++ A
Sbjct: 505 YACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELA 553
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 9/167 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD-----HALLVFSQIRCPHVFTWNLMIRALTIDG 58
IIR GLS ++ KL+ + + K D + LLVF Q+ P+ F W MIR + G
Sbjct: 65 IIRNGLSQCSYVLTKLIRMLT---KVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQG 121
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQ 117
++ Y M +G P FTF + KAC A+L ++ GK+VH + GF+ D++V
Sbjct: 122 LLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVG 181
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++DLY+KCG + RK+FD+M R VVSWT +I A GD+++A
Sbjct: 182 NSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
YG + A +F + + W M+ +G +AL + M G D+ T V
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281
Query: 86 IKACIASLAIEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
I AC A++ + +A ++GF S ++ V S L+D+Y KCG D K+F+ M+ R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341
Query: 144 SVVSWTTMISGLAASGDLDAA 164
+V S+++MI G A G +A
Sbjct: 342 NVFSYSSMILGYAMHGRAHSA 362
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G S + ++ L+D+ S G D A VF ++ +VF+++ MI + G + AL L
Sbjct: 306 FGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQL 365
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
++ M+ RP+K TF ++ AC + +E+G+++
Sbjct: 366 FHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQL 400
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 5/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ GL D +L+ C S + D+ + R P+ F+WN+ IR +
Sbjct: 72 QMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENP 131
Query: 61 LQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A++LY ++ C+G +PD +T+P + KAC I G E+ G + GF D+FV +
Sbjct: 132 REAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNA 191
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ L + CGD+DG RKMFDK VR +VSW +MI+G G+L++A
Sbjct: 192 VIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYC--GNLESA 234
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F ++ V WN MI +AL L+N M PD+ T +
Sbjct: 260 GLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCL 319
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G +H K S ++ + + L+D+Y KCG + ++F ++ R+ +
Sbjct: 320 SACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSL 379
Query: 147 SWTTMISGLAASGDLDAA 164
+WT +ISGLA G+ A
Sbjct: 380 TWTAIISGLALHGNAHGA 397
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ LS + L L+D+ + GK A+ VF ++ + TW +I L + G++ A
Sbjct: 338 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 397
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMD 122
+ ++ MI N PD+ TF ++ AC +E+G++ ++ K S + S ++D
Sbjct: 398 IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVD 457
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTM 151
L + G ++ ++ M + + V W +
Sbjct: 458 LLGRAGLLEEAEELIKSMPIEADAVVWGAL 487
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I++ GL D L+ C S +G ++A +FSQI P F +N MIR
Sbjct: 54 ILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLE 113
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ALLLY M+ G PD FT+PFV+KAC +A+++G ++H KAG D+FVQ+ L+
Sbjct: 114 EALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLI 173
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+Y KCG ++ +F++M +SV SW+++I A+
Sbjct: 174 SMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHAS 209
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+ + G +HA +VF Q+ V +W+ +I A +
Sbjct: 157 VFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+L M G R ++ + AC + G+ +HG+ ++ ++ V+++L+D
Sbjct: 217 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLID 276
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+KCG ++ G +F M ++ S+T MI+GLA G
Sbjct: 277 MYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHG 313
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G + L VF + + +++ +MI L I G +A+ +++ M+ G PD
Sbjct: 274 LIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPD 333
Query: 79 KFTFPFVIKACIASLAIEKG 98
+ V+ AC + + +G
Sbjct: 334 DVVYVGVLSACSHAGLVNEG 353
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II +GLS +V K++DLC G D+A +F+Q+ P+VF +N +IRA T +
Sbjct: 33 IIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92
Query: 64 LLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y ++ PD+FTFPF+ K+C + + GK+VHG K G + ++ L+D
Sbjct: 93 IRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALID 152
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+K D+ K+FD+M R V+SW +++SG A G + A
Sbjct: 153 MYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKA 194
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+ +W MI T G ++A+ + M G PD+ + V+ +C ++E GK +H
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHM 265
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
A + G + V + L+++Y KCG + ++F++ + + V+SW+TMISG A G+
Sbjct: 266 YAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHR 325
Query: 164 A 164
A
Sbjct: 326 A 326
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + L+++ S G A+ +F Q + V +W+ MI G++ +A
Sbjct: 269 RRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFE 328
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDL 123
+ M +P+ TF ++ AC ++G + + ++ + + ++ L+D+
Sbjct: 329 TFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDM-MRQDYQIEPKIEHYGCLIDV 387
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G ++ ++ M V+ W +++S G+LD A
Sbjct: 388 LARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVA 429
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 9 LSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQALL 65
LS+ + K++ C+ +G ++A VF+QI P++F+WN +I+ + I S + +
Sbjct: 18 LSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIF 77
Query: 66 LYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + G+ P+ FT FV+KAC A +G +VH +K GF +FVQ++L++ Y
Sbjct: 78 LFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFY 137
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC ++ RK+F++M VR++V+WT MISG A G +D A
Sbjct: 138 GKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEA 177
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 21 DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L +FYGK + A VF ++ ++ W MI G+ +A+ L+ M G +P
Sbjct: 132 SLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQP 191
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D T V+ AC + A++ G +H K D+ + + L+D+Y KCG ++ +++F
Sbjct: 192 DAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVF 251
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
M V+ +W++MI G A G
Sbjct: 252 VHMPVKDTTAWSSMIMGFAYHG 273
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +Y + D L L+D+ + G + A VF + W+ MI G + A
Sbjct: 219 IEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDA 278
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M+ PD TF V+ AC + +G+ L ++ G + +DL
Sbjct: 279 IDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDL 338
Query: 124 YLKCGDVDGGRKMFDKMRV-RSVVSWTTMISG 154
+ G V+ ++ M++ + +W +++ G
Sbjct: 339 LCRSGLVEEAYRITTTMKIPPNAATWRSLLMG 370
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Query: 34 LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93
LVF Q+ P+ F W +IR + G ++++LLYN M G P FTF ++KAC A+L
Sbjct: 94 LVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAAL 153
Query: 94 AIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+ G++VH + GF D++V +TL+D+Y+KCG + G ++FD+M R V+SWT++I
Sbjct: 154 DVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLI 213
Query: 153 SGLAASGDLDAA 164
A G+++AA
Sbjct: 214 VAYAKVGNMEAA 225
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 12 DQLLVRKLLDLCSF------YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++L R ++ S G + A +F + + W M+ + +AL
Sbjct: 199 DEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALE 258
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF--SRDMFVQSTLMDL 123
++ M G + D+ T VI AC A + V +A ++GF + ++ V S L+D+
Sbjct: 259 VFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDM 318
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ K+F++M R+V S+++MI G A G AA
Sbjct: 319 YAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAA 359
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G +++ ++ L+D+ + G + A VF ++ +V++++ MI + G + A+ L
Sbjct: 303 FGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMEL 362
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFVQST 119
++ M+ +P++ TF V+ AC + +E+G+ E HG+A S D + +
Sbjct: 363 FDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAP----SEDHY--AC 416
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++DL + G ++ + M + W ++ G+ D A
Sbjct: 417 MVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMA 462
>gi|297735091|emb|CBI17453.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Query: 34 LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93
LVF Q+ P+ F W +IR + G ++++LLYN M G P FTF ++KAC A+L
Sbjct: 94 LVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAAL 153
Query: 94 AIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+ G++VH + GF D++V +TL+D+Y+KCG + G ++FD+M R V+SWT++I
Sbjct: 154 DVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLI 213
Query: 153 SGLAASGDLDAA 164
A G+++AA
Sbjct: 214 VAYAKVGNMEAA 225
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 9 LSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQALL 65
LS+ + K++ C+ +G ++A VF+QI P++F+WN +I+ + I S + +
Sbjct: 18 LSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIF 77
Query: 66 LYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + G+ P+ FT FV+KAC A +G +VH +K GF +FVQ++L++ Y
Sbjct: 78 LFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFY 137
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC ++ RK+F++M VR++V+WT MISG A G +D A
Sbjct: 138 GKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEA 177
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 21 DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L +FYGK + A VF ++ ++ W MI G+ +A+ L+ M G +P
Sbjct: 132 SLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQP 191
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D T V+ AC + A++ G +H K D+ + + L+D+Y KCG ++ +++F
Sbjct: 192 DAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVF 251
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
M V+ +W++MI G A G
Sbjct: 252 VHMPVKDTTAWSSMIMGFAYHG 273
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +Y + D L L+D+ + G + A VF + W+ MI G + A
Sbjct: 219 IEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDA 278
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M+ PD TF V+ AC + +G+ L ++ G + +DL
Sbjct: 279 IDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDL 338
Query: 124 YLKCGDVDGGRKMFDKMRV-RSVVSWTTMISG 154
+ G V+ ++ M++ + +W +++ G
Sbjct: 339 LCRSGLVEEAYRITTTMKIPPNAATWRSLLMG 370
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+++ GL ++ L+ KL++ S G+ +A +F + P VF WN +IR+ + +
Sbjct: 77 NRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYR 136
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ +Y M G PD FTFP+V+KAC L +HG +K GF D+FVQ+ L+
Sbjct: 137 DTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLV 196
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG + + +FD + R++VSWT++ISG A +G
Sbjct: 197 ALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNG 234
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+YG +D + L+ L + G A +VF + + +W +I +G +++
Sbjct: 179 QIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVE 238
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +++ M NG +PD +++A +E+G+ +HG +K G + + +L
Sbjct: 239 ALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTA 298
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V + FD+M+ +V+ W MISG A +G + A
Sbjct: 299 FYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEA 340
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+ GL ++ L L+ L +FY K A F Q++ +V WN MI +G +
Sbjct: 281 VIKMGLEDEPAL---LISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHA 337
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+ L++ MI +PD T + A ++E + + K+ + D+FV ++L
Sbjct: 338 EEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSL 397
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D+Y KCG V+ R++FD+ + VV W+ MI G G
Sbjct: 398 IDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHG 436
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+D + L+D+ + G + A VF + V W+ MI + G +A+ LY++M
Sbjct: 389 SDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVM 448
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
G P+ TF ++ AC S +++G E+
Sbjct: 449 KQAGVFPNDVTFIGLLTACNHSGLVKEGWEL 479
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
N +LL+ C D +A+ VF I P+ WN+M R + + AL
Sbjct: 2 FPNTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALK 61
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY +MI G P+ FTFPF++K+C S ++G+++HG +K GF D++V ++L+ +Y
Sbjct: 62 LYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYA 121
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ G ++ +K+FD+ R VVS+T +I+G A+ G +++A
Sbjct: 122 QNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESA 160
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F +I V +WN MI G+ +AL L+ M+ +PD+ T V+
Sbjct: 155 GYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVV 214
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + + L+DLY KCG+V+ ++ + + + V+
Sbjct: 215 SACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVI 274
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 275 SWNTLIGG 282
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A + + V +WN +I T +ALLL
Sbjct: 236 HGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLL 295
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH--------GLAVKAGFSRDMFVQS 118
+ M+ +G P+ T ++ AC AI+ G+ +H G+ V S +++
Sbjct: 296 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASS----LRT 351
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
+L+D+Y KCGD+D ++ D RS+ +W MI G A G +AA
Sbjct: 352 SLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAA 398
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 3/157 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVF-SQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
++N L L+D+ + G D A V S + TWN MI + G + A ++
Sbjct: 343 VTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIF 402
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M NG PD TF ++ AC S ++ G+ + + + + ++DL
Sbjct: 403 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGH 462
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
G +M + M + V W +++ G+L+
Sbjct: 463 SGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLE 499
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGF 75
+L++ S + + D + + + P V WN MIR T G +AL ++ M G
Sbjct: 37 NQLINAYSLFQRPDLSRKIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGI 96
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PDK+TF F +KAC S+ E+G +H L + GF D+++ + L+++Y K GD+ R+
Sbjct: 97 DPDKYTFTFALKACAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQ 156
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FDKM V+ +V+W TM+SGLA +G
Sbjct: 157 VFDKMPVKDIVTWNTMVSGLAQNG 180
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RC---PHVFTWNLMIRALTID 57
+II++G ++ + L+D+ + K D AL + +C +WN+M+ +
Sbjct: 527 QIIKHGFDSECHVAHALIDM---FTKCD-ALAAAKSLFDKCGFEKSTVSWNIMMNGYLLH 582
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G + +A+ + M F+P+ TF +++A A+ G VH ++ GF V
Sbjct: 583 GQAEEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSLIQFGFCSHTPVG 642
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+D+Y KCG ++ +K F ++R +++VSW TM+S AA G
Sbjct: 643 NSLVDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYAAHG 684
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 80/163 (49%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++ G+ +D + L+++ S G+ + A +F +I+ V +W+ MI + G
Sbjct: 324 EYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHD 383
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L+ M+ F+P+ T V++ C A GK +H A+KA ++ + ++
Sbjct: 384 EALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATAVI 443
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG K F+++ ++ +++ + G GD A
Sbjct: 444 SMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGYTQIGDASKA 486
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF ++ +W M+ A +GS + L L+++M R +K ++A
Sbjct: 253 AECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAY 312
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+EKG +H V+ G D+ V ++L+++Y KCG+++ ++F K++ R VVSW+ M
Sbjct: 313 VGNLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAM 372
Query: 152 ISGLAASGDLDAA 164
I+ +G D A
Sbjct: 373 IASFEQAGQHDEA 385
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G +D + L+++ G A VF ++ + TWN M+ L +G S +A
Sbjct: 126 IAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEA 185
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + D + +I A + + +HGL +K GF+ S L+D+
Sbjct: 186 LRLFRDMHSSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKGFTSAF--SSGLIDM 243
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y KC D+ +F+++ + SW TM++ A +G +
Sbjct: 244 YCKCADLYAAECVFEEVFSKDESSWGTMMAAYAHNGSFE 282
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
C + T L F ++ +N + + T G + +A +Y M +G PD T
Sbjct: 449 CGLFSPT---LKAFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTM 505
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
+++ C +G V+G +K GF + V L+D++ KC + + +FDK
Sbjct: 506 VGMLQTCALCSDYARGSCVYGQIIKHGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGF 565
Query: 143 -RSVVSWTTMISGLAASGDLDAA 164
+S VSW M++G G + A
Sbjct: 566 EKSTVSWNIMMNGYLLHGQAEEA 588
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++G + + L+D+ + G + + F +IR ++ +WN M+ A G + A
Sbjct: 630 LIQFGFCSHTPVGNSLVDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYAAHGLANCA 689
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L+ M N +PD +F V+ AC + E+GK + + + + + ++D
Sbjct: 690 VSLFLSMQENELKPDSVSFLSVLSACRHAGLAEEGKRIFKEMEERHKIEAKVEHYACMVD 749
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMIS 153
L K G D +M +MRV++ V W +++
Sbjct: 750 LLGKSGLFDEAVEMVRRMRVKASVGVWGALLN 781
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R+GL + +L KL + G+ D+++ +F + + P VF W +I + G QA
Sbjct: 53 LFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQA 112
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M+ G P+ FTF ++K C IE GK +H AVK GF D++V++ L+D+
Sbjct: 113 LNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDV 168
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y + GDV +++FD M +S+VS T M++ A G+LDAA
Sbjct: 169 YARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAA 209
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ D A ++F + WN+MI T +G +AL+L+ M+ +P++ T V
Sbjct: 203 HGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 262
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A+E G+ VH G ++ V + L+D+Y KCG ++ R +FDK+ + V
Sbjct: 263 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 322
Query: 146 VSWTTMISGLAASG 159
V+W +MI G A G
Sbjct: 323 VAWNSMIVGYAMHG 336
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G + A LVF +I V WN MI + G S +AL L+ M G P
Sbjct: 297 LVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPT 356
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF ++ AC S + +G ++ + + + G + +++L + G V+ ++
Sbjct: 357 NITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELV 416
Query: 138 DKMRVRS-VVSWTTMISGLAASGDL 161
M + V W T++ G +
Sbjct: 417 KNMNIEPDPVLWGTLLGACRLHGKI 441
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+++ G+ D + L+ C+ +G D+A +F+QI P F +N MIR D
Sbjct: 21 VLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLE 80
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ALLLY MI G PDKFT+PFV+KAC +++G +VHG K G D+ VQ++L+
Sbjct: 81 EALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLI 140
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++Y KCG++ +F+ M +SV SW+ +I A
Sbjct: 141 NMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHA 175
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D ++ L+++ G+ +A VF+ + V +W+ +I A +
Sbjct: 124 VFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNEC 183
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+L M G R ++ T V+ AC + + GK +HG+ ++ ++ V+++L+D
Sbjct: 184 LMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLID 243
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+K G ++ G ++F M ++ S+T MISGLA G
Sbjct: 244 MYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHG 280
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G + L VF + + +++ +MI L I G +AL +++ MI G PD
Sbjct: 241 LIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPD 300
Query: 79 KFTFPFVIKACIASLAIEKG 98
+ V AC + +E+G
Sbjct: 301 DVVYVGVFSACSHAGLVEEG 320
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + +LL+ C D +A+ VF I+ P++ WN M R +
Sbjct: 24 QMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 83
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ A+ LY MI G P+ +TFPF++K+C ++G+++HG +K G+ D++V ++
Sbjct: 84 PVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTS 143
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y+K G K+FD R VVS+T +I+G A+ G +++A
Sbjct: 144 LISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESA 188
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F +I V +WN +I G++ +AL L+ M+ +PD+ T V+
Sbjct: 183 GYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVV 242
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +I+ G++VH G ++ + + L+DLY KCG+V+ +F + + V+
Sbjct: 243 SACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVI 302
Query: 147 SWTTMISG 154
SW TMI G
Sbjct: 303 SWNTMIGG 310
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+GL ++ +V L+DL S G+ + A +F + V +WN MI T +ALLL
Sbjct: 264 HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLL 323
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AI+ G+ +H K G + ++++L+D+Y
Sbjct: 324 FQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMY 383
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ M R++ + MI G A G +AA
Sbjct: 384 AKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAA 423
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF+ + + N MI + G + A ++
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIF 427
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M NG PD TF ++ AC S ++ G+ + + + + ++DL
Sbjct: 428 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGH 487
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
G +M + M + V W +++ G+++
Sbjct: 488 LGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVE 524
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 3/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ GL D +L+ C S + D+ + R P+ F+WN+ IR +
Sbjct: 28 QMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENP 87
Query: 61 LQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A++LY ++ C+G +PD +T+P + KAC I G E+ G + GF D+FV +
Sbjct: 88 REAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNA 147
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ L + CGD+DG RKMFDK VR +VSW +MI+G G
Sbjct: 148 VIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 187
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G +D + ++ L G D A +F + + +WN MI G + +A
Sbjct: 133 VLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M G +PD+ T V+ +C ++ G+E H + G + + + LMD+
Sbjct: 193 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDM 252
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KCG+++ RK+FD M +++VSWTTM+ G A SG LD A
Sbjct: 253 YMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMA 293
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F ++ V WN MI +AL L+N M PD+ T +
Sbjct: 288 GLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCL 347
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G +H K S ++ + + L+D+Y KCG + ++F ++ R+ +
Sbjct: 348 SACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSL 407
Query: 147 SWTTMISGLAASGDLDAA 164
+WT +ISGLA G+ A
Sbjct: 408 TWTAIISGLALHGNAHGA 425
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ LS + L L+D+ + GK A+ VF ++ + TW +I L + G++ A
Sbjct: 366 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 425
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMD 122
+ ++ MI N PD+ TF ++ AC +E+G++ ++ K S + S ++D
Sbjct: 426 IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVD 485
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
L + G ++ ++ M + + V W + G++
Sbjct: 486 LLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNV 525
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 5 IRYG-LSNDQLLVRKLL-DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
IR+G L N+ + + L+ + S +A +F+ I+ P++FTWN MIR +
Sbjct: 64 IRHGVLPNNPDMGKHLIYSIVSVSAPMTYAHNIFTLIQNPNIFTWNTMIRGHAESENPKP 123
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY+ + N PD T+PF++KA + + G+++H ++++ GF +FVQ++LM
Sbjct: 124 AIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRVGEKIHSISIRNGFESLVFVQNSLMH 183
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CG + K+F+ M R +V+W T ISG A +G + A
Sbjct: 184 MYAACGQYESAHKLFEFMPDRDLVAWNTAISGFALNGKPNEA 225
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + L+ + + G+ + A +F + + WN I ++G +AL
Sbjct: 167 IRNGFESLVFVQNSLMHMYAACGQYESAHKLFEFMPDRDLVAWNTAISGFALNGKPNEAL 226
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY M G PD FT ++ AC A+ G+ +H VK G ++ ++L+DLY
Sbjct: 227 KLYMEMGLEGVEPDGFTLVSLLSACAELGALALGRRIHAYMVKVGLDENLHANNSLIDLY 286
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG + +++FD+M +R+VVSWT++I GLA +G
Sbjct: 287 AKCGRIRDAQQVFDEMELRNVVSWTSLIVGLAVNG 321
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLL-DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ G + LL KL+ C D+A +F Q+ VF WN +IR G +
Sbjct: 52 VVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEE 111
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY+ M G PD +TFPFV+++C A+ +GKEVH VK GF D+FVQS+L+
Sbjct: 112 ALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVA 171
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y + G+ G +F +M VR++VSWT +I+G
Sbjct: 172 MYSQSGETLGMELVFGEMVVRNIVSWTAVIAG 203
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+ D L L+ L G + A +F + ++ +WN MI A + + A+
Sbjct: 256 IKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAV 315
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M D T VI AC + A+ G+ +H L + G ++ + + L+D+Y
Sbjct: 316 KLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMY 375
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG++D R++F+++ RSVVSWT+MI A+ G + A
Sbjct: 376 AKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDA 415
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I+++G +D + L+ + S G+T LVF ++ ++ +W +I + +
Sbjct: 153 NIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKE 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L ++ M+ +G +P+ T V+ AC + GK +HG +K G D+ + + L+
Sbjct: 213 GLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIA 272
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
LY KCG+V+ R +FD M V+++VSW MI+
Sbjct: 273 LYGKCGNVETARSLFDGMVVQNLVSWNAMIAA 304
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R GL + + L+D+ + G D A VF ++ C V +W MI A G A
Sbjct: 356 VKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDA 415
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
L L++ M G +P+ FTF V AC S +E+G++ H ++ +S V+ + ++
Sbjct: 416 LKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRK-HFESMMRDYSIMPGVEHCACMV 474
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + G + + DKM V VS W ++ +L+ A
Sbjct: 475 DLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELA 518
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC---GDVDGGRKMF 137
+F +++ C + + + +H L V G +++ + + L + C +D RKMF
Sbjct: 31 SFNYLLNCCSSLPDLSR---IHALVVTNGCGQNLLLSTKL--IITACCLAPTMDYARKMF 85
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D+M R V W T+I G A +G + A
Sbjct: 86 DQMPKRDVFLWNTLIRGYADAGPCEEA 112
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I GLS D + K+L S G +++ VFSQ+ P +F+WN +IR + + +
Sbjct: 37 VISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPI 96
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
Q+L ++ M+ G PD T+PF++KA L E G VH +K G D F+Q++L+
Sbjct: 97 QSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLI 156
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y CG+ +K+FD ++ ++VVSW +M+ G A G++
Sbjct: 157 HMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEM 196
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM------------- 50
II+ G +D+ + L+ + + G + A VF I+ +V +WN M
Sbjct: 140 IIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMA 199
Query: 51 -----------IRALT--IDG-----SSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
+R+ + IDG +A+ ++ M G + ++ T V AC
Sbjct: 200 QKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHM 259
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS--VVSWTT 150
A+EKG+ ++ V G + +Q++L+D+Y KCG ++ +F ++ V+ W
Sbjct: 260 GALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNA 319
Query: 151 MISGLAASG 159
+I GLA G
Sbjct: 320 VIGGLATHG 328
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSSL 61
I+ GL +L L+D+ + G + ALL+F ++ V WN +I L G
Sbjct: 272 IVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVE 331
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKAC 89
++L L+ M G PD+ T+ ++ AC
Sbjct: 332 ESLKLFKEMQIVGICPDEVTYLCLLAAC 359
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLL-DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ G + LL KL+ C D+A +F Q+ VF WN +IR G +
Sbjct: 52 VVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEE 111
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY+ M G PD +TFPFV+++C A+ +GKEVH VK GF D+FVQS+L+
Sbjct: 112 ALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVA 171
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y + G+ G +F +M VR++VSWT +I+G
Sbjct: 172 MYSQSGETLGMELVFGEMVVRNIVSWTAVIAG 203
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I+++G +D + L+ + S G+T LVF ++ ++ +W +I + +
Sbjct: 153 NIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKE 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L ++ M+ +G +P+ T V+ AC + GK +HG +K G D+ + + L+
Sbjct: 213 GLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIA 272
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
LY KCG+V+ R +FD M V+++VSW MI+
Sbjct: 273 LYGKCGNVETARSLFDGMVVQNLVSWNAMIAA 304
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ C V +W MI A G AL L++ M G +P+ FTF V AC S
Sbjct: 345 VFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGL 404
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTM 151
+E+G++ H ++ +S V+ + ++DL + G + + DKM V VS W +
Sbjct: 405 VEEGRK-HFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGAL 463
Query: 152 ISGLAASGDLDAA 164
+ +L+ A
Sbjct: 464 LGSCRIHSNLELA 476
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC---GDVDGGRKMF 137
+F +++ C + + + +H L V G +++ + + L + C +D RKMF
Sbjct: 31 SFNYLLNCCSSLPDLSR---IHALVVTNGCGQNLLLSTKL--IITACCLAPTMDYARKMF 85
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D+M R V W T+I G A +G + A
Sbjct: 86 DQMPKRDVFLWNTLIRGYADAGPCEEA 112
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I++ GL D L+ C S +G ++A +F QI P F +N MIR +
Sbjct: 53 ILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLE 112
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ALLLY M+ G PD FT+PFV+KAC A+++G ++H KAG D+FVQ+ L+
Sbjct: 113 EALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLI 172
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
++Y KCG ++ +F++M +SV SW+++I A+
Sbjct: 173 NMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHAS 208
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+++ G +HA +VF Q+ V +W+ +I A +
Sbjct: 156 VFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHEC 215
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+L M G R ++ + AC + G+ +HG+ ++ ++ V+++L+D
Sbjct: 216 LMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLID 275
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+K G ++ G +F M ++ S+T +I+GLA G
Sbjct: 276 MYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHG 312
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G + L VF + + +++ ++I L I G +AL +++ M+ G PD
Sbjct: 273 LIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPD 332
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ V+ AC + + +G + + L + + ++DL + G + G +
Sbjct: 333 DVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLI 392
Query: 138 DKMRVR-SVVSWTTMISGLAASGDLD 162
M ++ + V W +++S +L+
Sbjct: 393 KSMPIKPNDVVWRSLLSACKVHHNLE 418
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++ GL N ++ +LL+ C S G HA +F I+ P + +N MI+AL + G
Sbjct: 27 QVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEF 86
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L A+ +++ + NG PD +T P+V+KA I G+ +H +K G + + FV ++L
Sbjct: 87 LNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSL 146
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y ++ R++FD+M S VSWT MI G A GD+D A
Sbjct: 147 LVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTA 190
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F W MI + + L ++ LM PD+ ++
Sbjct: 185 GDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTIL 244
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G +H + G + V + L+D+Y KCG +D + +F++M R V
Sbjct: 245 SACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNV 304
Query: 147 SWTTMISGLAASGDLDAA 164
W MISG+A GD + A
Sbjct: 305 CWNAMISGMAMDGDGEGA 322
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + L+D+ + G D A +F+++ WN MI + +DG A+
Sbjct: 265 RLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIK 324
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L+ M G +PD TF V+ AC S +++G
Sbjct: 325 LFMEMEKAGIKPDNITFIAVLAACSNSGMVDEG 357
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 90/157 (57%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K++ GL L+ KL++ S G+ A +F + P VF WN ++R + G
Sbjct: 97 KLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGH 156
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ +Y M PD F+FP V+KAC A A+E G+ VHG + GF D+FVQ+ L+
Sbjct: 157 AIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVA 216
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG++ +F ++ R++VSWT++ISG A +G
Sbjct: 217 LYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNG 253
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 19 LLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
L+ L S Y K H A L F+Q+ P + WN MI +G + +A+ L+ LM
Sbjct: 312 LISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNI 371
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
RPD T I AC ++E + + + F D+ V ++L+D Y KCG VD R
Sbjct: 372 RPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARF 431
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD++ + VV W+ M+ G G
Sbjct: 432 VFDRIPDKDVVVWSAMMVGYGLHG 455
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R+G +D + L+ L + G+ A VF ++ + +W +I +G ++
Sbjct: 198 QIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIE 257
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +++ M RPD V++A +E GK +HG +K G + + +L
Sbjct: 258 ALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTS 317
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG V R F+++ S++ W MISG +G + A
Sbjct: 318 LYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEA 359
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND ++ L+D + G D A VF +I V W+ M+ + G ++++L++ M
Sbjct: 408 NDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAM 467
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G P+ TF ++ AC S +E+G ++ G + ++DL + G +
Sbjct: 468 RQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHL 527
Query: 131 DGGRKMFDKMRVRSVVS-WTTMISG 154
D M + VS W ++S
Sbjct: 528 DRAYNFVMNMPIEPGVSVWGALLSA 552
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++ GL N ++ +LL+ C S G HA +F I+ P + +N MI+AL + G
Sbjct: 27 QVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEF 86
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L A+ +++ + NG PD +T P+V+KA I G+ +H +K G + + FV ++L
Sbjct: 87 LNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSL 146
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y ++ R++FD+M S VSWT MI G A GD+D A
Sbjct: 147 LVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTA 190
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F W MI + + L ++ LM PD+ ++
Sbjct: 185 GDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTIL 244
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G +H + G + V + L+D+Y KCG +D + +F++M R V
Sbjct: 245 SACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNV 304
Query: 147 SWTTMISGLAASGDLDAA 164
W MISG+A GD + A
Sbjct: 305 CWNAMISGMAMDGDGEGA 322
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + L+D+ + G D A +F+++ WN MI + +DG A+
Sbjct: 265 RLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIK 324
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L+ M G +PD TF V AC S +++G
Sbjct: 325 LFMEMEKAGIKPDNITFIAVWXACSNSGMVDEG 357
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 95/161 (59%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D + L+++ + G T A +F +R V++WNL++ G +A
Sbjct: 136 IKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M+ + +PDK TF ++ AC + ++KG+E++ L +KAG+ D+FV + L+++
Sbjct: 196 FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINM 255
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++KCGD+ K+FD + R +V+WT+MI+GLA G A
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D + L+++ G A VF + + TW MI L G QA
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G +PDK F +++AC A+E+GK+VH + G+ +++V + ++ +
Sbjct: 297 CNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSM 356
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ ++FD ++ R+VVSWT MI+G A G +D A
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G +D + LL + + G A VF +I +V WN MI A A
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + ++ G +P+ TF ++ C +S ++E GK VH L +KAG D+ V + L+ +
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSM 558
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ CGD+ + +F+ M R +VSW T+I+G G
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG 594
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL +D + L+ + G A +F+ + + +WN +I G + A
Sbjct: 540 IMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVA 599
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +M +G +PDK TF ++ AC + A+ +G+ +H L +A F D+ V + L+ +
Sbjct: 600 FDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISM 659
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ ++F K+ ++V SWT+MI+G A G
Sbjct: 660 YTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHG 695
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 80/146 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+L + + G + AL VF ++ +V +W MI G +A L +N MI +G P+
Sbjct: 353 ILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPN 412
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ TF ++ AC + A+++G+++ ++AG+ D V++ L+ +Y KCG + ++F+
Sbjct: 413 RVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFE 472
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
K+ ++VV+W MI+ D A
Sbjct: 473 KISKQNVVAWNAMITAYVQHEQYDNA 498
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 62/117 (52%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N ++ L+ G +A+ + + + + + T+ +++ CI + G+ ++ K
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+G D+F+++TL+++Y KCG+ +++FD MR + V SW ++ G G + A
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L+ L+ + + G + A VF ++ +V++W MI G +AL L+ M
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQ 708
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQSTLMDLYLKCGD 129
G +PD TF + AC + IE+G +H F+ + M ++DL+ + G
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGL 766
Query: 130 VDGGRKMFDKMRVR 143
++ + KM+V
Sbjct: 767 LNEAVEFIIKMQVE 780
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++++ GL N + KLL+LC D +A+ VF + P++ WN M+R L
Sbjct: 4 QMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSD 63
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ L +Y M+ G P+ +TFPF++K+C S E+G+++H +K G D + ++
Sbjct: 64 LVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTS 123
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y + G ++ RK+FD R VVS T +I+G A+ GD+ +A
Sbjct: 124 LISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSA 168
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+G + +V + L S G + A +F + C V +WN +I T +ALL
Sbjct: 244 HHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALL 303
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDL 123
L+ M+ +G P+ T V+ AC AI+ G+ +H K G + ++++L+D+
Sbjct: 304 LFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDM 363
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD++ ++F+ M +S+ SW MI G A G +AA
Sbjct: 364 YAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAA 404
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF I V +WN MI + +AL L+ M+ RPD+ T V+
Sbjct: 163 GDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVL 222
Query: 87 KACIASLAIEKGKEVHGLA-VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC S +IE G+E+H L GF + + + + LY KCGDV+ +F+ + + V
Sbjct: 223 SACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDV 282
Query: 146 VSWTTMISG 154
VSW T+I G
Sbjct: 283 VSWNTLIGG 291
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF+ + + +WN MI + G + A L+
Sbjct: 349 GVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLF 408
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M NG PD T ++ AC S ++ G+ +
Sbjct: 409 SRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHI 442
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++R +S L +++ LC+ + + HA VF+Q+R P++ N MI+A +
Sbjct: 36 HVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRD 95
Query: 63 ALLLYNLMI-CNGFRPD------KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
A+ +Y M+ C PD +FT+PF++KAC + A+E GK+VH V++G
Sbjct: 96 AVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAI 155
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VQ++L+++Y + GD+ K+FD+MR R VVSW +IS A G + A
Sbjct: 156 VQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKA 204
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F+ + + TW M+ T G A+ + M GF PD + V+
Sbjct: 199 GQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVL 258
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ ++ + G + + LM++Y KCG +D ++FD M + V+
Sbjct: 259 PACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVI 318
Query: 147 SWTTMISGLAASG 159
SW+T+I GLAA G
Sbjct: 319 SWSTVIGGLAAHG 331
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+G+ + L+++ + G D AL +F + V +W+ +I L G + +A+
Sbjct: 279 RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVW 338
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQ 117
L+ M G RP+ TF ++ AC + +++G +V+G V+ G
Sbjct: 339 LFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYG--VEPGVEH----Y 392
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS----WTTMISGLAASGDLDAA 164
++DL + G + R+ D +R V + W +++S + GD+D A
Sbjct: 393 GCVVDLLGRSGQI---RRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTA 440
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 95/161 (59%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D + L+++ + G T A +F +R V++WNL++ G +A
Sbjct: 136 IKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M+ + +PDK TF ++ AC + ++KG+E++ L +KAG+ D+FV + L+++
Sbjct: 196 FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINM 255
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++KCGD+ K+FD + R +V+WT+MI+GLA G A
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D + L+++ G A VF + + TW MI L G QA
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G +PDK F +++AC A+E+GK+VH + G+ +++V + ++ +
Sbjct: 297 CNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSM 356
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ ++FD ++ R+VVSWT MI+G A G +D A
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G +D + LL + + G A VF +I +V WN MI A A
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + ++ G +P+ TF ++ C +S ++E GK VH L +KAG D+ V + L+ +
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSM 558
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ CGD+ + +F+ M R +VSW T+I+G G
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG 594
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL +D + L+ + G A +F+ + + +WN +I G + A
Sbjct: 540 IMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVA 599
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +M +G +PDK TF ++ AC + A+ +G+ +H L +A F D+ V + L+ +
Sbjct: 600 FDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISM 659
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ ++F K+ ++V SWT+MI+G A G
Sbjct: 660 YTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHG 695
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 80/146 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+L + + G + AL VF ++ +V +W MI G +A L +N MI +G P+
Sbjct: 353 ILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPN 412
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ TF ++ AC + A+++G+++ ++AG+ D V++ L+ +Y KCG + ++F+
Sbjct: 413 RVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFE 472
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
K+ ++VV+W MI+ D A
Sbjct: 473 KISKQNVVAWNAMITAYVQHEQYDNA 498
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 61/117 (52%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N ++ L+ G +A+ + + + + + T+ +++ CI + G+ ++ K
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+G D+F+ +TL+++Y KCG+ +++FD MR + V SW ++ G G + A
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L+ L+ + + G + A VF ++ +V++W MI G +AL L+ M
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQ 708
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQSTLMDLYLKCGD 129
G +PD TF + AC + IE+G +H F+ + M ++DL+ + G
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGL 766
Query: 130 VDGGRKMFDKMRVR 143
++ + KM+V
Sbjct: 767 LNEAVEFIIKMQVE 780
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 8 GLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL D +L+ C S + D+ + R P+ F+WN+ IR + +A++
Sbjct: 5 GLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVV 64
Query: 66 LYN-LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY ++ C+G +PD +T+P + KAC I G E+ G + GF D+FV + ++ L
Sbjct: 65 LYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLL 124
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ CGD+DG RKMFDK VR +VSW +MI+G G
Sbjct: 125 VSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 159
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G +D + ++ L G D A +F + + +WN MI G + +A
Sbjct: 105 VLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEA 164
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M G +PD+ T V+ +C ++ G+E H + G + + + LMD+
Sbjct: 165 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDM 224
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
Y+KCG+++ RK+FD M +++VSWTTM+
Sbjct: 225 YMKCGNLESARKLFDSMTNKTMVSWTTML 253
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76
RKL D + ++F ++ V WN MI +AL L+N M
Sbjct: 235 RKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNIN 294
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD+ T + AC A++ G +H K S ++ + + L+D+Y KCG + ++
Sbjct: 295 PDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQV 354
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F ++ R+ ++WT +ISGLA G+ A
Sbjct: 355 FQELPGRNSLTWTAIISGLALHGNAHGA 382
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ LS + L L+D+ + GK A+ VF ++ + TW +I L + G++ A
Sbjct: 323 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMD 122
+ ++ MI N PD+ TF ++ AC +E+G++ ++ K S + S ++D
Sbjct: 383 IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVD 442
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
L + G ++ ++ M + + V W + G++
Sbjct: 443 LLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNV 482
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL D L+ LL + T +A +VF+Q P++F +N +IR + + + A
Sbjct: 26 LLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDA 85
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIA-SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y M +GF PD FTFPFV+KAC G +H L +K GF D+FV++ L+
Sbjct: 86 VSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVC 145
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY K G + RK+FD++ ++VVSWT +I G SG
Sbjct: 146 LYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D + L+ L S G A VF +I +V +W +I G +A
Sbjct: 128 VIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEA 187
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ ++ G RPD FT ++ AC + G+ + G ++G ++FV ++L+D+
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDM 247
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ R++FD M + VV W+ +I G A++G
Sbjct: 248 YAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNG 283
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + + L+D+ + G + A VF + V W+ +I+ +G +AL ++
Sbjct: 233 GSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVF 292
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M RPD + V AC A+E G GL F + + + L+D Y KC
Sbjct: 293 FEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKC 352
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G V +++F MR + V + +ISGLA G + AA
Sbjct: 353 GSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAA 389
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++R +S L +++ LC+ + + HA VF+Q+R P++ N MI+A +
Sbjct: 36 HVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRD 95
Query: 63 ALLLYNLMI-CNGFRPD------KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
A+ +Y M+ C PD +FT+PF++KAC + A+E GK+VH V++G
Sbjct: 96 AVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAI 155
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VQ++L+++Y + GD+ K+FD+MR R VVSW +IS A G + A
Sbjct: 156 VQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKA 204
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F+ + + TW M+ T G A+ + M GF PD + V+
Sbjct: 199 GQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVL 258
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ ++ + G + + LM++Y KCG +D ++FD M + V+
Sbjct: 259 PACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVI 318
Query: 147 SWTTMISGLAASG 159
SW+T+I GLAA G
Sbjct: 319 SWSTVIGGLAAHG 331
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+G+ + L+++ + G D AL +F + V +W+ +I L G + +A+
Sbjct: 279 RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVW 338
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQ 117
L+ M G RP+ TF ++ AC + +++G +V+G V+ G
Sbjct: 339 LFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYG--VEPGVEH----Y 392
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS----WTTMISGLAASGDLDAA 164
++DL + G + R+ D +R V + W +++S + GD+D A
Sbjct: 393 GCVVDLLGRSGQI---RRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTA 440
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++R +S L +++ LC+ + + HA VF+Q+R P++ N MI+A +
Sbjct: 36 HVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRD 95
Query: 63 ALLLYNLMI-CNGFRPD------KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
A+ +Y M+ C PD +FT+PF++KAC + A+E GK+VH V++G
Sbjct: 96 AVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAI 155
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VQ++L+++Y + GD+ K+FD+MR R VVSW +IS A G + A
Sbjct: 156 VQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKA 204
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F+ + + TW M+ T G A+ + M GF PD + V+
Sbjct: 199 GQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVL 258
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC +E G+ ++ + G + + LM++Y KCG +D ++FD M + V+
Sbjct: 259 PACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVI 318
Query: 147 SWTTMISGLAASG 159
SW+T+I GLAA G
Sbjct: 319 SWSTVIGGLAAHG 331
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+G+ + L+++ + G D AL +F + V +W+ +I L G + +A+
Sbjct: 279 RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVW 338
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQ 117
L+ M G RP+ TF ++ AC + +++G +V+G V+ G
Sbjct: 339 LFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYG--VEPGVEH----Y 392
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS----WTTMISGLAASGDLDAA 164
++DL + G + R+ D +R V + W +++S + GD+D A
Sbjct: 393 GCVVDLLGRSGQI---RRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTA 440
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 98/160 (61%), Gaps = 4/160 (2%)
Query: 9 LSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRA-LTIDGSSLQALL 65
+S+ L+ K+L + +G D+A +FSQI P +F +N +IR L S + +
Sbjct: 18 ISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIH 77
Query: 66 LYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ G+ P+ FT FV+KAC +A+E+GK++H +++GFS +VQS+L++ Y
Sbjct: 78 LFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFY 137
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC ++ RK+FD++ R++V W+ M+SG A G ++ A
Sbjct: 138 SKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEA 177
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+I+R G S+ + L++ FY K + A VF +I ++ W+ M+ G
Sbjct: 117 QILRSGFSSSPYVQSSLVN---FYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGM 173
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL+++ M G PD+ + V+ AC A++ GK VH K D+ + +
Sbjct: 174 INEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTA 233
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y KCG ++ R++FD+MRV+ +W++MI GLA G
Sbjct: 234 LINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHG 273
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+++ + G + A +F ++R W+ MI L I G + AL +++ M
Sbjct: 227 DLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRME 286
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+P+ TF ++ AC + GK ++ G M ++DL + G +D
Sbjct: 287 EAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLID 346
Query: 132 GGRKMFDKMRVRSVVSWTTMI 152
+ V W T++
Sbjct: 347 EAYDFALIIPTPDPVIWRTLL 367
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GF 75
+L++ S + + D + ++F +R P V WN MIR T G +AL + M G
Sbjct: 37 NQLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGI 96
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PDK++F F +KAC S+ +KG +H L + G D+++ + L+++Y K D+ R+
Sbjct: 97 DPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQ 156
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FDKM V+ VV+W TM+SGLA +G AA
Sbjct: 157 VFDKMHVKDVVTWNTMVSGLAQNGCSSAA 185
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGS 59
+II++G ++ + L+++ + A+++F +C +WN+M+ + G
Sbjct: 527 QIIKHGFDSECHVAHALINMFTKCDALAAAIVLFD--KCGFEKSTVSWNIMMNGYLLHGQ 584
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ +A+ + M F+P+ TF +++A A+ G VH ++ GF V ++
Sbjct: 585 AEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNS 644
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG ++ K F ++ + +VSW TM+S AA G
Sbjct: 645 LVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHG 684
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL D + L+ + S G+ + A +F I V +W+ MI + G +A+
Sbjct: 327 VQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAI 386
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ +P+ T V++ C A GK +H A+KA ++ + ++ +Y
Sbjct: 387 SLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMY 446
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG K F+++ ++ V++ + G GD + A
Sbjct: 447 AKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKA 486
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ +W M+ A +G + L L++LM R +K ++A
Sbjct: 256 VFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGD 315
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ KG +H AV+ G D+ V ++LM +Y KCG+++ ++F + R VVSW+ MI+
Sbjct: 316 LVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIAS 375
Query: 155 LAASGDLDAA 164
+G D A
Sbjct: 376 YEQAGQHDEA 385
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I GL +D + L+++ A VF ++ V TWN M+ L +G S A
Sbjct: 126 IAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAA 185
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV-QSTLMD 122
LLL++ M D + +I A + + +HGL +K GF +F S L+D
Sbjct: 186 LLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGF---IFAFSSGLID 242
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y C D+ +F+++ + SW TM++ A +G
Sbjct: 243 MYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNG 279
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ AL F ++ +N + + T G + +A +Y M +G PD T ++
Sbjct: 450 GRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGML 509
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-RSV 145
+ C +G V+G +K GF + V L++++ KC + +FDK +S
Sbjct: 510 QTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKST 569
Query: 146 VSWTTMISGLAASGDLDAA 164
VSW M++G G + A
Sbjct: 570 VSWNIMMNGYLLHGQAEEA 588
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+D+ + G + + F +I ++ +WN M+ A G + A
Sbjct: 630 LIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCA 689
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L+ M N +PD +F V+ AC + +E+GK + + + ++ + ++D
Sbjct: 690 VSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVD 749
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMIS 153
L K G +M +MRV++ V W +++
Sbjct: 750 LLGKAGLFGEAVEMMRRMRVKTSVGVWGALLN 781
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A +F I+ P + +WNL+I+ + S A+ L+ ++C+ F PD FT P V+K C
Sbjct: 67 YAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCD-FVPDSFTLPCVLKGCA 125
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
A+++GK++HGL +K GF D FV S+L+ +Y KCG+++ RK+FD+M + VVSW +
Sbjct: 126 RLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNS 185
Query: 151 MISGLAASGDLDAA 164
+I G A G+++ A
Sbjct: 186 LIDGYARCGEIELA 199
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++ A +F Q+ + TWN MI + +AL L+ +M+ P+ T +
Sbjct: 256 GDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAV 315
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A +++ G+ VH VK+GF D + + L+++Y KCG V ++F + + +
Sbjct: 316 SAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLG 375
Query: 147 SWTTMISGLAASG 159
WT++I GL G
Sbjct: 376 HWTSVIVGLGMHG 388
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D +L L+++ S G AL VF I + W +I L + G Q
Sbjct: 334 IVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQT 393
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M G +P TF V+ AC A A + + + G + L+D
Sbjct: 394 LELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLID 453
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
+ + G ++ + ++M +++ V WT+++SG G++
Sbjct: 454 VLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNI 493
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D+ ++ L+ + S G+ + VF ++ V +WN +I G A
Sbjct: 140 VLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELA 199
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMD 122
L ++ M D F++ +I S +E ++V + ++ S + +
Sbjct: 200 LEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMING---- 251
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y+K GD + +++FD+M RS+V+W +MI+G
Sbjct: 252 -YMKAGDSNTAKELFDQMPERSLVTWNSMITG 282
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++ + G + L + +LL S Y ++A +F+ + P+ F +N+MIR
Sbjct: 47 RLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRGYAQREKP 106
Query: 61 LQALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
AL L+ M+CN +K TFPFV+KAC AIE+GK+VHGL K G S D+FVQ++
Sbjct: 107 ENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNS 166
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+ +Y CG + ++F+K+ VVSW +MISGL G
Sbjct: 167 LISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDLG 206
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-------- 55
+ ++GLS D + L+ + S G A VF++I P V +WN MI L
Sbjct: 152 VFKHGLSEDLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEG 211
Query: 56 ---IDGSSLQALLLYNLMICNG-------------FRPDKFTFPFVIKACIASLAIEKGK 99
D S ++L+ +N +I +G F +FT V+ AC A+E+G+
Sbjct: 212 KQMFDRMSKRSLVTWNCLI-DGYVKAGLLMEARELFDQMRFTMVSVLTACSYLGALEQGE 270
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ K G + + + L++++ KCG ++ +F + R V +W ++I LAA G
Sbjct: 271 WMQAHIEKNGIDVNSVLGTALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHG 330
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++I+ + + L K L LC+ G +A VF+ I P+ F WN +IRA +
Sbjct: 10 QMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEP 69
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A L Y M+ + + +TFPF+++AC LA+ + +VHGL +K GF D+F + L
Sbjct: 70 ELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNAL 129
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y CG++ R++FD + R VSW MI G SGD+ A
Sbjct: 130 LHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTA 173
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + +V +W +I L G S++AL L M GF D ++
Sbjct: 168 GDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLL 227
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS 144
AC A+++G+ +H + G D + L+++Y+KCGD++ +F K++ +
Sbjct: 228 TACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKD 287
Query: 145 VVSWTTMISGLAASG 159
V WT MI G A G
Sbjct: 288 VYIWTAMIDGFAIHG 302
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSSL 61
++ G+ D+++ L+++ G + AL VF +++ V+ W MI I G +
Sbjct: 246 VLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGV 305
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--ST 119
+AL +N M G RP+ TF V++AC +E+GKE+ ++K ++ + ++
Sbjct: 306 EALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFK-SMKCFYNVNPSIEHYGC 364
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMI 152
++DL + G +D +++ KM ++ S V W ++
Sbjct: 365 MVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALL 398
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 52/207 (25%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGK-TDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQ 62
I+ G D L +++ C+F + D+A VF Q+ P+ F WN ++R L + LQ
Sbjct: 43 IKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQ 102
Query: 63 --ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
AL+L++ M+C+G +P++FTFP V+KAC + + +GK++HGL VK GF D FV S
Sbjct: 103 SEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISN 162
Query: 120 LMDLYLKC-----------------------------------------------GDVDG 132
L+ +Y+ C GD+
Sbjct: 163 LVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKS 222
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +FD+M RSVVSW MISG A +G
Sbjct: 223 AKNLFDEMPQRSVVSWNVMISGYAQNG 249
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ V +WN+MI +G ++A+ L+ M + P+ T V+
Sbjct: 218 GDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A A+E GK +H A K D + S L+D+Y KCG +D ++F+ + R+ +
Sbjct: 278 PAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAI 337
Query: 147 SWTTMISGLAASGDLDAA 164
+W+ +I A G + A
Sbjct: 338 TWSAIIGAFAMHGRAEDA 355
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 2/152 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ S G D AL VF + + TW+ +I A + G + A++ ++LM
Sbjct: 304 DDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMG 363
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDV 130
G P+ + ++ AC + +E+G+ VK G + ++DL + G +
Sbjct: 364 KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHL 423
Query: 131 DGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
+ ++ M + V W ++ +L
Sbjct: 424 EEAEELIRNMPIEPDDVIWKALLGACKMHKNL 455
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + D + +LD+ G+ + A VFS+I P W MI +G A
Sbjct: 1164 VVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHA 1223
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y+ M + +PD++TF ++KAC A+E+G+++H VK + D FV ++L+D+
Sbjct: 1224 LFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDM 1283
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+++ R +F + R + SW MI GLA G+ A
Sbjct: 1284 YAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEA 1324
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 91/160 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ D + L+D+ S GK + A +F + +WN ++ + G +AL
Sbjct: 1064 MKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKAL 1123
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY LM +G R D+ T KA + +++GK++H + VK GF+ D+FV S ++D+Y
Sbjct: 1124 RLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMY 1183
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LKCG+++ R++F ++ V+WTTMISG +G + A
Sbjct: 1184 LKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHA 1223
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL + L+++ G A VF Q+ + +WN MI T+ G +
Sbjct: 961 VMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECS 1020
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAGFSRDMFVQST 119
+ ++ ++ + PD+FT V++AC + +E G ++H A+KAG D FV +
Sbjct: 1021 VGMFVHLLRDSLLPDQFTVASVLRACSS---LEGGYYLATQIHACAMKAGVVLDSFVSTA 1077
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y K G ++ +F + SW ++ G SGD A
Sbjct: 1078 LIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKA 1122
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V WN + G + +A+ + MI + D TF ++ +E GK++HG
Sbjct: 900 VIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHG 959
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +++G + + V + L+++Y+K G V R +F +M ++SW TMISG SG
Sbjct: 960 IVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSG 1015
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 3/153 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDG-S 59
+I+ G D+ + L+ + + G A +F + + TWN ++ AL
Sbjct: 681 RILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADK 740
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
S L+ L+ + + T V K C+ S + + +HG AVK G D+FV
Sbjct: 741 SHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGA 800
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
L+++Y K G + R +FD M VR VV W M+
Sbjct: 801 LVNIYAKFGLIREARVLFDGMAVRDVVLWNVMM 833
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 48 NLMIRALTIDGSSL--QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+L +RA T + L +A L+++L C F+ +++ IA+ + GK H
Sbjct: 633 HLRLRAATSTANPLTPRAHLIHSLPQC-------FS---ILRQAIAASDLSLGKRAHARI 682
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASGD 160
+ +G D FV + L+ +Y KCG + RK+FD R +V+W ++S LAA D
Sbjct: 683 LTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHAD 739
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I++ + D ++ L+D+ + G + A +F + + +WN MI L G++ +
Sbjct: 1264 NIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKE 1323
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL + M G PD+ TF V+ AC S L E + + + G ++ S L+
Sbjct: 1324 ALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLV 1383
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS 147
D + G ++ K+ M + S
Sbjct: 1384 DALSRAGRIEEAEKVISSMPFEASAS 1409
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL D + L+++ + +G A ++F + V WN+M++A +A+
Sbjct: 787 VKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAM 846
Query: 65 LLYNLMICNGFRPDKFTF 82
LL++ GFRPD T
Sbjct: 847 LLFSEFHRTGFRPDDVTL 864
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II +GLS +V K++D C D+A +F+Q+ P+VF +N +IRA T +
Sbjct: 33 IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92
Query: 64 LLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y ++ F PD+FTFPF+ K+C + + GK+VHG K G + ++ L+D
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+K D+ K+FD+M R V+SW +++SG A G + A
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKA 194
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+ +W MI T G ++A+ + M G PD+ + V+ +C ++E GK +H
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHL 265
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
A + GF + V + L+++Y KCG + ++F +M + V+SW+TMISG A G+
Sbjct: 266 YAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHG 325
Query: 164 A 164
A
Sbjct: 326 A 326
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + L+++ S G A+ +F Q+ V +W+ MI G++ A+
Sbjct: 269 RRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIE 328
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDL 123
+N M +P+ TF ++ AC ++G + ++ + + ++ L+D+
Sbjct: 329 TFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM-MRQDYQIEPKIEHYGCLIDV 387
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G ++ ++ M ++ W +++S G+LD A
Sbjct: 388 LARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVA 429
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 92/157 (58%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D +L+ + ++ CS G + ++ +F+ P ++ +N +I+AL+ + +A+LLY
Sbjct: 68 GLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLY 127
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N ++ + R D ++ PFV+KA + LAI G+++H A+ G D+ V + L+ +Y C
Sbjct: 128 NRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSC 187
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G V R++FD + R V W M++G A GD+D A
Sbjct: 188 GCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNA 224
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D+A +F ++ +V +W +I +A+ ++ M PD+ +
Sbjct: 219 GDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAAL 278
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ +H K G S+ + + + L+D+Y KCG ++ ++F M +SV+
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVI 338
Query: 147 SWTTMISGLAASG 159
+WT+MI GLA G
Sbjct: 339 TWTSMIDGLALHG 351
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++GLS L L+D+ + GK + AL VF + V TW MI L + G +A
Sbjct: 297 IDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREA 356
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMD 122
L +++ M N +P++ TF ++ AC +E G+ + K G + ++D
Sbjct: 357 LEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMID 416
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
L + G + +++ M + W ++++ GD +
Sbjct: 417 LLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 92/157 (58%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D +L+ + ++ CS G + ++ +F+ P ++ +N +I+AL+ + +A+LLY
Sbjct: 68 GLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLY 127
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N ++ + R D ++ PFV+KA + LAI G+++H A+ G D+ V + L+ +Y C
Sbjct: 128 NRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSC 187
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G V R++FD + R V W M++G A GD+D A
Sbjct: 188 GCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNA 224
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D+A +F ++ +V +W +I +A+ ++ M PD+ +
Sbjct: 219 GDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAAL 278
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ +H K G S+ + + + L+D+Y KCG ++ ++F M +SV+
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVI 338
Query: 147 SWTTMISGLAASG 159
+WT+MI GLA G
Sbjct: 339 TWTSMIDGLALHG 351
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++GLS L L+D+ + GK + AL VF + V TW MI L + G +A
Sbjct: 297 IDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREA 356
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMD 122
L +++ M N +P++ TF ++ AC +E G+ + K G + ++D
Sbjct: 357 LEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMID 416
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
L + G + +++ M + W ++++ GD +
Sbjct: 417 LLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTF 82
+F G A +F + P +F WN +I+ G AL +++ MIC+G PDK+TF
Sbjct: 128 AFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTF 187
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
P VIKAC + G +HG A+ +GFS +MFVQ++L+ +Y+ CG V R++F+ M
Sbjct: 188 PLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLK 247
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
RSVVSW TMISG +G + A
Sbjct: 248 RSVVSWNTMISGWFQNGRPEEA 269
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 1 MQKIIRYGLSNDQLLVRK-LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+ K+++ +++ VR L+D+ S G D A LVF++ + V TW MI ++G+
Sbjct: 307 VHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGN 366
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL L M +G P+ T ++ AC + +++GK +H ++ D+ V +
Sbjct: 367 AKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTA 426
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
L+D+Y KC V ++F K ++ V W ++SGL
Sbjct: 427 LIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGL 462
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S++ + LL + GK A VF+ + V +WN MI +G +AL ++
Sbjct: 214 GFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVF 273
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N M+ PD T + +C +E G +VH L K + V++ L+D+Y +C
Sbjct: 274 NSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRC 333
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G +D +F + + + V++WT+MI+G +G+ +A
Sbjct: 334 GGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSA 370
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R L +D L+V L+D+ + ++ VF++ WN ++ L + + +A
Sbjct: 412 VMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREA 471
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ + TF VI A +++ +H V++GF + V + L+D+
Sbjct: 472 VGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDM 531
Query: 124 YLKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +D K+FD++ + + ++ W+ +I+G G + A
Sbjct: 532 YSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETA 574
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
++R G + ++ L+D+ S G D+A +F +I + + W+++I + G
Sbjct: 513 LVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGE 572
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKAC 89
A+LL+N M+ +G +P++ TF V+ AC
Sbjct: 573 TAVLLFNQMVHSGMQPNEITFTSVLHAC 600
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+F +N +IR G QA+LLY M+ G PDK+TFPF++ AC LA+ +G +VHG
Sbjct: 95 LFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHG 154
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+K G D+FV ++L+ Y +CG VD GRK+FD M R+VVSWT++I+G +
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSG 208
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G+ ++V L+D+ G A +F + ++ +N ++ +
Sbjct: 257 ISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDV 316
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ + M+ G RPDK T I AC + GK H ++ G + + ++D+
Sbjct: 317 LVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDM 376
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KCG + K+F+ M ++VV+W ++I+GL GD++ A
Sbjct: 377 YMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELA 417
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+ + GK D +F + +V +W +I + S +A
Sbjct: 156 VLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEA 215
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G P+ T VI AC +E GK+V + G + + L+D+
Sbjct: 216 VSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDM 275
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y+KCGD+ R++FD+ +++V + T++S
Sbjct: 276 YMKCGDICAARQIFDECANKNLVMYNTIMS 305
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F ++ + +WN MI AL +A+ L+ M G D+ T +
Sbjct: 412 GDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIA 471
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ K V K D+ + + L+D++ +CGD +F +M R V
Sbjct: 472 SACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVS 531
Query: 147 SWTTMISGLAASGDLDAA 164
+WT I +A G+ + A
Sbjct: 532 AWTAAIGVMAMEGNTEGA 549
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ S G A+ VF ++ V W I + ++G++ A+ L+N M+
Sbjct: 498 DLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEML 557
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ-STLMDLYLKCGDV 130
+PD F ++ AC ++++G+++ KA R V ++DL + G +
Sbjct: 558 EQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLL 617
Query: 131 DGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ + M + + V W ++++ +++ A
Sbjct: 618 EEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELA 652
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF QI P F WN ++R L + A++ Y G +PD TFPFV+KAC + A
Sbjct: 366 VFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYA 425
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++G+++H +K GF D+FV ++L+ LY CGD+ R +FD+M V+ VVSW ++I G
Sbjct: 426 PKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGG 485
Query: 155 LA 156
+
Sbjct: 486 YS 487
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ ++A L+F Q+ C +V +W +I T +A+ L+ M+ G P + T V
Sbjct: 19 WGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAV 78
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRS 144
+ A I G+ +HG VK G D V ++L+DLY K G V K+FD+M R+
Sbjct: 79 VPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRN 138
Query: 145 VVSWTTMISGLAASG 159
+VSWT++ISG A G
Sbjct: 139 LVSWTSIISGFAMHG 153
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F QI + +W+ MI A + +L L+ M +PD V+ AC A
Sbjct: 599 IFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGA 658
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ GK +H + D ++++L+D++ KCG + ++F +M + +SW ++I G
Sbjct: 659 LDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILG 718
Query: 155 LAASGDLDAA 164
LA +G D A
Sbjct: 719 LANNGFEDEA 728
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D + L+ L + G A +F ++ V +WN +I + +
Sbjct: 436 VIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEV 495
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC-------IASLAIEKGKEVHGLAVKAGFSRDMFV 116
L L+ LM + DK T VI AC +A + + H D+++
Sbjct: 496 LALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNH-------IEVDVYL 548
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+TL+D Y + G + K+F +M+ ++ V+ MI A G+L +A
Sbjct: 549 GNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSA 596
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R + D ++ L+D+ + G AL VF+++ +WN +I L +G +AL
Sbjct: 671 RNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALN 730
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQS 118
++ M+ G RP++ TF V+ AC +++G K VH L + M
Sbjct: 731 IFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQ------MKHYG 784
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
++ + + G ++ + ++M + V W ++ G++ A
Sbjct: 785 CVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVA 831
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ-IRCPHVFTWNLMIRALTIDGSSLQA 63
++ G+ +D + L+DL + G ++L VF + + ++ +W +I + G S++A
Sbjct: 99 VKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEA 158
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ M G RP++ TF VI AC +E+G
Sbjct: 159 LELFAEMRRAGIRPNRITFLSVINACSHGGLVEQG 193
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+Y LS LV K++D+C +A L+F Q++ P+ + +N MIRA T + A
Sbjct: 37 VIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALA 96
Query: 64 LLLYNLMI-------CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+L Y M+ N PD+FTFPFVIK+C + GK+VH K G ++ +
Sbjct: 97 ILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITM 156
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ L+D+Y KC + K+FD M R +SW ++ISG G + A
Sbjct: 157 ENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKA 204
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+ +W MI T GS AL ++ M G PD+ + V+ AC A+E GK +H
Sbjct: 216 IVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHM 275
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ G R + + LM++Y KCG + ++FD+M V+SW+TMI GLA G
Sbjct: 276 YCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHG 331
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + L+++ S G A +F Q+ V +W+ MI L G + +A+
Sbjct: 279 RNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIE 338
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------ 119
L+ M P+ TF ++ AC + G GLA S+D ++
Sbjct: 339 LFKRMKKAKIEPNGITFLGLLSACAHA-----GFWNEGLAYFDSMSKDYHIEPEVEHYGC 393
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L+D+ + G + + +KM ++ W +++S +LD A
Sbjct: 394 LVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIA 439
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 52/207 (25%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGK-TDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQ 62
I+ G D L +++ C+F + D+A VF Q+ P+ F WN ++R L + LQ
Sbjct: 43 IKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQ 102
Query: 63 --ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
AL+L++ M+C+G +P++FTFP V+KAC + + +GK++HGL VK GF D FV S
Sbjct: 103 SEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISN 162
Query: 120 LMDLYLKC-----------------------------------------------GDVDG 132
L+ +Y+ C GD+
Sbjct: 163 LVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKS 222
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +FD+M RSVVSW MISG A +G
Sbjct: 223 AKNLFDEMPPRSVVSWNVMISGYAQNG 249
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ V +WN+MI +G ++A+ L+ M + P+ T V+
Sbjct: 218 GDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A A+E GK +H A K D + S L+D+Y KCG +D ++F+ + R+ +
Sbjct: 278 PAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAI 337
Query: 147 SWTTMISGLAASGDLDAA 164
+W+ +I A G + A
Sbjct: 338 TWSAIIGAFAMHGRAEDA 355
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ S G D AL VF + + TW+ +I A + G + A++ ++LM
Sbjct: 304 DDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMG 363
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDV 130
G P+ + ++ AC + +E+G+ VK G + ++DL + G +
Sbjct: 364 KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHL 423
Query: 131 DGGRKMFDKMRVRS 144
+ ++ M +
Sbjct: 424 EEAEELIRNMPIEP 437
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 34/191 (17%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II G S L+ KLL G +A VF +I P WN MIR + + +
Sbjct: 56 QIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHK 115
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ LYN M+ P++FT+ F+I C S + +G++VHG V G+ ++FV+++L++
Sbjct: 116 LVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVN 175
Query: 123 L----------------------------------YLKCGDVDGGRKMFDKMRVRSVVSW 148
L Y++CGDVDG R++FD+M R+VVSW
Sbjct: 176 LYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSW 235
Query: 149 TTMISGLAASG 159
TTMI+G A G
Sbjct: 236 TTMIAGCAQIG 246
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F ++ +V +W MI G QAL L++ M G + D+ +
Sbjct: 215 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAAL 274
Query: 87 KACIASLAIEKGKEVHGL---AVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDKMR 141
AC ++ G +H + AG ++ + V ++L+ +Y CG +D K+F M+
Sbjct: 275 SACAELGDLKLGTWIHSYIDERLHAG-NQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQ 333
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
RS +SWT+MI+G A G + A
Sbjct: 334 QRSTISWTSMITGFAKQGHAEEA 356
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
I+K K++H + GFS+ F+ L+ Y+ G++ K+F+++ S W MI G
Sbjct: 47 IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRG 106
Query: 155 LAAS 158
+ S
Sbjct: 107 HSQS 110
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 6 RYGLSNDQLLV---RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
R N LLV L+ + + G D A VF ++ +W MI G + +
Sbjct: 296 RLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEE 355
Query: 63 ALLLYNLMICNGF---RPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQS 118
AL ++ M G RPD TF V+ AC + +++G+ + K G +
Sbjct: 356 ALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYG 415
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
++DL + G +D ++ + M ++ + W ++ G
Sbjct: 416 CMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGG 452
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 18 KLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
+L+D C S G ++A VF QI V+ WN MI+ G AL +Y M GF
Sbjct: 42 RLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGF 101
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PD FTFPFV+K C + G+ VH VK GF D++ S L+++Y+ CGD++ G K
Sbjct: 102 SPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLK 161
Query: 136 MFDKMRVRSVVSWTTMISGL 155
+F+ + +VV+WT++I+G
Sbjct: 162 VFEFIPKWNVVAWTSLIAGF 181
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 81/146 (55%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L ++D+ + GK A +F ++ ++ WN MI A + G +AL L+ M
Sbjct: 249 ILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMA 308
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
GF P+K TF VI AC G+ +H A++A F + + + LMD+Y K GD D
Sbjct: 309 GFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTA 368
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
K+F K+R + V++WTTMISGLA G
Sbjct: 369 LKIFSKLRKKDVMAWTTMISGLAIQG 394
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I++ G D LL++ G + L VF I +V W +I +
Sbjct: 129 NRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPK 188
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-------DM 114
+AL L+ M G P++ T + A I GK VH + GF ++
Sbjct: 189 EALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNV 248
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ + +MD+Y KCG + R +FDKM R++V W +MIS + G
Sbjct: 249 ILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYG 293
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
L+D+ + G D AL +FS++R V W MI L I G +AL ++ M P
Sbjct: 355 LMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAP 414
Query: 78 DKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D+ T+ V+ AC +E+G K+ + G M ++DL + G ++
Sbjct: 415 DQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEEL 474
Query: 137 FDKMRVRSVVS-WTTMISGLAASGDLDAA 164
KM + + +++++G G++ A
Sbjct: 475 LMKMPTQPNATILSSILNGCEMYGNVGLA 503
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDL--YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
K++H L + +++ S L+D + GD++ R +FD++ R+V W +MI G
Sbjct: 22 KQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYC 81
Query: 157 ASGD 160
GD
Sbjct: 82 NGGD 85
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 79/130 (60%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+AL +F+ I P +N+MIR L S ALLL+ M + DKFTF V+KAC
Sbjct: 72 DYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKAC 131
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
A+ +G++VH L +K+GF + FV++TL+ +Y CG + R +FD M RS+V+W
Sbjct: 132 SRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWN 191
Query: 150 TMISGLAASG 159
+M+SG +G
Sbjct: 192 SMLSGYTKNG 201
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ GL + L L+D+ + G+ D A +F ++ V W+ MI
Sbjct: 246 EYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCK 305
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ M P++ T V+ +C A E GK VH K + + + L+
Sbjct: 306 EALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLI 365
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D Y KCG +D ++F +M ++V +WT +I GLA +G+
Sbjct: 366 DFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGE 404
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G +++ + L+ + + G+ A VF + + WN M+ T +G +
Sbjct: 147 ILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEV 206
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ ++ D T V+ AC +E G+ + V G R+ + ++L+D+
Sbjct: 207 VKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDM 266
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG VD RK+FD+M R VV+W+ MISG A +
Sbjct: 267 YAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L+D + G D ++ VF ++ +VFTW +I+ L +G AL ++ M+ N +P
Sbjct: 363 QLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKP 422
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS--TLMDLYLKCGDVDGGRK 135
+ TF V+ AC + +++G+ + +++ F + ++ ++D+ + G ++ +
Sbjct: 423 NDVTFIGVLSACSHACLVDQGRHLFN-SMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQ 481
Query: 136 MFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
D M + V W T+++ A +++ A
Sbjct: 482 FIDNMPFPPNAVVWRTLLASCRAHKNIEMA 511
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ G D L KL+ + S G D+A VF + R ++ WN + RALT+ G
Sbjct: 101 RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
+ L LY M G D+FT+ +V+KAC+AS + KGKE+H + G++ +++
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIM 220
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TL+D+Y + G VD +F+ M VR+VVSW+ MI+ A +G
Sbjct: 221 TTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNG 262
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G ++ ++ L+D+ + +G D+A VF+ + +V +W+ MI +G + +A
Sbjct: 208 LTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEA 267
Query: 64 LLLYNLMICN--GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L + M+ P+ T V++AC + A+E+G+ +HG ++ G + V S L+
Sbjct: 268 LRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALV 327
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG +D G+++FD+M R VVSW ++IS G
Sbjct: 328 TMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHG 365
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL + ++ L+ + GK D VF ++ V +WN +I + + G +A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKA 370
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ ++ M+ NG P TF V+ AC +E+GK + + G + + ++D
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVD 430
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + +D KM MR W +++ G+++ A
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELA 473
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L +G QAL + + P + T+ +I C ++ G VH +
Sbjct: 50 NQLIQSLCKEGKLKQALRV----LSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILD 105
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D F+ + L+ +Y G VD RK+FDK R R++ W + L +G
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
>gi|255558954|ref|XP_002520500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540342|gb|EEF41913.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 414
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q ++ G D L KL+++ S +G D+A VF + R ++ +N + RALT+ G+
Sbjct: 95 QHLLDNGFDQDPFLATKLINMYSSFGSIDNARKVFDKTRSRTLYVYNALFRALTLVGNGE 154
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
+ L LY M G D+FT+ +V+KAC+AS + ++KGKE+H ++ G+ + +
Sbjct: 155 EVLRLYRRMNSIGMPSDRFTYTYVLKACVASNSLLSLLKKGKEIHAQILRRGYEAHVHIM 214
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TL+D+Y + G V +F +M V++VVSW+ MI+ A +G
Sbjct: 215 TTLVDMYARFGYVSYASCVFSEMSVKNVVSWSAMIACYAKNG 256
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+R G ++ L+D+ + +G +A VFS++ +V +W+ MI +G +
Sbjct: 201 QILRRGYEAHVHIMTTLVDMYARFGYVSYASCVFSEMSVKNVVSWSAMIACYAKNGRPFE 260
Query: 63 ALLLYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL L+ M+ P+ T V++AC A A+E+GK +HG ++ G + V S+L
Sbjct: 261 ALELFREMMLETKDMCPNSVTMVSVLQACAALAALEQGKLLHGYILRRGLDSILPVISSL 320
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +Y +CG + + +FD+M R VVSW ++IS G
Sbjct: 321 VTMYARCGKLQLAQHVFDQMDKRDVVSWNSLISSYGVHG 359
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L G+ QAL L +CN P + T+ ++ +C + + VH +
Sbjct: 44 NKLIQSLCKQGNLKQALNL----LCNEPDPAQHTYELLLLSCTHQNSFLDAQFVHQHLLD 99
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
GF +D F+ + L+++Y G +D RK+FDK R R++ + + L G+
Sbjct: 100 NGFDQDPFLATKLINMYSSFGSIDNARKVFDKTRSRTLYVYNALFRALTLVGN 152
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL + ++ L+ + + GK A VF Q+ V +WN +I + + G +A
Sbjct: 305 ILRRGLDSILPVISSLVTMYARCGKLQLAQHVFDQMDKRDVVSWNSLISSYGVHGFGKKA 364
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ ++ M NG P +F V+ AC + +E+GK
Sbjct: 365 IQIFKDMTRNGVFPSPISFVSVLGACSHAGLVEEGK 400
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 34/191 (17%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II G S L+ KLL G +A VF +I P WN MIR + + +
Sbjct: 40 QIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHK 99
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ LYN M+ P++FT+ F+I C S + +G++VHG V G+ ++FV+++L++
Sbjct: 100 LVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVN 159
Query: 123 L----------------------------------YLKCGDVDGGRKMFDKMRVRSVVSW 148
L Y++CGDVDG R++FD+M R+VVSW
Sbjct: 160 LYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSW 219
Query: 149 TTMISGLAASG 159
TTMI+G A G
Sbjct: 220 TTMIAGCAQIG 230
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F ++ +V +W MI G QAL L++ M G + D+ +
Sbjct: 199 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAAL 258
Query: 87 KACIASLAIEKGKEVHGL---AVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDKMR 141
AC ++ G +H + AG ++ + V ++L+ +Y CG +D K+F M+
Sbjct: 259 SACAELGDLKLGTWIHSYIDERLHAG-NQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQ 317
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
RS +SWT+MI+G A G + A
Sbjct: 318 QRSTISWTSMITGFAKQGHAEEA 340
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G R + F +++ C I+K K++H + GFS+ F+ L+ Y+ G++
Sbjct: 13 GLRALQQHFFSLLQTCDT---IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNA 69
Query: 134 RKMFDKMRVRSVVSWTTMISGLAAS 158
K+F+++ S W MI G + S
Sbjct: 70 HKVFERIENPSTTVWNQMIRGHSQS 94
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 6 RYGLSNDQLLV---RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
R N LLV L+ + + G D A VF ++ +W MI G + +
Sbjct: 280 RLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEE 339
Query: 63 ALLLYNLMICNGF---RPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQS 118
AL ++ M G RPD TF V+ AC + +++G+ + K G +
Sbjct: 340 ALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYG 399
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
++DL + G +D ++ + M ++ + W ++ G
Sbjct: 400 CMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGG 436
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ GL+ D + ++L C S G ++A LVF+QIR P++F WN +IR + +
Sbjct: 18 QLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPH 77
Query: 62 QALLLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
A+ L+ M+ +P + T+P V KA +G ++HG +K G D F+Q+T
Sbjct: 78 NAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNT 137
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++Y+ CG + +++FD VV+W TMI GLA G++D +
Sbjct: 138 ILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKS 182
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 31/193 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDL---CSFYGKT----------------------------DH 31
++I+ GL NDQ + +L++ C F G+ D
Sbjct: 122 RVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDK 181
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+ +F ++ + +WN MI G +A+ L++ M G +P +FT ++ AC
Sbjct: 182 SRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACAC 241
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A+ +G+ +H VK F+ + V + ++D+Y KCG +D ++F + + W ++
Sbjct: 242 LGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSL 301
Query: 152 ISGLAASGDLDAA 164
I GLA SG + A
Sbjct: 302 ILGLAMSGRGNEA 314
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ + + +++ ++D+ S G D AL VF + WN +I L + G +A
Sbjct: 255 IVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEA 314
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
+ L++ + + +PD +F V+ AC + +++ K+ + L + + + ++ S ++
Sbjct: 315 VRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKD-YFLLMSETYKIEPSIKHYSCMV 373
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
D+ + G ++ ++ M V + W +++S G+++ A
Sbjct: 374 DVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMA 417
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 30 DHALLVFSQ--IRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ A LVF + IR P +F WN +IRA T ++A+ L++ M G +PD FT+PFV+K
Sbjct: 50 EFARLVFDRLPIRAP-IFAWNSIIRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVK 108
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
AC SL + G +H + VKAGF D +V +TL+ +Y V R++F++M VR VVS
Sbjct: 109 ACGRSLVVGAGGAMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVS 168
Query: 148 WTTMISGLAA 157
W++MI+G A
Sbjct: 169 WSSMIAGYVA 178
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 77/153 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G +D+ + LL + + A VF+++ V +W+ MI A
Sbjct: 126 IVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQADA 185
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+++ M+ +P+ T ++ AC L I G+ +H + D+ + + ++++
Sbjct: 186 LMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAILEM 245
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y KCG ++ K+F+ + +++ SWT MISGLA
Sbjct: 246 YSKCGHIEKALKVFNSLTEKNLQSWTIMISGLA 278
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L +L++ S G + AL VF+ + ++ +W +MI L A+ L+ M
Sbjct: 235 DVALGTAILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQME 294
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDV 130
G +PD +F ++ AC +++G+ VK R M ++D++ + G +
Sbjct: 295 QTGLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMI 354
Query: 131 DGGRKMFDKM 140
+ ++ M
Sbjct: 355 EEAYEIIKNM 364
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+R GL KL + S + D+A VF +I P+++TWN +IRA +
Sbjct: 54 ILRSGLFFHPYNASKLFSVAALSSFSSLDYARKVFEEISQPNLYTWNTLIRAFASSPEPI 113
Query: 62 QALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+LL++ M+ + P+KFTFPFVIKA ++ + +HG+A+KA D+F+ ++L
Sbjct: 114 HSLLIFIRMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSL 173
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y CGD+D +F K+ + VVSW +MI G G D A
Sbjct: 174 IHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKA 217
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 85/160 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ L +D ++ L+ + G D A VF +I V +WN MI+ + G +AL
Sbjct: 159 IKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKAL 218
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ LM RP+ T V+ AC + +E G+ V + G + ++ V + ++D+Y
Sbjct: 219 ELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMY 278
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K G ++ R++FDKM + + SWTTMI G A D DAA
Sbjct: 279 VKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAA 318
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LLYNLMICNGFRPDKFTFPFVIKA 88
D A VF + + WN++I A DG +AL + + L + +PD+ T + A
Sbjct: 316 DAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSA 375
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C AI+ G +H K + + ++L+D+Y KCG+V+ +F + R V W
Sbjct: 376 CAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVW 435
Query: 149 TTMISGLAASGDLDAA 164
+ MI+GLA G AA
Sbjct: 436 SAMIAGLAMHGRGRAA 451
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ S G+ + AL +F + VF W+ MI L + G A+ L+ M
Sbjct: 403 LTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETK 462
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
RP+ TF ++ AC + + +G+ + F R F
Sbjct: 463 VRPNAVTFTNLLCACSHTGLVNEGRMFFNQMESSTFKRLQF 503
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/140 (38%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Query: 18 KLLDLC---SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
KL+D C F ++A L+F QI P+V+ +N MI+ + +L LY M+ NG
Sbjct: 43 KLIDFCVDSHFDEYFNYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNG 102
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
+ PD FTFPFV+KAC GK VH +K+GF +++V + L+++Y++C +++ G
Sbjct: 103 YSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGL 162
Query: 135 KMFDKMRVRSVVSWTTMISG 154
K+FDK+ +VV+WT +I+G
Sbjct: 163 KVFDKIPKWNVVAWTCLING 182
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+ +++ +L ++++ + G + A +F+++ ++ WN MI A +AL L
Sbjct: 244 FASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGL 303
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M+ NGF PDK TF V+ C + G+ VH +K+ ++D+ + + L+D+Y K
Sbjct: 304 FFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAK 363
Query: 127 CGDVDGGRKMFDK-MRVRSVVSWTTMISGLAASG 159
G++ +K+F+ + + VV WT+MI+ LA G
Sbjct: 364 NGELGSAQKIFNNSLEKKDVVMWTSMINALAIHG 397
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + + LL++ + L VF +I +V W +I I+ +A
Sbjct: 133 ILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-------SRDMFV 116
L ++ M G ++ T + AC ++ G+ VH KAG+ + ++ +
Sbjct: 193 LEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVIL 252
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ ++++Y KCG ++ R++F+KM R++V+W MI+
Sbjct: 253 ATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINA 290
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I++ GL D L+ C+ +G D+A +F Q+ F +N M+R D ++
Sbjct: 53 RILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNT 112
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL+ Y M G +PD FT+P ++KAC A+E+G +VH +K G D+FVQ++L
Sbjct: 113 EEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSL 172
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +Y KCG++ +F++M RSV SW+ +I+ A+ G
Sbjct: 173 ISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG 211
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL ND + L+ + G+ VF Q+ V +W+ +I A G
Sbjct: 157 ILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDC 216
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L M G+ R ++ V+ AC A++ G+ VHG ++ ++ V+++L++
Sbjct: 217 LRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIE 276
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+YLKCG + G +F KM ++ +S++ MISGLA G
Sbjct: 277 MYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHG 313
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+ +F ++ + ++++MI L + G + L ++ M+ G PD + V+ AC
Sbjct: 287 GMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSH 346
Query: 92 SLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWT 149
+ +++G + + + ++ G + ++DL + G +D ++ M + + V W
Sbjct: 347 AGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWR 406
Query: 150 TMISGLAASGDLDAA 164
+++S +L A
Sbjct: 407 SLLSASKVHNNLQAG 421
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 88/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ D ++ +LD+ G+ A VF+QI P W +I +G QA
Sbjct: 526 VIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQA 585
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y+ M G +PD++TF ++KAC A+E+GK++H +K + D FV ++L+D+
Sbjct: 586 LFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDM 645
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+++ +F +M RSV W MI GLA G+ + A
Sbjct: 646 YAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEA 686
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 93/160 (58%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ D + L+D+ S GK + A L+F + +WN M+ T+ + +AL
Sbjct: 426 LKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREAL 485
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++LM G + D+ TF KA + +++GK++H + +K F D+FV S ++D+Y
Sbjct: 486 RLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMY 545
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LKCG++ RK+F+++ V+WTT+ISG +G+ + A
Sbjct: 546 LKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQA 585
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G + +++ G ++A +F Q++ + +WN +I G +
Sbjct: 323 VVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECS 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK--GKEVHGLAVKAGFSRDMFVQSTLM 121
L L+ ++ +G PD+FT V++AC +SL G++VH A+KAG D FV + L+
Sbjct: 383 LRLFIDLLRSGLLPDQFTITSVLRAC-SSLEESYCVGRQVHTCALKAGIVLDSFVSTALI 441
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y K G ++ +F + SW M+ G S + A
Sbjct: 442 DVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREA 484
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVH 102
V WN + + G +A+ + MI + D T+ VI + +ASL +E GK++H
Sbjct: 262 VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTY-IVILSVVASLNHLELGKQIH 320
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G V+ G+ + + V ++ +++Y+K G V+ R+MF +M+ ++SW T+ISG A SG
Sbjct: 321 GAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG 377
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I++ + D ++ L+D+ + G + A +F ++ V WN MI L G++ +
Sbjct: 626 NIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEE 685
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL +N M G PD+ TF V+ AC S L + K + G ++ S L+
Sbjct: 686 ALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLV 745
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGD 160
D + G + K+ M S + T+++ GD
Sbjct: 746 DALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGD 785
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76
RKL D+ ++D L+ ++ I + T L T + + LL ++M+
Sbjct: 68 RKLFDITP---QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTT--- 121
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
+ T + K C+ + + + G AVK G D+FV L+++Y K + R +
Sbjct: 122 --RHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVL 179
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLD 162
FD+M VR VV W M+ G D
Sbjct: 180 FDRMPVRDVVLWNVMMKAYVEMGAGD 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD--KMRV 142
+++ IA + GK H + V +G + D +V + L+ +Y KCG + RK+FD
Sbjct: 19 ILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSD 78
Query: 143 RSVVSWTTMISGLAASGDL 161
R +V++ +++ A +G+L
Sbjct: 79 RDLVTYNAILAAYAHTGEL 97
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 80/135 (59%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D+A +F Q+ P +F WN M+R + S ++A+ LY M G +PDKFTF F++
Sbjct: 61 GTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLL 120
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC G +HG A+K GF + FV++TL+ + KCGD+ R+MFD R VV
Sbjct: 121 KACTRLEWRNMGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVV 180
Query: 147 SWTTMISGLAASGDL 161
+W+ + +G A G+L
Sbjct: 181 AWSALTAGYARRGEL 195
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F+++ V TWN MI G + QAL ++ MI G +PD+ T ++
Sbjct: 224 GEMACARKLFNEVPRRDVVTWNAMIAGFVHCGENEQALEMFEEMISVGEQPDEVTMLSLL 283
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC +E GK+VH ++ + + + L +Y KCG ++ ++F MR + V
Sbjct: 284 SACTDLGDLEVGKKVHSSILEMSLGDLSVLLGNALTYMYAKCGSIERALEVFRGMREKDV 343
Query: 146 VSWTTMISGLAASGDLDAA 164
+W ++I GLA G + +
Sbjct: 344 TTWNSVIVGLALHGHAEES 362
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G + AL VF +R V TWN +I L + G + +++ L+ M N +P++ TF V
Sbjct: 326 GSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQRLNNIKPNEITFVGV 385
Query: 86 IKACIASLAIEKGKE----VHGLAVKAGFSR 112
+ AC + +E+G+ + L + AGF R
Sbjct: 386 LVACSHAGKVEEGQRYFDLMTNLYILAGFLR 416
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS---SLQALLLYNLM 70
L ++L S + ++A VF Q+ P+ F WN++IRA S +A+LLYN M
Sbjct: 58 FLYSRILHFSSLH-DLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTM 116
Query: 71 ICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+ PD TFPFV+KAC A+ +GK+ H +K GF D+++ ++L+ Y CG
Sbjct: 117 LQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGS 176
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ + +FDKM RS+VSW MI G+ + A
Sbjct: 177 LESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETA 211
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +D + L+ + G + A VF ++ + +WN MI A + G A
Sbjct: 152 LLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETA 211
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRD-MFVQST 119
L L+ F PD +T VI AC A+ G H ++ +RD + V ++
Sbjct: 212 LQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNS 271
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG +D ++F+ M+ V SW +MI G A G
Sbjct: 272 LLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHG 311
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 8 GLSNDQLLVRK-LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
++ D +LV LLD+ G D A +F ++ V +WN MI + G AL
Sbjct: 260 SVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALEC 319
Query: 67 YNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLY 124
+ MI + F P+ TF V+ AC + +G++ + V + L+D+
Sbjct: 320 FERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDIL 379
Query: 125 LKCGDVDGGRKMFDKMRVRS-VVSWTTMI 152
+ G +D ++ M ++ VV W +++
Sbjct: 380 ARAGLIDEALELVASMPMKPDVVIWRSLL 408
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I+ + + + +L+D C S G ++A VF Q V+ WN MI+ G
Sbjct: 28 MIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGDKF 87
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL +Y M GF PD FTFPFV+K C A + G+ VH VK GF D++ S L+
Sbjct: 88 GALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLL 147
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
++Y+ CGD++ G K+F+ + +VV+WT++I+G
Sbjct: 148 NMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGF 181
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 81/146 (55%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L ++D+ + GK A +F ++ ++ WN MI A + G +AL L+ M
Sbjct: 249 ILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELA 308
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
GF P+K TF VI+AC G+ +H +KA F + + + LMD+Y K GD D
Sbjct: 309 GFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADTA 368
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
K+F K+R + V++WTTMISGLA G
Sbjct: 369 LKIFSKLRKKDVMAWTTMISGLAIQG 394
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I++ G D LL++ G + L VF I +V W +I +
Sbjct: 129 NRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPK 188
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH------GLAVKAGFSR-DM 114
+AL L+ M G P++ T + A I GK V GL SR ++
Sbjct: 189 EALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNV 248
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ + +MD+Y KCG + R +FDKM R++V W +MIS + G
Sbjct: 249 ILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYG 293
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
L+D+ + G D AL +FS++R V W MI L I G +AL ++ M P
Sbjct: 355 LMDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAP 414
Query: 78 DKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D+ T+ V+ AC +E+G K + G M ++DL + G + ++
Sbjct: 415 DQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEEL 474
Query: 137 FDKMRVRSVVS-WTTMISGLAASGDLDAA 164
KM + + +++++G G++ A
Sbjct: 475 LVKMPTQPNATILSSILNGCEMYGNVGLA 503
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDL--YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
K++H L +K +++ S L+D + GD++ R +FD+ +V W +MI G
Sbjct: 22 KQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYC 81
Query: 157 ASGD 160
GD
Sbjct: 82 NGGD 85
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ G D L KL+ + S G D+A VF + R ++ WN + RALT+ G
Sbjct: 101 RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
+ L LY M G D+FT+ +V+KAC+AS + KGKE+H + G+S +++
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM 220
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TL+D+Y + G VD +F M VR+VVSW+ MI+ A +G
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNG 262
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G S+ ++ L+D+ + +G D+A VF + +V +W+ MI +G + +A
Sbjct: 208 LTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEA 267
Query: 64 LLLYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L + M+ P+ T V++AC + A+E+GK +HG ++ G + V S L+
Sbjct: 268 LRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALV 327
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG ++ G+++FD+M R VVSW ++IS G
Sbjct: 328 TMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 365
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL + ++ L+ + GK + VF ++ V +WN +I + + G +A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ ++ M+ NG P TF V+ AC +E+GK + + G + + ++D
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + +D KM MR W +++ G+++ A
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELA 473
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L +G QA+ + + P + T+ +I C ++ VH +
Sbjct: 50 NQLIQSLCKEGKLKQAIRV----LSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D F+ + L+ +Y G VD RK+FDK R R++ W + L +G
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 8 GLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G +D +R+LL + G HA LVF QI P +F +N +IR + A+
Sbjct: 35 GFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVS 94
Query: 66 LYNLMI----CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LY M C G RPDK TFPFV++AC A A G +VH VKAG D FV++ L+
Sbjct: 95 LYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALI 154
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ CG++ +FD V+W+ MI+G A GD+ AA
Sbjct: 155 GMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAA 197
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 12 DQLLVRKLLDLCSF---------------YGKTDHALLVFSQIRCPHVFTWNLMIRALTI 56
D + RKL D C G+ A ++F++I V +WN MI
Sbjct: 193 DIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVR 252
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG----LAVKAGFSR 112
GS + A+ L+ M G +PD T ++ AC S I+ G+ +H + ++ GF+
Sbjct: 253 CGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFT- 311
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+ + + L+D+Y KCG + ++F MR + V +W ++I GLA G +
Sbjct: 312 -VILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHV 359
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G AL VF +R V TWN +I L + G L+++ ++ M+
Sbjct: 313 ILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKE 372
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVD 131
RPD+ TF V+ AC ++KG+E L ++ + + V+ ++D+ + G +
Sbjct: 373 KVRPDEITFVAVLIACSHGGMVDKGREYFNL-MQHHYRIEPNVKHYGCMVDMLGRAGLLK 431
Query: 132 GGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ D M+V + V W T++ G+++ A
Sbjct: 432 EAFEFIDTMKVEPNSVIWRTLLGACRVHGEIELA 465
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+R+G+ + ++ LL L G + A +F + V +WN+MI G
Sbjct: 68 EHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQ 127
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A L+ LM G PDKFTF ++ AC + A+ G+EVH ++AG + + V + L+
Sbjct: 128 EAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALI 187
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V R++FD M R VSWTT+ A SG
Sbjct: 188 SMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 225
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 87/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL+N+ + L+ + + G A VF + +W + A G + +
Sbjct: 170 RVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQE 229
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L Y+ M+ G RP + T+ V+ AC + A+EKGK++H V++ D+ V + L
Sbjct: 230 SLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTK 289
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+KCG V R++F+ + R V++W TMI GL SG L+ A
Sbjct: 290 MYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEA 331
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 83/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ GL +D L+++ S G A VF ++ V +W ++ G ++
Sbjct: 372 RAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVE 431
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ + M+ G +K T+ V+KAC +A++ GKE+H VKAG D+ V + LM
Sbjct: 432 SFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMS 491
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V+ ++ + M R VV+W T+I GLA +G
Sbjct: 492 MYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNG 528
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + V WN MI L G +A +++ M+ PD+ T+ ++
Sbjct: 295 GAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAIL 354
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC + GKE+H AVK G D+ + L+++Y K G + R++FD+M R VV
Sbjct: 355 SACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVV 414
Query: 147 SWTTMISGLAASGDL 161
SWT ++ G A G +
Sbjct: 415 SWTALVGGYADCGQV 429
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 54/86 (62%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G + D + + ++++C+ + + GK+VH ++ G ++++ +TL+ LY+ CG V+
Sbjct: 39 GSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEA 98
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
R++FDK +SVVSW MISG A G
Sbjct: 99 RRLFDKFSNKSVVSWNVMISGYAHRG 124
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G+ D + L+ + G + A+ V + V TWN +I L +G L+
Sbjct: 473 EVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLE 532
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST--- 119
AL + +M RP+ TF V+ AC +E+G+ A +D + T
Sbjct: 533 ALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQF-----ASMRKDYGIVPTEKH 587
Query: 120 ---LMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
++D+ + G + + M + S W +++ A G+++
Sbjct: 588 YACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVE 634
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 89/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR L+ D+++ LLDL G D A +F Q++ V +W MI DG +
Sbjct: 246 LIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEG 305
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL+ ++ +G RP+++TF V+ AC A GKEVHG + AG+ F S L+ +
Sbjct: 306 FLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHM 365
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+ R++F++M +VSWT++I G A +G D A
Sbjct: 366 YSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEA 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 10/142 (7%)
Query: 21 DLCSFY---------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
DLCS+ G+ + A +F ++ F+WN I +AL L+ +M
Sbjct: 152 DLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQ 211
Query: 72 CNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ +KFT + A A + GKE+HG ++ + D V S L+DLY KCG +
Sbjct: 212 RHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSL 271
Query: 131 DGGRKMFDKMRVRSVVSWTTMI 152
D R +FD+M+ R VVSWTTMI
Sbjct: 272 DEARGIFDQMKDRDVVSWTTMI 293
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
RP + +I AC+ A+E G+ VH + F +F+ + L+D+Y KCG + +
Sbjct: 84 RPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQM 143
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R + SW TMI G A G L+ A
Sbjct: 144 LFDEMGHRDLCSWNTMIVGYAKLGRLEQA 172
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G + L+ + S G T A VF+++ P + +W +I +G +A
Sbjct: 347 MMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEA 406
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L + L++ +G +PD+ T+ V+ AC + ++KG E H + K G + ++D
Sbjct: 407 LHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVID 466
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
L + G + D M V+ W +++ G G+L+ A
Sbjct: 467 LLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELA 509
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 92/162 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II +GL+ + + KLL LC G +A L+F QI P+ F +N +IR + ++
Sbjct: 61 QIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMK 120
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+LLL+ M+ G P++FTFPFV+KAC A + VH A+K G VQ+ ++
Sbjct: 121 SLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILT 180
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+ C + R++FD + R++VSW +MI+G + G D A
Sbjct: 181 AYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEA 222
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF I + +WN MI + G +A+LL+ M+ G D FT ++ A
Sbjct: 194 VFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCN 253
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ G+ VH V G D V + L+D+Y KCG + + +FD+M + VVSWT+M++
Sbjct: 254 LDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNA 313
Query: 155 LAASGDLDAA 164
A G ++ A
Sbjct: 314 YANQGLVENA 323
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A+ +F+ + +V +WN +I L +G +A+ L++ M +G PD T ++
Sbjct: 318 GLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSIL 377
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C + + GK+ H + + + ++L+D+Y KCG + +F M ++VV
Sbjct: 378 SCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVV 437
Query: 147 SWTTMISGLAASG 159
SW +I LA G
Sbjct: 438 SWNVIIGALALHG 450
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G A+ +F + +V +WN++I AL + G +A+ ++ M +G
Sbjct: 407 LCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASG 466
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGG 133
PD+ TF ++ AC S ++ G+ + + S + + ++DL + G +
Sbjct: 467 LYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEA 526
Query: 134 RKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ KM V+ VV W ++ G+L+ A
Sbjct: 527 MTLIQKMPVKPDVVVWGALLGACRIYGNLEIA 558
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 86/134 (64%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A+ +F I+ P++ WN M R ++ S+ AL LY MI G P+ ++FPF++K+C
Sbjct: 17 YAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCA 76
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
S A+ +G+++HG +K G+ DM+V ++L+ +Y + G ++ K+FD+ R VVS+T
Sbjct: 77 KSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTA 136
Query: 151 MISGLAASGDLDAA 164
+I+G A+ G ++ A
Sbjct: 137 LITGYASRGYINNA 150
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F + V +WN +I T +ALLL
Sbjct: 226 HGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLL 285
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T V+ AC AI+ G+ +H K G + + ++L+D+Y
Sbjct: 286 FQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMY 345
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ +++FD M RS+ SW MI G A G +AA
Sbjct: 346 AKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAA 385
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 69/128 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A +F +I V +WN MI + +AL LY M+ +PD+ T V+
Sbjct: 145 GYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVV 204
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G+++H GF ++ + + L+DLY KCG+V+ +F + + V+
Sbjct: 205 SACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVI 264
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 265 SWNTLIGG 272
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L+ L+D+ + G + A VF + + +WN MI + G + A L+
Sbjct: 330 GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLF 389
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M NG PD TF ++ AC S ++ G+ + ++ + + ++DL
Sbjct: 390 SKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGH 449
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
CG ++M M + V W +++ +++
Sbjct: 450 CGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVE 486
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 4/166 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ L D + KL+ S A+ VF+Q+ P+V +N +IRA ++ G+
Sbjct: 44 QLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESN 103
Query: 63 ALLLYNLMI---CNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQS 118
+L + +++ +G D FT+PF++K C S + + K VH K GF D+FV +
Sbjct: 104 SLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPN 163
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+L+D Y +CGDV+ K+F M R VVSW +M+ GL +GDLD A
Sbjct: 164 SLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGA 209
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 27 GKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G D A ++F RCP ++ W +I G +A+ L + M +G R D F
Sbjct: 266 GDMDMARMLFD--RCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFIS 323
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-R 143
++ AC S + GK++H +++ F V ++ +D+Y KCG VD ++F+ M+ +
Sbjct: 324 ILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEK 383
Query: 144 SVVSWTTMISGLAASG 159
+VSW +MI G G
Sbjct: 384 DLVSWNSMIHGFGIHG 399
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G D + L+D G + A+ VFS + V +WN M+ L +G A
Sbjct: 150 VEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGA 209
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +++ M D+ ++ ++ + ++K ++ + RD+ ST++
Sbjct: 210 LKVFDEMP----ERDRVSWNTMLDGFTKAGEMDKAFKLFERMAE----RDIVSWSTMVCG 261
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K GD+D R +FD+ V+++V WTT+ISG A G + A
Sbjct: 262 YSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEA 302
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ +D+ + G D A VF+ ++ + +WN MI I G +++ L+N M+
Sbjct: 355 VLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVRE 414
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGK 99
GF+PD++TF ++ AC + + +G+
Sbjct: 415 GFKPDRYTFIGLLCACTHAGLVNEGR 440
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L +L + +G+T HA VF+++ VF+WN+M+ G +AL LY+ M+ G
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD +TFP V+++C G+EVH ++ GF+ ++ V + LM +Y KCGDV R
Sbjct: 191 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAAR 250
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD M V +SW MI+G +G+ +A
Sbjct: 251 KVFDSMAVMDCISWNAMIAGHFENGECNAG 280
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G + + ++ L+ + + G A VF + +WN MI +G
Sbjct: 221 VLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAG 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ + +P+ T V A I KE+HGLAVK GF+ D+ ++L+ +
Sbjct: 281 LELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQM 340
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G + R +F +M R +SWT MISG +G D A
Sbjct: 341 YASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKA 381
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ LL++ + + D A+ VF + V +W+ MI + + +AL + M+ +
Sbjct: 433 VVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD 492
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+P+ TF + AC A+ A+ GKE+H ++ G + + ++ + L+DLY+KCG
Sbjct: 493 -VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYA 551
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
F + VVSW MI+G A G+ + A
Sbjct: 552 WAQFCAHGAKDVVSWNIMIAGFVAHGNGETA 582
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + D L+ + + G A VFS++ +W MI +G +AL
Sbjct: 323 VKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKAL 382
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y LM N PD T + AC +++ G ++H LA GF + V + L+++Y
Sbjct: 383 EVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMY 442
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K +D ++F M + VVSW++MI+G
Sbjct: 443 AKSKRIDKAIEVFKCMPEKDVVSWSSMIAGF 473
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G++ + L L+DL G+T +A F V +WN+MI G+ A
Sbjct: 523 VLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETA 582
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L +N M+ G PD+ TF ++ AC + +G E+ H + K ++ + ++D
Sbjct: 583 LSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVD 642
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
L + G + ++M + W +++G
Sbjct: 643 LLSRVGQLTEAYNFINEMPITPDAAVWGALLNG 675
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT--DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I GL + +RKL+ L + + HA L+F I P + +N M R + L
Sbjct: 11 LITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMFRVYAASPTPL 70
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
ALLL+ M+ +G PD +TFPF++KAC A + KG+E+H A+K G +FV+++L+
Sbjct: 71 HALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLGGHVFVENSLI 130
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY +D R++FD M R + SWTT+++ A S + AA
Sbjct: 131 HLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAA 173
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ V +++ MI A +AL L+ + P V+ AC A
Sbjct: 176 VFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGA 235
Query: 95 IEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
++ G+ V+ ++ G D + + L+D++ KCG ++ +F+ + + V WT M+S
Sbjct: 236 LDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLS 295
Query: 154 GLAASG 159
GLA G
Sbjct: 296 GLAMHG 301
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ G +HALLVF + HV W M+ L + G Q + + M+
Sbjct: 255 DSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMV 314
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG 98
+G +P+ TF ++ C S + +G
Sbjct: 315 DSGVKPNGVTFVALLSGCSHSGLVNEG 341
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 89/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + D ++ +LD+ G+ + A +F++I P W MI +G A
Sbjct: 1135 VVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHA 1194
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y+ M + +PD++TF ++KAC A+E+G+++H VK + D FV ++L+D+
Sbjct: 1195 LFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDM 1254
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+++ R +F + + SW MI GLA G+ + A
Sbjct: 1255 YAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEA 1295
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ D + L+D+ S GK + A +F + +WN M+ + G +AL
Sbjct: 1035 MKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKAL 1094
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY LM +G R ++ T KA + +++GK++ + VK GF+ D+FV S ++D+Y
Sbjct: 1095 RLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMY 1154
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LKCG+++ R++F+++ V+WTTMISG +G + A
Sbjct: 1155 LKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHA 1194
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL + L+++ G A VF Q+ + +WN MI + G +
Sbjct: 932 VVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS 991
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLA--IEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ ++ ++ G PD+FT V++AC +SL ++H A+KAG D FV +TL+
Sbjct: 992 VGMFVDLLRGGLLPDQFTVASVLRAC-SSLGGGCHLATQIHACAMKAGVVLDSFVSTTLI 1050
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y K G ++ +F + SW M+ G SGD A
Sbjct: 1051 DVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKA 1093
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V WN + G + +A+ + MI + D TF ++ +E GK++HG
Sbjct: 871 VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG 930
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ V++G + + V + L+++Y+K G V R +F +M +VSW TMISG A SG
Sbjct: 931 IVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSG 986
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSS 60
+I+ G D+ L L+ + S G A +F + TWN ++ A +
Sbjct: 651 RILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA--DKA 708
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L+ L+ + + T V K C+ S + + +HG AVK G D+FV L
Sbjct: 709 RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGAL 768
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+++Y K G + R +FD M +R VV W M+ +G
Sbjct: 769 VNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTG 807
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ + G + A +F + + +WN MI L G++ +AL + M
Sbjct: 1244 DPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMK 1303
Query: 72 CNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G PD+ TF V+ AC S L E + + + G ++ S L+D + G +
Sbjct: 1304 SRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRI 1363
Query: 131 DGGRKMFDKMRVRSVVS 147
K+ M + S
Sbjct: 1364 REAEKVISSMPFEASAS 1380
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM--RV 142
+++ IA+ + GK H + +G D F+ + L+ +Y KCG + RK+FD
Sbjct: 632 ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTS 691
Query: 143 RSVVSWTTMISGLA 156
R +V+W ++S A
Sbjct: 692 RDLVTWNAILSAHA 705
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL D + L+++ + +G+ A ++F + V WN+M++A G +AL
Sbjct: 754 VKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEAL 813
Query: 65 LLYNLMICNGFRPDKFTF 82
LL++ G RPD T
Sbjct: 814 LLFSEFNRTGLRPDDVTL 831
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I++ GL D L+ C S +G ++A +F QI P F +N MIR
Sbjct: 54 ILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLE 113
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ALLLY M+ G PD FT+PFV+KAC +A+++G ++H AG D+FVQ+ L+
Sbjct: 114 EALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLI 173
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+Y KCG ++ +F++M +SV SW+++I A+
Sbjct: 174 SMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHAS 209
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ GL D + L+ + G +HA +VF Q+ V +W+ +I A +
Sbjct: 157 VFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHEC 216
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+L M G R ++ + AC + G+ +HG+ ++ ++ V+++L+D
Sbjct: 217 LMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLID 276
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+KCG ++ G +F M ++ S+T MI+GLA G
Sbjct: 277 MYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHG 313
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G + L VF + + +++ +MI L I G +AL +++ M+ G PD
Sbjct: 274 LIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPD 333
Query: 79 KFTFPFVIKACIASLAIEKG 98
+ V+ AC + +++G
Sbjct: 334 DVVYVGVLSACSHAGLVKEG 353
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL N Q + K++ L + + ++D A VF QI P F WN ++R L + A++
Sbjct: 868 GLHNCQYAMSKVIRLYALH-QSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIV 926
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
Y G +PD TFPFV+KAC + A ++G+++H +K GF D+FV ++L+ LY
Sbjct: 927 FYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYA 986
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
CG + R +F++M V+ VVSW ++I G + L
Sbjct: 987 ACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRL 1022
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ ++A L+F Q+ C +V +W +I T +AL L M+ G P + T V
Sbjct: 558 WGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAV 617
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRS 144
I A I G+ ++G K G D V ++L+DLY K G V K+FD+M R+
Sbjct: 618 IPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRN 677
Query: 145 VVSWTTMISGLAASG 159
+VSWT++ISG A G
Sbjct: 678 LVSWTSIISGFAMHG 692
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
AL VF Q P W ++A + L+AL L+ D F F FV+KAC
Sbjct: 437 ALKVFDQSPAP----WRAFLKAYSHGPFPLEALHLFK-HARQHLADDTFVFTFVLKACAG 491
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
G ++H L V+ GF +V + L+++Y+ + RK+FD+M V++VVSW M
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551
Query: 152 ISGLAASGDLDAA 164
I+G A G+++ A
Sbjct: 552 ITGFAGWGEVEYA 564
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F QI + +W+ MI A + +L L+ M +PD V+ AC A
Sbjct: 1129 IFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGA 1188
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ GK +H + D ++++L+D++ KCG V ++F M + +SW ++I G
Sbjct: 1189 LDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILG 1248
Query: 155 LAASGDLDAA 164
LA +G D A
Sbjct: 1249 LANNGFEDEA 1258
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D + L+ L + G A VF+++ V +WN +I + +
Sbjct: 966 VIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEV 1025
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC-------IASLAIEKGKEVHGLAVKAGFSRDMFV 116
L L+ LM + DK T VI AC +A + + H D+++
Sbjct: 1026 LTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNH-------IEVDVYL 1078
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+TL+D Y + G + K+F +M+ ++ V+ MI+ A G+L +A
Sbjct: 1079 GNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSA 1126
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 14/169 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R + D ++ L+D+ + G AL VF+ + +WN +I L +G +A
Sbjct: 1199 VRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEA 1258
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
L +++ M+ G RP++ TF V+ AC +E+G K VH L + M
Sbjct: 1259 LDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQ------MKH 1312
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
++D+ + G ++ +M + V W ++ G++ A
Sbjct: 1313 YGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVA 1361
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ-IRCPHVFTWNLMIRALTIDGSSLQAL 64
+ G+ +D + L+DL + G ++L VF + + ++ +W +I + G S++AL
Sbjct: 639 KKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEAL 698
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L+ M G +P++ TF VI AC +E+G
Sbjct: 699 ELFAEMRRAGIKPNRITFLSVINACSHGGLVEQG 732
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 88/159 (55%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ +GL ++ + + CS + + HA +F +I P+ TWN M R +G
Sbjct: 34 QIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRD 93
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++L+ + P+ FTFP +IK+C + +G+EVH A K GF + FV ++L+D
Sbjct: 94 TVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLID 153
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y K G V+ K+F +M R+VV WT +I+G GD+
Sbjct: 154 MYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDV 192
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+ D + +L+ + G+ + VF ++ +VF+WN +I +G + L +
Sbjct: 235 NRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKR 294
Query: 70 MICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ G P+ FT V+ AC A++ GK VH A G+ ++FV + L+D+Y KCG
Sbjct: 295 MLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCG 354
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ +F+ + + ++SW T+I+GLA G
Sbjct: 355 VIENAVVVFNCLDRKDIISWNTIINGLAIHG 385
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
++G ++ + L+D+ S G + A VF ++ +V W +I + G +
Sbjct: 138 KHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRR 197
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L++L D + +I I S + +E+ +RD + +++ Y
Sbjct: 198 LFDL----APERDVVMWSVLISGYIESKNMAAAREL----FDKMPNRDTMSWNAMLNGYA 249
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G+V+ K+FD+M R+V SW +I G +G
Sbjct: 250 VNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNG 283
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G ++A++VF+ + + +WN +I L I G + AL +++ M G PD
Sbjct: 346 LIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPD 405
Query: 79 KFTFPFVIKAC 89
TF ++ AC
Sbjct: 406 GVTFVGILSAC 416
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L +L + +G+T HA VF+++ VF+WN+M+ G +AL LY+ M+ G
Sbjct: 125 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAG 184
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD +TFP V+++C G+EVH ++ GF ++ V + LM +Y KCGDV R
Sbjct: 185 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAAR 244
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD M V +SW MI+G +G+ +A
Sbjct: 245 KVFDSMTVMDCISWNAMIAGHFENGECNAG 274
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ +L++ + + D A+ VF + V +W+ MI + + +AL + M+ +
Sbjct: 427 VVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD 486
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+P+ TF + AC A+ A+ GKE+H ++ G + ++ + L+DLY+KCG
Sbjct: 487 -VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYA 545
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
F + VVSW MI+G A G D A
Sbjct: 546 WAQFCAHGAKDVVSWNIMIAGFVAHGHGDTA 576
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G + ++ L+ + + G A VF + +WN MI +G
Sbjct: 215 VLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAG 274
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ + +P+ T V A + KE+HGLAVK GF+ D+ ++L+ +
Sbjct: 275 LELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQM 334
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G + R +F +M R ++WT MISG +G D A
Sbjct: 335 YASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKA 375
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + D L+ + + G A VFS++ TW MI +G +AL
Sbjct: 317 VKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKAL 376
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y LM N PD T + AC +++ G ++H LA GF + V + ++++Y
Sbjct: 377 EVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMY 436
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K +D ++F M + VVSW++MI+G
Sbjct: 437 AKSKRIDKAIEVFKCMHEKDVVSWSSMIAGF 467
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ + L L+DL G+T +A F V +WN+MI G A
Sbjct: 517 VLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTA 576
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L +N M+ G PD+ TF ++ AC + +G E+ H + K ++ + ++D
Sbjct: 577 LSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVD 636
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
L + G + ++M + W +++G
Sbjct: 637 LLSRAGQLTEAYNFINEMPITPDAAVWGALLNG 669
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
II GL D LV + + +A VF ++ P WN +I++
Sbjct: 52 IIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSH 111
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + M +G PD FT+P VIKAC + +GK +HG A + G +D++V ++L+D
Sbjct: 112 TLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLID 171
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y KCG++ RK+FD M R+VVSWT M+ G A GD+
Sbjct: 172 MYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDV 210
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R++ ++++ ++K GD+ G R +FD M ++VVS+TTMI G A +GD+ AA
Sbjct: 223 RNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAA 275
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V W+ +I +G QAL ++ M +PD+F ++ A +E + V
Sbjct: 287 VVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDS 346
Query: 104 LAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
K + V + L+D+ KCG+++ K+FD+ R VV + +MI GL+ G +
Sbjct: 347 YVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGE 406
Query: 163 AA 164
A
Sbjct: 407 EA 408
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
++ LLD+ + G + AL +F + V + MI+ L+I G +A+ L+N M+ G
Sbjct: 360 VIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEG 419
Query: 75 FRPDKFTFPFVIKACIASLAIEKGK 99
PD+ F ++ AC + +++G+
Sbjct: 420 LTPDEVAFTVILTACSRAGLVDEGR 444
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G+ D + L+D+ G+ A VF + +V +W M+ G ++A
Sbjct: 156 RCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARK 215
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L++ M +K + L+ +G A +++ +T++D Y
Sbjct: 216 LFDEMPHRNVASWNSMLQGFVK--MGDLSGARG------VFDAMPEKNVVSFTTMIDGYA 267
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K GD+ R +FD + VV+W+ +ISG +G
Sbjct: 268 KAGDMAAARFLFDCSLEKDVVAWSALISGYVQNG 301
>gi|296085625|emb|CBI29414.3| unnamed protein product [Vitis vinifera]
Length = 350
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 83/147 (56%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL+ + G + A VF + V WN MI A + G+ +AL LY+ M G RP
Sbjct: 44 KLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRP 103
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D T+ V+KAC SL + G+E AV G+ D+FV + +++LY KCG +D ++F
Sbjct: 104 DSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVF 163
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
DKM R +V WTTMI+GLA +G A
Sbjct: 164 DKMGRRDLVCWTTMITGLAQNGQAREA 190
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ + G +D + +L+L + GK D A+ VF ++ + W MI L +G +
Sbjct: 129 RQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAR 188
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ +Y M D +I+AC + G +HG ++ D+ + L
Sbjct: 189 EAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIIMQVLG 248
Query: 122 DL 123
L
Sbjct: 249 KL 250
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 90/155 (58%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G ++ ++ L+++ + G + A +F ++ +V WN +I + G +AL
Sbjct: 349 IRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEAL 408
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G +PD F V+ AC LA+E+GK++HG +++GF ++ V + L+D+Y
Sbjct: 409 ALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIY 468
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG+V+ +K+F++M + VVSWTTMI G
Sbjct: 469 AKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 93/155 (60%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G+ +D L+V L+++ + G + A +F ++ V +WN +I +++ +AL
Sbjct: 248 IRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEAL 307
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+N M G +P+ T V+ AC A+E+G+++HG A+++GF + V + L+++Y
Sbjct: 308 AFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMY 367
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG+V+ K+F++M ++VV+W +ISG + G
Sbjct: 368 AKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHG 402
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 89/155 (57%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ II G +D ++ L + + G ++A VF ++ V +WN +I + +G
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ M NG +P+ T V+ C LA+E+GK++H A+++G D+ V + L+
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++Y KCG+V+ K+F++M +R V SW +I G +
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS 298
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 62/113 (54%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
W I +G +AL LY M G PDK F VIKAC + ++ G++VH +
Sbjct: 88 WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
GF D+ V + L +Y KCG ++ R++FD+M R VVSW +I+G + +G
Sbjct: 148 ARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200
Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G ++ ++ L+D+ + G + A +F ++ V +W MI A I G AL
Sbjct: 450 IRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDAL 509
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDL 123
L++ M G + D F ++ AC + +++G + + G + + + L+DL
Sbjct: 510 ALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDL 569
Query: 124 YLKCGDVDGGRKMFDKMRV 142
+ G +D + M +
Sbjct: 570 LGRAGHLDEANGIIKNMSL 588
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 83/147 (56%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL+ + G + A VF + V WN MI A + G+ +AL LY+ M G RP
Sbjct: 44 KLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRP 103
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D T+ V+KAC SL + G+E AV G+ D+FV + +++LY KCG +D ++F
Sbjct: 104 DSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVF 163
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
DKM R +V WTTMI+GLA +G A
Sbjct: 164 DKMGRRDLVCWTTMITGLAQNGQAREA 190
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 81/158 (51%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ + G +D + +L+L + GK D A+ VF ++ + W MI L +G +
Sbjct: 129 RQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAR 188
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ +Y M D +I+AC + G +HG ++ D+ VQ++L+
Sbjct: 189 EAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLV 248
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K G ++ +F +M ++V+SW+ +ISG A +G
Sbjct: 249 DMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNG 286
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR + D ++ L+D+ + G + A VF ++ +V +W+ +I +G + A
Sbjct: 232 MIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNA 291
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L M G++PD + V+ AC ++ GK VHG V+ D + ++D+
Sbjct: 292 LQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDM 350
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS--GLAASGD 160
Y KCG + R +FD++ R +SW +I+ G+ SG+
Sbjct: 351 YSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGE 389
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
++D+ S G A VF QI +WN +I + I GS +AL L+ M +PD
Sbjct: 347 VIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPD 406
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAV---KAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
TF ++ A S +EKG+ + V K S + + ++DL + G V+ ++
Sbjct: 407 HATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHY--ACMVDLLSRAGRVEEAQE 464
Query: 136 MFDKMRVRSVVS-WTTMISGLAASG 159
+ + M ++ W ++SG G
Sbjct: 465 LIESMITEPGIAIWVALLSGCLNHG 489
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
Query: 2 QKIIRYGLSN----DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+KI ++ L N D ++ KL L + A +F +I P V WN +IRA +
Sbjct: 28 KKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWN 87
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G A+ LY+ M+ G RP+K+T+PFV+KAC LAIE G E+H A G D+FV
Sbjct: 88 GPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVC 147
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L+D Y KCG + +++F M R VV+W MI+G + G D A
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+W+ MI +AL ++ +M +G PD T V+ AC A++ G HG
Sbjct: 240 SWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 299
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ GF+ D + + L+D+Y KCG + R++F++M +VSW MI G G
Sbjct: 300 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG 353
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + D L+ L+D+ S GK A VF+++ + +WN MI I G ++A
Sbjct: 299 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 358
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
L L++ ++ G +PD TF ++ +C S + +G+
Sbjct: 359 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR 394
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K + +++ACI S ++ + K++H +K + D V L LYL C V R++FD
Sbjct: 8 KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ SV+ W +I A +G D A
Sbjct: 68 EIPNPSVILWNQIIRAYAWNGPFDGA 93
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 54/152 (35%), Gaps = 38/152 (25%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+GL +D + L+D + G A +FS + V WN MI ++ G A+ L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M G P+ T V+ C L
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTCQCLLY-------------------------------- 225
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
RK+FD M VR+ VSW+ MI G AS
Sbjct: 226 ------ARKIFDVMGVRNEVSWSAMIGGYVAS 251
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 4/160 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL + + L+ KLL L +A +F QI P V+ +N I+ + G +
Sbjct: 12 LRNGLDHTKFLIEKLLQLPDL----PYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCW 67
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LLY M G P++++F F+ AC + + G+ +H K+GF+ DMF + L+D+Y
Sbjct: 68 LLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMY 127
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G + R++FD+M VR + +W ++I+G A SG ++AA
Sbjct: 128 AKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAA 167
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 12 DQLLVRKLL---DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ VR + L + Y ++ H AL +F+++ +V +W +I +G +AL
Sbjct: 141 DEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALE 200
Query: 66 LY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ L G +P++ + V+ AC A++ GK + A GF ++ +V + +++L+
Sbjct: 201 MFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELH 260
Query: 125 LKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159
+CG+++ +++FD++ R++ SW TMI GLA G
Sbjct: 261 ARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHG 296
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLL 66
G + + +L+L + G + A VF +I ++ +WN MI L + G + AL L
Sbjct: 245 GFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQL 304
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYL 125
Y+ M+ RPD TF ++ AC + +G+++ + K + + L+DL
Sbjct: 305 YDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLG 364
Query: 126 KCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ G++ + M + V W T++ + G+++
Sbjct: 365 RAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVE 402
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 85/149 (57%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+ + S G + A VF + V +WN MI + G +A L+ M
Sbjct: 134 DIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQ 193
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G +P++ TF ++ AC + +A+E G+++H KAG+ D+ V + L+++Y KCG ++
Sbjct: 194 REGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLE 253
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGD 160
RK+F++MR R+VVSWT MISG GD
Sbjct: 254 LARKVFNEMRERNVVSWTAMISGYVQHGD 282
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL + L+ L+ + S G +A VF +R + TWN MI +G +A
Sbjct: 328 IKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYG-EGLMEEA 386
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M GF+PDKFT+ ++ C +++GKE+H G+ D+ V + L+ +
Sbjct: 387 FRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISM 446
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y KCG + RK+F++M R+V+SW IS
Sbjct: 447 YAKCGSPEEARKVFNQMPERNVISWNAFIS 476
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 83/152 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + G +D + L+++ G + A VF+++R +V +W MI G S +
Sbjct: 226 RIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSRE 285
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ +I +G +P+K +F ++ AC + +G ++H +AG +++ V + L+
Sbjct: 286 ALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALIS 345
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y +CG + R++FD +R + +W MI+G
Sbjct: 346 MYSRCGSLANARQVFDNLRSLNRTTWNAMIAG 377
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D ++ L+ + S G A VFS ++ V WN M+ A AL L+
Sbjct: 634 GFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLF 693
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G PD T+ + AC A+E GK++H +AG D V ++L+++Y +C
Sbjct: 694 QQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRC 753
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + +++F+KM R + SW +I+G +G + A
Sbjct: 754 GCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIA 790
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI ++G+ ++ + L+ + G A VF +IR + +WN MI A G++
Sbjct: 528 KINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGS 587
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L+ G + DK+TF V++A ++ G+ +HGL K GF +D+ V +TL+
Sbjct: 588 AFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIK 647
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+Y KCG + +F ++ + VV W M++ A S
Sbjct: 648 MYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHS 683
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I G D + L+ + + G + A VF+Q+ +V +WN I +
Sbjct: 427 QIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKE 486
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A + M + PD TF ++ +C + +E+G+ +HG + G + V + L+
Sbjct: 487 AFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANALIS 546
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG++ R++F ++R R + SW MI+ G
Sbjct: 547 MYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHG 583
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++ C+ + ++ +GK+VH A F D+++ + L+ +Y KCG ++ +F M + V
Sbjct: 107 LQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDV 166
Query: 146 VSWTTMISGLAASG-DLDAA 164
VSW MISG A G D +AA
Sbjct: 167 VSWNAMISGYALHGRDQEAA 186
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I G +++ +R+L+ S G +A +F I P F WN MIR S L
Sbjct: 36 MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 95
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY+ M RPDKFTFPFV+KAC ++ G VHG + GF + FV++TL+
Sbjct: 96 NAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI 155
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ CGD+ R +FD R VV+W+ + +G A G+L A
Sbjct: 156 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVA 198
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F ++ V TWN MI + GS+ QAL ++ M G PD+ T ++
Sbjct: 224 GEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLL 283
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
AC ++ G+ +H + GF RD+ V + L+D+Y KCG + ++F MR +
Sbjct: 284 SACTDLGDLDAGQRIHCCISEMGF-RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKD 342
Query: 145 VVSWTTMISGLAASGDLDAA 164
V +W +++ GLA G + +
Sbjct: 343 VSTWNSVLGGLAFHGHAEKS 362
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
LL L+D+ + G AL VF +R V TWN ++ L G + +++ L+ M
Sbjct: 313 LLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKL 372
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDG 132
RPD+ TF V+ AC + +E+G++ L + ++ ++DL + G ++
Sbjct: 373 KIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNE 432
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
D M++ + + W T++ G+++
Sbjct: 433 AFDFIDTMKIEPNAIVWRTLLGACRIHGNVE 463
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 8/148 (5%)
Query: 16 VRKLLDLCSFYGKTD---HALLVFSQ---IRCPHVFTWNLMIRALTIDGSSLQALLLY-N 68
+ KL+ C G + +AL F + +C ++T N +IR G +A+ +Y +
Sbjct: 53 INKLIAACVQMGTHESLNYALNAFKEDEGTKCS-LYTCNTLIRGYAASGLCKEAIFIYLH 111
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
++I G PD FTFPF++ AC +A +G +VHG+ VK G +D+FV ++L+ Y CG
Sbjct: 112 MIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACG 171
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLA 156
VD GRK+FD+M R+VVSWT++I+G +
Sbjct: 172 KVDLGRKVFDEMLERNVVSWTSLINGYS 199
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 80/157 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ ++ L+V LLD+ G +F + ++ +N ++ G + + L++
Sbjct: 253 GVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVL 312
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M+ G RPDK T I AC + GK H + G R + + ++D+Y+KC
Sbjct: 313 DEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKC 372
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + K+FD M ++VV+W ++I+GL G+L+ A
Sbjct: 373 GKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELA 409
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+ + GK D VF ++ +V +W +I ++ + +A
Sbjct: 148 VVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G P+ T I AC +E GK+V L + G + V + L+D+
Sbjct: 208 VCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDM 267
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KCGD+ R++FD+ +++V + T++S G
Sbjct: 268 YMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHG 303
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + AL +F ++ ++ +WN MI A+ +A+ L M G + D+ T +
Sbjct: 404 GELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIA 463
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ K ++ K DM + + L+D++ +CGD ++F+ M R V
Sbjct: 464 SACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVS 523
Query: 147 SWTTMISGLAASGDLDAA 164
+WT I A G+ A
Sbjct: 524 AWTAAIRVKAVEGNAKGA 541
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ S G +A+ VF + V W IR ++G++ A+ L++ M+
Sbjct: 490 DMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEML 549
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDV 130
+ D F F ++ A +++G+++ K G S + ++DL + G +
Sbjct: 550 KQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLL 609
Query: 131 DGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ + M ++ + V W + ++ +++ A
Sbjct: 610 EEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFA 644
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G L ++ + T + L+F+QI+ P V +N MIR L ++
Sbjct: 39 LLRLGFDQGSYLWSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTES 98
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y M GF P+ FTFPFVIKAC L + G +H L VK GF ++FV ++L+ L
Sbjct: 99 IEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSL 158
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +D KM D + ++VSWT +ISG G A
Sbjct: 159 YAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREA 199
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + + L+ L + G D AL + I ++ +W +I G +A
Sbjct: 140 VVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREA 199
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G RPD FT V+ ACI + G+ + + +R++FV ++L+DL
Sbjct: 200 IDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDL 259
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G+++ R +FD M R +VSW+ MI G A++G
Sbjct: 260 YAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNG 295
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
++ + + L+DL + +G + A +F + + +W+ MI+ +G AL L+
Sbjct: 246 MARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFF 305
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ G +PD + + AC A+E G L + F + + + L+D+Y KCG
Sbjct: 306 KMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAKCG 365
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++F ++ + W ISGLA +G AA
Sbjct: 366 SMAKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAA 401
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 81/134 (60%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A +FS+I P+ + WN +IRA + AL +++ M+ PDK+TF F +K+C
Sbjct: 60 YAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCG 119
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ +E+G+++HG +K G D+F+Q+TL+ LY CG ++ R + D+M R VVSW
Sbjct: 120 SFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNA 179
Query: 151 MISGLAASGDLDAA 164
++S A G ++ A
Sbjct: 180 LLSAYAERGLMELA 193
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 70/133 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF + +V +WN MI + G + L+L+ M G +PD T V+
Sbjct: 219 GLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVL 278
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+ +G+ VH K G S D FV + L+D+Y KCG ++ ++F+ + +
Sbjct: 279 SACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDIS 338
Query: 147 SWTTMISGLAASG 159
+W ++ISGL+ G
Sbjct: 339 TWNSIISGLSTHG 351
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+S D + L+D+ S G + AL VF+ + TWN +I L+ GS A
Sbjct: 297 IDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHA 356
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
L +++ M+ GF+P++ TF V+ AC + +++G+E+ L V G + ++D
Sbjct: 357 LQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVD 416
Query: 123 LYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
L + G ++ ++ KM + + V W +++ G+++ A
Sbjct: 417 LLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELA 459
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 81/134 (60%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A +FS+I P+ + WN +IRA + AL +++ M+ PDK+TF F +K+C
Sbjct: 60 YAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCG 119
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ +E+G+++HG +K G D+F+Q+TL+ LY CG ++ R + D+M R VVSW
Sbjct: 120 SFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNA 179
Query: 151 MISGLAASGDLDAA 164
++S A G ++ A
Sbjct: 180 LLSAYAERGLMELA 193
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 67/125 (53%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF + +V +WN MI + G + L+L+ M G +PD T V+ AC A
Sbjct: 197 VFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGA 256
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ +G+ VH K G S D FV + L+D+Y KCG ++ ++F+ + + +W ++ISG
Sbjct: 257 LSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISG 316
Query: 155 LAASG 159
L+ G
Sbjct: 317 LSTHG 321
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+S D + L+D+ S G + AL VF+ + TWN +I L+ GS A
Sbjct: 267 IDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHA 326
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
L +++ M+ GF+P++ TF V+ AC + +++G+E+ L V G + ++D
Sbjct: 327 LQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVD 386
Query: 123 LYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
L + G ++ ++ KM + + V W +++ G+++ A
Sbjct: 387 LLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELA 429
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
Query: 2 QKIIRYGLSN----DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+KI ++ L N D ++ KL L + A +F +I P V WN +IRA +
Sbjct: 28 KKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWN 87
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G A+ LY+ M+ G RP+K+T+PFV+KAC LAIE G E+H A G D+FV
Sbjct: 88 GPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVC 147
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L+D Y KCG + +++F M R VV+W MI+G + G D A
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G D LL LL + + G D A+ F + +++ ++ +G++ A
Sbjct: 338 IIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVA 397
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ +M +G PD T V+ AC A++ G HG + GF+ D + + L+D+
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R++F++M +VSW MI G G
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG 493
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+GL +D + L+D + G A +FS + V WN MI ++ G A+ L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M G P+ T V+ + A+ GK +HG V+ F + V + L+D+Y K
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAK 257
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
C + RK+FD M VR+ VSW+ MI G S
Sbjct: 258 CQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+R N ++ LLD+ Y K +A +F + + +W+ MI
Sbjct: 237 VRRSFDNGVVVGTGLLDM---YAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMK 293
Query: 62 QALLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL L++ MI + P T V++AC + +G+++H +K G D+ + +TL
Sbjct: 294 EALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTL 353
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y KCG +D + FD M + VS++ ++SG +G+ A
Sbjct: 354 LSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVA 397
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + D L+ L+D+ S GK A VF+++ + +WN MI I G ++A
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 498
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
L L++ ++ G +PD TF ++ +C S + +G+
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR 534
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K + +++ACI S ++ + K++H +K + D V L LYL C V R++FD
Sbjct: 8 KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ SV+ W +I A +G D A
Sbjct: 68 EIPNPSVILWNQIIRAYAWNGPFDGA 93
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 4/160 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL + + L+ KLL L +A +F QI P V+ +N I+ + G +
Sbjct: 12 LRNGLDHTKFLIEKLLQLPDL----PYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCW 67
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LLY M G P++++F F+ AC + + G+ +H K+GF+ DMF + L+D+Y
Sbjct: 68 LLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMY 127
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G + R++FD+M VR + +W ++I+G A SG ++AA
Sbjct: 128 AKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAA 167
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 12 DQLLVRKLL---DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ VR + L + Y ++ H AL +F+++ +V +W +I +G +AL
Sbjct: 141 DEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALE 200
Query: 66 LY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ L G +P++ + V+ AC A++ GK + A GF ++ +V + +++L+
Sbjct: 201 MFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELH 260
Query: 125 LKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159
+CG+++ +++FD++ R++ SW TMI GLA G
Sbjct: 261 ARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHG 296
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLL 66
G + + +L+L + G + A VF +I ++ +WN MI L + G + AL L
Sbjct: 245 GFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQL 304
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYL 125
Y+ M+ RPD TF ++ AC + +G+++ + K + + L+DL
Sbjct: 305 YDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLG 364
Query: 126 KCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ G++ + M + V W T++ + G+++
Sbjct: 365 RAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVE 402
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 15/164 (9%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ K+ R LS +Q+++ + L F +I P V WN +IRA +G
Sbjct: 46 LHKLTRLYLSCNQVVLARRL---------------FDEIPNPSVILWNQIIRAYAWNGPF 90
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A+ LY+ M+ G RP+K+T+PFV+KAC LAIE G E+H A G D+FV + L
Sbjct: 91 DGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTAL 150
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D Y KCG + +++F M R VV+W MI+G + G D A
Sbjct: 151 VDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G D LL LL + + G D A+ F ++ +++ ++ +G++ A
Sbjct: 338 IIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVA 397
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ +M +G PD T V+ AC A++ G HG + GF+ D + + L+D+
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R++F++M +VSW MI G G
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG 493
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+GL +D + L+D + G A +FS + V WN MI ++ G A+ L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M G P+ T V+ + A+ GK +HG V+ F + V + L+D+Y K
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAK 257
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
C + RK+FD M VR+ VSW+ MI G AS
Sbjct: 258 CQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+R N ++ LLD+ Y K +A +F + + +W+ MI
Sbjct: 237 VRRSFDNGVVVGTGLLDM---YAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMK 293
Query: 62 QALLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL L++ MI + P T V++AC + +G+++H +K G D+ + +TL
Sbjct: 294 EALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTL 353
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y KCG +D + FD+M + VS++ ++SG +G+ A
Sbjct: 354 LSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVA 397
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + D L+ L+D+ S GK A VF+++ + +WN MI I G ++A
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 498
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
L L++ ++ G +PD TF ++ +C S + +G+
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR 534
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K + +++ACI S ++ + K++H +K + D V L LYL C V R++FD
Sbjct: 8 KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ SV+ W +I A +G D A
Sbjct: 68 EIPNPSVILWNQIIRAYAWNGPFDGA 93
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 8 GLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G +D +R+L+ S G T HA LVF +I P F +N +IR + A+
Sbjct: 35 GFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVS 94
Query: 66 LYNLMICN------GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+Y M + G RPDK TFPFV++AC A A E G +VH VKAG D FV++
Sbjct: 95 IYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNA 154
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ ++ CGD+ +FD V+W+ MISG A GD+ AA
Sbjct: 155 LIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAA 199
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI GS QA+ L+ M G +PD T ++ AC S ++ G+ +H
Sbjct: 242 VVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHR 301
Query: 104 LAVKAGFSR---DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+ FSR + + L+D+Y KCG + ++F M+ ++V +W ++I GLA G
Sbjct: 302 F-LSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGH 360
Query: 161 LDAA 164
+ A
Sbjct: 361 VTEA 364
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G AL VF ++ +V TWN +I L + G +A+ ++ M+
Sbjct: 315 VLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQG 374
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
+PD+ TF V+ AC ++KG E L + ++ ++D+ + G +
Sbjct: 375 NVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKE 434
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ M++ + V W T++ G+L+ A
Sbjct: 435 AFEFIGTMKIEPNPVIWRTLLGACRIHGELELA 467
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I G +++ +R+L+ S G +A +F I P F WN MIR S L
Sbjct: 1 MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY+ M RPDKFTFPFV+KAC ++ G VHG + GF + FV++TL+
Sbjct: 61 NAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI 120
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ CGD+ R +FD R VV+W+ + +G A G+L A
Sbjct: 121 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVA 163
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F ++ V TWN MI + GS+ QAL ++ M G PD+ T ++
Sbjct: 189 GEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLL 248
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
AC ++ G+ +H + GF RD+ V + L+D+Y KCG + ++F MR +
Sbjct: 249 SACTDLGDLDAGQRIHCCISEMGF-RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKD 307
Query: 145 VVSWTTMISGLAASGDLDAA 164
V +W +++ GLA G + +
Sbjct: 308 VSTWNSVLGGLAFHGHAEKS 327
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
LL L+D+ + G AL VF +R V TWN ++ L G + +++ L+ M
Sbjct: 278 LLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKL 337
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDG 132
RPD+ TF V+ AC + +E+G++ L + ++ ++DL + G ++
Sbjct: 338 KIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNE 397
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
D M++ + + W T++ G+++
Sbjct: 398 AFDFIDTMKIEPNAIVWRTLLGACRIHGNVE 428
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 85/157 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ G +D + L+ + + G VF ++ + WN MI L G +
Sbjct: 252 RILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEE 311
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A +YN M G P+K T+ ++ AC+ S A+ GKE+H KAGF+ D+ VQ+ L+
Sbjct: 312 ASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALIS 371
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG + R +FDKM + V+SWT MI GLA SG
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSG 408
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G ++D + L+ + S G A LVF ++ V +W MI L G +
Sbjct: 353 RVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAE 412
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +Y M G P++ T+ ++ AC + A+E G+ +H V+AG + D V +TL++
Sbjct: 413 ALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVN 472
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+Y CG V R++FD+M R +V++ MI G AA
Sbjct: 473 MYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAA 507
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGS 59
Q II++ DQ V L+++ G + A V+ ++ V +WN M+ G
Sbjct: 47 QHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGY 106
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL L M +G PD+ T + +C + A+E G+E+H A++AG D+ V +
Sbjct: 107 IEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANC 166
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++Y KCG ++ R++FDKM +SVVSWT I G A G + A
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETA 211
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+++ GL+ D + L+++ S G A VF ++ + +N MI
Sbjct: 453 QQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGK 512
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ + G +PDK T+ ++ AC S ++E +E+H L K GF D V + L+
Sbjct: 513 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALV 572
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +F+KM R+V+SW +I G A G
Sbjct: 573 STYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHG 610
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ GL D + +L++ + G + A VF ++ V +W + I G S
Sbjct: 151 QAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSET 210
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M G P++ T+ V+ A + A++ GK VH + AG D V + L+
Sbjct: 211 AFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVK 270
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG R++F+K+ R +++W TMI GLA G + A
Sbjct: 271 MYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEA 312
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G + + + ++K CI + G++VH ++ D + + L+++Y++CG ++
Sbjct: 17 QGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEE 76
Query: 133 GRKMFDKMRV--RSVVSWTTMISGLAASGDLDAA 164
R+++ K+ R+V SW M+ G G ++ A
Sbjct: 77 ARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKA 110
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 12/164 (7%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D + L+ + G A +VF ++ +V +WN +I G AL L+
Sbjct: 560 GFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLF 619
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------LM 121
M G +PD TF ++ AC + +E+G+ S+D + T ++
Sbjct: 620 ERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYF-----CSMSQDFAIIPTIEHYGCMV 674
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + G +D + M ++ W ++ G++ A
Sbjct: 675 DLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVA 718
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 100/200 (50%), Gaps = 43/200 (21%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG------ 58
I + L+ +LL K L L S + +A FSQI P+ F+WN +IRAL
Sbjct: 44 IHHPLAAAELL--KFLTL-STQREIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFH 100
Query: 59 -SSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+SL+ALL ++ M+ +G P+KFTFP V+KAC IE+GK++HG VK G D FV
Sbjct: 101 VNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFV 160
Query: 117 QSTLMDLYLKC--------------------------------GDVDGGRKMFDKMRVRS 144
+S L+ +Y+ C GD+ R++FD M +S
Sbjct: 161 RSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKS 220
Query: 145 VVSWTTMISGLAASGDLDAA 164
VVSW MISG A +G A
Sbjct: 221 VVSWNVMISGCAQNGHFKEA 240
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN+MI +G +A+ +++ M P+ T V+ A AIE GK VH
Sbjct: 221 VVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHL 280
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASG 159
A K D + S L+D+Y KCG +D ++F+ +R ++ ++W+ +I GLA G
Sbjct: 281 FAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHG 337
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLM 70
D +L L+D+ S G D A+ VF IR + TW+ +I L + G + AL + M
Sbjct: 290 DDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRM 349
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGD 129
G P + V+ AC + +E+G+ ++ V G + ++DL + G
Sbjct: 350 QQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGC 409
Query: 130 VDGGRKMFDKMRVR 143
++ ++ M V+
Sbjct: 410 LEEAEQLILNMPVK 423
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 13/169 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFT-WNLMIRALT-- 55
QKI+ GL N+ L + L++L C + A LVF I P T WN ++ A T
Sbjct: 27 QKIVSLGLQNNITLCKSLINLYFSCHLF---QSAKLVFQTIENPLDITLWNGLMAACTKN 83
Query: 56 ---IDG-SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS 111
I+G +AL L+ M +GF+PD T VI +C L +E+GKE+H V++GF+
Sbjct: 84 FIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFA 143
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D FV S L+D+Y KCG ++ +++F++++ ++VVSW +MI+G + GD
Sbjct: 144 LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 192
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G + D + L+D+ G + A VF QI+ +V +WN MI ++ G S
Sbjct: 136 ELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKS 195
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G RP T ++ AC S+ ++ GK +HG ++ D+FV S+L+D
Sbjct: 196 CIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLID 255
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG++ +F M +VVSW MISG G
Sbjct: 256 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 292
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR + D + L+DL G A VF + +V +WN+MI GS L+A
Sbjct: 238 IIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEA 297
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108
L+++ M G +PD TF V+ AC +EKGKE+H +++
Sbjct: 298 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 342
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND L R L D AL +F ++ F WN+MI+ T G ++A+ Y+ M
Sbjct: 63 NDPALTRALRGFADSRLMED-ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRM 121
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ G + D FT+PFVIK+ ++E+GK++H + +K GF D++V ++L+ LY+K G
Sbjct: 122 VFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCA 181
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K+F++M R +VSW +MISG A GD
Sbjct: 182 WDAEKVFEEMPERDIVSWNSMISGYLALGD 211
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 83/155 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G +L L+D+ G+ A ++F ++ +V +WN +I A +G + AL
Sbjct: 357 MRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSAL 416
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + + PD T ++ A SL++ +G+E+H VK+ + + + ++L+ +Y
Sbjct: 417 ELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMY 476
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CGD++ RK F+ + ++ VVSW ++I A G
Sbjct: 477 AMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHG 511
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+ D +++ +LD+ S YG+ +A +F+ + ++ WN+MI +G A L +
Sbjct: 264 TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQK 323
Query: 70 MI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M NG +PD T ++ A AI +G+ +HG A++ GF M +++ L+D+Y +CG
Sbjct: 324 MSEQNGLQPDVITSINLLPAS----AILEGRTIHGYAMRRGFLPHMVLETALIDMYGECG 379
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +FD+M ++V+SW ++I+ +G
Sbjct: 380 QLKSAEVIFDRMAEKNVISWNSIIAAYVQNG 410
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G +D + L+ L G A VF ++ + +WN MI G +
Sbjct: 156 VIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSS 215
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMD 122
L+L+ M+ GF+PD+F+ + AC + + GKE+H AV++ D+ V ++++D
Sbjct: 216 LMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILD 275
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G+V ++F+ M R++V+W MI A +G + A
Sbjct: 276 MYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDA 317
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ ++ +++ L+ + + G + A F+ I V +WN +I A + G +
Sbjct: 457 IVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRIS 516
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L++ MI + P+K TF ++ AC S +++G E + + G + ++D
Sbjct: 517 VWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLD 576
Query: 123 LYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
L + G+ ++ ++M V + W ++++ D+ A
Sbjct: 577 LIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIA 619
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
F WN +IR +I G L +YN M+ G RPD TFPFV+KAC + + KG+EVHG
Sbjct: 8 FLWNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGX 66
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VK GF D+FV +TL+ Y CG + ++FD+M + +VSW TMI + +G
Sbjct: 67 VVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNG 121
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I G + D + L D+ + G A VF V ++N++I + +
Sbjct: 370 RSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLRDEV-SYNILIVGXSQTSDCSE 428
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L L++ M G + D +F + AC AI++GKE+HG ++ F +FV ++L+D
Sbjct: 429 SLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLD 488
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R +FD+M + V SW TMI G G+LD A
Sbjct: 489 FYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTA 530
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL ++ LLD+ G VF ++ ++ +WN +I + G A
Sbjct: 169 VVKVGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMVEKNLVSWNAIITSFGYKGHYRDA 228
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ LMI G +P+ T + + + G+EVHG +++ G D+F+ ++L+D+
Sbjct: 229 LDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDM 288
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y K G +F K+ ++VVSW MI+ A +
Sbjct: 289 YAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQN 323
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL +D + L+D+ + G + A VF ++ +V +WN MI + L A+
Sbjct: 271 IRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAV 330
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M G P+ TF V+ AC + GKE+H ++ G + D+FV + L D+Y
Sbjct: 331 GLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMY 390
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K G + R +FD +R VS+ +I G + + D
Sbjct: 391 AKSGHLKLARNVFDT-SLRDEVSYNILIVGXSQTSD 425
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +D + LL G A VF ++ + +WN MI +++G +
Sbjct: 67 VVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGCWXEV 126
Query: 64 LLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M + +G RP+ + V+ C E+HG VK G + V + L+D
Sbjct: 127 LDLFGEMRLRSGLRPNVVSVVSVLPVCAGVEDEVTASEIHGYVVKVGLEFQVIVGNALLD 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG+V +++F +M +++VSW +I+ G
Sbjct: 187 VYGKCGNVAALKQVFGEMVEKNLVSWNAIITSFGYKG 223
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 91/157 (57%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D+ + L+ + S +G+ D A +VF I +W +M+ ALT +G S +
Sbjct: 459 RVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVMLVALTQNGHSHE 518
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +Y+ + GFRP F + +C A + + + +HG+ + F D+ + + LM+
Sbjct: 519 ALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMN 578
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG+++ R +FD+M ++ VSWTTMI G A +G
Sbjct: 579 VYAKCGELEKARLVFDQMTEKNEVSWTTMIGGYAQNG 615
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDG 58
+ +I GL D +L +L L + G +F R PH V TW MI A G
Sbjct: 258 IHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFD--RMPHRTVVTWTTMIAAYNQRG 315
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
S++AL LY+ C PD V++AC +E+G+ VH F + VQ+
Sbjct: 316 YSMEALELYH---CMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQT 372
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
L+D+Y+KCGD+ R+ FD + R V+SWT++I+ +
Sbjct: 373 LLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYS 410
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ D++L L+ + G + A VF IR + F+W MI A +G +A+ ++
Sbjct: 161 IQADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFG 220
Query: 69 LMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA---GFSRDMFVQSTLMDLY 124
M+ G PD T+ V+ AC +E G +H L + G D +Q ++ L+
Sbjct: 221 DMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHALIHRIYTLGLEYDDVLQDGILSLH 280
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CG + G R+MFD+M R+VV+WTTMI+ G
Sbjct: 281 ARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRG 315
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
MI A G +AL LY M G P+ TF V+ AC +E+GK+VH ++
Sbjct: 1 MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESV 60
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D +Q+ L++LY KCGD++ R++F+ M R+V +W TMI+
Sbjct: 61 ARVDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITA 105
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 1/147 (0%)
Query: 14 LLVRKLL-DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
L+V+ LL D+ G A F + V +W +I A + + +AL +++ M
Sbjct: 368 LMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYSHENFGREALEVFHSMEL 427
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G P+ TF VI AC ++ G+ +H V G D FV + L+ +Y K G VD
Sbjct: 428 EGVEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDF 487
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FD + V+ SW M+ L +G
Sbjct: 488 ARMVFDSIPVKRYPSWRVMLVALTQNG 514
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L LL+L + G + + +F + V TWN MI A +AL + M
Sbjct: 64 DTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRMD 123
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL--AVKAGFSRDMFVQSTLMDLYLKCGD 129
P TF V+ AC + +E GK +H D +Q++L+ +Y KCG
Sbjct: 124 AP---PSSITFTSVLGACCSPDDLETGKAIHRQIGGSSPQIQADEILQNSLVTMYGKCGS 180
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ ++F +R ++ SWT MI+ A +G
Sbjct: 181 LEDAERVFHGIRRKNAFSWTAMITAYAQNG 210
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+++ + G+ + A LVF Q+ + +W MI +G +AL LY M
Sbjct: 569 DLVLSNVLMNVYAKCGELEKARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAM- 627
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+P+ F VI +C A+ +G+ VH AG + + + L+++Y KCG +
Sbjct: 628 --DVQPNFIAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLG 685
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
R+ FD +W +M + A G
Sbjct: 686 LAREFFDSTYCPDAGAWNSMATAYAQFG 713
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL N++++V L+++ + GK A F CP WN M A G Q L LY
Sbjct: 663 GLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSMATAYAQFGHGSQVLELY 722
Query: 68 NLMICNGFRPDKFTFPFVIKAC 89
M G +P+ T V+ AC
Sbjct: 723 REMCLQGVQPNGITLLSVLVAC 744
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +I G D L KL+++ S D+A VF + R ++ WN + RALT+ G
Sbjct: 102 RHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGR 161
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
+ L LY M G D+FT+ +V+KAC+AS A + G+E+HG ++ GF + +
Sbjct: 162 EVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIM 221
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TL+D+Y + G V ++FD+M V++VVSW+ MI+ + +G
Sbjct: 222 TTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNG 263
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R+G ++ LLD+ + +G +A VF Q+ +V +W+ MI + +G L+A
Sbjct: 209 ILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEA 268
Query: 64 LLLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L+ M+ P+ T V++AC A A+E+GK +HG ++ G + V S L+
Sbjct: 269 LELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALV 328
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG+++ G ++F++M R VVSW ++IS G
Sbjct: 329 TVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHG 366
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L G+ QAL + + P + T+ +I +C ++ +G ++H +
Sbjct: 51 NPLIQSLCKQGNLNQALQV----LSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D F+ + L+++Y + +D RK+FDK R R++ W + L +G
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAG 158
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL + +V L+ + + G + VF ++ V +WN +I + I G +A
Sbjct: 312 ILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKA 371
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ----ST 119
+ ++ MI G P +F V+ AC + +E+GK + V+ +F +
Sbjct: 372 IQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRG---HKIFPSVEHYAC 428
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRS 144
++DL + +D K+ D MR+
Sbjct: 429 MVDLLGRANRLDEAAKIIDDMRIEP 453
>gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa]
gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 92/161 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++YG + ++ L+D+ G + +F +I P+ TWN+++R G +A
Sbjct: 184 IVKYGFCGNVIVGSSLVDVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRYLEVGDENEA 243
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++++ M RP +TF + AC A+++G ++HG+A K F + V S+L+D+
Sbjct: 244 VVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATKINFEEEEVVLSSLIDM 303
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KCG+++ R++FD R ++SWT+M+S A SG + A
Sbjct: 304 YVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREA 344
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQ 62
I R+G ++ ++ LLD+ G A + F Q++ +WN+++ + S Q
Sbjct: 417 IYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTSYARRQMSEQ 476
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ ++ M +P KF F ++ AC + A+++GK++HG ++ G+ D + L+D
Sbjct: 477 AMSIFREMQWET-KPHKFIFATLLAACANTFALDQGKQIHGFMIRNGYDIDTVIAGALLD 535
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC ++ +F + R +V W +MI G G
Sbjct: 536 MYSKCRCLEYALIVFREADKRDLVLWNSMILGCCHLG 572
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN MIRA +AL + M G ++ TF ++AC L + +++HGL
Sbjct: 125 SWNAMIRACLQCVRPEKALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQIHGLI 184
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VK GF ++ V S+L+D+Y KCG + R++FD++ + V+W ++ GD + A
Sbjct: 185 VKYGFCGNVIVGSSLVDVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRYLEVGDENEA 243
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA-- 63
+ +++++ L+D+ G+ + A VF + +W M+ A + G +A
Sbjct: 287 KINFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREARE 346
Query: 64 ---------LLLYNLMICNGFRP--------------------DKFTFPFVIKACIASLA 94
++ YN ++ R D TF ++ C
Sbjct: 347 LFDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSD 406
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMIS 153
++ GK+VHG + G+ + + + L+D+Y KCG++ F +M+ R VSW +++
Sbjct: 407 VDMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLT 466
Query: 154 GLA 156
A
Sbjct: 467 SYA 469
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G D ++ LLD+ S ++AL+VF + + WN MI G A
Sbjct: 518 MIRNGYDIDTVIAGALLDMYSKCRCLEYALIVFREADKRDLVLWNSMILGCCHLGRGKLA 577
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI 90
L L+ M G +PD TF ++ AC+
Sbjct: 578 LRLFGFMEEEGTKPDNVTFQGILLACV 604
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 77 PDKFTFPF---VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
PD F + + + C +SLAI + ++V + A + F+ + +D Y KC ++
Sbjct: 52 PDCFAYSLYAHLFQVCSSSLAIVEARKVESQLLGACPTPPTFLLNRAIDTYGKCRCLEDA 111
Query: 134 RKMFDKMRVRSVVSWTTMI 152
+++FD+M R SW MI
Sbjct: 112 KELFDEMPQRDGGSWNAMI 130
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ L +D ++ K ++ CS T HA +F QI P + +N M R + L
Sbjct: 44 IKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPL 103
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A L+ ++ +G PD +TFP ++KAC + A+E+G+++H LA+K G S +++V TL+
Sbjct: 104 RAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLI 163
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y C ++D R++FDK+ VV++ MI+G A + A
Sbjct: 164 NMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEA 206
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GLS + + L+++ + + D A VF +I P V T+N MI +AL
Sbjct: 148 IKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEAL 207
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + +P T V+ +C A++ GK +H K GF+R + V + L+D+Y
Sbjct: 208 SLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMY 267
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D +F+ M VR +W+ MI A G
Sbjct: 268 AKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHG 302
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D A+ VF + W+ MI A I G L+A+ L+ M G PD
Sbjct: 263 LIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPD 322
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++ AC + +E+G E +G+ K G + ++DL + G ++ +
Sbjct: 323 EITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFI 382
Query: 138 DKMRVRSV-VSWTTMISGLAASGDLD 162
+ +R + W T++S + G+++
Sbjct: 383 VGLPIRPTPILWRTLLSACGSHGNVE 408
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 8/163 (4%)
Query: 10 SNDQL-LVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTI-----DGSSL 61
+ DQ L+ +LL +CSF YG +A VF I+ P + +N+MIRA D
Sbjct: 49 TGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFC 108
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL+LY M C P+ TFPF++K C L G+ +H +K GF +D++V ++L+
Sbjct: 109 KALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLI 168
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY+ G + RK+FD+M V VV+W +M+ G +G LD A
Sbjct: 169 SLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMA 211
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC---NGFRPDK 79
C G D A+ +F ++ ++ TWN +I L GS+ ++L L++ M + +PDK
Sbjct: 202 CLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDK 261
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
T V+ AC AI+ GK VHG + G D+ + + L+++Y KCGDV ++F++
Sbjct: 262 ITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEE 321
Query: 140 MRVRSVVSWTTMISGLAASG 159
M + +WT MIS A G
Sbjct: 322 MPEKDASAWTVMISVFALHG 341
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 2/159 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G+ D ++ L+++ G A +F ++ W +MI + G +A
Sbjct: 289 RNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFN 348
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLY 124
+ M G +P+ TF ++ AC S +E+G+ + + ++ + ++D+
Sbjct: 349 CFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDIL 408
Query: 125 LKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ D + M ++ V W ++ G G+++
Sbjct: 409 SRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVE 447
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + N + +LL L S D +A +F +I+ + WN +I+ + S
Sbjct: 37 LKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHD 96
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++L++ ++ + + PD FT P VIK C +++GK++HGLA+K GF D+FVQ +L++
Sbjct: 97 GIVLFHELV-HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVN 155
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG++D RK+FD M + VV W ++I G A G++D A
Sbjct: 156 MYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIA 197
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D AL +F Q+ + TWNLMI ++G + A+ ++ +M+ G RP T V+
Sbjct: 254 GDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 313
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A + KG+ +H K GF D + ++L+++Y KCG ++ +F ++ + V
Sbjct: 314 SAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVG 373
Query: 147 SWTTMISGLAASGDLDAA 164
WT +I GL G + A
Sbjct: 374 HWTAIIVGLGIHGMANHA 391
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD F + L+D KCG V+ RK+FD+M R++VSW MI+G SGD D+A
Sbjct: 206 ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSA 259
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D + L+++ S G+ D A VF + V WN +I G AL
Sbjct: 139 LKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIAL 198
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M D F++ ++ +E +++ R++ + +++ Y
Sbjct: 199 QLFEEMP----ERDAFSWTVLVDGLSKCGKVESARKLFDQMP----CRNLVSWNAMINGY 250
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+K GD D ++F +M + +V+W MI+G +G
Sbjct: 251 MKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQF 287
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY--LKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A ++ +++H ++K FV S L+ LY K D+ R +FD+++ RS++ W T+
Sbjct: 25 APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84
Query: 152 I 152
I
Sbjct: 85 I 85
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 4/166 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++IR G S D +V +LL CS D+A +F P+V+ + +I G+ L+
Sbjct: 61 QLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLE 120
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY+ M+ PD + ++KAC + LA+ +G+EVH A+K GFS + V+ +M+
Sbjct: 121 AIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIME 180
Query: 123 LYLKCGDVDGGRKMFDKMR----VRSVVSWTTMISGLAASGDLDAA 164
LY KCG++ R++F++M + V WT MI G + + + A
Sbjct: 181 LYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRA 226
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ----IRCPHVFTWNLMIRALTIDG 58
+ ++ G S+++L+ ++++L G+ A VF + + W MI +
Sbjct: 162 RALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNE 221
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ +AL + M RP++FT V+ AC A+E G+ VH K ++FV +
Sbjct: 222 ETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGN 281
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y +CG +D + +FD+M+ R V+++ TMISGL+ +G
Sbjct: 282 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 322
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G D A VF +++ V T+N MI L+++G S QA+ L+ +M+ RP
Sbjct: 283 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPT 342
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC ++ G E+ H +A + ++DL + G ++ +
Sbjct: 343 NVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLI 402
Query: 138 DKMRV 142
M++
Sbjct: 403 RTMKM 407
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 31/166 (18%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A +FSQI+ P++F +N MIR + + QA Y G PD TFPF++K+C
Sbjct: 70 DYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSC 129
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL------------------------ 125
I G + HG +K GF +D++VQ++L+ +Y
Sbjct: 130 TKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWT 189
Query: 126 -------KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGDV+ RK+FD+M +++V+W+TMISG A + D A
Sbjct: 190 SMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKA 235
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-------- 55
II++G D + L+ + + +G T+ A L+F ++ V +W MIR
Sbjct: 145 IIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESA 204
Query: 56 ------------------IDGSSL-----QALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
I G + +A+ L+ ++ G R ++ VI +C
Sbjct: 205 RKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHL 264
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
A+E G+ H VK G + ++ + + L+D+Y +CG +D +F+ + R +SWT +I
Sbjct: 265 GALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALI 324
Query: 153 SGLAASG 159
+GLA G
Sbjct: 325 AGLAMHG 331
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G++ + +L L+D+ + G D A+ VF + +W +I L + G S ++
Sbjct: 277 VVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERS 336
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL--- 120
L + M+ G P TF V+ AC +E+ G + RD V+ L
Sbjct: 337 LKYFATMVEAGLTPRDITFTAVLSACSHGGLVER-----GFQIFESMKRDHRVEPRLEHY 391
Query: 121 ---MDLYLKCGDVDGGRKMFDKMRVR 143
+DL + G ++ + KM V+
Sbjct: 392 GCMVDLLGRAGKLEEAERFVLKMPVK 417
>gi|297745998|emb|CBI16054.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +I G D L KL+++ S D+A VF + R ++ WN + RALT+ G
Sbjct: 102 RHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGR 161
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
+ L LY M G D+FT+ +V+KAC+AS A + G+E+HG ++ GF + +
Sbjct: 162 EVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIM 221
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TL+D+Y + G V ++FD+M V++VVSW+ MI+ + +G
Sbjct: 222 TTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNG 263
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L G+ QAL + + P + T+ +I +C ++ +G ++H +
Sbjct: 51 NPLIQSLCKQGNLNQALQV----LSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D F+ + L+++Y + +D RK+FDK R R++ W + L +G
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAG 158
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R+G ++ LLD+ + +G +A VF Q+ +V +W+ MI + +G L+A
Sbjct: 209 ILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEA 268
Query: 64 LLLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
L L+ M+ P+ T V++AC A A+E+GK +HG ++ G
Sbjct: 269 LELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGL 317
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSL 61
+++ GL D +L +L+DL + G A +F ++ +VF WN++IRA DG
Sbjct: 88 RLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPRE 147
Query: 62 QALLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A+ LY M+ C PD FT+P V+KAC A L + G+EVH ++ ++ D+FV + L
Sbjct: 148 AAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGL 207
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D+Y KCG VD +FD VR V W +MI+ +G
Sbjct: 208 IDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNG 246
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R + D + L+D+ + G D A VF WN MI A +G +
Sbjct: 191 RVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAE 250
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L M G P T I A + A+ +G+E+HG + GF ++++L+D
Sbjct: 251 ALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLD 310
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G V R +FD++ R ++SW MI G G D A
Sbjct: 311 MYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHA 352
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
+ ++++C+ S A+ G+++H + +G D + + L+DLY CG V R++FD+M
Sbjct: 65 NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124
Query: 141 RVR-SVVSWTTMISGLAASGDLDAA 164
+ +V W +I A G +AA
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAA 149
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 3/162 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + L LLD+ + G A ++F Q+ + +WN MI + G + A
Sbjct: 295 RRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACE 354
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST-LMDL 123
L+ M PD TF V+ AC +++ KEV L V + M T L+D+
Sbjct: 355 LFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDV 414
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
G + M V+ W +++G +++ A
Sbjct: 415 LGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELA 456
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+IR G+ +D KL + S + ++A VF +I P+ FTWN +IRA +
Sbjct: 54 MIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPV 113
Query: 62 QALLLYNLMICNGFR--PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++ + M+ + + P+K+TFPF+IKA ++ G+ +HG+A+K+ D+FV ++
Sbjct: 114 CSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANS 173
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y CGD+D K+F ++ + VVSW +MI+G G D A
Sbjct: 174 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 218
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ + +D + L+ G D A VF+ I+ V +WN MI GS +AL
Sbjct: 160 IKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 219
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M + T V+ AC +E G+ V + + ++ + + ++D+Y
Sbjct: 220 ELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMY 279
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ +++FD M + V+WTTM+ G A S D +AA
Sbjct: 280 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 319
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-LM 70
D + +LD + + A V + + + WN +I A +G +ALL+++ L
Sbjct: 299 DNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQ 358
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ + ++ T + AC A+E G+ +H K G + +V S L+ +Y KCGD+
Sbjct: 359 LQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDL 418
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ R++F+ + R V W+ MI GLA G
Sbjct: 419 EKAREVFNSVEKRDVFVWSAMIGGLAMHG 447
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ + + L+ + S G + A VF+ + VF W+ MI L + G +A
Sbjct: 393 IKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEA 452
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ ++ M +P+ TF V AC + +++ + + + + G + + ++D
Sbjct: 453 VDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVD 512
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ + G ++ K + M + S W ++ +L A
Sbjct: 513 VLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLA 555
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+IIR GLS D + +++ C S G ++AL VF +I P + +N + R +
Sbjct: 42 QIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLA 101
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ +Y+ M+ P+KFT+P +I+AC AIE+GK++H +K GF D F + L
Sbjct: 102 RNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNL 161
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+ ++ R++FD M R VVSWT++I+G + G +D A
Sbjct: 162 IHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKA 205
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
S +G D A VF + + +WN MI A +A L++ M DKF
Sbjct: 197 SQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAA 256
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
++ AC A+E+GK +HG K+G D + +T++D+Y KCG ++ ++F+++ +
Sbjct: 257 SMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQK 316
Query: 144 SVVSWTTMISGLAASGDLDAA 164
+ SW MI GLA G +AA
Sbjct: 317 GISSWNCMIGGLAMHGKGEAA 337
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 1/140 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D L ++D+ G + A VF+++ + +WN MI L + G A
Sbjct: 278 IEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAA 337
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ L+ M PD TF V+ AC S +E+GK + G M ++D
Sbjct: 338 IELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVD 397
Query: 123 LYLKCGDVDGGRKMFDKMRV 142
L + G ++ RK+ ++M V
Sbjct: 398 LLGRAGLLEEARKLINEMPV 417
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 91/151 (60%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+S+D ++ LLDL G + AL++F+ +V WNLM+ A ++
Sbjct: 270 LFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKS 329
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G RP++FT+P +++ C + I+ G+++H L+VK GF DM+V L+D+
Sbjct: 330 FELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDM 389
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G ++ R++ + ++ + VVSWT+MI+G
Sbjct: 390 YSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I G S D + L++L + G+ A F +I TWN ++ G +
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEE 530
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M +G + + FTF + A I++GK++H +K G S + V + L+
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALIS 590
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG + + F +M R+ VSW T+I+ + G
Sbjct: 591 LYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K + GL +++ L+DL S G A VF ++ +W M+ +G +
Sbjct: 67 KAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEE 126
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M G P + V+ +C + +G+ +H K GF ++FV + ++
Sbjct: 127 ALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LYL+CG ++F M R V++ T+ISG A G + A
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHA 228
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D + L+D+ S YG + A V ++ V +W MI AL
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD I C A+ +G ++H +G+S D+ + + L++LY
Sbjct: 432 AAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLY 491
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CG + F+++ + ++W ++SG A SG
Sbjct: 492 ARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSG 526
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH T+N +I G AL ++ M +G PD T ++ AC + ++KG
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++H KAG S D ++ +L+DLY+KCGDV+ +F+ +VV W M+
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324
Query: 160 DL 161
DL
Sbjct: 325 DL 326
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G S + + L+ L G + A + FS++ + +WN +I + + G L+
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
AL L++ M G +P+ TF V+ AC +E+G ++ + G + ++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
D++ + G +D +K ++M + + + W T++S +++
Sbjct: 692 DIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIE 733
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H AV G + V + L+DLY K G V R++F+++ R VSW M+SG A +G
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I++YG + +L L+D+ YGK A +F +I P+ +WN+++R G+
Sbjct: 187 IVKYGFCWNVILGSSLVDI---YGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNE 243
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A++++ MI RP FTF + AC + A+++G ++HG+A++ G+ D V S+L
Sbjct: 244 KEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSL 303
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KCGD++ ++F+ ++++SWT+++SG A SG A
Sbjct: 304 IDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREA 347
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 26 YGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
YGK D A +F ++ +WN MI A G + +AL L++ M G ++ TF
Sbjct: 105 YGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITF 164
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+ +C LA+ K++HGL VK GF ++ + S+L+D+Y KC + R+MFD++
Sbjct: 165 ASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIEN 224
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
+ +SW ++ G+ A
Sbjct: 225 PNAISWNVIVRRYLEMGNEKEA 246
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQ 62
I R+GL ++ + LL + G L F Q+ +WN ++ + G S +
Sbjct: 420 IYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEE 479
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ ++ M P KFT ++ AC A+E+GK++HG ++ G+ D+ + L+D
Sbjct: 480 AMTIFGEMQWET-TPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVD 538
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC ++ K+F + R ++ W +MI G +G
Sbjct: 539 MYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNG 575
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+T A ++F ++ V +WN M+ T +AL LM D T ++
Sbjct: 342 GQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLIL 401
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSV 145
C +E GK+VHG + G ++FV + L+ +Y KCG++ R F +M R
Sbjct: 402 NVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDR 461
Query: 146 VSWTTMISGLAASG 159
+SW +++ A G
Sbjct: 462 ISWNALLTSHARHG 475
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 82 FPFVIKA-----CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
FPF + A C ++LAI + ++V + + +F+ + ++ Y KC +D R++
Sbjct: 58 FPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDAREL 117
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F++M R SW MI+ A G + A
Sbjct: 118 FEEMPQRDGGSWNAMITAYAQGGCAEKA 145
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G D + L+D+ S ++AL VF + + WN MI +G
Sbjct: 521 MIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDV 580
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L L+ LM G +PD TF ++ CI G E + ++ K + ++++
Sbjct: 581 LGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIE 640
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
LY + G +D +M V+ T +
Sbjct: 641 LYGRHGFMDELEDFIKRMPFEPTVAMLTRV 670
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 91/151 (60%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+S+D ++ LLDL G + AL++F+ +V WNLM+ A ++
Sbjct: 270 LFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKS 329
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G RP++FT+P +++ C + I+ G+++H L+VK GF DM+V L+D+
Sbjct: 330 FELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDM 389
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G ++ R++ + ++ + VVSWT+MI+G
Sbjct: 390 YSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K + GL +++ L+DL S G A VF ++ +W M+ +G +
Sbjct: 67 KAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEE 126
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M G P + V+ +C + +G+ +H K GF ++FV + ++
Sbjct: 127 ALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LYL+CG ++F M R V++ T+ISG A G + A
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHA 228
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 75/157 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I G S D + L++L + G+ A F ++ T N ++ G +
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEE 530
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M +G + + FTF + A I++GK++H +K G S + V + L+
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALIS 590
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG + + F +M R+ VSW T+I+ + G
Sbjct: 591 LYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH T+N +I G AL ++ M +G PD T ++ AC + ++KG
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++H KAG S D ++ +L+DLY+KCGDV+ +F+ +VV W M+
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324
Query: 160 DL 161
DL
Sbjct: 325 DL 326
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D + L+D+ S YG + A V ++ V +W MI AL
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD I C A+ +G ++H +G+S D+ + + L++LY
Sbjct: 432 AAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLY 491
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CG + F++M ++ ++ ++SG A SG
Sbjct: 492 ARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSG 526
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G S + + L+ L G + A + FS++ + +WN +I + + G L+
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
AL L++ M G +P+ TF V+ AC +E+G ++ + G + ++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
D++ + G +D +K ++M + + + W T++S +++
Sbjct: 692 DIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIE 733
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H AV G + V + L+DLY K G V R++F+++ R VSW M+SG A +G
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 91/157 (57%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D+ + L+ + S +G+ D A +VF I +W +M+ ALT +G S +
Sbjct: 525 RVVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQNGHSHE 584
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +Y+ + GFRP F + +C A + + + +HG+ + F D+ + + LM+
Sbjct: 585 ALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMN 644
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG+++ R +FD+M ++ VSWTTMI G A +G
Sbjct: 645 VYAKCGELEEARLVFDQMTEKNEVSWTTMIGGYAQNG 681
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSS 60
+I GL D +L +L L + G +F R PH V TW MI A G S
Sbjct: 326 RIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFD--RMPHRTVVTWTTMIAAYNQRGYS 383
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++AL LY+ C PD V++AC +E+G+ VH F + VQ+ L
Sbjct: 384 MEALELYH---CMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLL 440
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+D+Y+KCGD+ R+ FD + R V+SWT++I+ +
Sbjct: 441 VDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYS 476
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ +IR ++ L+DL +G + AL VF +R V W I A G S
Sbjct: 223 IHALIRSKGVESAMVSTGLIDLYGKWGFFEDALQVFESVRDRDVVIWTAFIAACVYHGQS 282
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL L+ M G + + TF ++ AC E GK + G D +Q +
Sbjct: 283 GFALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRIYTLGLEYDDVLQDGI 342
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ L+ +CG + G R+MFD+M R+VV+WTTMI+ G
Sbjct: 343 LSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRG 381
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 8 GLSNDQLLVRKLLD--LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
G S+ Q+ ++L L + YGK + A VF IR + F+W MI A +G +
Sbjct: 124 GASSPQIQADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERR 183
Query: 63 ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ ++ M+ G PD T+ V+ AC +E G +H L G M V + L+
Sbjct: 184 AIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHALIRSKGVESAM-VSTGLI 242
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
DLY K G + ++F+ +R R VV WT I+ G
Sbjct: 243 DLYGKWGFFEDALQVFESVRDRDVVIWTAFIAACVYHG 280
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 1/147 (0%)
Query: 14 LLVRKLL-DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
L+V+ LL D+ G A F + V +W +I A + + +AL +++ M
Sbjct: 434 LMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYSHENFGREALEVFHSMEL 493
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G P+ TF VI AC ++ G+ +H V G D FV + L+ +Y K G VD
Sbjct: 494 EGVEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDF 553
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FD + V+ SW M+ L +G
Sbjct: 554 ARVVFDSIPVKRYPSWRVMLVALTQNG 580
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L LL+L + G + + +F + V TWN MI A +AL + M
Sbjct: 33 DTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRMD 92
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL--AVKAGFSRDMFVQSTLMDLYLKCGD 129
P TF V+ AC + +E GK +H A D +Q++L+ +Y KCG
Sbjct: 93 AP---PSSITFTSVLGACCSPDDLETGKAIHRQIGASSPQIQADEILQNSLVTMYGKCGS 149
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ ++F +R ++ SWT MI+ A +G
Sbjct: 150 LEDAERVFHGIRRKNAFSWTAMITAYAQNG 179
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+++ + G+ + A LVF Q+ + +W MI +G +AL LY M
Sbjct: 635 DLVLSNVLMNVYAKCGELEEARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAM- 693
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+P+ F VI +C A+ +G+ VH AG + + + L+++Y KCG +
Sbjct: 694 --DVQPNFIAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLG 751
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
R+ FD +W +M + A G
Sbjct: 752 LAREFFDSTYCPDAGAWNSMATAYAQFG 779
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
TF V+ AC +E+GK+VH ++ D +Q+ L++LY KCGD++ R++F+ M
Sbjct: 1 TFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAM 60
Query: 141 RVRSVVSWTTMISG 154
R+V +W TMI+
Sbjct: 61 ERRTVATWNTMITA 74
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL N++++V L+++ + GK A F CP WN M A G Q L LY
Sbjct: 729 GLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSMATAYAQFGHGSQVLELY 788
Query: 68 NLMICNGFRPDKFTFPFVIKAC 89
M G +P+ T V+ AC
Sbjct: 789 REMCLQGVQPNGITLLSVLVAC 810
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+R G + K + C+ G +A +F+ I P +F +NL+I+A T +GS
Sbjct: 54 QILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSF 113
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+LL+ + G PD FT+PFV KA + +G++V+G VK+G D +V ++L
Sbjct: 114 RKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSL 173
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
MD+Y + G V R++F++M R VVSW +ISG
Sbjct: 174 MDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISG 207
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L D ++ L+++ + G + +L +F+ ++ +W +I L ++G + +AL L+
Sbjct: 304 ALLTDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELF 363
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYL 125
M+ G +PD TF V+ AC +E+G++ H ++ A + + ++ L+DL
Sbjct: 364 AEMVQTGVKPDDITFIGVLSACSHGGLVEEGRK-HFRSMTAVYQIEPKLEHYGCLIDLLG 422
Query: 126 KCGDVDGGRKMFDK 139
+ G +D ++ +K
Sbjct: 423 RAGQLDEAEELIEK 436
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 25/138 (18%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A +F + V W MI A+ L+ M PD+FT
Sbjct: 247 GQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTL---- 302
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+A L D V + L+++Y KCG ++ ++F+ ++ +
Sbjct: 303 ---VALLT------------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTA 341
Query: 147 SWTTMISGLAASGDLDAA 164
SWT++I GLA +G A
Sbjct: 342 SWTSIICGLAMNGKTSKA 359
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 35/161 (21%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+D+ + G+ + VF ++ V +WN++I A
Sbjct: 158 VVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDA 217
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + FR P C S+ V G
Sbjct: 218 V--------DVFRQIFNDMPIKTVICWTSM-------VSG-------------------- 242
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+ CG +D R++F++ VR VV WT MI+G D A
Sbjct: 243 YVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDA 283
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
F WN +IR +I G L +YN M+ G RPD TFPFV+KAC + + KG+EVHG
Sbjct: 7 AFLWNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHG 65
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VK GF D+FV +TL+ Y CG + ++FD+M + +VSW TMI + +G
Sbjct: 66 SVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNG 121
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I G + D + L D+ + G A VF V ++N++I + +
Sbjct: 269 RSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLRDEV-SYNILIVGHSQTSDCSE 327
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L L++ M G + D +F + AC AI++GKE+HG ++ F +FV ++L+D
Sbjct: 328 SLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLD 387
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R +FD+M + V SW TMI G G+LD A
Sbjct: 388 FYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTA 429
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ- 62
+++ G +D + LL G A VF ++ + +WN MI +++G +
Sbjct: 67 VVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRD 126
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ LMI G +P+ T + + + G+EVHG +++ G D+F+ ++L+D
Sbjct: 127 ALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLID 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+Y K G +F K+ ++VVSW MI+ A +
Sbjct: 187 MYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQN 222
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL +D + L+D+ + G + A VF ++ +V +WN MI + L A+
Sbjct: 170 IRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAV 229
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M G P+ TF V+ AC + GKE+H ++ G + D+FV + L D+Y
Sbjct: 230 GLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMY 289
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K G + R +FD +R VS+ +I G + + D
Sbjct: 290 AKSGHLKLARNVFDT-SLRDEVSYNILIVGHSQTSD 324
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 91/151 (60%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+S+D ++ LLDL G + AL++F+ +V WNLM+ A ++
Sbjct: 270 LFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKS 329
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G RP++FT+P +++ C + I+ G+++H L+VK GF DM+V L+D+
Sbjct: 330 FELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDM 389
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G ++ R++ + ++ + VVSWT+MI+G
Sbjct: 390 YSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I G S D + L++L + G+ A F +I TWN ++ G +
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEE 530
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M +G + + FTF + A I++GK++H +K G S + V + L+
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALIS 590
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG + + F +M R+ VSW T+I+ + G
Sbjct: 591 LYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K + GL +++ L+DL S G A VF ++ +W M+ +G +
Sbjct: 67 KAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEE 126
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M G P + V+ +C + +G+ +H K GF ++FV + ++
Sbjct: 127 ALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LYL+CG ++F M R V++ T+ISG A G + A
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHA 228
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D + L+D+ S YG + A V ++ V +W MI AL
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDAL 431
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD I C A+ +G ++H +G+S D+ + + L++LY
Sbjct: 432 AAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLY 491
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CG + F+++ + ++W ++SG A SG
Sbjct: 492 ARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSG 526
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH T+N +I G AL ++ M +G PD T ++ AC + ++KG
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++H KAG S D ++ +L+DLY+KCGDV+ +F+ +VV W M+
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324
Query: 160 DL 161
DL
Sbjct: 325 DL 326
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G S + + L+ L G + A + FS++ + +WN +I + + G L+
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
AL L++ M G +P+ TF V+ AC +E+G ++ + G + ++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
D++ + G +D +K ++M + + + W T++S +++
Sbjct: 692 DIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIE 733
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H AV G + V + L+DLY K G V R++F+++ R VSW M+SG A +G
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 19 LLDLC---SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
L++LC + +A VF I+ P+ WN MIR + + +L LY M+ G
Sbjct: 1 LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL 60
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
P+ +TFPF++K+C S +G+++HG +K GF D++V ++L+ +Y++ ++ K
Sbjct: 61 LPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYK 120
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+ R VVS+T +I+G A+ GD+ +A
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSA 149
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F +I V +WN MI G +AL L+ M+ RPD+ T+ V+
Sbjct: 144 GDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVL 203
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + + L+DLY KCG+V+ +F + + V+
Sbjct: 204 SACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVI 263
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 264 SWNTLIGG 271
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F + V +WN +I T +ALLL
Sbjct: 225 HGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLL 284
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T V+ AC AI+ G+ +H K G + ++++L+D+Y
Sbjct: 285 FQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 344
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ M +S+ SW MI G A G DA+
Sbjct: 345 AKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADAS 384
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF+ + + +WN MI + G + + L+
Sbjct: 329 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLF 388
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M G PD TF ++ AC S ++ G+ + + + + ++DL
Sbjct: 389 SRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGH 448
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
G +M + M + V W +++ G+++ A
Sbjct: 449 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELA 487
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q ++ G D L KL+++ S D+A VF + R ++ WN + RAL + G
Sbjct: 93 QLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGN 152
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
L LY M G D+FT+ +++KAC+AS ++KGKE+H ++ G+ + V
Sbjct: 153 DVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVM 212
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TLMD+Y + G V +FD+M V++VVSW+ MI+ A +G
Sbjct: 213 TTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNG 254
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R+G ++ L+D+ + +G +A VF ++ +V +W+ MI +G +A
Sbjct: 200 ILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEA 259
Query: 64 LLLYNLMICNGFR--PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L+ M+ N P+ T V++AC A A+E+GK +H ++ G + V S L+
Sbjct: 260 LELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALI 319
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG ++ G+ +FD+M + VV W ++IS G
Sbjct: 320 TMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHG 357
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L G+ QAL L + + P + T +I + ++ +VH L V
Sbjct: 42 NHLIQSLCKQGNLKQALYL----LSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
GF +D F+ + L++++ + VD RK+FDK R R++ W + LA +G
Sbjct: 98 GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAG 149
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL + ++ L+ + + GK + L+F ++ V WN +I + + G +A
Sbjct: 303 ILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKA 362
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ ++ MI +GF P +F V+ AC + +E+GK++ VK G + + ++D
Sbjct: 363 IKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVD 422
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
L + +D K+ + +R+
Sbjct: 423 LLGRANRLDEAAKIIEDLRIE 443
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+R G + K + C+ G +A +F+ I P +F +NL+I+A T +GS
Sbjct: 54 QILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSF 113
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+LL+ + G PD FT+PFV KA + +G++V+G VK+G D +V ++L
Sbjct: 114 RKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSL 173
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
MD+Y + G V R++F++M R VVSW +ISG
Sbjct: 174 MDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISG 207
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+D+ + G+ + VF ++ V +WN++I A
Sbjct: 158 VVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDA 217
Query: 64 LLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ M + RP++ T + ACIA +E GKE+H V+ + + + L+D
Sbjct: 218 VDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY-VREQLGFTIKIGNALVD 276
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + R++F+ M +++V+ WT+M+SG G LD A
Sbjct: 277 MYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEA 318
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A +F + V W MI A+ L+ M PD+FT ++
Sbjct: 313 GQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALL 372
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C +E+GK +HG + D V + L+++Y KCG ++ ++F+ ++ +
Sbjct: 373 TGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTA 432
Query: 147 SWTTMISGLAASGDLDAA 164
SWT++I GLA +G A
Sbjct: 433 SWTSIICGLAMNGKTSKA 450
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+++ + G + +L +F+ ++ +W +I L ++G + +AL L+ M+
Sbjct: 399 DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMV 458
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGD 129
G +PD TF V+ AC +E+G++ H ++ A + + ++ L+DL + G
Sbjct: 459 QTGVKPDDITFIGVLSACSHGGLVEEGRK-HFRSMTAVYQIEPKLEHYGCLIDLLGRAGQ 517
Query: 130 VDGGRKMFDK 139
+D ++ +K
Sbjct: 518 LDEAEELIEK 527
>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
[Vitis vinifera]
Length = 711
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I++YG + +L L+D+ YGK A +F +I P+ +WN+++R G+
Sbjct: 187 IVKYGFCWNVILGSSLVDI---YGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNE 243
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A++++ MI RP FTF + AC + A+++G ++HG+A++ G+ D V S+L
Sbjct: 244 KEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSL 303
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KCGD++ ++F+ ++++SWT+++SG A SG A
Sbjct: 304 IDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREA 347
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 26 YGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
YGK D A +F ++ +WN MI A G + +AL L++ M G ++ TF
Sbjct: 105 YGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITF 164
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+ +C LA+ K++HGL VK GF ++ + S+L+D+Y KC + R+MFD++
Sbjct: 165 ASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIEN 224
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
+ +SW ++ G+ A
Sbjct: 225 PNAISWNVIVRRYLEMGNEKEA 246
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQ 62
I R+GL ++ + LL + G L F Q+ +WN ++ + G S +
Sbjct: 420 IYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEE 479
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ ++ M P KFT ++ AC A+E+GK++HG ++ G+ D+ + L+D
Sbjct: 480 AMTIFGEMQWET-TPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVD 538
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC ++ K+F + R ++ W +MI G +G
Sbjct: 539 MYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNG 575
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+T A ++F ++ V +WN M+ T +AL LM D T ++
Sbjct: 342 GQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLIL 401
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSV 145
C +E GK+VHG + G ++FV + L+ +Y KCG++ R F +M R
Sbjct: 402 NVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDR 461
Query: 146 VSWTTMISGLAASG 159
+SW +++ A G
Sbjct: 462 ISWNALLTSHARHG 475
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 82 FPFVIKA-----CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
FPF + A C ++LAI + ++V + + +F+ + ++ Y KC +D R++
Sbjct: 58 FPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDAREL 117
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F++M R SW MI+ A G + A
Sbjct: 118 FEEMPQRDGGSWNAMITAYAQGGCAEKA 145
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G D + L+D+ S ++AL VF + + WN MI +G
Sbjct: 521 MIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDV 580
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L L+ LM G +PD TF ++ CI G E + ++ K + ++++
Sbjct: 581 LGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIE 640
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
LY + G +D +M V+ T +
Sbjct: 641 LYGRHGFMDELEDFIKRMPFEPTVAMLTRV 670
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 4/166 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALL----VFSQIRCPHVFTWNLMIRALTIDG 58
++ GL N+ + ++L CS + +L VF QI+ P V +N +I+A ++
Sbjct: 27 QVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPTVCIYNTLIKAFLVNN 86
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
AL ++ M+ + +PD +T P+V+KAC GK +HG + K G D++V +
Sbjct: 87 KFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGN 146
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+LM +Y GDV R +FD++ +VVSW+ MISG A GD+D+A
Sbjct: 147 SLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSA 192
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A L F + W MI + ++L L+ LM PD+ F ++
Sbjct: 187 GDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSIL 246
Query: 87 KACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC A+E G +H L + + ++L+D+Y KCG+++ +++FD M +R V
Sbjct: 247 SACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDV 306
Query: 146 VSWTTMISGLAASGD 160
V W MISG+A GD
Sbjct: 307 VCWNAMISGMAMHGD 321
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L LLD+ + G + A +F + V WN MI + + G AL L+ M G
Sbjct: 277 LSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVG 336
Query: 75 FRPDKFTFPFVIKAC 89
+PD TF V AC
Sbjct: 337 VKPDDITFIAVFTAC 351
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 74/112 (66%)
Query: 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
F +N +IR G +A+LL+ M+ +G PDK+TFPF + C S G ++HGL
Sbjct: 99 FMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGL 158
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+K +++D+FVQ++L+ Y +CG++D RK+FD+M R+VVSWT+MI G A
Sbjct: 159 IIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYA 210
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + L++ L+D+ D A +F + ++ N M G + +AL +
Sbjct: 265 GIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVL 324
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
NLM+ +G RPD+ + I +C I GK HG ++ GF + + L+D+Y+KC
Sbjct: 325 NLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKC 384
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D ++FD+M ++VV+W ++++G +G++DAA
Sbjct: 385 HRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAA 421
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ + D + L+ + G+ D A VF ++ +V +W MI + A
Sbjct: 159 IIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDA 218
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M+ + P+ T VI AC +E G++V+ +G + + S L+D
Sbjct: 219 VDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVD 278
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+KC +D +++FD+ ++ M S G
Sbjct: 279 MYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQG 315
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G+ D A F+ + ++ +WN +I AL + +A+ +++ M D T +
Sbjct: 416 GEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSI 475
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC A++ K ++ K D+ + +TL+D++ +CGD + +F+ + R V
Sbjct: 476 ASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDV 535
Query: 146 VSWT 149
+WT
Sbjct: 536 SAWT 539
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 13 QLLVR---KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
QL VR L+D+ S G + A+ +F+ + V W I A+ + G+ +A+ L+N
Sbjct: 501 QLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNE 560
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCG 128
MI G +PD F + AC +++GKE+ K G S + ++DL + G
Sbjct: 561 MIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAG 620
Query: 129 DVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
++ ++ M + V W ++++ G+++ A
Sbjct: 621 LLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMA 657
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 84/152 (55%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L N+ L KL + G A ++F I + F WN MIR +G ++AL LY
Sbjct: 72 NLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLKNSFLWNFMIRGYACNGFPVKALFLY 131
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G + DKFT+PFVIKAC +E G VH V GF+ D++V ++L+ +Y K
Sbjct: 132 QDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVITGFNLDIYVGNSLLAMYSKF 191
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G++ R +FD+M VR + SW TMISG +G
Sbjct: 192 GNMKMARMVFDRMPVRDLTSWNTMISGYLKNG 223
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ L+ L+++ A +F + +WN MI + + ++L ++ M+
Sbjct: 279 NHFLINSLIEMYCKCNSMVDARKLFEHMAWKDTVSWNSMISGYARNRDAFESLRVFCRMV 338
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G +PDK TF V+ AC A+E G+ VH K GFS +FV + L+D+Y KCG++
Sbjct: 339 LEGTKPDKITFITVLGACEQITAMEFGRSVHSYLSKKGFSATIFVATALIDMYAKCGNLA 398
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
+F++M +++ W+ MISG G
Sbjct: 399 CAHLVFEEMPEKNLFCWSAMISGYGIHG 426
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 1/159 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G + D + LL + S +G A +VF ++ + +WN MI +G +
Sbjct: 168 EVVITGFNLDIYVGNSLLAMYSKFGNMKMARMVFDRMPVRDLTSWNTMISGYLKNGKPRE 227
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLM 121
L ++NLM G D T ++ C A ++GKE+HG V+ S + F+ ++L+
Sbjct: 228 VLAIFNLMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVVRNRHSVFNHFLINSLI 287
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++Y KC + RK+F+ M + VSW +MISG A + D
Sbjct: 288 EMYCKCNSMVDARKLFEHMAWKDTVSWNSMISGYARNRD 326
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G S + L+D+ + G A LVF ++ ++F W+ MI I G +A+
Sbjct: 374 KKGFSATIFVATALIDMYAKCGNLACAHLVFEEMPEKNLFCWSAMISGYGIHGMGREAIS 433
Query: 66 LYNLMICNGFRPDKFTFPFVIK 87
L++ MI N PD+ +++K
Sbjct: 434 LFHEMIKNHIIPDEAMQEWLLK 455
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
V++ + + KG+++H + +G + ++ + L Y CG + + +FD + ++
Sbjct: 47 VLQTLTSIKSFTKGQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLK 106
Query: 144 SVVSWTTMISGLAASG 159
+ W MI G A +G
Sbjct: 107 NSFLWNFMIRGYACNG 122
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT-DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I GL + +RKL+ L + + HA L+F + P + +N M R + L
Sbjct: 11 LITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFRVYAASPTPLH 70
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALLL+ M +G PD +TFPF++KAC A + KG+E+H A+K G +FV+++L+
Sbjct: 71 ALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVFVENSLIH 130
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY +D R++FD M R + SWTT+++ A S ++AA
Sbjct: 131 LYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAA 172
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ G +HALLVF + HV W M+ L + G Q + + M+
Sbjct: 254 DSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMV 313
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG 98
+G +PD+ TF ++ C S + +G
Sbjct: 314 DSGIKPDEVTFVALLSGCSHSGLVNEG 340
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ V +++ M+ A +AL L+ + P V+ AC A
Sbjct: 175 VFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGA 234
Query: 95 IEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
++ G+ V+ + G D + + L+D++ KCG ++ +F+ + + V WT M+S
Sbjct: 235 LDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLS 294
Query: 154 GLAASG 159
GLA G
Sbjct: 295 GLAMHG 300
>gi|255570994|ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534228|gb|EEF35943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 2 QKIIRYGLSND-----QLLVRKLLDLCSFYGKTDHALLVF--SQIRCPHVFTWNLMIRAL 54
Q ++++ ++ + +L++ KL+ L + +A +F S R V WN++IRA
Sbjct: 34 QNLLKHHIAKNNDTHFRLVIEKLMHLYLVCNEDQYARHLFDKSPQRPRKVVIWNMLIRAY 93
Query: 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM 114
+G +A+ LY M+ G +P K+T+PFV+KAC A AIE+GKE+H A + D+
Sbjct: 94 AWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEIHIHAKRLDLDSDV 153
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+V + ++D+Y KCG +D +F M R VV+W +MI+G +
Sbjct: 154 YVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSMIAGFS 195
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D +L LL + G A+ F ++ +++ +I +G++ +AL
Sbjct: 353 IKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEMELKDEVSYSAIISGCMQNGNAKEAL 412
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+++ M +G P+ T ++ AC A++ G H A+ GF+ ++ + + L+D+Y
Sbjct: 413 SMFHRMRLSGMDPELATMVGILPACAHLAALQHGSCCHSYALIKGFTSEITICNALIDMY 472
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D R +FD+M R +VSW MI G
Sbjct: 473 AKCGRIDTARNVFDRMHKRDIVSWNAMIIAYGNHG 507
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL-QAL 64
R L +D + ++D+ + G D A +VFS + V WN MI ++ + +
Sbjct: 146 RLDLDSDVYVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSMIAGFSLHRVCYNETI 205
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M + RP+ T V+ A + A+ GK +HG V+ G+ D+ V + L+D+Y
Sbjct: 206 QLLAQMQKDLVRPNSSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVATGLLDMY 265
Query: 125 LKCGDVDGGRKMFDKMR-VRSVVSWTTMISG 154
KC + R FD M VR+ V+W+ M+
Sbjct: 266 GKCQCIIYARNFFDMMSIVRNEVTWSAMLGA 296
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 5 IRYGLSNDQLLVRKLLDL-----CSFYGKT--DHALLVFSQIRCPHVFTWNLMIRALTID 57
+R G +D ++ LLD+ C Y + D +V +++ TW+ M+ A +
Sbjct: 247 VRRGYIDDVVVATGLLDMYGKCQCIIYARNFFDMMSIVRNEV------TWSAMLGAYVMC 300
Query: 58 GSSLQALLLYNLMI----CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
+AL L+ M+ P + T V++AC + +G+ +H +K+GF D
Sbjct: 301 ELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRACAELTDVSRGRCIHCYTIKSGFISD 360
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + +TL+ Y KCG V + F +M ++ VS++ +ISG +G+ A
Sbjct: 361 LMLGNTLLSTYAKCGTVSDAIRYFHEMELKDEVSYSAIISGCMQNGNAKEA 411
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ + L+D+ + G+ D A VF ++ + +WN MI A G ++ALLL+
Sbjct: 457 GFTSEITICNALIDMYAKCGRIDTARNVFDRMHKRDIVSWNAMIIAYGNHGLGMEALLLF 516
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
+ M+ +G PD TF ++ AC S +++ GL
Sbjct: 517 DNMLADGLEPDDVTFICLLSACSHSGLVKEDSTGWGL 553
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 2/136 (1%)
Query: 31 HALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFVIKA 88
+A VFS+I P +VF WN +IR G+S+ A+ LY M +GF PD T+PF++KA
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKA 130
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
+ G+ +H + +++GF ++VQ++L+ LY CGDV K+FDKM + +V+W
Sbjct: 131 VGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 149 TTMISGLAASGDLDAA 164
++I+G A +G + A
Sbjct: 191 NSVINGFAENGKPEEA 206
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + + LL L + G A VF ++ + WN +I +G +A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G +PD FT ++ AC A+ GK H +K G +R++ + L+DL
Sbjct: 207 LALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDL 266
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG V+ + +FD+M ++ VSWT++I GLA +G
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL+ + LLDL + G+ + A +F ++ + +W +I L ++G +A
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEA 307
Query: 64 LLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
+ L+ N+ G P + TF ++ AC +++G E ++ + + ++
Sbjct: 308 IELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMV 367
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
DL + G V + KM ++ +VV W T++ GD D A
Sbjct: 368 DLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLA 411
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDG 58
+ + L+N + KL+DL + A VF ++ R +V WNL+IRA +G
Sbjct: 39 LHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNG 98
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+A+ LY M+ G P++FTFPFV+KAC A +G+E+H + +++V +
Sbjct: 99 PYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVST 158
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
L+D Y KCG +D +++FDKM R VV+W +MISG +
Sbjct: 159 ALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFS 196
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G D ++ LL + + G + A+ F+++ ++ +I +G+S + L
Sbjct: 352 IKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGL 411
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M +G P+K T V+ AC + G H A+ GF+ D + + L+D+Y
Sbjct: 412 RMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMY 471
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D RK+FD+M R +VSW TMI G
Sbjct: 472 AKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHG 506
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R L ++ + L+D + G D A VF ++ V WN MI ++ S
Sbjct: 145 IKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDE 204
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + + N P+ T V+ A ++ GKE+HG V+ GF D+ V + ++D+
Sbjct: 205 VARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDV 264
Query: 124 YLKCGDVDGGRKMFDKMR-VRSVVSWTTMI 152
Y KC +D R++FD M V++ V+W+ M+
Sbjct: 265 YGKCQCIDYARRIFDMMGIVKNEVTWSAMV 294
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIR-CPHVFTWNLMIRALTIDGSS 60
+R G D ++ +LD+ YGK D+A +F + + TW+ M+ A +
Sbjct: 247 VRRGFVGDVVVGTGILDV---YGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFM 303
Query: 61 LQALLLYNLMICNGFRPD-----KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+AL L+ ++ + D T VI+ C + G +H A+K+GF D+
Sbjct: 304 REALELFCQLLM--LKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLM 361
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
V +TL+ +Y KCG ++G + F++M +R VS+T +ISG +G+
Sbjct: 362 VGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGN 406
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + D ++ L+D+ + GK D A VF ++ + +WN MI A I G L+ALLL+
Sbjct: 456 GFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLF 515
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M G +PD TF +I AC S + +GK + + G M + ++DL +
Sbjct: 516 DNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSR 575
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
G +KM + V W ++S
Sbjct: 576 AGLFKEVHSFIEKMPLEPDVRVWGALLSA 604
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST--------LMDLYLKCGDVDGGRKM 136
++++CI S ++ +GK +H +K R T L+DLY+ C ++ R +
Sbjct: 15 LLESCIQSKSLFRGKLIHQHLLKC-LHRTHETNLTNFDVPFEKLVDLYIACSELKIARHV 73
Query: 137 FDKM--RVRSVVSWTTMISGLAASGDLDAA 164
FDKM R ++VV W +I A +G + A
Sbjct: 74 FDKMPHRPKNVVLWNLLIRAYAWNGPYEEA 103
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I R GL D+ + KL+ C S G +A +F+ ++ P +F +N+M++ G
Sbjct: 119 QIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGIL 178
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ LLL+ + +G PD FT+PFV+KA + +G++V G VK G D +V ++L
Sbjct: 179 RKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSL 238
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+D+Y + +V+ +K+FD+M R VSW MISG
Sbjct: 239 IDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 272
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ D + L+D+ ++A +F ++ +WN+MI A
Sbjct: 223 IVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA 282
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLM 121
+ + M G +PD+ T + AC A +E G E+H K GF+ + + L+
Sbjct: 283 INTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTR--IDNALL 340
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG ++ R +FD+M +++V+ WT+MISG GDL A
Sbjct: 341 DMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 383
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F + V W MI A+ L+ M +PDKFT ++
Sbjct: 378 GDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLL 437
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C A+E+GK +HG + + D+ V + L+++Y KCG VD ++F ++ +
Sbjct: 438 TGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTA 497
Query: 147 SWTTMISGLAASGDLDAA 164
SWT++I GLA +G A
Sbjct: 498 SWTSIICGLAMNGKTSEA 515
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G D +L +F ++ +W +I L ++G + +AL L++ M G +PD
Sbjct: 471 LIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 530
Query: 79 KFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
TF V+ AC +E+G K+VH + K ++DL + G +D
Sbjct: 531 DITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEH------YGCVIDLLGRAGLLD 584
Query: 132 GGRKMFDKMRVRS 144
++ ++ + +
Sbjct: 585 EAEELIQEIPIEN 597
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 5/158 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I LS L+ +++DL F +A L+F+Q+ P+ + +N+MIR LT +
Sbjct: 54 QMIINSLSKPNFLLPRIIDLKDF----AYASLLFTQMPNPNDYAFNVMIRGLTTTWRNYS 109
Query: 63 -ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY M G +P+ FTFPF+ +C +A+ G+ H L +K GF+ D + +L+
Sbjct: 110 LAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLKMGFNNDSHINHSLI 169
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC +D RK+FD++ R +VSW +MISG G
Sbjct: 170 TMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMG 207
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G A VF + + TWN MI +G+S +A+ L+N+M G P+
Sbjct: 269 LIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPN 328
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T V+ AC + A++ GK V A + G D++V S L+D+Y KCG +D ++F+
Sbjct: 329 EITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRVFE 388
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M ++ VSW MIS LA G
Sbjct: 389 NMPHKNEVSWNAMISALAFHG 409
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +ND + L+ + + K D A VF +I + +WN MI T G + +A
Sbjct: 153 VLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREA 212
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L+ M GF P + T ++ AC + LA+ GK V L + + S L+
Sbjct: 213 VRLFMEMREQGFEPVEMTLVSILGACGDLGDLAL--GKWVEALIGDKKMELNSYTASALI 270
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCGD+ R++FD M + +V+W MI+G A +G D A
Sbjct: 271 DMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEA 313
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D + L+D+ + G D+AL VF + + +WN MI AL G + +AL L+
Sbjct: 359 GLQHDVYVASALVDMYAKCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLF 418
Query: 68 NLMICNG--FRPDKFTFPFVIKAC 89
+ M+ NG RP+ TF V AC
Sbjct: 419 SRML-NGSTVRPNDITFIGVFAAC 441
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I R GL D+ + KL+ C S G +A +F+ ++ P +F +N+M++ G
Sbjct: 165 QIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGIL 224
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ LLL+ + +G PD FT+PFV+KA + +G++V G VK G D +V ++L
Sbjct: 225 RKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSL 284
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+D+Y + +V+ +K+FD+M R VSW MISG
Sbjct: 285 IDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 318
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ D + L+D+ ++A +F ++ +WN+MI A
Sbjct: 269 IVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA 328
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLM 121
+ + M G +PD+ T + AC A +E G E+H K GF+ + + L+
Sbjct: 329 INTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT--TRIDNALL 386
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG ++ R +FD+M +++V+ WT+MISG GDL A
Sbjct: 387 DMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 429
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F + V W MI A+ L+ M +PDKFT ++
Sbjct: 424 GDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLL 483
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C A+E+GK +HG + + D+ V + L+++Y KCG VD ++F ++ +
Sbjct: 484 TGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTA 543
Query: 147 SWTTMISGLAASGDLDAA 164
SWT++I GLA +G A
Sbjct: 544 SWTSIICGLAMNGKTSEA 561
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G D +L +F ++ +W +I L ++G + +AL L++ M G +PD
Sbjct: 517 LIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 576
Query: 79 KFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
TF V+ AC +E+G K+VH + K ++DL + G +D
Sbjct: 577 DITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEH------YGCVIDLLGRAGLLD 630
Query: 132 GGRKMFDKMRVRS 144
++ ++ + +
Sbjct: 631 EAEELIQEIPIEN 643
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Query: 19 LLDLCSFYGKTDHALL---VFSQIRCPHV--FTWNLMIRALTIDGSSLQALLLYNLMICN 73
L++L Y + L VF +I P + W+LMIRA + + +AL LY M+ +
Sbjct: 38 LVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNS 97
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G RP K+T+PFV+KAC AI+ GK +H + F+ DM+V + L+D Y KCG+++
Sbjct: 98 GVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMA 157
Query: 134 RKMFDKMRVRSVVSWTTMISGLA 156
K+FD+M R +V+W MISG +
Sbjct: 158 IKVFDEMPKRDMVAWNAMISGFS 180
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D + ++ + YG A FS+I V ++N +I ++ ++
Sbjct: 335 VKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESF 394
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M +G RPD T V+ AC A+ G HG V G++ + + + LMD+Y
Sbjct: 395 RLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMY 454
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D +++FD M R +VSW TM+ G G
Sbjct: 455 TKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY- 67
+ D + L+D + G+ + A+ VF ++ + WN MI ++ + L+
Sbjct: 134 FATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFL 193
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
++ +G P+ T + A + A+ +GK VHG + GFS D+ V++ ++D+Y K
Sbjct: 194 DMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKS 253
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ R++FD ++ V+W+ MI G
Sbjct: 254 KCIIYARRVFDLDFKKNEVTWSAMIGG 280
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ +G + + + L+D+ + GK D A VF + + +WN M+ I G +AL
Sbjct: 436 VVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEAL 495
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMD 122
L+N M G PD+ T ++ AC S +++GK++ + F+ + + + D
Sbjct: 496 SLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTD 555
Query: 123 LYLKCGDVDGGRKMFDKM 140
L + G +D +KM
Sbjct: 556 LLARAGYLDEAYDFVNKM 573
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
R G SND ++ +LD+ Y K+ +A VF + TW+ MI + +
Sbjct: 233 RMGFSNDLVVKTGILDV---YAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKE 289
Query: 63 ALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A ++ M+ N ++ C + G+ VH AVKAGF D+ VQ+T+
Sbjct: 290 AGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTI 349
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ Y K G + + F ++ ++ V+S+ ++I+G
Sbjct: 350 ISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITG 383
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G+ +D + L+D+ + + + + VFS + +WN ++ +G +A
Sbjct: 232 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEA 291
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ RP F VI AC + GK++HG ++ GF R++F+ S L+D+
Sbjct: 292 LRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDM 351
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG++ RK+FD+M + VSWT +I G A G
Sbjct: 352 YSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHG 387
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
ALLVF + P V W +IR T +AL + M +G PD FP V+K+C
Sbjct: 58 ALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTM 117
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+ + G+ VHG V+ G D++ + LM++Y K +D RK+F+ M + VVS+ T+
Sbjct: 118 MMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTV 177
Query: 152 ISGLAASG 159
I+G A SG
Sbjct: 178 IAGYAQSG 185
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G+ D L+++ S D VF + V ++N +I G A
Sbjct: 131 IVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDA 190
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M + +PD FT V+ + + KGKE+HG ++ G D+++ S+L+D+
Sbjct: 191 LRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDM 250
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K ++ ++F + R +SW ++++G +G + A
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEA 291
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G + + L+D+ S G A +F ++ +W +I + G +A
Sbjct: 333 VLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEA 392
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G +P++ F V+ AC L E + + G ++++ + + D
Sbjct: 393 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 452
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G ++ KMRV S W+T++S + +L+ A
Sbjct: 453 LLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELA 495
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+++GL D +L C+ + D+A +F Q+ P F +N MIR + +
Sbjct: 54 QILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNF 113
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A+ LYN M+ PD FT+P V+KAC I++G ++HG K G D++VQ++L
Sbjct: 114 ENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSL 173
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+++Y KC D++ +F +M +SV SW+ +I+ A+
Sbjct: 174 INMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHAS 210
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ + GL +D + L+++ YGK + + +F ++ V +W+ +I A
Sbjct: 158 VFKLGLEDDVYVQNSLINM---YGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMW 214
Query: 61 LQALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ L L+ M G +R ++ V+ AC A G+ HG +K ++ V ++
Sbjct: 215 WECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTS 274
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LMD+Y+KCG + G +F M ++ +S++ +ISGL G
Sbjct: 275 LMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHG 314
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G L +F + + +++++I L + G QAL +++ M+ G PD
Sbjct: 275 LMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPD 334
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
T+ V+ AC S +++G ++ + + M ++DL + G ++ ++
Sbjct: 335 DVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLV 394
Query: 138 DKMRVRSV-VSWTTMISGLAASGDL 161
M +++ V W +++S +L
Sbjct: 395 QSMPIKANDVLWRSLLSACKVHDNL 419
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLS-NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I+R L + LLV+ ++ C+ D+AL VF+ I P N +R L+
Sbjct: 45 QILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPE 104
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ LL+Y M G D+F+FP ++KA ++ +G E+HGLA K GF D FVQ+ L+
Sbjct: 105 KTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLV 164
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y CG + R MFDKM R VV+W+ MI G SG
Sbjct: 165 RMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ ++A VF+Q+ + W+ MI S +AL L+N M G +PD+ T VI
Sbjct: 303 GQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVI 362
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+++ K +H K GF + + + L+++Y KCG ++ R++FDKM ++V+
Sbjct: 363 TACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVI 422
Query: 147 SWTTMISGLAASGDLDAA 164
SWT MIS A GD +A
Sbjct: 423 SWTCMISAFAMHGDAGSA 440
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G +D + L+ + + G+ A L+F ++ V TW++MI G ALL
Sbjct: 150 KLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALL 209
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M PD+ V+ AC + + GK +H ++ D +QS L+ +Y
Sbjct: 210 LFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYA 269
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
CG +D +F+KM +++V+ T M++G + G ++ A
Sbjct: 270 SCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENA 308
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ + G + A +F ++ +V +W MI A + G + AL ++ M P+
Sbjct: 396 LIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC + +E+G+++ + + + + ++DL+ + + ++
Sbjct: 456 GITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELV 515
Query: 138 DKMRV-RSVVSWTTMISGLAASGDLD 162
+ M + +V+ W ++++ G+++
Sbjct: 516 EAMPLAPNVIIWGSLMAACRVHGEIE 541
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++ G D L KL+++ SF+ D+A VF + R ++ +N + RAL++ G
Sbjct: 94 RHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGE 153
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
+ L +Y M G D+FT+ +V+KAC+AS + KG+E+H ++ G+ + +
Sbjct: 154 EVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIM 213
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TL+D+Y K G V +F++M V++VVSW+ MI+ A +G
Sbjct: 214 TTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNG 255
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R+G ++ L+D+ + +G +A VF+Q+ +V +W+ MI +G + +A
Sbjct: 201 ILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEA 260
Query: 64 LLLYN--LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L+ ++ P+ T V++AC A A+E+G+ +HG ++ G + V S L+
Sbjct: 261 LELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALV 320
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG ++ G+++FD+M R VVSW ++IS G
Sbjct: 321 TMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHG 358
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L G+ QAL L +L P + T+ +I +C ++ + VH ++
Sbjct: 43 NKLIQSLCKQGNLTQALELLSLEP----NPAQHTYELLILSCTHQNSLLDAQRVHRHLLE 98
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
GF +D F+ + L+++Y +D RK+FDK R R++ + + L+ +G
Sbjct: 99 NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAG 150
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL + ++ L+ + + GK + VF Q+ V +WN +I + + G +A
Sbjct: 304 ILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKA 363
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ ++ M NG P +F V+ AC + +++GK + + + V G + + ++D
Sbjct: 364 IGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVD 423
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
L + ++ K+ + MR+
Sbjct: 424 LLGRANRLEEAAKIIENMRIE 444
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G+ +D + L+D+ + + + + VFS++ C +WN ++ +G +A
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ +P F VI AC + GK++HG ++ GF ++F+ S L+D+
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDM 387
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG++ RK+FD+M V VSWT +I G A G
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D VF + V ++N +I G AL + M +PD FT V+
Sbjct: 193 DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIF 252
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+ + KGKE+HG ++ G D+++ S+L+D+Y K ++ ++F ++ R +SW
Sbjct: 253 SEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWN 312
Query: 150 TMISGLAASGDLDAA 164
++++G +G + A
Sbjct: 313 SLVAGYVQNGRYNEA 327
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 36/160 (22%)
Query: 36 FSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95
F ++ P V W +IR T +AL + M +G PD FP V+K+C + +
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK-----------------------CGD--- 129
G+ VHG V+ G D++ + LM++Y K GD
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 130 ----------VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D R++F+ M + VVS+ T+I+G A SG
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSG 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G ++ + L+D+ S G A +F ++ +W +I + G +A
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G +P++ F V+ AC L E + + G ++++ + + D
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 488
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G ++ KM V S W+T++S + +L+ A
Sbjct: 489 LLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELA 531
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
++TWNLMIR T +G Q L +Y+ M +G + T+P ++KAC +I+ G +HG
Sbjct: 11 LYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHG 70
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
+K GF D FVQ+ L+D+Y KC V R++FD+M RSVVSW M+S + +D
Sbjct: 71 HVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQ 130
Query: 164 A 164
A
Sbjct: 131 A 131
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G D + L+D+ S A VF ++ V +WN M+ A + S Q
Sbjct: 71 HVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQ 130
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE---KGKEVHGLAVKAGFSR-DMFVQS 118
AL L M GF P TF ++ + E GK +H +K G ++ + +
Sbjct: 131 ALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLAN 190
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+LM +Y++ +D RK+FD M +S++SWTTMI G G
Sbjct: 191 SLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIG 231
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F I + +W MI G +AL L+ MI RP+ T V+
Sbjct: 301 GNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVV 360
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++ G+E+ G D VQ++L+ +Y KCG + R++F+++ + +
Sbjct: 361 SACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLT 420
Query: 147 SWTTMISGLAASG 159
WT+MI+ A G
Sbjct: 421 VWTSMINSYAIHG 433
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D A VF + + +W MI G +++A L+ M D F +I C
Sbjct: 203 DEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGC 262
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
I + VH L +K G + V++ L+ +Y KCG++ R++FD + +S++SWT
Sbjct: 263 IQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWT 322
Query: 150 TMISGLAASG 159
+MI+G G
Sbjct: 323 SMIAGYVHLG 332
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 2 QKIIRY----GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
Q+I Y GL +DQ + L+ + S G A VF ++ + W MI + I
Sbjct: 373 QEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIH 432
Query: 58 GSSLQALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMF 115
G +A+ L++ M G PD + V AC S +E+G K + G + +
Sbjct: 433 GMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVE 492
Query: 116 VQSTLMDLYLKCGDVD 131
+ L+DL + G +D
Sbjct: 493 HCTCLIDLLGRVGQLD 508
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + KL+ L F+G T A LVF QI P + W +M+R ++ S++ + LY
Sbjct: 71 GLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLY 130
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+L++ +GFR D F +KAC ++ GK++H VK S D V + L+D+Y KC
Sbjct: 131 DLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKC 189
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
G++ K+F+ + +R+VV WT+MI+G
Sbjct: 190 GEIKSAHKVFNDITLRNVVCWTSMIAG 216
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 83/155 (53%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S D +++ LLD+ + G+ A VF+ I +V W MI + + L+L+N
Sbjct: 173 SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNR 232
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M N +++T+ +I AC A+ +GK HG VK+G + ++L+D+Y+KCGD
Sbjct: 233 MRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGD 292
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R++F++ +V WT MI G +G ++ A
Sbjct: 293 ISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 327
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF + WN +I + +GS +AL L++ M P+ T + AC +
Sbjct: 396 AKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACAS 455
Query: 92 SLAIEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ G +H +VK GF S + V + L+D Y KCGD R +FD + ++ ++W+
Sbjct: 456 LGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWS 515
Query: 150 TMISGLAASGD 160
MI G GD
Sbjct: 516 AMIGGYGKQGD 526
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G+ LV LLD+ G +A VF++ + W MI T +GS +A
Sbjct: 268 LVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 327
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +P+ T V+ C +E G+ VHGL++K G D V + L+ +
Sbjct: 328 LSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANALVHM 386
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC + +F+ + +V+W ++ISG + +G + A
Sbjct: 387 YAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEA 427
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD + G A L+F I + TW+ MI G ++ +L L+ M+ +P+
Sbjct: 486 LLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPN 545
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++ AC + + +GK+ K F+ + ++D+ + G+++ +
Sbjct: 546 ESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDII 605
Query: 138 DKMRVRSVV 146
+KM ++ V
Sbjct: 606 EKMPIQPDV 614
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 85/162 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I L + L+ ++ C A L F+ I PHVF N +IRA +
Sbjct: 34 QLILQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHT 93
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L LY M N P+ +TFPFV+K+ + G+ VH VK+G + D++VQ+TLMD
Sbjct: 94 PLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMD 153
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CG + +K+FD+M VVSWT +I G S LD A
Sbjct: 154 VYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDA 195
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++D + L+D+ + GK VF ++ V +W ++I + A
Sbjct: 136 VVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDA 195
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+++ M G P++ T + AC + AIE G +H + D+ + + L+D+
Sbjct: 196 LIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDM 255
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG + +F M+ ++V +W I+GLA++
Sbjct: 256 YGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASA 290
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ G+ AL VF ++ +V+TWN+ I L +A+ + M
Sbjct: 245 DVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEAIAWFKRMD 304
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKE-----VHGLAVKAGFSRDMFVQSTLMDLYLK 126
G D T V+ AC S + G++ +HG + GFS + S ++D+ +
Sbjct: 305 EEGVEADDVTLVAVLSACSHSGLVNSGRQIFWSLIHG---RFGFSPGIKHYSCMVDILAR 361
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
G ++ M + M + S W ++++G A G L+ +
Sbjct: 362 NGCIEEACVMINDMPFEATRSMWGSLLTGSRAHGSLEVS 400
>gi|297791795|ref|XP_002863782.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309617|gb|EFH40041.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 590
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L N + R L+ L G+ +A VF Q+ V +N MI + + + L LY
Sbjct: 37 NLLNGSSISRDLVALYGRIGEISYARKVFDQLPQRSVSVYNSMIVVYSRGNNPNEVLKLY 96
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ MI +PD TF IKAC++ +A+EKG+ V AV+ G+ D+FV S++++LY+KC
Sbjct: 97 DQMISERVKPDSSTFTITIKACLSGMALEKGEAVWSKAVEFGYKNDVFVCSSVLNLYMKC 156
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G ++ +F KM R V+ WTTM++G A G
Sbjct: 157 GKMNEAEVLFRKMTKRDVICWTTMVTGFAQGG 188
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 81/157 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K + +G ND + +L+L GK + A ++F ++ V W M+ G S++
Sbjct: 133 KAVEFGYKNDVFVCSSVLNLYMKCGKMNEAEVLFRKMTKRDVICWTTMVTGFAQGGKSMK 192
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ Y M GF D+ +++A + G+ VHG ++ G + V+++L+D
Sbjct: 193 AVEFYREMQNEGFGRDRVVMLGLLQASGDLGDPKMGRSVHGYLIRTGLPMNTVVETSLVD 252
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G ++ +MF +M ++ V+W ++ISG A +G
Sbjct: 253 MYAKVGFIEVAFRMFSRMMFKTAVTWGSLISGFAQNG 289
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR GL + ++ L+D+ + G + A +FS++ TW +I +G + A
Sbjct: 235 LIRTGLPMNTVVETSLVDMYAKVGFIEVAFRMFSRMMFKTAVTWGSLISGFAQNGLANYA 294
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
M GF+ D T V+ AC ++ G VH +K D + LMD+
Sbjct: 295 FEAVLEMQSLGFQLDLATLVGVLVACSQVGSLTTGISVHCYILKRHV-LDRITATALMDM 353
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y KCG + R +F+ + + +V W TMIS
Sbjct: 354 YSKCGALSSSRVIFEHVGRKDLVCWNTMIS 383
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 85/162 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I L + L+ ++ C A L F+ I PHVF N +IRA +
Sbjct: 34 QLILQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHT 93
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L LY M N P+ +TFPFV+K+ + G+ VH VK+G + D++VQ+TLMD
Sbjct: 94 PLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMD 153
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CG + +K+FD+M VVSWT +I G S LD A
Sbjct: 154 VYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDA 195
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++D + L+D+ + GK VF ++ V +W ++I + A
Sbjct: 136 VVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDA 195
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+++ M G P++ T + AC + AIE G +H + D+ + + L+D+
Sbjct: 196 LIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDM 255
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG + +F M+ ++V +W I+GLA++
Sbjct: 256 YGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASA 290
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ G+ AL VF ++ +V+TWN+ I L +A+ + M
Sbjct: 245 DVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEAIAWFKRMD 304
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKE-----VHGLAVKAGFSRDMFVQSTLMDLYLK 126
G D T V+ AC S + G++ +HG + GFS + S ++D+ +
Sbjct: 305 EEGVEADDVTLVAVLSACSHSGLVNSGRQIFWSLIHG---RFGFSPGIKHYSCMVDILAR 361
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
G ++ M M + S W ++++G A G L+ +
Sbjct: 362 NGCIEEACVMIKDMPFEATRSMWGSLLTGSRAHGSLEVS 400
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I+ GLS+D L +++ C + G ++A VF I P +F WN MI+ +
Sbjct: 31 IKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPEN 90
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y LM+ + +PD+FTFPF +K +A++ GKE+ AVK GF ++FVQ +
Sbjct: 91 GVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIH 150
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ CG VD K+FD VV+W M+SG
Sbjct: 151 MFSLCGIVDLAHKVFDMGDACEVVTWNIMLSG 182
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A VF ++ V +W MI + AL L+ M + +PD+FT ++
Sbjct: 230 GEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSIL 289
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ V K D FV + L+D+Y KCG+V +K+F +M +
Sbjct: 290 IACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKF 349
Query: 147 SWTTMISGLAASGDLDAA 164
+WTTMI GLA +G + A
Sbjct: 350 TWTTMIVGLAINGHGEEA 367
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ +++G ++ + + + + S G D A VF V TWN+M+
Sbjct: 130 LNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSG------- 182
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
YN + F+ K V+ AC +E GK + + G MF
Sbjct: 183 ------YNRV--KQFKISKMLL--VLSACSKLKDLEWGKHIFKY-INGGIVEHMFAA--- 228
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
CG++D + +FD M+ R VVSWT MI G
Sbjct: 229 ------CGEMDEAQGVFDNMKTRDVVSWTAMIDG 256
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND + L+D+ G A VF ++ FTW MI L I+G +AL +++ M
Sbjct: 315 NDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNM 374
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGK 99
I PD+ T+ V+ AC+ ++KGK
Sbjct: 375 IEASVTPDEITYIGVLCACM----VDKGK 399
>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
Length = 2076
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 92/161 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G +D + +LD+ G +A +VF+ I P W MI +G+ QA
Sbjct: 492 VIKAGFXSDLYVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQA 551
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y+ M +G PD++TF +IKA A+E+G+++H +K D FV ++L+D+
Sbjct: 552 LRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGRQLHANVIKLDCVSDPFVGTSLVDM 611
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+++ ++F KM VR++V W M+ G+A G+ + A
Sbjct: 612 YAKCGNIEDXYRLFKKMNVRNIVLWNAMLVGIAQHGNAEEA 652
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 85/153 (55%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ S GK + A L+F + WN M+ I +AL L++L+
Sbjct: 399 DSFVATALIDVYSRSGKMEEAELLFQNKDDLDLACWNAMMFGYIISNDGNKALGLFSLIN 458
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G + D+ T KAC + +++GK++H +KAGF D++V S ++D+Y+KCGD+
Sbjct: 459 RSGEKSDQITLATAAKACGCLVLLDZGKQIHAHVIKAGFXSDLYVNSGILDMYIKCGDMV 518
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+F+ + V+WT+MISG +G+ D A
Sbjct: 519 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQA 551
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRAL-----TID 57
+I+ G + D L LL L S G A VF + TWN ++ A + D
Sbjct: 109 RIVVSGTAGDHFLTNNLLTLYSKCGSLSFACQVFDTTPERDLVTWNAILGAYASSVDSND 168
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G++ + L L+ L+ + + T V+K C S + K VHG A+K G D+FV
Sbjct: 169 GNAQEGLHLFRLLRESLGSTTRMTLAPVLKLCSNSXCLWAAKGVHGYAIKIGLVWDVFVF 228
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
TLM++Y KCG + R +FD MR R VV W M+ G G
Sbjct: 229 GTLMNIYSKCGRMXDARLLFDGMRERDVVLWNMMLKGYVQLG 270
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ +D + L+D+ + G + +F ++ ++ WN M+ + G++ +
Sbjct: 592 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDXYRLFKKMNVRNIVLWNAMLVGIAQHGNAEE 651
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M +G PD+ +F ++ AC +A L E + H + G ++ S L+
Sbjct: 652 AVNLFKSMKSHGIEPDRVSFIGILSACSLAGLTSEAYEYFHSMPNDCGIEPEIEHYSCLV 711
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D G V K+ + M ++ S + G
Sbjct: 712 DALGXAGLVQEXDKVIETMPFKASASMNRALLG 744
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 9/164 (5%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL D + L+++ S G+ A L+F +R V WN+M++ G +A
Sbjct: 217 IKIGLVWDVFVFGTLMNIYSKCGRMXDARLLFDGMRERDVVLWNMMLKGYVQLGLEKEAF 276
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK----EVHGLAVKAGFS---RDMFVQ 117
L++ +G PD+F+ ++ + + ++GK +V K S D+F
Sbjct: 277 QLFSEFHRSGLXPDEFSVQLILNG-VFEVNXDEGKWHADQVQAYXXKLSLSDDNXDVFCW 335
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVV-SWTTMISGLAASGD 160
+ + YL GD G + F M +V T++ LAA D
Sbjct: 336 NKKLSEYLWAGDNWGAIECFVNMNGLNVXYDXVTLLEVLAAVAD 379
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ I++ + GK H V +G + D F+ + L+ LY KCG + ++FD R
Sbjct: 90 LLRTAISTHNLLLGKCTHARIVVSGTAGDHFLTNNLLTLYSKCGSLSFACQVFDTTPERD 149
Query: 145 VVSWTTMISGLAASGD 160
+V+W ++ A+S D
Sbjct: 150 LVTWNAILGAYASSVD 165
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
VF WN + G + A+ + M D T V+ A L I + VH
Sbjct: 332 VFCWNKKLSEYLWAGDNWGAIECFVNMNGLNVXYDXVTLLEVLAAVADGLNISRQIHVH- 390
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
A+K D FV + L+D+Y + G ++ +F + W M+ G S D +
Sbjct: 391 -ALKTSNIADSFVATALIDVYSRSGKMEEAELLFQNKDDLDLACWNAMMFGYIISNDGNK 449
Query: 164 A 164
A
Sbjct: 450 A 450
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI----DGS 59
+I GL+ D L V K ++ CS G +A VF+ CP+ + N MIRAL++ +
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAH 97
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
S+ A+ +Y + +PD FTFPFV+K + + G+++HG V GF + V +
Sbjct: 98 SI-AITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTG 156
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y CG + RKMFD+M V+ V W +++G G++D A
Sbjct: 157 LIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEA 201
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 12 DQLLVRKLL---DLCSFYGKT---DHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQA 63
D++LV+ + L + YGK D A + + C + +W +I G + +A
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M+ PD+ T V+ AC ++E G+ + G +R + + + ++D+
Sbjct: 235 IEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDM 294
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G++ +F+ + R+VV+WTT+I+GLA G
Sbjct: 295 YAKSGNITKALDVFECVNERNVVTWTTIIAGLATHG 330
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++ L ++D+ + G AL VF + +V TW +I L G +AL ++
Sbjct: 280 GMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMF 339
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
N M+ G RP+ TF ++ AC ++ GK + + + K G ++ ++DL +
Sbjct: 340 NRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGR 399
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
G + ++ M ++ + W ++++ DL+
Sbjct: 400 AGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLE 436
>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 543
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 71/120 (59%)
Query: 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
F WN MIRA G + L LY LM G + +TFPF+ KAC ++ + +GK HG
Sbjct: 106 FLWNTMIRAYANAGLCFETLELYMLMRRAGVSSNNYTFPFIFKACASNSLLLQGKVAHGD 165
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
AVKA F D++V++ L+D+Y KCG GRK+FD+M V+ +V WT MI+ D A
Sbjct: 166 AVKADFDSDVYVKAALVDMYAKCGQFCDGRKIFDEMPVKDLVCWTAMITAYEQGEKPDEA 225
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR + + +L + + G + + L+F + +V +WN M+ T +G + +AL
Sbjct: 268 IRRSFLKEIFVANSILAMHTKCGNMEKSCLIFDMMDERNVISWNSMLSGYTQNGQASEAL 327
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M +G P+ T ++ AC + G + H + + DM +++ LMD+Y
Sbjct: 328 FLFDKMRDSGCEPNSVTALIMVAACAYLGSRHLGGKFHDFILDSKMKIDMNLRNALMDMY 387
Query: 125 LKCGDVDGGRKMFDKMRV--RSVVSWTTMISGLAASG 159
KCGD+ +MF+ + R+V SW +ISG G
Sbjct: 388 AKCGDLKTAVEMFNDVHPSERNVSSWNVLISGYGMHG 424
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ +D + L+D+ + G+ +F ++ + W MI A +AL
Sbjct: 167 VKADFDSDVYVKAALVDMYAKCGQFCDGRKIFDEMPVKDLVCWTAMITAYEQGEKPDEAL 226
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+L M +G PD+ T V A + + VH A++ F +++FV ++++ ++
Sbjct: 227 ILLRKMQQHGLFPDEVTMVSVASAIGQLWDAKWAQSVHAYAIRRSFLKEIFVANSILAMH 286
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG+++ +FD M R+V+SW +M+SG +G A
Sbjct: 287 TKCGNMEKSCLIFDMMDERNVISWNSMLSGYTQNGQASEA 326
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNL 69
D L L+D+ + G A+ +F+ + +V +WN++I + G +AL LY+
Sbjct: 376 DMNLRNALMDMYAKCGDLKTAVEMFNDVHPSERNVSSWNVLISGYGMHGHGKEALRLYSR 435
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
M P+ TF ++ AC + I++G+ +
Sbjct: 436 MQEESVEPNHITFTSILSACSHAGLIDEGRNL 467
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
Query: 14 LLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI-DGSSLQALLLYNLM 70
L+ K+L S G ++A +F+QI P +F +N +IR + S + LY M
Sbjct: 163 FLLSKILSFSALSPLGDLNYARKIFAQIPNPGIFPYNTIIRGCSYAKNPSREPYFLYKSM 222
Query: 71 ICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+ GF R + FT FV+KAC + +A E+G+++H +++GFS + +VQS+L+ LY KC +
Sbjct: 223 VTRGFPRANTFTMAFVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEE 282
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +++FD++ R++V W+ MISG A G ++ A
Sbjct: 283 IRLAKQVFDEITERNLVCWSAMISGYARVGMVNEA 317
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGS 59
+I+R G S + + L+ L YGK + L VF +I ++ W+ MI G
Sbjct: 257 RILRSGFSLNPYVQSSLVSL---YGKCEEIRLAKQVFDEITERNLVCWSAMISGYARVGM 313
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL ++ M G PD+ + VI AC + A++ G+ +H K D+ + +
Sbjct: 314 VNEALSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTA 373
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y KCG ++ +++FD M V+ +W++MI GLA G
Sbjct: 374 LVNMYAKCGCIEKAKEIFDYMPVKDSKAWSSMIVGLAIHG 413
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 88/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR GL D+++ LLDL G + A +F Q+ + +W MI DG +
Sbjct: 222 LIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEG 281
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ ++ +G RP+++TF V+ AC A + GKEVHG + G+ F S L+ +
Sbjct: 282 FSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHV 341
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+ + R++F++M +VSWT++I G A +G D A
Sbjct: 342 YSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMA 382
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 21 DLCSF---------YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
DLCS+ G+ + A +F ++ F+WN +I G ++AL L+ +M
Sbjct: 128 DLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQ 187
Query: 72 CN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
N + FT + A A ++ +GKE+HG +++G D V + L+DLY KCG +
Sbjct: 188 ENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSL 247
Query: 131 DGGRKMFDKMRVRSVVSWTTMI 152
+ R +FD+M + +VSWTTMI
Sbjct: 248 NEARGIFDQMADKDIVSWTTMI 269
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+P + +I AC+ +E GK VH + F + + + L+ +Y KCG + +
Sbjct: 60 QPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQM 119
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD++ + + SW TMISG A G ++ A
Sbjct: 120 LFDEIPQKDLCSWNTMISGYANVGRIEQA 148
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G L+ + S G T+ A VF+Q+ P + +W +I +G A
Sbjct: 323 MTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMA 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L + ++ +G +PD+ TF V+ AC + ++ G E H + K G + ++D
Sbjct: 383 LQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVID 442
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
L + G + D M ++ W +++ G G+++ A
Sbjct: 443 LLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELA 485
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++IR G S D +V +LL CS D+A +F P+V+ + +I G+ L+
Sbjct: 71 QLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLE 130
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY+ M+ PD + ++KAC + LA+ +G+EVH A+K GFS + V+ +M+
Sbjct: 131 AIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIME 190
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG++ R++F++M VV+ T MIS + G ++ A
Sbjct: 191 LYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEA 231
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 73/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VFS++R W MI + + +AL + M RP++FT V+
Sbjct: 226 GLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVL 285
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ VH K ++FV + L+++Y +CG +D + +FD+M+ R V+
Sbjct: 286 SACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVI 345
Query: 147 SWTTMISGLAASG 159
++ TMISGL+ +G
Sbjct: 346 TYNTMISGLSMNG 358
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G D A VF +++ V T+N MI L+++G S QA+ L+ +M+ RP
Sbjct: 319 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPT 378
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC ++ G E+ H +A + ++DL + G ++ +
Sbjct: 379 NVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLI 438
Query: 138 DKMRV 142
M++
Sbjct: 439 RTMKM 443
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I GL + L+ K ++ C +G ++A F ++ P + WN +I+ T
Sbjct: 24 QLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDA 83
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y M + P+ FTF +V+KAC + GK++HG K GF ++FVQ++L+
Sbjct: 84 PIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVS 143
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+Y K G + R +FDK+ R+VVSWT++ISG +GD
Sbjct: 144 MYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 181
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL + +V L + + G + A F+++ P++ WN MI +G +A
Sbjct: 227 VTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEA 286
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ MI R D T + A ++E + + G K+ + D FV + L+D+
Sbjct: 287 IKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDM 346
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R +FD++ + VV W+ MI G G A
Sbjct: 347 YAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEA 387
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ +YG ++ + L+ + + +G+ +A +VF ++ V +W +I +G ++
Sbjct: 125 QTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPME 184
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M +PD V+ A + +GK +HGL K G + + +L
Sbjct: 185 ALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTT 244
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G V+ R F++M +++ W MISG A +G
Sbjct: 245 MYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNG 281
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+D + L+D+ + G A VF ++ V W++MI + G +A+ LYN M
Sbjct: 335 DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEM 394
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G P+ TF ++ AC S +++G E+ L G S ++DL + G +
Sbjct: 395 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYL 454
Query: 131 DGGRKMFDKMRVRSVVS-WTTMISG 154
+ M ++ VS W ++S
Sbjct: 455 NQAYDFIMSMPIKPGVSVWGALLSA 479
>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L KL+ + + G A LVF +IR P+VF N M+ A +G +A+ + M +
Sbjct: 62 LNSKLVGMYASCGDVKSATLVFKRIRNPNVFALNWMVLASAFEGYYKEAIGYFCSMKDSV 121
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
F +K+TF V+KA + L + KGKEVH + + GF D+ V + L+D+Y KCG + R
Sbjct: 122 FIYNKYTFSIVLKAFVGLLDLNKGKEVHSMVKQLGFESDVCVANALVDMYSKCGCIGYAR 181
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R +VSWT+MISG G ++ A
Sbjct: 182 TVFDRMAKRDIVSWTSMISGYCNVGKIEEA 211
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQA 63
GL + L+ + G +D A + S++ P + TWN MI + A
Sbjct: 222 GLEPNDFTWNALISGYARRGDSDGAFSLLSKMTREGLVPDLVTWNAMIAGFVQGERAGDA 281
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMD 122
L+ M+ G +P+ T ++ AC +I++G+ +HGL + F + F+ S L+D
Sbjct: 282 FKLFQDMLVLGVKPNLVTVAGLLPACGMVSSIQRGRAIHGLVYRLEFDISNAFIASALID 341
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y +CG R +F+K+ ++V SW MI G ++ +
Sbjct: 342 MYSECGSFKEARTVFEKIHNKNVASWNAMIGCYGKHGMVNTS 383
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ + +SN + L+D+ S G A VF +I +V +WN MI G ++
Sbjct: 326 LEFDISN-AFIASALIDMYSECGSFKEARTVFEKIHNKNVASWNAMIGCYGKHGMVNTSI 384
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
L+ M G + + T V+ AC S +EKG E+
Sbjct: 385 QLFERMHGEGIQANDVTLLCVLSACSHSGYVEKGLEI 421
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 39/152 (25%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D + L+D+ S G +A VF ++ + +W MI G +AL+L+
Sbjct: 156 GFESDVCVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMISGYCNVGKIEEALVLF 215
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G P+ FT+ + L+ Y +
Sbjct: 216 ERMKLEGLEPNDFTW-----------------------------------NALISGYARR 240
Query: 128 GDVDGGRKMFDKMR----VRSVVSWTTMISGL 155
GD DG + KM V +V+W MI+G
Sbjct: 241 GDSDGAFSLLSKMTREGLVPDLVTWNAMIAGF 272
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
++K C+ + GK+VH V G R + + S L+ +Y CGDV +F ++R
Sbjct: 30 LLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLVFKRIRNP 89
Query: 144 SVVSWTTMISGLAASG 159
+V + M+ A G
Sbjct: 90 NVFALNWMVLASAFEG 105
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 90/157 (57%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL L+ K++ + G D ++ VF+ I P +N MIRA G + + + Y
Sbjct: 100 GLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATY 159
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M GF D FTFPFV+K+ + L++ GK VHGL ++ G D++V ++L+ LY KC
Sbjct: 160 FSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKC 219
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G+++ K+FD M +R V SW +++G SG +DAA
Sbjct: 220 GEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAA 256
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC--NGFRPDKFTFPF 84
G D AL +F ++ ++ +W MI + G + QAL L++ M+ +G RP+ T
Sbjct: 251 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 310
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM--RV 142
V+ AC +E+G+++H LA + G + + V L +Y KCG + R FDK+
Sbjct: 311 VLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNE 370
Query: 143 RSVVSWTTMISGLAASG 159
+++++W TMI+ A+ G
Sbjct: 371 KNLIAWNTMITAYASYG 387
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEV 101
++ WN MI A G LQA+ + MI G +PD TF ++ C S ++ G K
Sbjct: 372 NLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYF 431
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGD 160
+ ++ + + + + DL + G + K+ +M + + S W ++++ +
Sbjct: 432 NHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRN 491
Query: 161 LDAA 164
L+ A
Sbjct: 492 LEMA 495
>gi|414864687|tpg|DAA43244.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 658
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 72/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A F+ + P F N+MIR G L AL Y M+ RPD+FTFP V+
Sbjct: 70 GRMDEAADAFAGVSSPGAFLHNVMIRGFADAGLPLDALAAYRAMLAASARPDRFTFPVVV 129
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
K C + A+ +G+ H +K G DM+ ++L+ LY K G V ++FD M R +V
Sbjct: 130 KCCTRAGALGEGRAAHAAVIKLGLGADMYTANSLVALYAKLGLVGDAERVFDGMPARDIV 189
Query: 147 SWTTMISGLAASG 159
SW TM+ G ++G
Sbjct: 190 SWNTMVDGYVSNG 202
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +L LL++ GK + + +F Q+ V TWN MI A +A
Sbjct: 351 VVRRHFLPHVVLETALLEMYGNVGKVESSEKIFGQMTEKTVVTWNNMIAAYIYMEMYQEA 410
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ ++ PD FT V+ A + ++ + +++H +K G+ + + +M +
Sbjct: 411 IALFLELLNQPLYPDYFTMTTVVPAFVLLGSLRQCRQMHSYIIKLGYGDSTLIMNAVMHM 470
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y +CGD+ R++FDKM + V+SW T+I G A G
Sbjct: 471 YARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQ 507
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL D L+ L + G A VF + + +WN M+ +G A
Sbjct: 148 VIKLGLGADMYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALA 207
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + M R D + AC A+ +G+E+HG A++ G +D+ V ++L+D
Sbjct: 208 LACFRDMNDALRVRHDGVGVIAALAACCLESALAQGREIHGYAIRHGLEQDVKVGTSLVD 267
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+Y KCG+V +F M +R+VV+W +I G A
Sbjct: 268 MYCKCGNVLYAENVFATMLLRTVVTWNCLIGGYA 301
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR+GL D + L+D+ G +A VF+ + V TWN +I ++ + A
Sbjct: 251 IRHGLEQDVKVGTSLVDMYCKCGNVLYAENVFATMLLRTVVTWNCLIGGYALNERPVDAF 310
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M GF+ + T ++ AC + + G+ VH V+ F + +++ L+++Y
Sbjct: 311 DCFMQMRAEGFQVEAVTAINLLAACGQTESSLYGRSVHAYVVRRHFLPHVVLETALLEMY 370
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
G V+ K+F +M ++VV+W MI+
Sbjct: 371 GNVGKVESSEKIFGQMTEKTVVTWNNMIA 399
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G + L++ ++ + + G + +F ++ V +WN +I I G A
Sbjct: 452 IIKLGYGDSTLIMNAVMHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKTA 511
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L +++ M CNG P++ TF V+ AC ++ L E KE + + + G + + D
Sbjct: 512 LEMFDEMKCNGIEPNESTFVSVLTACSVSGLETEGWKEFNSMQHEYGMVPQIEHYGCMTD 571
Query: 123 LYLKCGDVDGGRKMF-DKMRVRSVVSW 148
L + G+ + +K VR V++
Sbjct: 572 LLGRADPFASGKTVLPNKHSVRLAVAF 598
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+ + S G + A VF + V +WN MI + G +A+ L+ M
Sbjct: 85 DIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQ 144
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G +P++ +F ++ AC + +E G+++H KAG+ D+ V + L+++Y KCG ++
Sbjct: 145 REGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLE 204
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+F++MR R+VVSWT MISG GD A
Sbjct: 205 LARKVFNEMRERNVVSWTAMISGYVQHGDSKEA 237
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL + L+ L+ + + G +A VF +R P+ +WN MI +G +A
Sbjct: 279 IKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYG-EGFMEEA 337
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M GF+PD+FT+ ++ C + +GKE+H V+ + D+ V + L+ +
Sbjct: 338 FRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISM 397
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y KCG ++ RK+F++M ++ VSW I+
Sbjct: 398 YAKCGSLEEARKVFNQMPEKNAVSWNAFIA 427
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 84/151 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G +D + L+++ G + A VF+++R +V +W MI G S +A
Sbjct: 178 ITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEA 237
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+L+ +I +G +P+K +F ++ AC +E+G ++H +AG +++ V + L+ +
Sbjct: 238 FVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISM 297
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y +CG + R++FD +R + VSW MI+G
Sbjct: 298 YARCGSLANARQVFDNLRSPNRVSWNAMIAG 328
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI ++G+ ++ L+ L+ + GK A VF +IR + +WN MI A G++
Sbjct: 479 KIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGS 538
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L+ G + DK+TF V++A IA+L ++ G+++HGL KAG +D+ + +TL+
Sbjct: 539 AFDLFIKYKSEGGKGDKYTFINVLRA-IANLEDLDAGRKIHGLVEKAGLEKDIRILTTLI 597
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+Y KCG + +F ++ + VV W M++ S
Sbjct: 598 KMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHS 634
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+R D + L+ + + G + A VF+Q+ + +WN I GS +
Sbjct: 378 QIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKE 437
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M + PD TF ++ +C + E+G+ +HG + G + V + L+
Sbjct: 438 AFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALIS 497
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG + R++F ++R R + SW MI+ G
Sbjct: 498 MYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHG 534
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++ C+ + ++ +GK+VH A F D+++ + L+ +Y KCG ++ +F M + V
Sbjct: 58 LQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDV 117
Query: 146 VSWTTMISGLAASG 159
VSW MISG A G
Sbjct: 118 VSWNAMISGYALHG 131
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D ++ L+ + S G A VF ++ V WN M+ A A
Sbjct: 581 VEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQDA 640
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
L L+ M G PD T+ V+ AC AIE GK+ H +A D
Sbjct: 641 LKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEAAMETD 690
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II G + L KL+ + + + A VF + VF WN +I+ G
Sbjct: 29 QIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYANLGPF 88
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++AL +Y M C+G +++TFPFV+KAC A +KG+ +HG VK G D+FV + L
Sbjct: 89 MEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNAL 148
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y KC ++ R++FD + + +V+W +MISG A +G D A
Sbjct: 149 VAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDA 192
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 10/168 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++GL D + L+ +FY K + + VF I + TWN MI I+G +
Sbjct: 133 VVKHGLDLDLFVGNALV---AFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCA 189
Query: 61 LQALLLY-NLMICNG---FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
AL+L+ N++ G + PD T ++ AC + AI++G +H +K+G D +
Sbjct: 190 DDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAAL 249
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S L+ +Y CG ++ R +FD++ +++V W +I G D A
Sbjct: 250 GSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEA 297
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC--GDVDGGRK 135
+ + + ++++ C + I K +H + GF + F+ + L+ Y +C +++ RK
Sbjct: 6 NSYDYTYLLQRCKGTKTI---KSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARK 62
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD + R V W T+I G A G
Sbjct: 63 VFDCLPDRDVFVWNTIIQGYANLG 86
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G+ D L L+ + + G + A VF +I ++ WN +IR + G + +A
Sbjct: 238 VIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEA 297
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +++ +I +G PD F ++ A + + +G E+ G + ++++D+
Sbjct: 298 LKMFSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASVVDI 357
Query: 124 YLKCG 128
+ G
Sbjct: 358 LGRAG 362
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I GL + L+ K ++ C +G ++A F ++ P + WN +I+ T
Sbjct: 9 QLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDA 68
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y M + P+ FTF +V+KAC + GK++HG K GF ++FVQ++L+
Sbjct: 69 PIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVS 128
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+Y K G + R +FDK+ R+VVSWT++ISG +GD
Sbjct: 129 MYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 166
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL + +V L + + G + A F+++ P++ WN MI +G +A
Sbjct: 212 VTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEA 271
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ MI R D T + A ++E + + G K+ + D FV + L+D+
Sbjct: 272 IKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDM 331
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R +FD++ + VV W+ MI G G
Sbjct: 332 YAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHG 367
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ +YG ++ + L+ + + +G+ +A +VF ++ V +W +I +G ++
Sbjct: 110 QTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPME 169
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M +PD V+ A + +GK +HGL K G + + +L
Sbjct: 170 ALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTT 229
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G V+ R F++M +++ W MISG A +G
Sbjct: 230 MYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNG 266
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+D + L+D+ + G A VF ++ V W++MI + G +A+ LYN M
Sbjct: 320 DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEM 379
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G P+ TF ++ AC S +++G E+ L G S ++DL + G +
Sbjct: 380 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYL 439
Query: 131 DGGRKMFDKMRVRSVVS-WTTMISG 154
+ M ++ VS W ++S
Sbjct: 440 NQAYDFIMSMPIKPGVSVWGALLSA 464
>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
L KLL L + G+ + A +F Q+ R F WN +I G A+ LY M
Sbjct: 116 LSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEE 175
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G PD+FTFP V+KAC +I G+EVH V+ GF+ D FV + L+D+Y KCGD+
Sbjct: 176 EGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVK 235
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
RK+FDK+ R VSW +M++G G
Sbjct: 236 ARKVFDKIVCRDSVSWNSMLTGYIRHG 262
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++R G ++D ++ L+D+ + G A VF +I C +WN M+ G L
Sbjct: 206 RHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRDSVSWNSMLTGYIRHGLPL 265
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
QAL ++ M+ GF PD V+ + SL + ++HG ++ G ++ + ++L+
Sbjct: 266 QALSIFRRMLQYGFEPDAVAISTVVTG-VPSLKL--AGQIHGWVLRRGVQWNLSIANSLI 322
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
LY G +D +FD M R VVSW ++IS A DL A
Sbjct: 323 VLYSNHGKLDQACWLFDHMPERDVVSWNSIIS--AHRKDLKA 362
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 49 LMIRALTIDGSSLQAL--LLYNLM--ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
L+I + + LQAL LL +L I +G D F +++ C A + G +H L
Sbjct: 45 LLINHKPRNHTKLQALEALLRDLQASIQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRL 104
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASG 159
+ + + + S L+ LY G ++ ++FD+M R RS +W ++ISG A G
Sbjct: 105 IPTSLLRKSVALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELG 161
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ + + L+ L S +GK D A +F + V +WN +I A D L+A
Sbjct: 306 VLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIISAHRKD---LKA 362
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
+ ++ M PD TF ++ AC ++ G+ + + + G M + +++
Sbjct: 363 ITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACMVN 422
Query: 123 LYLKCGDVDGGRKMFDK 139
LY + G ++ ++ +K
Sbjct: 423 LYGRAGLIEEAYEIIEK 439
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D+++ +F + + P VF W +I + G QAL Y M+ G P+ FTF ++
Sbjct: 23 GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 82
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
K C IE GK +H AVK GF D++V++ L+D+Y + GDV +++FD M +S+V
Sbjct: 83 KLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138
Query: 147 SWTTMISGLAASGDLDAA 164
S T M++ A G+LDAA
Sbjct: 139 SLTAMLTCYAKHGELDAA 156
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ D A ++F + WN+MI T +G +AL+L+ M+ +P++ T V
Sbjct: 150 HGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 209
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A+E G+ VH G ++ V + L+D+Y KCG ++ R +FDK+ + V
Sbjct: 210 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 269
Query: 146 VSWTTMISGLAASG 159
V+W +MI G A G
Sbjct: 270 VAWNSMIVGYAMXG 283
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G + A LVF +I V WN MI + G S +AL L+ M G P
Sbjct: 244 LVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPT 303
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF ++ AC S + +G ++ + + + G + +++L + G V+ ++
Sbjct: 304 NITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELV 363
Query: 138 DKMRVRS-VVSWTTMISGLAASGDL 161
M + V W T++ G +
Sbjct: 364 KNMNIEPDPVLWGTLLGACRLHGKI 388
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I+++GL L+ L++L Y KT +L VF + TW+ +I A + +
Sbjct: 51 ILKFGLQTIPLVSHNLINL---YSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAP 107
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L AL + M+ +G RPD +P KAC + GK VH LAVK G+ D+FV S+L
Sbjct: 108 LLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSL 167
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+D+Y KCG++ R +FD+M R+VVSW+ MI G A D
Sbjct: 168 VDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D + L+D+ + G+ A +F ++ +V +W+ MI ++AL
Sbjct: 153 VKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEAL 212
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + + FTF VI+ C +S +E GK +HGL +K F FV S L+ LY
Sbjct: 213 TLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLY 272
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
KCG ++G ++FD++ R++ W +M+
Sbjct: 273 SKCGVIEGAYQVFDEIPTRNLGLWNSML 300
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+ L S G + A VF +I ++ WN M+ A + + L+ M G +P+
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F V+ AC + +EKG+E L G + ++L+DL + G + +
Sbjct: 328 FISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIK 387
Query: 139 KMRVRSVVS-WTTMISGLAASGDLDAA 164
+M +R S W +++G D + A
Sbjct: 388 QMPMRPTESVWGALLTGCRIHKDTEMA 414
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 3/160 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQ--AL 64
GL+ D L V K ++ CS G +A VF+ P+ + N MIRAL+ +D + A+
Sbjct: 42 GLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAI 101
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y +PD FTFPFV+K + + G++VHG AV GF + V + L+ +Y
Sbjct: 102 TVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMY 161
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
CG + RK+FD+MRVR V W +++G G++D A
Sbjct: 162 SSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEA 201
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 27 GKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G+ D A + + C + +W +I G + +A+ ++ M+ PD+ T
Sbjct: 196 GEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLA 255
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V+ AC ++E G+ + G +R + + + ++D+Y K G++ ++F+ + R+
Sbjct: 256 VLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERN 315
Query: 145 VVSWTTMISGLAASG 159
VV+WTT+I+GLA G
Sbjct: 316 VVTWTTIITGLATHG 330
>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 803
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND L R L G + AL +F ++ F WN+MI+ T G +AL LY M
Sbjct: 59 NDPALTRALRGFAD-SGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRM 117
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ +G + D FT+PFVIK+ ++E+GK++H + +K F D++V ++L+ LY+K G
Sbjct: 118 VFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCS 177
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K+F++M R +VSW +MISG A D
Sbjct: 178 WDAEKVFEEMPERDIVSWNSMISGYLALED 207
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 84/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G +L L+D+ +G+ A ++F +I ++ +WN +I A +G + AL
Sbjct: 353 MRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSAL 412
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + + PD T ++ A SL++ +G+++H VK+ + + + ++L+ +Y
Sbjct: 413 ELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMY 472
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CGD++ RK F+ + ++ VVSW ++I A G
Sbjct: 473 AMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHG 507
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+ D +++ +LD+ S YG+ +A +F I ++ WN++I + A L +
Sbjct: 260 TGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQK 319
Query: 70 MI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M NG +PD T ++ AC AI +G+ +HG A++ GF + + + L+D+Y + G
Sbjct: 320 MSEQNGLQPDVITLINLLPAC----AILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWG 375
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +FD++ ++++SW ++I+ +G
Sbjct: 376 QLKSAEVIFDRIAEKNLISWNSIIAAYVQNG 406
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ +D + L+ L G + A VF ++ + +WN MI ++
Sbjct: 152 VIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGFRS 211
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMD 122
L+L+ M+ GF+PD+F+ + AC + GKE+H AV++ D+ V ++++D
Sbjct: 212 LMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILD 271
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G+V ++F + R++V+W +I A + + A
Sbjct: 272 MYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDA 313
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 75/161 (46%), Gaps = 4/161 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
RYG ++ +++ L+ + + G + A F+ + V +WN +I A + G ++
Sbjct: 457 RYG--SNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVC 514
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLY 124
L++ MI + P+K TF ++ AC S +++G E + + G + ++DL
Sbjct: 515 LFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLI 574
Query: 125 LKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
+ G+ ++ +M + + W ++++ D+ A
Sbjct: 575 GRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVA 615
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ L ND ++ KL++ C+ T D+A +F I P + +N M R + + L
Sbjct: 50 IKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPL 109
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ L+ + PD +TFP ++KAC+ + A ++GK++H LA+K G + + +V TL+
Sbjct: 110 KAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLI 169
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y C DVDG +++FD++ VVS+ +I+G A S + A
Sbjct: 170 NMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEA 212
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL+ + + L+++ + D A VF +I P V ++N +I +AL
Sbjct: 154 IKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEAL 213
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + +P+ T V+ +C A++ GK +H K G + + V + L+D+Y
Sbjct: 214 SLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMY 273
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +DG +F+ M VR +W+ MI A G
Sbjct: 274 AKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHG 308
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D A+ VF + W+ MI A + G + ++ M +PD
Sbjct: 269 LIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPD 328
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++ AC + +++G + + ++ G + ++DL + G + K
Sbjct: 329 EITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFI 388
Query: 138 DKMRVRSV-VSWTTMISGLAASGDLDAA 164
D++ ++ + W T++S ++ G+L+ A
Sbjct: 389 DELPIKPTPILWRTLLSSCSSHGNLELA 416
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I+++GL L+ L++L Y KT +L VF + TW+ +I A + +
Sbjct: 51 ILKFGLQTIPLVSHNLINL---YSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAP 107
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L AL + M+ +G RPD +P KAC + GK VH LAVK G+ D+FV S+L
Sbjct: 108 LLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSL 167
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+D+Y KCG++ R +FD+M R+VVSW+ MI G A D
Sbjct: 168 VDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D + L+D+ + G+ A +F ++ +V +W+ MI ++AL
Sbjct: 153 VKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEAL 212
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + + FTF VI+ C +S +E GK +HGL +K F FV S L+ LY
Sbjct: 213 TLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLY 272
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
KCG ++G ++FD++ R++ W +M+
Sbjct: 273 SKCGVIEGAYQVFDEIPTRNLGLWNSML 300
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+ L S G + A VF +I ++ WN M+ A + + L+ M G +P+
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F V+ AC + +EKG+E L G + ++L+DL + G + +
Sbjct: 328 FIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIK 387
Query: 139 KMRVRSVVS-WTTMISGLAASGDLDAA 164
+M +R S W +++G D + A
Sbjct: 388 QMPMRPTESVWGALLTGCRIHKDTEMA 414
>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial; Flags: Precursor
gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 601
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 85/151 (56%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L N + R L+ C G+ +A VF ++ V +N MI + + + L LY+
Sbjct: 46 LLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYD 105
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
MI +PD TF IKAC++ L +EKG+ V AV G+ D+FV S++++LY+KCG
Sbjct: 106 QMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCG 165
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D +F KM R V+ WTTM++G A +G
Sbjct: 166 KMDEAEVLFGKMAKRDVICWTTMVTGFAQAG 196
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K + +G ND + +L+L GK D A ++F ++ V W M+ G SL+
Sbjct: 141 KAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLK 200
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ Y M GF D+ +++A + G+ VHG + G ++ V+++L+D
Sbjct: 201 AVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVD 260
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G ++ ++F +M ++ VSW ++ISG A +G
Sbjct: 261 MYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNG 297
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + ++ L+D+ + G + A VFS++ +W +I +G + +A
Sbjct: 245 RTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFE 304
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
M GF+PD T V+ AC +++ G+ VH +K D + LMD+Y
Sbjct: 305 AVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHV-LDRVTATALMDMYS 363
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG + R++F+ + + +V W TMIS G+
Sbjct: 364 KCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGN 398
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D++ L+D+ S G + +F + + WN MI I G+ + + L+ M
Sbjct: 351 DRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMT 410
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV---KAGFSRDMFVQSTLMDLYLKCG 128
+ PD TF ++ A S +E+G+ + + K S +V L+DL + G
Sbjct: 411 ESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYV--CLIDLLARAG 468
Query: 129 DVDGGRKMFDKMRVRSVVS-WTTMISG 154
V+ M + ++ + + W ++SG
Sbjct: 469 RVEEALDMINSEKLDNALPIWVALLSG 495
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 6/162 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHAL-LVFS---QIRCPHVFTWNLMIRALTIDGS 59
I++ GL N+ L++ K + S TD+A +FS R F +N +IRA G
Sbjct: 52 ILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGH 111
Query: 60 SL-QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
S +AL LY +M+ + P+KFT+PFV+KAC + G+ VHG VK GF D+ VQ+
Sbjct: 112 SKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQN 171
Query: 119 TLMDLYLKC-GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
T++ +Y C G ++ RK+FD+M V+W+ MI G A G
Sbjct: 172 TMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVG 213
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF-YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++G D + ++ + S G + A VF ++ TW+ MI G S +
Sbjct: 158 VVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTE 217
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M PD+ T ++ AC A+E GK + + + + V + L+D
Sbjct: 218 AVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALID 277
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ KCGD+ K+F M +++VSWT++I G+A G
Sbjct: 278 MFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHG 314
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R+ + + L+D+ + G AL +F + + +W +I + + G +A
Sbjct: 260 IERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEA 319
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMD 122
L+ M +G PD F ++ AC S +E+G+E G + K + ++D
Sbjct: 320 TCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVD 379
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDL 161
+Y + G V + M + + V T++S G+
Sbjct: 380 MYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEF 419
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 22 LCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
LCSF + AL VF + C +V WN +I + + AL L+ M C F P+ FT
Sbjct: 195 LCSF----EDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFT 250
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
F ++ AC A +E G+ V G +K G D+FV + ++DLY KC D+D K F +M
Sbjct: 251 FSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMP 310
Query: 142 VRSVVSWTTMISGLAASGD 160
+R+VVSWTT+ISG D
Sbjct: 311 IRNVVSWTTIISGFVQKDD 329
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL D + L + S G + + VF Q+ +W MI + + QA
Sbjct: 474 ILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQA 533
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ RPD+ T + AC A ++EKGKEVHG A++A +++ V L+++
Sbjct: 534 VQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNM 593
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R++FD + + S ++++SG A +G ++ A
Sbjct: 594 YSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDA 634
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQ 62
I + G D + L+++ S G D + VF ++ ++ W +MI A GS+ +
Sbjct: 375 IFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGR 434
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M+ G RPDKF V+ + I SL++ G+ +H +K G D+ V S+L
Sbjct: 435 AVELFQRMLQEGLRPDKFCSSSVL-SIIDSLSL--GRLIHCYILKIGLFTDISVGSSLFT 491
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG ++ +F++M + VSW +MI+G + + A
Sbjct: 492 MYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQA 533
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 22 LCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +Y K++ HAL +F + P+V +WN++I + S + + M +GF P+
Sbjct: 87 LMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPN 146
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FT+ V+ AC A + G+ V+ LA+K GF + +V++ ++DL+ K + ++F
Sbjct: 147 QFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQ 206
Query: 139 KMRVRSVVSWTTMISG 154
+ +VV W +ISG
Sbjct: 207 DVLCENVVCWNAIISG 222
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D + ++DL + D A+ F ++ +V +W +I S+ A
Sbjct: 274 VIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISA 333
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M G + + +T V+ AC + I++ ++H K GF D V S L+++
Sbjct: 334 FHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINM 393
Query: 124 YLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
Y K G VD ++F +M +++ W MIS A SG A
Sbjct: 394 YSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRA 435
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL+ + + L+ + S G D VF QI P + +W MI + G +A
Sbjct: 676 VTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEA 735
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L +Y+LM G +PD TF V+ AC + +E+G ++ +A + G + + ++D
Sbjct: 736 LKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVD 795
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
L + G + + + M + + W +++ GD++
Sbjct: 796 LLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIE 836
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R + + L+ L+++ S G A VF + F+ + ++ +G AL
Sbjct: 576 LRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDAL 635
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LL++ + D FT VI A +++ G ++H K G + ++ V S+L+ +Y
Sbjct: 636 LLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMY 695
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D K+F+++ ++SWT MI A G
Sbjct: 696 SKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHG 730
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Query: 19 LLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
LL+LC D +A+ VF I+ P++ WN M+R + AL +Y M+ G
Sbjct: 1 LLELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGH 60
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
P+ ++FPF++K+C S A E+G+++H +K G D +V ++L+ +Y + G ++ RK
Sbjct: 61 LPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARK 120
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD R VVS T +I+G A+ GD +A
Sbjct: 121 VFDASSHRDVVSCTALITGYASRGDFRSA 149
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G S+ +V L+DL S G + A +F + C V +WN +I T +ALLL
Sbjct: 229 HGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLL 288
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T V+ AC AI+ G+ +H K G + + ++++L+D+Y
Sbjct: 289 FQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMY 348
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ M RS+ SW MI G A G +AA
Sbjct: 349 AKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAA 388
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF +I V +WN MI +G +AL L+ M+ RPD+ T V+ AC S +
Sbjct: 152 VFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGS 211
Query: 95 IEKGKEVHGLAVKA----GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
IE G++VH GFS + + + L+DLY KCGDV+ +F+ + + VVSW T
Sbjct: 212 IELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNT 271
Query: 151 MISG 154
+I G
Sbjct: 272 LIGG 275
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N+ L L+D+ + G + A VF+ + + +WN MI + G + A L+
Sbjct: 333 GVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLF 392
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M N PD TF ++ AC S ++ G+++ + + + ++DL
Sbjct: 393 SRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGH 452
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
G +M M + V W +++ G+L+ A
Sbjct: 453 SGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELA 491
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 14/173 (8%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + N + +LL L S D +A +F +I+ + WN +I+ + S
Sbjct: 40 LKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHD 99
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++L++ ++ + + PD FT P VIK C +++GK++HGLA+K GF D+FVQ +L++
Sbjct: 100 GIVLFHELV-HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVN 158
Query: 123 LYLKCGDVDGGRKMFDKMRVRSV-----------VSWTTMISGLAASGDLDAA 164
+Y KCG++D RK+FD M + V VSW MI+G SGD D+A
Sbjct: 159 MYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSA 211
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D AL +F Q+ + TWNLMI ++G + A+ ++ +M+ G RP T V+
Sbjct: 206 GDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 265
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A + KG+ +H K GF D + ++L+++Y KCG ++ +F ++ + V
Sbjct: 266 SAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVG 325
Query: 147 SWTTMISGLAASGDLDAA 164
WT +I GL G + A
Sbjct: 326 HWTAIIVGLGIHGMANHA 343
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
SLQ L +NL + + + C A +E ++H ++K FV S
Sbjct: 9 SLQQYLPHNLHLS------------LFQTCSAPQEVE---QLHAFSLKTAIFNHPFVSSR 53
Query: 120 LMDLY--LKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
L+ LY K D+ R +FD+++ RS++ W T+I
Sbjct: 54 LLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 88
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+ L +F+Q+ P+ F +N +IR I+ ++ Y+LM G P FTF + KAC
Sbjct: 98 YPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACG 157
Query: 91 ASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
A + + G+++HG + GF D+ V ++++D+Y+KCG ++ GRK+FD+M R V+SWT
Sbjct: 158 AKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWT 217
Query: 150 TMISGLAASGDLDAA 164
+IS SG++++A
Sbjct: 218 ELISAYVKSGNMESA 232
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F + + W +M+ + +A++ + M G D+ T VI
Sbjct: 227 GNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVI 286
Query: 87 KACIASLAIEKGKEVHGLAVKAGFS--RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
AC A + + +A K+ F + V S L+D+Y KCG V ++F M+ R+
Sbjct: 287 SACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERN 346
Query: 145 VVSWTTMISGLAASGDLDAA 164
V S+++MI G A G + A
Sbjct: 347 VYSYSSMILGFAMHGRVHDA 366
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+G + ++ L+D+ S G A VF ++ +V++++ MI + G A+
Sbjct: 309 EFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMK 368
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLY 124
L++ M+ +P++ TF V+ AC + +E+G ++ L K G + ++DL
Sbjct: 369 LFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLL 428
Query: 125 LKCGDVDGGRKMFDKMRVR 143
+ G + ++ M +
Sbjct: 429 GRAGRLQEAHELVKTMPIE 447
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 83/147 (56%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL+ + + G A LV + + P+VF +N M+ AL G +A+ ++LM G
Sbjct: 65 KLVGMYASCGDLQSARLVLERTQNPNVFAFNWMVSALAFHGYHEEAIGYFSLMQELGIVA 124
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+KFTF V+K C+ + KGKEVH + + G + V ++ +D+Y KCG V GRK+F
Sbjct: 125 NKFTFSIVLKQCVGLMDFNKGKEVHCVISRTGLGNVVSVANSXIDMYCKCGHVGYGRKVF 184
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D M R VVSWT+MI G G L+ A
Sbjct: 185 DGMIERDVVSWTSMICGYCNIGTLEEA 211
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 27 GKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G + A ++FS++ P + TWN MI T +++A L+ M G +P++ T
Sbjct: 241 GDCNGAFVLFSRMVREGLVPDLVTWNAMISGFTQSLKAVEAWRLFQDMXVAGIKPNQVTV 300
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
++ AC +I +GKE+HGL + G ++FV + L+D Y KCG V +FD++ +
Sbjct: 301 TGLLPACGLMGSIHRGKELHGLIYRMGXDMNVFVATALIDXYSKCGTVKDAWDVFDRIPI 360
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
++V SW MI G +D++
Sbjct: 361 KNVASWNAMIGCYGKHGLVDSS 382
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 39/159 (24%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R GL N + +D+ G + VF + V +W MI G+ +A
Sbjct: 152 ISRTGLGNVVSVANSXIDMYCKCGHVGYGRKVFDGMIERDVVSWTSMICGYCNIGTLEEA 211
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L+ M G P+ FT+ +I AG++RD
Sbjct: 212 LVLFERMKVEGLEPNDFTWNXMI---------------------AGYARD---------- 240
Query: 124 YLKCGDVDGGRKMFDKM----RVRSVVSWTTMISGLAAS 158
GD +G +F +M V +V+W MISG S
Sbjct: 241 ----GDCNGAFVLFSRMVREGLVPDLVTWNAMISGFTQS 275
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMF-VQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
K C+ A++ GK+VH + + + ++ + S L+ +Y CGD+ R + ++ + +V
Sbjct: 32 KKCLKCKALQPGKQVHAMLLASRIDMNILSMSSKLVGMYASCGDLQSARLVLERTQNPNV 91
Query: 146 VSWTTMISGLAASGDLDAA 164
++ M+S LA G + A
Sbjct: 92 FAFNWMVSALAFHGYHEEA 110
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R G + + L+D S G A VF +I +V +WN MI G +
Sbjct: 323 IYRMGXDMNVFVATALIDXYSKCGTVKDAWDVFDRIPIKNVASWNAMIGCYGKHGLVDSS 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ L+ M G + + T V+ AC +EKG + + ++M ++ T
Sbjct: 383 IQLFERMQAEGMQANHITLISVLSACSHGGLVEKGLTIFRMVEAYELFKEMPIEVT 438
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II G ++ + KL+ +C+ + +A +F QI P++ WN M R S +
Sbjct: 123 QIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE 182
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M RP+ FTFP V+K+C A+ +G++VH +K GF + FV +TL+D
Sbjct: 183 VVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLID 242
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y G V K+F +M R+VV+WT+MI+G S DL +A
Sbjct: 243 MYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSA 284
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKACIASL 93
+F ++ ++F+WN +I +G + L + M+ P+ T V+ AC
Sbjct: 349 LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 408
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
A++ GK VH A +G +++V + LMD+Y KCG ++ +F M + ++SW T+I
Sbjct: 409 ALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIG 468
Query: 154 GLA 156
GLA
Sbjct: 469 GLA 471
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+D+ S G A +F ++ +V W MI + + A
Sbjct: 225 LIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSA 284
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMD 122
L++L P++ V+ + S IE G V + +RD+ +T++
Sbjct: 285 RRLFDLA------PER---DVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLK 335
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y G+V+ +F++M R++ SW +I G A +G
Sbjct: 336 GYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG 372
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + + L+D+ + G ++A+ VF + + +WN +I L + AL L+
Sbjct: 424 GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLF 483
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
M G +PD TF ++ AC +E G
Sbjct: 484 FQMKNAGQKPDGITFIGILCACTHMGLVEDG 514
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 13/175 (7%)
Query: 3 KIIRYG-LSNDQLLVRKLLDLCSFYGK--TDHALLVF------SQIRCPHV----FTWNL 49
+II+ G L N L + +L+ S K + A VF +IR H+ F WN
Sbjct: 36 RIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVFFTRYAVQRIRRNHLDDDPFLWNA 95
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
+I++ + ++AL+L+ +M+ NGF DKF+F ++KAC +E+GK++HGL +K
Sbjct: 96 VIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGLLMKLE 155
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++F+ + L+ +YL+CGD++ R++FD+M ++ VS+ +MI G SG +D A
Sbjct: 156 IGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLA 210
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G A +F ++ V +N ++ +G +AL +++ M + PD+ T
Sbjct: 301 GDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVA 360
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ A +EK +H ++ G S V L+D+Y KCG ++ +FD + + +
Sbjct: 361 LSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGI 420
Query: 146 VSWTTMISGLAASG 159
W MISG+A +G
Sbjct: 421 DHWNAMISGMARNG 434
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ +T++ + KCG ++ +F++M R V+SW+ MI G A GD+ A
Sbjct: 253 ERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVA 306
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ G+S + L+D+ S G ++A+L+F + + WN MI + +G A
Sbjct: 381 LENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAF 440
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQ 117
+ M +PD TF V+ AC + +++G ++VH L K
Sbjct: 441 GMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQH------Y 494
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
++D+ K G V+G K ++M + + + W T++S
Sbjct: 495 GCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSA 532
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
RD+ S ++D Y K GD+ R +FD+M + VV++ T+++G A +G
Sbjct: 285 RDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNG 332
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II GL D ++ L + + ++ +F+++ P F +N++++ + + +
Sbjct: 32 IIHKGLEQDHFIISHFLSIST---SVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDT 88
Query: 64 LLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+ M + + DK+T+P +IK C L +++G+ VHG A++ G S D++V S+L+
Sbjct: 89 FSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLIS 148
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC ++ RK+FD++ R+VVSWT M++G A+ GDL+ A
Sbjct: 149 FYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENA 190
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F + V W+ +I + + +A+ ++ M+ +PD+F ++
Sbjct: 247 GDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLM 306
Query: 87 KACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC + K V + +R V + L+D++ KCG+++ K+F M R +
Sbjct: 307 SACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDL 366
Query: 146 VSWTTMISGLAASG 159
+ ++I GL+ G
Sbjct: 367 IPCCSLIQGLSIHG 380
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 45/163 (27%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSL 61
IR G+S+D + L+ SFYGK L VF +I +V +W M+ G
Sbjct: 132 IRCGVSDDVYVGSSLI---SFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLE 188
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A ++ M P+ R++ + ++
Sbjct: 189 NAKRVFERM------PE---------------------------------RNLPSWNAMI 209
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K GD+ G RK+FD+M R+VVS+T MI G A GD+ +A
Sbjct: 210 SGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASA 252
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A+ +F + + +I+ L+I G ++A+ L+N M+ G PD
Sbjct: 341 LIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPD 400
Query: 79 KFTFPFVIKACIASLAIEKG 98
F ++ AC IE G
Sbjct: 401 TVAFTVILTACSRGGLIEDG 420
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQ 62
II G + L+ KLL+L G + +F + P F + +I++ + + S+
Sbjct: 35 IIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIY 94
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L Y+ M+ + P +TF VIK+C A++ G+ VHG + GF D++VQ+ L+
Sbjct: 95 SLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVA 154
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCGD+ RK+FDK+R RS+V+W +MISG +G
Sbjct: 155 LYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNG 191
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + YGK +A VF +IR + WN MI +G + +A+ L++ M G PD
Sbjct: 152 LVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPD 211
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF V+ AC A G VH V G ++ + ++L+++Y++CG+V R++FD
Sbjct: 212 SATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFD 271
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M+ R+VV+WT MISG +G
Sbjct: 272 SMKERNVVAWTAMISGYGTNG 292
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ GL + +L L+++ G A VF ++ +V W MI +G
Sbjct: 236 EYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGS 295
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
QA+ L++ M NG P+ TF V+ AC + + +G+ +
Sbjct: 296 QAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRL 335
>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Glycine max]
Length = 770
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
++G +D + L+++ S GK + + VFS++ V WN M+ +I+ AL
Sbjct: 444 KFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALS 503
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ M GF P +F+F V+ +C ++ +G++ H VK GF D+FV S+L+++Y
Sbjct: 504 FFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYC 563
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCGDV+G R FD M R+ V+W MI G A +GD
Sbjct: 564 KCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGD 598
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 78/156 (50%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q++ G D + +L C G +F + CP + +WN ++ +
Sbjct: 338 LQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADH 397
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+ L+ M PD+ T ++ +C +E GKEVH + K GF D++V S+L
Sbjct: 398 REAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSL 457
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+++Y KCG ++ + +F K+ VV W +M++G +
Sbjct: 458 INVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFS 493
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL ++ +V LL + + G AL VF I P+ T+ M+ L +A
Sbjct: 164 VIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEA 223
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC------------IASLAIEKGKEVHGLAVKAGFS 111
L+ LM+ G R D + ++ C I++ A +GK++H L+VK GF
Sbjct: 224 AELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNA--QGKQMHTLSVKLGFE 281
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
RD+ + ++L+D+Y K GD+D K+F + SVVSW MI+G
Sbjct: 282 RDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAG 324
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 37/196 (18%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRAL----- 54
++ R L +D L ++L Y K DH A VF I ++F+WN ++ A
Sbjct: 31 RLFRLALFSDTFLSNHFIEL---YSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKARN 87
Query: 55 ---------------TID-----------GSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88
T+ G QAL Y+ ++ +G P TF V A
Sbjct: 88 LQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVFSA 147
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C + L + G+ HG+ +K G +++V + L+ +Y KCG ++F + + V++
Sbjct: 148 CGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTF 207
Query: 149 TTMISGLAASGDLDAA 164
TTM+ GLA + + A
Sbjct: 208 TTMMGGLAQTNQIKEA 223
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G +D + L+++ G + A F + + TWN MI +G
Sbjct: 542 QIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHN 601
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
AL LYN MI +G +PD T+ V+ AC S +++G E+ + + K G + + ++
Sbjct: 602 ALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCII 661
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
D + G + + D M + V W ++S +L A
Sbjct: 662 DCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLA 705
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 35/156 (22%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D L LLD+ + G D A VF + V +WN+MI +S +A
Sbjct: 276 VKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAA 335
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M +G+ PD T+ ++ AC+
Sbjct: 336 EYLQRMQSDGYEPDDVTYINMLTACV---------------------------------- 361
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K GDV GR++FD M S+ SW ++SG + D
Sbjct: 362 -KSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNAD 396
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ CI + A GK VH + D F+ + ++LY KC + +FD + ++
Sbjct: 12 LVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKN 71
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ SW +++ + +L A
Sbjct: 72 IFSWNAILAAYCKARNLQYA 91
>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN IR G++ +AL L++ + NG +P+ FTFPF+ KAC + + +H V
Sbjct: 20 WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
K+ F D++VQ+ ++D+Y+KCG VD +FDKM VR++ SW MI G + G LD
Sbjct: 80 KSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLD 135
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQ 62
I GL D + + S G+ A +VF I+ +WN +I G +
Sbjct: 180 IETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVD 239
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ Y ++C+GF+PD T ++ +C A+ G +HG + G D+ + +TL+
Sbjct: 240 AVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLIS 299
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y +CGD+ +FD M +R+ VSWT MISG + G +D A
Sbjct: 300 MYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDA 341
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D L+ L+ + S G A ++F + +W MI + G AL+L+
Sbjct: 286 GCDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLF 345
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N M G +PD T +I C + A+ G + A +D+ V + L+D+Y KC
Sbjct: 346 NAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKC 405
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G ++ R++F + R+VVSWT MI+ A +G+ A
Sbjct: 406 GSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREA 442
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ +D + ++D+ GK D A +F ++ ++ +WN MI + GS +
Sbjct: 78 VVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRV 137
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G RPD T + +A I++ ++ K VH + ++ G D V +T +
Sbjct: 138 FNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAA 197
Query: 124 YLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASG 159
Y KCG++ + +F ++ RS VSW ++I+ A G
Sbjct: 198 YSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFG 235
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+ L D ++ L+D+ + G + A +F + V +W MI A ++G +AL L
Sbjct: 386 HELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDL 445
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
++L+ +G P+ TF V++AC +EKG+E
Sbjct: 446 FSLLSESGIEPNNITFLAVLQACCHGGYLEKGRE 479
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II G ++ + KL+ +C+ + +A +F QI P++ WN M R S +
Sbjct: 60 QIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE 119
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M RP+ FTFP V+K+C A+ +G++VH +K GF + FV +TL+D
Sbjct: 120 VVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLID 179
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y G V K+F +M R+VV+WT+MI+G S DL +A
Sbjct: 180 MYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSA 221
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKACIASL 93
+F ++ ++F+WN +I +G + L + M+ P+ T V+ AC
Sbjct: 286 LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 345
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
A++ GK VH A +G +++V + LMD+Y KCG ++ +F M + ++SW T+I
Sbjct: 346 ALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIG 405
Query: 154 GLA 156
GLA
Sbjct: 406 GLA 408
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+D+ S G A +F ++ +V W MI + + A
Sbjct: 162 LIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSA 221
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMD 122
L++L P++ V+ + S IE G V + +RD+ +T++
Sbjct: 222 RRLFDLA------PER---DVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLK 272
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y G+V+ +F++M R++ SW +I G A +G
Sbjct: 273 GYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG 309
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + + L+D+ + G ++A+ VF + + +WN +I L + AL L+
Sbjct: 361 GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLF 420
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
M G +PD TF ++ AC +E G
Sbjct: 421 FQMKNAGQKPDGITFIGILCACTHMGLVEDG 451
>gi|357478705|ref|XP_003609638.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510693|gb|AES91835.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 589
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 88/157 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GLSND L++ K DHA +F ++ P+V +W+L++ G
Sbjct: 48 NVVKSGLSNDTFTTNNLINSYLKLLKIDHAHKLFDEMSHPNVVSWSLLMAGYVRQGQPNI 107
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L++ M P++FTF +I AC +E G+ +H L G+ D+ V S+L+D
Sbjct: 108 ALCLFHQMQGTLVMPNEFTFSTLINACSILANLETGRRIHALVEVFGYRSDLVVCSSLID 167
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC VD + +FD M VR+VVSWT+MI+ + +G
Sbjct: 168 MYGKCNRVDEAQMIFDFMWVRNVVSWTSMITTYSQNG 204
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G +D ++ L+D+ + D A ++F + +V +W MI + +G AL L
Sbjct: 153 FGYRSDLVVCSSLIDMYGKCNRVDEAQMIFDFMWVRNVVSWTSMITTYSQNGQGHLALQL 212
Query: 67 Y---NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ N + N +P+ F + AC + + GK HG+ ++ G V S L+D+
Sbjct: 213 FREFNHIRMN--KPNHFMLCSAVTACASLGRLGSGKITHGVVIRLGHDASDVVASALVDM 270
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V K+F ++ SVV +T+MI G A G
Sbjct: 271 YAKCGCVTYSDKVFRRIVNPSVVPYTSMIVGAAKYG 306
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
H VK+G S D F + L++ YLK +D K+FD+M +VVSW+ +++G G
Sbjct: 45 THANVVKSGLSNDTFTTNNLINSYLKLLKIDHAHKLFDEMSHPNVVSWSLLMAGYVRQGQ 104
Query: 161 LDAA 164
+ A
Sbjct: 105 PNIA 108
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 84/155 (54%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++++ G D L+++ + G A VF ++ V +W +I A G
Sbjct: 294 RQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPR 353
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL LY M G P+ TF V+ AC + A+E+GK VH AG+ D+ V + L+
Sbjct: 354 EALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALV 413
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
LY KCG VD RK+FD+M++R+VVSWT MIS A
Sbjct: 414 SLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYA 448
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R L D + L+ + + G + VF R V WN MI A + G +A+
Sbjct: 195 RIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIE 254
Query: 66 LYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M + P+ T+ V+ AC A +E+GKEVH V AGF D +++L+++
Sbjct: 255 LFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNM 314
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R++FD M+ R+VVSWT +IS G
Sbjct: 315 YAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKG 350
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +++ G + + L+ + S G + A VF +R +W+ MI G +
Sbjct: 91 EHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVRHGLAR 150
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A+ LY M + PD FTF V+ AC + A+E GKE+H + D+FV S
Sbjct: 151 EAIKLYKAMAID---PDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSA 207
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+ ++ KCG + R++FD R + V+ W +MI + SG
Sbjct: 208 LVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSG 247
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
GK++H VK G+ +++V + L+ +Y KCG ++ +K+FD MR R +SW+ MI+G
Sbjct: 86 GKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVR 145
Query: 158 SG 159
G
Sbjct: 146 HG 147
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK D A VF +++ +V +W MI A S +A+ LY M G +
Sbjct: 412 LVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQAS 471
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL------KCGDVDG 132
F + V+ AC + +E + G +RD + L D + G +
Sbjct: 472 SFIYGTVLTACSQAGLLESARHYFGC-----LTRDCGAPAKLEDYVCMATVLGRAGRLAE 526
Query: 133 GRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++ M + V+W +++ A D++
Sbjct: 527 AEELLAVMPFEAEFVAWMGLLAACKAHNDVE 557
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++R G D + LL + + D AL VFS I P+VF WN++I+ +
Sbjct: 56 VLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLF 115
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS--- 118
+A+ Y M+ + RP+KFT+P + KAC + A+++G+++HG VK G D+ ++S
Sbjct: 116 KAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGI 174
Query: 119 ---------------------------TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
T++D YLKCG ++ + +F +M V+++ SW M
Sbjct: 175 QMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVM 234
Query: 152 ISGLAASGDLDAA 164
I+GLA G+L A
Sbjct: 235 INGLAKGGNLGDA 247
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ +W+ M+ G +AL ++ M RP +F V+
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC AI++G+ VH + D + + L+D+Y KCG +D G ++F++M+ R +
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIF 361
Query: 147 SWTTMISGLAASGDLDAA 164
+W MI GLA G + A
Sbjct: 362 TWNAMIGGLAIHGRAEDA 379
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R + D +L LLD+ + G+ D VF +++ +FTWN MI L I G + AL
Sbjct: 322 RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALE 381
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLY 124
L++ + +P+ T V+ AC + ++KG + + G ++ ++DL
Sbjct: 382 LFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLL 441
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ G + + M ++ + W ++ G+ D A
Sbjct: 442 GRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ + D LV + + CS + A F+ ++ P+V +N +IR S QA
Sbjct: 1 MIKTNTTQDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQA 60
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ Y M+ N P ++F +IKAC + G+ VHG K GF +FVQ+TL++
Sbjct: 61 LVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEF 120
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y GDV G R++FD M R V +WTTMIS GD+ +A
Sbjct: 121 YSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASA 161
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F+Q+ + +W M+ + + + + L++ +I G PD+ T VI
Sbjct: 187 GNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVI 246
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+ GKEVH V GF D+++ S+L+D+Y KCG +D +F K++ +++
Sbjct: 247 SACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLF 306
Query: 147 SWTTMISGLAASGDLDAA 164
W +I GLA G ++ A
Sbjct: 307 CWNCIIDGLATHGYVEEA 324
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G D + L+D+ + G D ALLVF +++ ++F WN +I L G +A
Sbjct: 265 LVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEA 324
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L ++ M RP+ TF ++ AC + IE+G+ + + + ++D
Sbjct: 325 LRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVD 384
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L K G ++ +M M V + W +++G +L+ A
Sbjct: 385 LLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIA 427
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++R G D + LL + + D AL VFS I P+VF WN++I+ +
Sbjct: 56 VLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLF 115
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS--- 118
+A+ Y M+ + RP+KFT+P + KAC + A+++G+++HG VK G D+ ++S
Sbjct: 116 KAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGI 174
Query: 119 ---------------------------TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
T++D YLKCG ++ + +F +M V+++ SW M
Sbjct: 175 HMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVM 234
Query: 152 ISGLAASGDLDAA 164
I+GLA G+L A
Sbjct: 235 INGLAKGGNLGDA 247
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ +W+ M+ G +AL ++ M RP +F V+
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC AI++G+ VH + D + + L+D+Y KCG +D G ++F++M+ R +
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIF 361
Query: 147 SWTTMISGLAASGDLDAA 164
+W MI GLA G + A
Sbjct: 362 TWNAMIGGLAIHGRAEDA 379
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R + D +L LLD+ + G+ D VF +++ +FTWN MI L I G + AL
Sbjct: 322 RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALE 381
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLY 124
L++ + +P+ T V+ AC + ++KG + + G ++ ++DL
Sbjct: 382 LFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLL 441
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ G + + M ++ + W ++ G+ D A
Sbjct: 442 GRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ + + KL+ + GK A VF ++ +VF W MI G A
Sbjct: 25 ILKSGMDQNPYVANKLMRVYIRCGKVQDARHVFDKLVKKNVFNWTTMIGGYAEHGRPADA 84
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +YN M G RP++ T+ ++KAC + ++ GKE+H GF D+ VQ+ L+++
Sbjct: 85 IEVYNQMRQEGGRPNEVTYLSILKACACPVGLKWGKEIHAHISHGGFRSDVPVQTALVNM 144
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G + R +FD+M R+V++W MI GLA G
Sbjct: 145 YAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQHG 180
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 82/151 (54%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL +D + L+ + + G D A LVF Q+ +VFTWN MI L G +A
Sbjct: 332 KAGLGSDFRVCNALVHMYAKSGSIDDARLVFDQMSVRNVFTWNAMIGGLAQHGCGQEAFS 391
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M G PD T+ ++ A ++ A+ KEVH AV+AG D+ V + L+ +Y
Sbjct: 392 LFLRMRREGVVPDAITYMSILNASASTGALGWVKEVHRQAVQAGLDSDVRVGNALVHMYC 451
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
K G + R MFD M R V++WT MISGLA
Sbjct: 452 KTGSISDARLMFDGMVERDVITWTAMISGLA 482
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D + L+++ + G A LVF ++ +V TWN+MI L G +A L+
Sbjct: 130 GFRSDVPVQTALVNMYAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQHGFGQEAFSLF 189
Query: 68 NLMICNGFRPDKFTFPFVIKA--CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
M GF PD T+ ++ A C ++ A+ KEVH AVKAGF DM V + L+ +Y
Sbjct: 190 LQMQEEGFVPDSTTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDMRVCNALVHVYS 249
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G VD R +F+ M R V+SW+ MI GLA +G
Sbjct: 250 KSGSVDDARLVFEGMLDRDVISWSAMIGGLAQNG 283
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D + L+ + S G D A LVF + V +W+ MI L +G +A
Sbjct: 230 VKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGMLDRDVISWSAMIGGLAQNGCGHEAF 289
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G P+ T+ ++ A ++ A+E K+VH A KAG D V + L+ +Y
Sbjct: 290 SLFLKMQREGVIPNVTTYVSILTASASAGALEWVKQVHNHARKAGLGSDFRVCNALVHMY 349
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G +D R +FD+M VR+V +W MI GLA G
Sbjct: 350 AKSGSIDDARLVFDQMSVRNVFTWNAMIGGLAQHG 384
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V++ C + K+VH +K+G ++ +V + LM +Y++CG V R +FDK+ ++
Sbjct: 5 VLQRCFKHKDLTSVKQVHDCILKSGMDQNPYVANKLMRVYIRCGKVQDARHVFDKLVKKN 64
Query: 145 VVSWTTMISGLAASG 159
V +WTTMI G A G
Sbjct: 65 VFNWTTMIGGYAEHG 79
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 31 HALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFVIKA 88
+A VFS+I P +VF WN +IR G+S+ A LY M +G PD T+PF+IKA
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
+ G+ +H + +++GF ++VQ++L+ LY CGDV K+FDKM + +V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 149 TTMISGLAASGDLDAA 164
++I+G A +G + A
Sbjct: 191 NSVINGFAENGKPEEA 206
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + + LL L + G A VF ++ + WN +I +G +A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G +PD FT ++ AC A+ GK VH +K G +R++ + L+DL
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 266
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG V+ + +FD+M ++ VSWT++I GLA +G
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL+ + LLDL + G+ + A +F ++ + +W +I L ++G +A
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 64 LLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
+ L+ M G P + TF ++ AC +++G E + ++ + + ++ +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE-YFRRMREEYKIEPRIEHFGCM 366
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+DL + G V + M ++ +VV W T++ GD D A
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 31 HALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFVIKA 88
+A VFS+I P +VF WN +IR G+S+ A LY M +G PD T+PF+IKA
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
+ G+ +H + +++GF ++VQ++L+ LY CGDV K+FDKM + +V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 149 TTMISGLAASGDLDAA 164
++I+G A +G + A
Sbjct: 191 NSVINGFAENGKPEEA 206
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + + LL L + G A VF ++ + WN +I +G +A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G +PD FT ++ AC A+ GK VH +K G +R++ + L+DL
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 266
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG V+ + +FD+M ++ VSWT++I GLA +G
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL+ + LLDL + G+ + A +F ++ + +W +I L ++G +A
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 64 LLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
+ L+ M G P + TF ++ AC +++G E + ++ + + ++ +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE-YFRRMREEYKIEPRIEHFGCM 366
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+DL + G V + M ++ +VV W T++ GD D A
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 74/134 (55%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+AL +F+QI P F WN IR + + A+ LY M +PD FTFPFV+KAC
Sbjct: 59 YALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACT 118
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ G VHG ++ GF ++ V++TL+ + KCGD+ +FD VV+W+
Sbjct: 119 KLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSA 178
Query: 151 MISGLAASGDLDAA 164
+I+G A GDL A
Sbjct: 179 LIAGYAQRGDLSVA 192
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ + A +F + + +WN +I + + +AL L++ M G PD+ T +
Sbjct: 217 HGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSL 276
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+ AC +E G++VH ++ + + + L+D+Y KCG++ ++F +R +
Sbjct: 277 LSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKD 336
Query: 145 VVSWTTMISGLAASGDLDAA 164
VVSW ++ISGLA G + +
Sbjct: 337 VVSWNSVISGLAFHGHAEES 356
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
LL L+D+ + G A+ VF IR V +WN +I L G + ++L L+ M
Sbjct: 307 LLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMT 366
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
PD+ TF V+ AC + +++G H + K + ++D+ + G +
Sbjct: 367 KVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKE 426
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
M++ + + W +++ GD++ A
Sbjct: 427 AFNFIASMKIEPNAIVWRSLLGACKVHGDVELA 459
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 84/155 (54%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++++ G D L+++ + G A VF ++ V +W +I A G
Sbjct: 84 RQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPR 143
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL LY M G P+ TF V+ AC + A+E+GK VH AG+ D+ V + L+
Sbjct: 144 EALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALV 203
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
LY KCG VD RK+FD+M++R+VVSWT MIS A
Sbjct: 204 SLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYA 238
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG--FRPDKFTFPFVIKACIAS 92
VF R V WN MI A + G +A+ L+ M + P+ T+ V+ AC A
Sbjct: 14 VFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAV 73
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
A+E+GKEVH V AGF D +++L+++Y KCG + R++FD M+ R+VVSWT +I
Sbjct: 74 EALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGII 133
Query: 153 SGLAASG 159
S G
Sbjct: 134 SAYVRKG 140
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK D A VF +++ +V +W MI + S +A+ LY M P+
Sbjct: 202 LVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAIQLYKAM---DVAPN 258
Query: 79 KFTFPFVIKACIASLAIEKGKEVHG--LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
T V+ AC + E+G+ VH + G + D +Q+ L+++Y KCGD D RK+
Sbjct: 259 AVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKI 318
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
FD M VR +SW+T+I+ G
Sbjct: 319 FDAMAVRDTMSWSTLIAAYTQHG 341
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL+ D++L LL++ + G D A +F + +W+ +I A T G +A+ +
Sbjct: 291 GLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMC 350
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL-- 125
M G + F + V+ AC + +E + G +RD + L D
Sbjct: 351 RSMELEGVQASSFIYGTVLTACSQAGLLESARHYFGC-----LTRDCGAPAKLEDYVCMA 405
Query: 126 ----KCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ G + ++ M + V+W +++ A D++
Sbjct: 406 TVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLAACKAHNDVE 447
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 91/162 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II +GL+ L + KL+ +A +F QI P+ F +N +I+ + ++
Sbjct: 58 QIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIK 117
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+LLLY M+C+G P++FT PFV+KAC A G VH + K G VQ+ +++
Sbjct: 118 SLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILN 177
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+ CG + R++FD + R++VSW +MI+G + G + A
Sbjct: 178 IYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEA 219
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G+ + + +L++ G A VF I + +WN MI + G S +A+L
Sbjct: 162 KLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVL 221
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M G PD FT ++ + G+ VH V G D V + LMD+Y
Sbjct: 222 MFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYA 281
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG++ + +FD+M + VVSWT MI+ A G +D A
Sbjct: 282 KCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCA 320
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G D AL F+Q+ +V +WN +I +G +A+ L+ M +G + T +
Sbjct: 314 HGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAI 373
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ +C + GK+ H + + + ++D+Y KCG + +F M ++
Sbjct: 374 LSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNA 433
Query: 146 VSWTTMISGLAASG 159
VSW +I LA G
Sbjct: 434 VSWNVIIGALALHG 447
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L ++D+ + G A+ VF + + +WN++I AL + G +A+ ++ M +G
Sbjct: 404 LCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASG 463
Query: 75 FRPDKFTFPFVIKACIASLAIEKGK---EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
PD+ TF ++ AC S ++ G+ E+ L G S D+ + ++DL + G +
Sbjct: 464 VCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTF--GISPDVEHYACMVDLLGRRGLLG 521
Query: 132 GGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
+ KM V+ VV W+ ++ G+L
Sbjct: 522 EAISLIKKMPVKPDVVVWSALLGACRTYGNL 552
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 31/193 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFT---------------- 46
+++ GL+ D L+ +L++L S G HAL F + P+V++
Sbjct: 35 RVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGDLAA 94
Query: 47 ---------------WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
WN +I A+ GS +AL +Y M+ G P FT V+ AC A
Sbjct: 95 ARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGA 154
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A++ G+ HGLAVK G FV++ L+ +Y KCG V ++FD M + VS+T M
Sbjct: 155 VAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAM 214
Query: 152 ISGLAASGDLDAA 164
+ GLA G +D A
Sbjct: 215 MGGLAQGGAVDDA 227
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R L ND + L+D+ S G+ AL++F+ + V WN MI L I S +A
Sbjct: 445 VRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAF 504
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M NG P + ++ +I C +I +G+++H +K G+ ++++V +L+D+Y
Sbjct: 505 DFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMY 564
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G++D R F+ M V+++V+W MI G A +G
Sbjct: 565 AKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNG 599
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ +L C A +F +I P V TWN ++ + + + L+
Sbjct: 347 GFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLF 406
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD+ T ++ +C E GK+VH +V+ DMFV S L+D+Y KC
Sbjct: 407 RRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKC 466
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G V +F+ M R VV W +MISGLA
Sbjct: 467 GQVGIALIIFNMMTERDVVCWNSMISGLA 495
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL Q + LL + + G A+ +F + P+ ++ M+ L G+ AL
Sbjct: 169 VKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDAL 228
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLA--------IEKGKEVHGLAVKAGFSRDMFV 116
L+ M G R D V+ AC + A I+ + +H L V+ GF D V
Sbjct: 229 RLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHV 288
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+DLY K +D K+F+ + S+VSW +I+G G
Sbjct: 289 GNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLG 331
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 35/151 (23%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G +DQ + L+DL + K D A+ VF + + +WN++I G +A
Sbjct: 277 VVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERA 336
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M +GF P++ T+ ++ +CI
Sbjct: 337 MEVLEFMQESGFEPNEVTYSNMLASCI--------------------------------- 363
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K DV R MFDK+ SV +W T++SG
Sbjct: 364 --KARDVPSARAMFDKIPKPSVTTWNTLLSG 392
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + G D A L F+ + ++ WN MI +G +
Sbjct: 544 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEK 603
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK 97
A+ L+ M+ +PD TF V+ C S +++
Sbjct: 604 AVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDE 638
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-- 68
+ L+ KL+ C+ HA L+F+Q+ P+VF+WN +I+A G+ AL +N
Sbjct: 43 HPNLIAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQ 102
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
L + + P+++ + +IKAC AI G +VH + +K+G ++ + ++L+D+Y K
Sbjct: 103 LSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFR 162
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++FD+M +R VVSW TM+SG GDL++A
Sbjct: 163 EPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESA 198
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G + A VF Q+ V +WN MI +G A+ +++ M G PD T V
Sbjct: 193 GDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSV 252
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A++ G+ + G ++++ + L+D+Y KCG ++ R++FD MR R V
Sbjct: 253 LSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDV 312
Query: 146 VSWTTMISGLAASGDLDAA 164
+SW+TMI G GD D A
Sbjct: 313 ISWSTMICGSGTHGDADEA 331
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G + A +F +R V +W+ MI G + +A Y+ M+ G
Sbjct: 283 LGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECG 342
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGG 133
+P++ TF ++ AC + ++KG E+ ++ + ++DL + G +D
Sbjct: 343 VKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEA 402
Query: 134 RKMFDKMRVR-SVVSWTTMISG 154
+ + M + +V+ W ++ G
Sbjct: 403 EDLINSMPIEPNVIVWGALLGG 424
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 11 NDQLLVRKLLDLCS---FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
N+ ++ KL++ C+ DHA +F +I P + +N M R L+A+LL
Sbjct: 64 NNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLC 123
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ ++C+G PD +TF ++KAC A+E+GK++H LAVK G +M+V TL+++Y C
Sbjct: 124 SQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTAC 183
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DVD R++FDK+ VV++ +I+ A + + A
Sbjct: 184 NDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEA 220
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ ++ + L+++ + D A VF +I P V +N +I + + +AL
Sbjct: 162 VKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEAL 221
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + +G +P T + +C A++ G+ +H K GF + + V + L+D+Y
Sbjct: 222 ALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMY 281
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D +F M R +W+ MI A G
Sbjct: 282 AKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHG 316
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D A+ VF + W+ MI A G QA+ + M +PD
Sbjct: 277 LIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPD 336
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++ AC + +E+G E H + + G + ++DL + G ++ K
Sbjct: 337 EITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFI 396
Query: 138 DKMRVRSV-VSWTTMISGLAASGDLDAA 164
D++ ++ + W T++S ++ G+++ A
Sbjct: 397 DELPIKPTPILWRTLLSSCSSHGNVEMA 424
>gi|91806812|gb|ABE66133.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 230
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLC----SFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTI 56
++R L +D + +LL LC +F T+ +A +FSQI+ P++F +NL+IR +
Sbjct: 35 LLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFST 94
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+A Y M+ + PD TFPF+IKA + G++ H V+ GF D++V
Sbjct: 95 GAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYV 154
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++L+ +Y CG + ++F +M R VVSWT+M++G G ++ A
Sbjct: 155 ENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENA 202
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I L D L KL+ S G+T A +F + +V +N+MIR+ + ++A
Sbjct: 62 VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ +M+ F PD +TFP V+KAC + G +VH VK G ++F+ + L+ +
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAM 181
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + RK+ D+M R VVSW +M++G A SG D A
Sbjct: 182 YGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDA 222
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ ++ +WN+MI + +A+ L+ M G +PD T ++ AC A
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ G+ +H K ++ +++ L+D+Y KCG ++ R +FDKMR+R VVSWT+M+S
Sbjct: 322 LFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSA 381
Query: 155 LAASG 159
SG
Sbjct: 382 YGRSG 386
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Query: 1 MQKIIRYG-LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+ K I G L + LL LLD+ + G + A VF ++R V +W M+ A G
Sbjct: 328 LHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQS 118
A+ L+ M+ +G PD F V+ AC + +++G+ + + G + +
Sbjct: 388 GYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA 447
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
++DL+ + G+V+ +M + + W ++S +D
Sbjct: 448 CMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMD 492
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I L D L KL+ S G+T A +F + +V +N+MIR+ + ++A
Sbjct: 62 VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ +M+ F PD +TFP V+KAC + G +VH VK G ++F+ + L+ +
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAM 181
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + RK+ D+M R VVSW +M++G A SG D A
Sbjct: 182 YGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDA 222
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ ++ +WN+MI + +A+ L+ M G +PD T ++ AC A
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ G+ +H K ++ +++ L+D+Y KCG ++ R +FDKMR+R VVSWT+M+S
Sbjct: 322 LFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSA 381
Query: 155 LAASG 159
SG
Sbjct: 382 YGRSG 386
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Query: 1 MQKIIRYG-LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+ K I G L + LL LLD+ + G + A VF ++R V +W M+ A G
Sbjct: 328 LHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQS 118
A+ L+ M+ +G PD F V+ AC + +++G+ + + G + +
Sbjct: 388 GYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA 447
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
++DL+ + G+V+ +M + + W ++S +D
Sbjct: 448 CMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMD 492
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
DQ+ + ++ G+ D A VFS+ + + W M+ +G ALLL+N M+
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEML 314
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
PD +T V+ +C ++ G+ VHG ++ AG + ++ V S L+D+Y KCG +D
Sbjct: 315 LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
R +F+ M R+VVSW MI G A +G D DA
Sbjct: 375 DARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDA 407
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 31/179 (17%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS------------ 59
D L +LL L + +GK A +F ++ +F+WN ++ A GS
Sbjct: 57 DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116
Query: 60 -------------------SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
++L L+ M GF P ++T ++ A + GK+
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+HG + F ++F+ + L D+Y KCG+++ R +FD + +++VSW MISG A +G
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I GL+N+ L+ L+D+ S G D A VF+ + +V +WN MI +G
Sbjct: 347 KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKD 406
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
AL L+ M+ F+PD TF ++ AC+ IE+G+E + + G + + + ++
Sbjct: 407 ALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMV 466
Query: 122 DLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDL 161
+L + G ++ + M + W+T++S + GD+
Sbjct: 467 NLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R L N + L D+ + G+ + A +F + ++ +WNLMI +G +
Sbjct: 182 IVRNFLGN-VFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKC 240
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L + M +G PD+ T ST++
Sbjct: 241 IGLLHQMRLSGHMPDQVTM-----------------------------------STIIAA 265
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG VD R++F + + + +V WT M+ G A +G + A
Sbjct: 266 YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDA 306
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCG 128
++C+ + ++ C+ + I + K + F D F+ + L+ LY K G
Sbjct: 13 LLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFG 72
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+ + +FDKM R + SW ++S A SG +
Sbjct: 73 KLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSI 105
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
DQ+ + ++ G+ D A VFS+ + + W M+ +G ALLL+N M+
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEML 314
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
PD +T V+ +C ++ G+ VHG ++ AG + ++ V S L+D+Y KCG +D
Sbjct: 315 LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
R +F+ M R+VVSW MI G A +G D DA
Sbjct: 375 DARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDA 407
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 31/179 (17%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS------------ 59
D L +LL L + +GK A +F ++ F+WN ++ A GS
Sbjct: 57 DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116
Query: 60 -------------------SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
++L L+ M GF P ++T ++ A L + GK+
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+HG + F ++F+ + L D+Y KCG+++ R +FD + +++VSW MISG A +G
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I GL+N+ L+ L+D+ S G D A VF+ + +V +WN MI +G
Sbjct: 347 KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKD 406
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
AL L+ M+ F+PD TF ++ AC+ IE+G+E ++ + G + + + ++
Sbjct: 407 ALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMV 466
Query: 122 DLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDL 161
+L + G ++ + M + W+T++S + GD+
Sbjct: 467 NLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R L N + L D+ + G+ + A +F + ++ +WNLMI +G +
Sbjct: 182 IVRNFLGN-VFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKC 240
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L + M +G PD+ T ST++
Sbjct: 241 IGLLHQMRLSGHMPDQVTM-----------------------------------STIIAA 265
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG VD R++F + + + +V WT M+ G A +G + A
Sbjct: 266 YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDA 306
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCG 128
++C+ + ++ C+ + I + K + F D F+ + L+ LY K G
Sbjct: 13 LLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFG 72
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+ + +FDKM R SW ++S A SG +
Sbjct: 73 KLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSI 105
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 79/141 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL + +G A VF ++ VF+WN+++ G +AL LY+ M+ RP+
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+TFP V+K C I +GKE+H ++ GF D+ V + L+ +Y+KCGD+ R +FD
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 257
Query: 139 KMRVRSVVSWTTMISGLAASG 159
KM R +SW MISG +G
Sbjct: 258 KMPKRDRISWNAMISGYFENG 278
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ D + L+ + S G+ + A VFS++ V +W MI +L +A
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y +M G PD+ T V+ AC ++ G +H +A+K G + V ++L+D+
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC VD ++F + ++VVSWT++I GL
Sbjct: 445 YSKCKCVDNALEVFRNISGKNVVSWTSLILGL 476
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL + ++ L+D+ S D+AL VF I +V +W +I L I+ S +AL
Sbjct: 427 IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL 486
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L + M +P+ T V+ AC A+ +GKE+H A++ G D F+ + ++D+Y
Sbjct: 487 LFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMY 545
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++CG F+ + + V +W +++G A G
Sbjct: 546 VRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQG 579
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+G +D + L+ + G +A ++F ++ +WN MI +G L+
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+++M PD T V AC G+ VHG VK+ F D+ + ++L+ +
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQM 343
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
Y G ++ +F +M + VVSWT MI+ L +
Sbjct: 344 YSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+ D L +LD+ G+ AL F+ + V WN+++ G + A+
Sbjct: 527 LRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAV 585
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDL 123
L++ M+ PD+ TF ++ AC S + +G E + K + ++ + ++D+
Sbjct: 586 ELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDI 645
Query: 124 YLKCGDVDGGRKMFDKMRVR 143
+ G +D M +R
Sbjct: 646 LGRAGQLDDAYDFIQDMPIR 665
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID--GSS 60
K++ + D++ LL CS G L F+ ++ + T NL A +D G +
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD---MFVQ 117
Q Y+ + RPD + ++ AC I + E+ +A K F +D +
Sbjct: 650 GQLDDAYDFIQDMPIRPDAAIWGALLNAC----RIHRNVELGEIAAKRVFEKDNKSVGYY 705
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSV-----VSWTTMISGLAA--SGD 160
L +LY CG+ D K+ MR R + SW + + A SGD
Sbjct: 706 ILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGD 755
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 79/141 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL + +G A VF ++ VF+WN+++ G +AL LY+ M+ RP+
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+TFP V+K C I +GKE+H ++ GF D+ V + L+ +Y+KCGD+ R +FD
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 257
Query: 139 KMRVRSVVSWTTMISGLAASG 159
KM R +SW MISG +G
Sbjct: 258 KMPKRDRISWNAMISGYFENG 278
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ D + L+ + S G+ + A VFS++ V +W MI +L +A
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y +M G PD+ T V+ AC ++ G +H +A+K G + V ++L+D+
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC VD ++F + ++VVSWT++I GL
Sbjct: 445 YSKCKCVDNALEVFRNISGKNVVSWTSLILGL 476
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL + ++ L+D+ S D+AL VF I +V +W +I L I+ S +AL
Sbjct: 427 IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL 486
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L + M +P+ T V+ AC A+ +GKE+H A++ G D F+ + ++D+Y
Sbjct: 487 LFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMY 545
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++CG F+ + + V +W +++G A G
Sbjct: 546 VRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQG 579
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+G +D + L+ + G +A ++F ++ +WN MI +G L+
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+++M PD T V AC G+ VHG VK+ F D+ + ++L+ +
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQM 343
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
Y G ++ +F +M + VVSWT MI+ L +
Sbjct: 344 YSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+ D L +LD+ G+ AL F+ + V WN+++ G + A+
Sbjct: 527 LRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAV 585
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDL 123
L++ M+ PD+ TF ++ AC S + +G E + K + ++ + ++D+
Sbjct: 586 ELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDI 645
Query: 124 YLKCGDVDGGRKMFDKMRVR 143
+ G +D M +R
Sbjct: 646 LGRAGQLDDAYDFIQDMPIR 665
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID--GSS 60
K++ + D++ LL CS G L F+ ++ + T NL A +D G +
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD---MFVQ 117
Q Y+ + RPD + ++ AC I + E+ +A K F +D +
Sbjct: 650 GQLDDAYDFIQDMPIRPDAAIWGALLNAC----RIHRNVELGEIAAKRVFEKDNKSVGYY 705
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSV-----VSWTTMISGLAA--SGD 160
L +LY CG+ D K+ MR R + SW + + A SGD
Sbjct: 706 ILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGD 755
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 95/157 (60%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + D +++ + + + + A+ +F ++ V +WN +I DG +A
Sbjct: 324 VIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 383
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +GF+PD T VI +C L +E+GKE+H V++GF+ D FV S L+D+
Sbjct: 384 LELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDM 443
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ +++F++++ ++VVSW +MI+G + GD
Sbjct: 444 YGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 480
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G + D + L+D+ G + A VF QI+ +V +WN MI ++ G S
Sbjct: 424 ELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKS 483
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G RP T ++ AC S+ ++ GK +HG ++ D+FV S+L+D
Sbjct: 484 CIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLID 543
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG++ +F M +VVSW MISG G
Sbjct: 544 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 580
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR + D + L+DL G A VF + +V +WN+MI GS L+A
Sbjct: 526 IIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEA 585
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+++ M G +PD TF V+ AC +EKGKE+H +++ + V L+D+
Sbjct: 586 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDM 645
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG VD +F+++ R VSWT+MI+ + G
Sbjct: 646 YAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHG 681
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFT-WNLMIRALTID 57
QKI+ GL N+ L + L++L C + A LVF I P T WN ++ A T +
Sbjct: 219 QKIVSLGLQNNITLCKSLINLYFSCHLF---QSAKLVFQTIENPLDITLWNGLMAACTKN 275
Query: 58 GSSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
++ L +++ ++ + +PD FT+P V+KAC + GK VH +K+GF+ D+ V
Sbjct: 276 FIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVV 335
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+ + +Y KC + K+FD+M R V SW +IS G + A
Sbjct: 336 MSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 383
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II L +++++ LLD+ + G D AL +F+Q+ +W MI A G + +A
Sbjct: 627 IIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEA 686
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M + +PDK TF ++ AC + +++G + + + GF + S L+D
Sbjct: 687 LKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLID 746
Query: 123 LYLKCG 128
L + G
Sbjct: 747 LLGRVG 752
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ +GL + L K++ + + G D A++VF +I P +N +IRA T G
Sbjct: 102 QIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXX 161
Query: 63 A---LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L Y M G D FT PFV+K+C + G+ VHG ++ G D +V ++
Sbjct: 162 XXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGAS 221
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y+KCG + RK+FDKM VR + SW +I+G G++ A
Sbjct: 222 LIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVA 266
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG--FRPDKFTFPFVIKACIAS 92
+F ++ ++ +W MI T +G + QAL L++ M+ +G +P+ T V+ AC S
Sbjct: 269 LFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQS 328
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD--KMRVRSVVSWTT 150
A+E+G+ +H A G + VQ+ L +Y KC + R FD +++++W T
Sbjct: 329 AALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNT 388
Query: 151 MISGLAASG 159
MI+ A+ G
Sbjct: 389 MITAYASHG 397
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEV 101
++ WN MI A G ++A+ ++ M+ G +PD TF ++ C S I+ G
Sbjct: 382 NLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHF 441
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGD 160
+ + + + ++DL + G + +++ +M +++ S W +++ + +
Sbjct: 442 NDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRN 501
Query: 161 LDAA 164
L+ A
Sbjct: 502 LEIA 505
>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 18 KLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
KLL L + G D A +F Q+ R F WN +I G +A+ LY M+ G
Sbjct: 130 KLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEGV 189
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
D FTFP V+K C +++ G+EVH A++AGF+ D F+ + L+D+Y KCGD+ RK
Sbjct: 190 EADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARK 249
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FDKM R VSW +M++ G
Sbjct: 250 VFDKMPHRDPVSWNSMLTAYVHHG 273
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + D ++ L+D+ S G A VF ++ +WN M+ A G +QA+
Sbjct: 220 IRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAM 279
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G PD + V+ ++SL + G ++HG + G ++ + ++L+ +Y
Sbjct: 280 NIFRQMLLEGCEPDSVSISTVLTG-VSSLGL--GVQIHGWVISQGHEWNLSIANSLIMMY 336
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
G ++ R +F+ M R VVSW ++IS
Sbjct: 337 SNHGRLEKARWVFNLMPERDVVSWNSIISA 366
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G + D + +++ C AI G VH L + +++ + S L+ LY CG +D
Sbjct: 85 GIKIDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDA 144
Query: 134 RKMFDKMRVR--SVVSWTTMISGLAASGDLDAA 164
+FD+M R S W ++ISG A G D A
Sbjct: 145 HDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEA 177
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + + L+ + S +G+ + A VF+ + V +WN +I A +A
Sbjct: 317 VISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHC---KRREA 373
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L + M G +PDK TF ++ AC
Sbjct: 374 LAFFEQMEGAGVQPDKITFVSILSAC 399
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ L ND + KL+ S + + A+ VF+QI+ P+V +N +IRA + SL+
Sbjct: 45 QIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLK 104
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A + M NG D FT+PF++KAC + + +H K GF D+FV ++L+D
Sbjct: 105 AFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLID 164
Query: 123 LYLKCG--DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ K+F +M + +VSW +MI GL +GDL A
Sbjct: 165 SYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRA 208
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A ++F ++ ++ TW ++I G + +A LYN M G +PD T ++
Sbjct: 265 GDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISIL 324
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S + GK+VH K + V + L+D+Y KCG VD +F++M +R +V
Sbjct: 325 AACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLV 384
Query: 147 SWTTMISGLAASGDLDAA 164
SW M+ GLA G + A
Sbjct: 385 SWNCMLQGLAMHGHGEKA 402
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G+ D AL +F+++ + +WN M++ L + G +A+ L++ M GF+PD
Sbjct: 358 LVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPD 417
Query: 79 KFTFPFVIKACIASLAIEKG 98
K T ++ AC + +++G
Sbjct: 418 KVTLIAILCACTHAGFVDQG 437
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 4 IIRYGLSNDQLLVRKLLD---LCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ +YG D + L+D C G ++A+ +F ++ + +WN MI L G
Sbjct: 147 VEKYGFFGDLFVPNSLIDSYSKCGLLG-VNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDL 205
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A L++ M D ++ ++ + + + + + + R++ ST+
Sbjct: 206 GRARKLFDEMA----ERDAVSWNTILDGYVKAGEMSQAFNL----FEKMPERNVVSWSTM 257
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y K GD++ R +FDKM +++V+WT +ISG A G
Sbjct: 258 VSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKG 296
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 95/157 (60%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + D +++ + + + + A+ +F ++ V +WN +I DG +A
Sbjct: 132 VIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +GF+PD T VI +C L +E+GKE+H V++GF+ D FV S L+D+
Sbjct: 192 LELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDM 251
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ +++F++++ ++VVSW +MI+G + GD
Sbjct: 252 YGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 288
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G + D + L+D+ G + A VF QI+ +V +WN MI ++ G S
Sbjct: 232 ELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKS 291
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G RP T ++ AC S+ ++ GK +HG ++ D+FV S+L+D
Sbjct: 292 CIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLID 351
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG++ +F M +VVSW MISG G
Sbjct: 352 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 388
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR + D + L+DL G A VF + +V +WN+MI GS L+A
Sbjct: 334 IIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEA 393
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+++ M G +PD TF V+ AC +EKGKE+H +++ + V L+D+
Sbjct: 394 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDM 453
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG VD +F+++ R VSWT+MI+ + G
Sbjct: 454 YAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHG 489
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFT-WNLMIRALTID 57
QKI+ GL N+ L + L++L C + A LVF I P T WN ++ A T +
Sbjct: 27 QKIVSLGLQNNITLCKSLINLYFSCHLF---QSAKLVFQTIENPLDITLWNGLMAACTKN 83
Query: 58 GSSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
++ L +++ ++ + +PD FT+P V+KAC + GK VH +K+GF+ D+ V
Sbjct: 84 FIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVV 143
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+ + +Y KC + K+FD+M R V SW +IS G + A
Sbjct: 144 MSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 191
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II L +++++ LLD+ + G D AL +F+Q+ +W MI A G + +A
Sbjct: 435 IIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEA 494
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M + +PDK TF ++ AC + +++G + + + GF + S L+D
Sbjct: 495 LKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLID 554
Query: 123 LYLKCG 128
L + G
Sbjct: 555 LLGRVG 560
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 91/151 (60%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+S+D ++ LLDL G + AL++F+ +V WNL++ A ++
Sbjct: 270 LFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKS 329
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G RP++FT+P +++ C + I+ G+++H L+VK GF DM+V L+D+
Sbjct: 330 FELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDM 389
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G ++ R++ + ++ + VVSWT+MI+G
Sbjct: 390 YSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I GL D+++ L+DL S G A VF ++ +W M+ +G +
Sbjct: 67 KAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEE 126
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M G P + V+ +C + +G+ VH K GF + FV + L+
Sbjct: 127 ALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALIT 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
LYL+CG ++F M R V++ T+ISG A
Sbjct: 187 LYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHA 220
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S D + L++L + G+ A F +I TWN ++ G +AL ++
Sbjct: 476 GYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVF 535
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +G + + FTF + A I++GK++H +K G S + V + L+ LY KC
Sbjct: 536 MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC 595
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + + F +M R+ VSW T+I+ + G
Sbjct: 596 GSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D + L+D+ S YG + A V ++ V +W MI AL
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDAL 431
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD I C A+ +G ++H +G+S D+ + + L++LY
Sbjct: 432 AAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLY 491
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CG + F+++ + ++W ++SG A SG
Sbjct: 492 ARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSG 526
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH T+N +I AL ++ M +G PD T ++ AC + ++KG
Sbjct: 205 PHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGT 264
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++H KAG S D ++ +L+DLY+KCGDV+ +F+ +VV W ++
Sbjct: 265 QLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQIN 324
Query: 160 DL 161
DL
Sbjct: 325 DL 326
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H A+ G +D V + L+DLY K G V R++F+++ R VSW M+SG A +G
Sbjct: 63 EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
sativa Japonica Group]
Length = 391
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K+I+ GL +D + ++D+ G D A + +I V +WN ++ +++ S +
Sbjct: 5 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 64
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M+ G +PD FTF V+ C IE GK++HG +K D ++ STL+D
Sbjct: 65 AQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVD 124
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCGD+ +F+K+ R VSW MI G A G
Sbjct: 125 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 161
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
VH +K+G D FV ST++D+Y KCG +D +K+ D++ + VVSW ++SG + + +
Sbjct: 2 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 61
Query: 161 LDAA 164
+ A
Sbjct: 62 SEEA 65
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + +D+ + L+D+ + G +LLVF ++ +WN MI + G ++
Sbjct: 106 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 165
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL ++ M P+ TF V++AC
Sbjct: 166 ALRMFERMQKENVVPNHATFVAVLRAC 192
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 88/153 (57%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D+ + L+D+ S G A +F++I+ + WN MI + +G S++AL L++ M
Sbjct: 439 DEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMF 498
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
N +K TF I+AC ++KGK +H + G D+++ + L+D+Y KCGD+
Sbjct: 499 KNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQ 558
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K+FD + +SVVSW+TMI+ G ++AA
Sbjct: 559 TAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAA 591
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D S K + I ++ +WN +I +G + +A+ + M+ G PD
Sbjct: 346 LIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPD 405
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F+ I A +S +I+ G+++HG +K GF D FVQ++LMD+Y KCG +F+
Sbjct: 406 SFSLASSISASASSGSIQFGQQIHGHVMKRGFF-DEFVQNSLMDMYSKCGFASSAYTIFN 464
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K++ +S+V+W MI G + +G
Sbjct: 465 KIKHKSIVAWNCMICGFSQNG 485
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+I++ G D+++ L+ + YG+ A VF ++ + W+ +I +G
Sbjct: 127 RILKSGFCEDRVIGTSLVGM---YGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGV 183
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ L ++ MIC G RPD V +AC + K VHG ++ G D + ++
Sbjct: 184 YREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNS 243
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
L+ +Y +CG + +++F+ + RS WT+MIS
Sbjct: 244 LIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISA 278
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L N+ L KLL+ S G + LVF P F ++++I+ + + L L+N
Sbjct: 29 LHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFN 88
Query: 69 LMICNGFRPDK---FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
I G + + F +P VI+A + G+++HG +K+GF D + ++L+ +Y
Sbjct: 89 HHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYG 148
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ + +K+FD+M VR +V W+++IS +G
Sbjct: 149 ELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENG 182
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
KII G ND + L+D+ + G A VF I V +W+ MI A I G
Sbjct: 530 HKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQIN 589
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTL 120
A L++ M+ + +P++ TF ++ AC + ++++GK + + G ++ +++
Sbjct: 590 AATSLFHKMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASI 649
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+DL + GD++G ++ +R S W +++G G +D
Sbjct: 650 VDLLSRAGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMD 692
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ D L L+ + S G A +F I W MI A + +A
Sbjct: 229 VMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEA 288
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMD 122
L ++ M + P+ T V+ +C +++GK VH ++ + + L+D
Sbjct: 289 LDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALID 348
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y C + K+ + ++VSW T+IS A G D A
Sbjct: 349 FYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEA 390
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I G ++++ +R+L+ + G ++A VF+QI P +F WN M+R + +
Sbjct: 36 LIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPS 95
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ +LLY M G +PDKFTF F++K C + G VHG +K GF + FV++TL+
Sbjct: 96 KVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLI 155
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ CGD+ R +F + RSVVSW+ + +G A G+L A
Sbjct: 156 YFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVA 198
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ ++A +F + V TWN MI + G QAL ++ M G PD+ T ++
Sbjct: 224 GEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLL 283
Query: 87 KACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC ++ G+++H ++ + + + L+D+Y KCG ++ ++F KMR + V
Sbjct: 284 SACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDV 343
Query: 146 VSWTTMISGLAASGDLDAA 164
+W ++I GLA G + +
Sbjct: 344 TTWNSVIGGLAFHGHAEES 362
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMIC 72
LL L+D+ + G + AL VF ++R V TWN +I L G + +++ L+ +
Sbjct: 313 LLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQAL 372
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+P++ TF VI AC + +E+G+ L + +M ++DL + G +
Sbjct: 373 KNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLS 432
Query: 132 GGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
++ KM + + + W T++ G+++
Sbjct: 433 EAFELIAKMEIEPNAIIWRTLLGACRVHGNVE 464
>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 726
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL+ S + + A+ VFS ++ P+ +WNL++R G +ALLLY M +G +
Sbjct: 67 KLISFYSKFNDLESAISVFSLLQEPNTLSWNLIMRTHLDFGLVTEALLLYKKMRESGVKT 126
Query: 78 DKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D FTFP + +A ++ + + GK VH A+K GF D++ +T++++Y +CG V GR M
Sbjct: 127 DAFTFPTINRAVMSLKSDVLLGKMVHCDAMKLGFGYDLYFCNTMIEVYARCGCVYYGRVM 186
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FD+M R +VSWT+MISG + G++ +A
Sbjct: 187 FDEMSPRDLVSWTSMISGYVSEGNVFSA 214
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL +D LL LLD + G+ +++ +F +I C TW LM+ +G +A+
Sbjct: 356 IKVGLCDDVLLA-SLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQNGYFDEAI 414
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQSTL 120
L+ M +G + ++ AC +++ KE+HG + F ++ + +++
Sbjct: 415 HLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFFYILEGDNIHLGTSI 474
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+++Y++CG + R+ F++M + ++WT+MI G G
Sbjct: 475 LNMYIRCGSISSAREYFNRMVAKDNITWTSMIEGYGIHG 513
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ GL + +L + S G +F +I V +WN +I + G + +
Sbjct: 255 IIKNGLLIYGSVQNSILRMYSITGSAKEVESLFVEIYRRDVISWNTLIGFYALRGDAEEM 314
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +N M + T + A I +L +G+++H ++K G D+ + S L+D
Sbjct: 315 VCGFNQMRGEVALSSETLTLVISVFAKIGNLV--EGEKLHSFSIKVGLCDDVLLAS-LLD 371
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG++ ++F ++ RS +W M+SG +G D A
Sbjct: 372 FYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQNGYFDEA 413
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
C +YG+ ++F ++ + +W MI +G+ A L+N M P+ T
Sbjct: 179 CVYYGR-----VMFDEMSPRDLVSWTSMISGYVSEGNVFSAFELFNKMRLE-MEPNSVTL 232
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
++K C A +G+++H +K G VQ++++ +Y G +F ++
Sbjct: 233 IVMLKGCYAYDNFSEGRQLHCYIIKNGLLIYGSVQNSILRMYSITGSAKEVESLFVEIYR 292
Query: 143 RSVVSWTTMISGLAASGDLD 162
R V+SW T+I A GD +
Sbjct: 293 RDVISWNTLIGFYALRGDAE 312
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A F+++ TW MI I G +++AL L+N M+ P++ TF ++
Sbjct: 482 GSISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVERVLPNRVTFLSLL 541
Query: 87 KACIASLAIEKGKEVHGLAVKA--GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
AC S I +G E+ L++K G D+ + ++DL +CG + M +M V +
Sbjct: 542 SACSHSGLIRQGCELF-LSMKWVFGMEPDLDHYTCMVDLLGRCGKIKEALAMIIRMVVVA 600
Query: 145 VVS-WTTMISGLAASGD 160
W +++ GD
Sbjct: 601 DSRIWGALVASCRVHGD 617
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT-DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I G D + K ++ + + D+A VF I P ++W MIR +
Sbjct: 49 QLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPE 108
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL Y LM G +KFTF FV+KA + ++G+ VHG VK GF D+F ++ L+
Sbjct: 109 KALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALI 168
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+YLKCG + +FD+M +VV+W TMI+G GD + A
Sbjct: 169 HMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERA 211
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F + V +W MI A +G + +AL L+ M+ G D ++
Sbjct: 237 GHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSIL 296
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G+ +H ++ D+F+ + L+D+Y KCG +D +F+ M +++
Sbjct: 297 SACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLC 356
Query: 147 SWTTMISGLAASGDLDAA 164
SW M+SGLA G AA
Sbjct: 357 SWNAMLSGLAIHGHGFAA 374
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R L ND L L+D+ + G D A VF+ + ++ +WN M+ L I G AL
Sbjct: 317 RSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALE 376
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G P+ TF V+ AC ++E+G K+ + + + + + ++D+
Sbjct: 377 LFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDIL 436
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASG 159
+ G ++ ++M M + +VV W +++ G
Sbjct: 437 CRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHG 472
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
C VFT N +I GS A LL++ M + + T+ +I C E+ +
Sbjct: 158 CYDVFTRNALIHMYLKCGSITDAHLLFDEMPNH----NVVTWNTMITGCFGCGDTERARR 213
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ G + R++ + ++ Y K G VD R +FD M R VVSW +MIS +G
Sbjct: 214 LFGEMPE----RNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNG 268
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G + + + L+ + S +G + A VF + WN +I ++G +A
Sbjct: 162 VVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEA 221
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G PD FT ++ AC+ A+ G+ VH VK G ++ + L+DL
Sbjct: 222 LTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDL 281
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+ +K+FD+M RSVVSWT++I GLA +G
Sbjct: 282 YSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNG 317
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 5 IRYGL--SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
IR+G+ N + L S A +F+QI+ P++FTWN MIR +
Sbjct: 59 IRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSP 118
Query: 63 ALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L++ M + PD TFPF+ KA + + G+ +H + V+ GF FVQ++L+
Sbjct: 119 AVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLV 178
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y G + ++F+ M R V+W ++I+G A +G + A
Sbjct: 179 HMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEA 221
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL +Q LLDL S G A VF ++ V +W +I L ++G +A
Sbjct: 263 MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEA 322
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
L L+ + G +P + TF V+ AC +++G KE +G+ +
Sbjct: 323 LKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEH------ 376
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
++DL + G V M V + V W T++ G L+
Sbjct: 377 HGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLE 423
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 22 LCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID-GSSLQALLLYNLMICNGFRPDKF 80
CS + +T C F WN +IRA +I + YN M+ G + D
Sbjct: 109 FCSLFNQTFQ--------NCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDH 160
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
TFPFV+K C S I KG EVHG+ K GF D++V +TL+ LY CG ++ R++FD+M
Sbjct: 161 TFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEM 220
Query: 141 RVRSVVSWTTMISGLAASGDLDAA 164
R VVSW T+I L+ +GD A
Sbjct: 221 PERDVVSWNTIIGLLSVNGDYTEA 244
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL++D + L+D+ + G A VF+ R V ++N++I + LQ+L
Sbjct: 490 VRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEV-SYNILIIGYSETDDCLQSL 548
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G +PD +F VI AC A+++GKEVHG+A++ +FV ++L+D Y
Sbjct: 549 NLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFY 608
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG +D ++F+++ + V SW TMI G G+L+ A
Sbjct: 609 TKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETA 648
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G D + L+D+ + G + A +F + ++ +WN MI ++ L+A+
Sbjct: 389 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAI 448
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M G P+ TF V+ AC + GKE+H + V+ G + D+FV ++L+D+Y
Sbjct: 449 RFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMY 508
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG + R +F+ R + VS+ +I G + + D
Sbjct: 509 AKCGCLHSARNVFNTSR-KDEVSYNILIIGYSETDD 543
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL + L+D G VF++ + +WN +I L G AL
Sbjct: 288 VKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDAL 347
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ +MI G +P+ T ++ + + GKE+HG +++ G D+F+ ++L+D+Y
Sbjct: 348 NAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMY 407
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
K G +F + R++VSW MI+ A
Sbjct: 408 AKSGHSTEASTIFHNLDRRNIVSWNAMIANYA 439
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G D + LL L G + A +F ++ V +WN +I L+++G +A
Sbjct: 185 VFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEA 244
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
Y MI +P+ + ++ A E + +H +VK G + + L+D
Sbjct: 245 RNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVD 304
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V ++F++ ++ VSW ++I+GLA G
Sbjct: 305 AYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKG 341
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 1/159 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R L + + LLD + G+ D A +F+QI V +WN MI + G A+
Sbjct: 590 LRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAI 649
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M + + D ++ V+ AC +E+G + + + ++DL
Sbjct: 650 SMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLL 709
Query: 125 LKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G V+ K+ ++ + + W ++ G+++
Sbjct: 710 GRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 748
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++IR G S D +V +LL CS D+A +F P+V+ + +I G+
Sbjct: 54 QLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFD 113
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY+ M+ + PD + ++KAC + LA+ +G+EVH A+K G S + V+ +M+
Sbjct: 114 AIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIME 173
Query: 123 LYLKCGDVDGGRKMFDKMR----VRSVVSWTTMISGLAASGDLDAA 164
LY KCG++ R++F++M + V WT MI G + +++ A
Sbjct: 174 LYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRA 219
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ----IRCPHVFTWNLMIRALTIDG 58
+ ++ GLS+++L+ ++++L G+ A VF + + W MI +
Sbjct: 155 RALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNE 214
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+AL + M RP++FT V+ AC A+E G+ VH K ++FV +
Sbjct: 215 EMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGN 274
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y +CG +D + +FD+M+ R V+++ TMISGL+ +G
Sbjct: 275 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 315
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G D A VF +++ V T+N MI L+++G S QA+ L+ +MI RP
Sbjct: 276 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPT 335
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC ++ G K H + G + ++DL + G ++ +
Sbjct: 336 NVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLI 395
Query: 138 DKMRV 142
M++
Sbjct: 396 RTMKM 400
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+IR G +D KL + + + ++A VF +I P+ F WN +IRA +
Sbjct: 53 MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112
Query: 62 QALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++ + M+ P+K+TFPF+IKA ++ G+ +HG+AVK+ D+FV ++L
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSL 172
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y CGD+D K+F ++ + VVSW +MI+G G D A
Sbjct: 173 IHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ + +D + L+ C F G D A VF+ I+ V +WN MI GS +A
Sbjct: 158 VKSAVGSDVFVANSLIH-CYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + T V+ AC +E G++V + + ++ + + ++D+
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDM 276
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ +++FD M + V+WTTM+ G A S D +AA
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+ WN +I A +G +AL++++ L + + ++ T + AC A+E G+ +H
Sbjct: 329 IVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIH 388
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + V S L+ +Y KCGD++ R++F+ + R V W+ MI GLA G
Sbjct: 389 SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++G+ + + L+ + S G + + VF+ + VF W+ MI L + G +A
Sbjct: 391 IKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEA 450
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ ++ M +P+ TF V AC + +++ + + H + G + + ++D
Sbjct: 451 VDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVD 510
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ + G ++ K + M + S W ++ +L+ A
Sbjct: 511 VLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLA 553
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+R G+ + + LL L + G + A +F + V +WN+MI G +
Sbjct: 52 EHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQ 111
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A L+ LM PDKFTF ++ AC + + G+E+H ++AG + D V + L+
Sbjct: 112 EAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALI 171
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V R++FD M R VSWTT+ A SG
Sbjct: 172 SMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 209
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL+ND + L+ + + G A VF + +W + A G +
Sbjct: 154 RVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEE 213
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L Y+ M+ RP + T+ V+ AC + A+EKGK++H V++ + D+ V + L
Sbjct: 214 SLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTK 273
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+KCG R++F+ + R V++W TMI G SG L+ A
Sbjct: 274 MYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEA 315
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D L+++ S G A VF ++ V +W ++ +++ +
Sbjct: 361 GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTF 420
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ G + +K T+ V+KAC +A++ GKE+H VKAG D+ V + LM +Y KC
Sbjct: 421 KQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKC 480
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G V+ ++F+ M +R VV+W T+I GL +G
Sbjct: 481 GSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNG 512
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF + V WN MIR G +A ++ M+ G PD+ T+ V+ AC
Sbjct: 284 AREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACAR 343
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+ +GKE+H A K G D+ + L+++Y K G + R++FD+M R VVSWTT+
Sbjct: 344 PGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTL 403
Query: 152 ISGLA 156
+ A
Sbjct: 404 LGRYA 408
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G + D + + ++++C+ + + GK+VH ++ G ++++ +TL+ LY CG V+
Sbjct: 23 GPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEA 82
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
R++FDK +SVVSW MISG A G
Sbjct: 83 RQLFDKFSNKSVVSWNVMISGYAHRG 108
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ GL D + L+ + G + A+ VF + V TWN +I L +G L+
Sbjct: 457 EVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLE 516
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
AL Y +M G RP+ TF V+ AC +E+G+
Sbjct: 517 ALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGR 553
>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
Length = 481
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 18 KLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
KLL L + G D A +F Q+ R F WN +I G +A+ LY M+ G
Sbjct: 130 KLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEGV 189
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
D FTFP V+K C +++ G+EVH A++AGF+ D F+ + L+D+Y KCGD+ RK
Sbjct: 190 EADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARK 249
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FDKM R VSW +M++ G
Sbjct: 250 VFDKMPHRDPVSWNSMLTAYVHHG 273
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + D ++ L+D+ S G A VF ++ +WN M+ A G +QA+
Sbjct: 220 IRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAM 279
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G PD + V+ ++SL + G ++HG + G ++ + ++L+ +Y
Sbjct: 280 NIFRQMLLEGCEPDSVSISTVLTG-VSSLGL--GVQIHGWVISQGHEWNLSIANSLIMMY 336
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
G ++ R +F+ M R VVSW ++IS
Sbjct: 337 SNHGRLEKARWVFNLMPERDVVSWNSIISA 366
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G + D + +++ C AI G VH L + +++ + S L+ LY CG +D
Sbjct: 84 KGIKIDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDD 143
Query: 133 GRKMFDKMRVR--SVVSWTTMISGLAASGDLDAA 164
+FD+M R S W ++ISG A G D A
Sbjct: 144 AHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEA 177
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + + L+ + S +G+ + A VF+ + V +WN +I A +A
Sbjct: 317 VISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHC---KRREA 373
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L + M G +PDK TF ++ AC
Sbjct: 374 LAFFEQMEGAGVQPDKITFVSILSAC 399
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 82/136 (60%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL + +G +A VF ++ +F+WN+++ T G +AL LY+ ++ G RPD
Sbjct: 75 LLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPD 134
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+TFP V+++C ++ + +G+EVH V+ F D+ V + L+ +Y+KCGDV R +FD
Sbjct: 135 VYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFD 194
Query: 139 KMRVRSVVSWTTMISG 154
KM R +SW MISG
Sbjct: 195 KMPTRDRISWNAMISG 210
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ L+D+ S + + AL +F QI V +W +I L I+ +AL+ + MI
Sbjct: 373 VVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILK 432
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+P+ T + AC A+ GKE+H A+KAG D F+ + ++DLY++CG +
Sbjct: 433 S-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTA 491
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
F+ + + V +W +++G A G
Sbjct: 492 LNQFN-LNEKDVGAWNILLTGYAQKG 516
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + + L+ + G A VFS + C V +W +I + +A
Sbjct: 262 VVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKA 321
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M G PD+ T V+ AC + ++ G ++H LA + G + V ++L+D+
Sbjct: 322 LETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDM 381
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC ++ ++F ++ + V+SWT++I+GL
Sbjct: 382 YSKCKRIEKALEIFHQIPDKDVISWTSVINGL 413
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+ D +V L+ + G A ++F ++ +WN MI + L+
Sbjct: 161 VVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEG 220
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M PD T VI AC L E+ G ++H V+ + ++ V ++L+
Sbjct: 221 LELFFRMRELSIDPDLMTMTSVISAC-ELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQ 279
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+YL G +F M R VVSWTT+ISG
Sbjct: 280 MYLSVGHWKEAESVFSGMECRDVVSWTTIISG 311
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ D L +LDL G+ AL F+ + V WN+++ G +
Sbjct: 464 LKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVM 522
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDL 123
L+ M+ + PD TF ++ AC S + +G E + V + ++ + ++DL
Sbjct: 523 ELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDL 582
Query: 124 YLKCGDVDGGRKMFDKMRVR 143
+ G ++ + ++M ++
Sbjct: 583 LGRAGKLNEAHEFIERMPIK 602
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL L+ KL+ S YG A VF + P VF WN +IR + +
Sbjct: 43 RLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQD 102
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALL+Y+ M PD FTFP ++KAC ++ G+ VH + GF D+FVQ+ L+
Sbjct: 103 ALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIA 162
Query: 123 LYLKCGDVDGGRKMFDKMRV--RSVVSWTTMISGLAASGD 160
LY KC + R +F+ + + R++VSWT ++S A +G+
Sbjct: 163 LYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + L+ L + + G+ A ++F +++ P++ WN MI +G + A
Sbjct: 248 VMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDA 307
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ MI RPD + I AC ++E+ + + ++ + D+F+ S L+D+
Sbjct: 308 IDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDM 367
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ KCG V+ R +FD+ R VV W+ MI G G A
Sbjct: 368 FAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREA 408
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSS 60
++ R G D + L+ L + + A VF + P + +W ++ A +G
Sbjct: 144 QVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++AL +++ M +PD V+ A +E+G+ +H +K G + + +L
Sbjct: 204 VEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISL 263
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V + +FDKM+ +++ W MISG A +G
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 1/154 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + R +D + L+D+ + G + A VF + V W+ MI + G +
Sbjct: 347 EYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAR 406
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ LY M +G P+ TF ++ AC S + +G + + ++
Sbjct: 407 EAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACII 466
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
DL + G +D ++ M V+ V+ W ++S
Sbjct: 467 DLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLD--LCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++R L+ D L KL++ + G +A +FS P++F WN +IR +I S +
Sbjct: 30 MVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPI 89
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY M G P+ +TF FV+KAC L + +G+E+H VK G + + + L+
Sbjct: 90 TAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLI 149
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
LY CG +D MFD+M SW+TM+SG A +G
Sbjct: 150 KLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQ 188
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ GL + LV L+ L + G D+A ++F ++ P +W+ M+ +G +++
Sbjct: 132 QIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVE 191
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M D FT V+ C A++ GK VH K G D+ + + L+
Sbjct: 192 ALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVG 251
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D K+F M R V +W+TMI+G A G + A
Sbjct: 252 MYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKA 293
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G+ D +L L+ + S G D+AL VF + V W+ MI I G +AL
Sbjct: 236 KEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQ 295
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLY 124
L++ M + P+ TF V+ AC S +EKG ++ + + + + ++DL+
Sbjct: 296 LFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLF 355
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ G V K M + +VV W T++ G D
Sbjct: 356 CRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKD 394
>gi|255547321|ref|XP_002514718.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546322|gb|EEF47824.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 399
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F+Q++ P+ F ++ +IR +I+G +++ +Y+ M P FTF + KAC A
Sbjct: 96 IFNQVKFPNPFLYSAVIRGYSIEGILSESVKVYSFMRMEHVGPVSFTFSAIFKACGAVGD 155
Query: 95 IEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ G+++H ++ GF D+FV +TL+D+Y+KCG ++ GRK+F+ M + V+SWT MI
Sbjct: 156 LHLGRQMHAQSILIGGFCSDLFVSNTLIDMYIKCGVLECGRKVFNAMPEKDVISWTEMIV 215
Query: 154 GLAASGDLDAA 164
A SGD+D+A
Sbjct: 216 AYAKSGDMDSA 226
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A ++F + + W M+ + + +A+ + M G D+ T VI
Sbjct: 221 GDMDSAHVLFDGLPVKDMVAWTAMVTGFSQNAKPREAIQFFERMQDAGIGTDEVTLVGVI 280
Query: 87 KACIASLAIEKGKEVHGLAVKA-----GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
AC A E + +A K G+S + + S L+D+Y KCG VD K+F ++
Sbjct: 281 SACSQLGAAEYADWIRDIAEKQYGYDWGYS--VVLGSALIDMYSKCGSVDCAYKVFKGLK 338
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
R+V S+++MI G A G DAA
Sbjct: 339 DRNVFSYSSMIMGFAMHGRADAA 361
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+K Y +L L+D+ S G D A VF ++ +VF+++ MI + G +
Sbjct: 300 EKQYGYDWGYSVVLGSALIDMYSKCGSVDCAYKVFKGLKDRNVFSYSSMIMGFAMHGRAD 359
Query: 62 QALLLYNLMICNGFRPDK 79
A+ L++ MI G P+K
Sbjct: 360 AAIKLFHEMIKTGTAPNK 377
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLC----SFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTI 56
++R L +D + +LL LC +F T+ +A +FSQI+ P++F +NL+IR +
Sbjct: 35 LLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFST 94
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+A Y M+ + PD TFPF+IKA + G++ H V+ GF D++V
Sbjct: 95 GAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYV 154
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++L+ +Y CG + ++F +M R VVSWT+M++G G ++ A
Sbjct: 155 ENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENA 202
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 72/138 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A +F ++ ++FTW++MI + +A+ L+ M G ++ VI
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+C A+E G+ + VK+ + ++ + + L+D++ +CGD++ +F+ + +
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSL 316
Query: 147 SWTTMISGLAASGDLDAA 164
SW+++I GLA G A
Sbjct: 317 SWSSIIKGLAVHGHAHKA 334
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +++ ++ + +L L+D+ G + A+ VF + +W+ +I+ L + G +
Sbjct: 273 EYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAH 332
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTL 120
+A+ ++ MI GF P TF V+ AC +EKG E++ + G + +
Sbjct: 333 KAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCI 392
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR 143
+D+ + G + KM V+
Sbjct: 393 VDMLGRAGKLAEAENFILKMHVK 415
>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 91/161 (56%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q II GL + ++ KL+ + + G A +F ++ P+VF W ++ + +G S
Sbjct: 47 QHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSD 106
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ + Y+ M G PDK+ FP V +AC L +E G +VH V G D+ V ++L+
Sbjct: 107 ECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLI 166
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
D+Y K GDV GR++FD+M R V+SW +MISG +G L+
Sbjct: 167 DMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLE 207
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH---------------VFT 46
Q+I YG+ + +D SFY ALL ++C V T
Sbjct: 312 QEIHGYGI--------RSVDSSSFYKSAGAALLTM-YVKCKRIQDALNVFELMDRFDVVT 362
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN MI AL ++ M +G ++ T V+ AC ++ GK+VH
Sbjct: 363 WNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSGKQVHAYIT 418
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K FS + V + L+ +Y KCG + +F M R +VSW TMI G G
Sbjct: 419 KNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHG 471
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D + ++D G D A +F QI+ P++ + ++ + G+ ++L ++
Sbjct: 220 GFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIF 279
Query: 68 NLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF--VQSTLMDLY 124
M+ PD + V+ +C A+ G+E+HG +++ S + + L+ +Y
Sbjct: 280 REMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMY 339
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+KC + +F+ M VV+W MI G
Sbjct: 340 VKCKRIQDALNVFELMDRFDVVTWNAMILGF 370
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
F +++ C S A+ +GK++H + G F+ + L+ +Y CGD+ + +FDK
Sbjct: 24 FQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDK 83
Query: 140 MRVRSVVSWTTMISGLAASG 159
+ +V +WT ++ + +G
Sbjct: 84 LSQPNVFAWTAILGFYSRNG 103
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 35/163 (21%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++ G D + L+D+ S G VF ++ V +WN MI
Sbjct: 148 KDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGY------- 200
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+CNGF F ++ +AS+ I GF DM +T+M
Sbjct: 201 ---------VCNGF------LEFSVEL-LASMRIR------------GFEPDMVTWNTVM 232
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D Y + G D ++F++++ +++S TT++SG + G+ + +
Sbjct: 233 DAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKS 275
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 33/195 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF-YGKTDHALL--------------------------- 34
K+ R G+ N+Q+ + +L C GK HA +
Sbjct: 385 KMQRSGIMNNQITISTVLPACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGT 444
Query: 35 ---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+FS + + +WN MI + G AL L M + P+ TF + AC
Sbjct: 445 AYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSH 504
Query: 92 SLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWT 149
S +++G E+ H + GF+ M S ++DL + ++ +KM ++ S W+
Sbjct: 505 SGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWS 564
Query: 150 TMISGLAASGDLDAA 164
+++ A ++ A
Sbjct: 565 ALLAACRAQQNVSVA 579
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 77/133 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF ++ V +W MI A G S +AL ++ M+ GFRP++FT +
Sbjct: 238 GDVAAASTVFDRMASRDVISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSAL 297
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A+ GK++HG VK + D+ V S L+ +Y +CG+V + +FDKM R+ +
Sbjct: 298 KACAEEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTI 357
Query: 147 SWTTMISGLAASG 159
+WT+MISG A SG
Sbjct: 358 TWTSMISGYAQSG 370
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 74/138 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ +A + + W MI G +++AL + M+ +G P+ +T+ +
Sbjct: 440 GEHTYATRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSAL 499
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ G+ +HG+ K ++FV +L+D+Y++CG VD R++FD M ++V
Sbjct: 500 KACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLV 559
Query: 147 SWTTMISGLAASGDLDAA 164
+W MI+G +G + A
Sbjct: 560 TWKVMITGFTQNGRSEEA 577
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 21 DLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L S Y + D +A VF ++ + +W M+ G + L M+ G +
Sbjct: 129 NLISAYVRFDEVANARKVFDEMPERSIVSWTAMMNGYQKLGCHGEVARLLMDMLIAGVQG 188
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++K+C G++VH VK G+S ++ V S + Y +CGDV +F
Sbjct: 189 NSLTFVCLLKSCGERCDARLGQQVHCCVVKGGWS-NVIVDSAITHFYAQCGDVAAASTVF 247
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D+M R V+SWTTMI+ G D A
Sbjct: 248 DRMASRDVISWTTMITAYVQHGHSDKA 274
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLD--------LCSFY---GKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G +V+KL L + Y G+ A VF ++ + TW M
Sbjct: 303 EKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSM 362
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G +A+LL+ M + T ++ AC + +I GKE+H +K
Sbjct: 363 ISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCM 422
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ + STL+ Y + G+ ++ + M R V+WT MISG
Sbjct: 423 EENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMISG 466
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD F ++ C L + + H +A+++ S +FV + L+ Y++ +V RK+
Sbjct: 90 PDAEAVAFWLRFCRRELDVRRA---HAVALRSLGSLGVFVSNNLISAYVRFDEVANARKV 146
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
FD+M RS+VSWT M++G G
Sbjct: 147 FDEMPERSIVSWTAMMNGYQKLG 169
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ GK D A VF + ++ TW +MI T +G S +AL LM G+ D
Sbjct: 533 LIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQNGRSEEALKYMFLMQQEGYVVD 592
Query: 79 KFTFPFVIKAC 89
+F V+ +C
Sbjct: 593 EFVLSTVLSSC 603
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 52/207 (25%)
Query: 5 IRYGLSNDQLLVRKLLDLCS----FYGKTDHALLVFSQIRCPHVFTWNLMIRALTI--DG 58
I+ G D L ++L C+ + D+A +F+Q+ + F+WN +IR + +
Sbjct: 47 IKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDED 106
Query: 59 SSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+L A+ L+ M+ + F P++FTFP V+KAC + I++GK++HGLA+K GF D FV
Sbjct: 107 KALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVM 166
Query: 118 STLMDLYLKC---------------------------------------------GDVDG 132
S L+ +Y+ C GD
Sbjct: 167 SNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKA 226
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FDKMR RSVVSW TMISG + +G
Sbjct: 227 ARMLFDKMRQRSVVSWNTMISGYSLNG 253
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A ++F ++R V +WN MI +++G A+ ++ M RP+ T V+
Sbjct: 222 GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVL 281
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A ++E G+ +H A +G D + S L+D+Y KCG ++ +F+++ +V+
Sbjct: 282 PAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVI 341
Query: 147 SWTTMISGLAASG 159
+W+ MI+G A G
Sbjct: 342 TWSAMINGFAIHG 354
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D +L L+D+ S G + A+ VF ++ +V TW+ MI I G + A+ +
Sbjct: 304 GIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 363
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLK 126
M G RP + ++ AC +E+G+ V G + ++DL +
Sbjct: 364 CKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR 423
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
G +D + M ++ V W ++ G+++
Sbjct: 424 SGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVE 460
>gi|218189272|gb|EEC71699.1| hypothetical protein OsI_04200 [Oryza sativa Indica Group]
Length = 338
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF QI+ P F WN++IR L + A+ Y G PD TFPF++KAC A
Sbjct: 21 VFDQIKAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 80
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ +G+++H K G D+FV ++L+ LY CG++ R +FD+M V+ VVSW ++I G
Sbjct: 81 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 140
Query: 155 LA 156
+
Sbjct: 141 YS 142
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL +D + L+ L + G +A VF ++ V +WN +I +
Sbjct: 91 ITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDI 150
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIA----SLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L L+ LM G + DK T V+ AC S+A + + ++ D+++ +T
Sbjct: 151 LALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV----DVYLGNT 206
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D + + G + K+F M+VR++V+ MI+ A D+ +A
Sbjct: 207 LVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSA 251
>gi|255555919|ref|XP_002518995.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
gi|223541982|gb|EEF43528.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
Length = 1203
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+++G ++ L+ C S +G D+A +F QI P F +N MI+ D
Sbjct: 914 QILKWGFFSNPFCASNLVATCALSHWGSMDYACSIFRQIDQPGSFEYNTMIKGYVSDFKM 973
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
ALLLY M+ + D FT+P +IKAC AI++ ++HG K GF D++VQ++L
Sbjct: 974 ENALLLYYEMLEKEVQSDNFTYPALIKACAWLRAIDESMQIHGHIFKLGFEEDLYVQNSL 1033
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+++Y KCG ++ +F ++ + + SW+++I+ ++ G
Sbjct: 1034 INMYGKCGKIELSCDVFKQIEHKDIASWSSIIAAHSSLG 1072
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G D + L+++ GK + + VF QI + +W+ +I A + G +
Sbjct: 1018 IFKLGFEEDLYVQNSLINMYGKCGKIELSCDVFKQIEHKDIASWSSIIAAHSSLGLWSEC 1077
Query: 64 LLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ + MI + +RP++ V+ AC A++ G+ +HG+ ++ ++ VQ++L+D
Sbjct: 1078 VQFFEEMIQDRSYRPEESLLVSVLSACSHLGALDLGRCLHGVLLRNFSELNVTVQTSLID 1137
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+ CG ++ G +F +M ++ S++ MISGLA G
Sbjct: 1138 MYINCGCIEKGFCLFQRMSKKNHFSYSVMISGLAMHG 1174
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ GL +D KL+ + + +A + ++I P+ FT N +IRA +
Sbjct: 62 MLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTP 121
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL ++ M+ PDK++F FV+KAC A E+G+++HGL +K+G D+FV++TL
Sbjct: 122 EVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTL 181
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++Y + G + RK+ D+M VR VSW +++S G +D A
Sbjct: 182 VNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEA 225
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFV 85
G A VF + V +WN M+ A G + L ++N M+ + +PD FT V
Sbjct: 251 GLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSV 310
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + ++ +G+ VH K G + F+ + L+D+Y KCG +D ++F R V
Sbjct: 311 LSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370
Query: 146 VSWTTMISGLAASG 159
+W ++IS L+ G
Sbjct: 371 STWNSIISDLSVHG 384
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++G+ + L L+D+ S GK D AL VF V TWN +I L++ G A
Sbjct: 330 IDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDA 389
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L +++ M+ GF+P+ TF V+ AC
Sbjct: 390 LEIFSEMVYEGFKPNGITFIGVLSAC 415
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQ 62
+I G + L+ KLL+L G + +F + P F + +IR+ + S+
Sbjct: 35 VIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVY 94
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L Y M+ + P +TF VIK+C +A+ G+ +HG + GF D++VQ+ LM
Sbjct: 95 SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMS 154
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + RK+FDKMR RSVV+W +MISG +G
Sbjct: 155 FYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNG 191
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L SFYGK +A VF ++R V TWN MI +G + +A+ L++ M G P+
Sbjct: 152 LMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPN 211
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF V+ AC A G VH AV G ++ + ++L+++Y +CG+V R++FD
Sbjct: 212 SATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFD 271
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M+ R+VV+WT MISG +G
Sbjct: 272 SMKERNVVAWTAMISGYGTNG 292
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + +L L+++ + G A VF ++ +V W MI +G QA+ L+
Sbjct: 242 GLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELF 301
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M NG P+ TF V+ AC + + +G+ V
Sbjct: 302 HEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRV 335
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K+I+ GL +D + ++D+ G D A + +I V +WN ++ +++ S +
Sbjct: 477 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 536
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M+ G +PD FTF V+ C IE GK++HG +K D ++ STL+D
Sbjct: 537 AQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVD 596
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCGD+ +F+K+ R VSW MI G A G
Sbjct: 597 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 633
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G D + +LDL YGK A L+F ++ +WN +I AL +G
Sbjct: 378 IKSGFDVDICVNNAVLDL---YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+L +N M+ G +PD FT+ V+KAC A ++E G VH +K+G D FV ST++
Sbjct: 435 DTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVV 494
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG +D +K+ D++ + VVSW ++SG + + + + A
Sbjct: 495 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEA 537
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + +L S G A+ +F + P V +WN ++ G +++ L+ M
Sbjct: 82 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PD+ TF ++K+C A + G +VH LAVK G D+ S L+D+Y KC +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 132 GGRKMFDKMRVRSVVSWTTMISG 154
F M R+ VSW I+G
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAG 224
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ S+D+++ ++D+ + A F + V T N M+ L G ++A+
Sbjct: 277 IKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAM 336
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ MI + R D + V AC + +G++VH LA+K+GF D+ V + ++DLY
Sbjct: 337 GLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLY 396
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
KC + +F M+ + VSW +I+ L +G D
Sbjct: 397 GKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL D VR L YGK D AL F + + +W I + +
Sbjct: 176 VKTGLEID---VRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 232
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L L+ M G + ++ ++C A + G+++H A+K FS D V + ++
Sbjct: 233 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIV 292
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K + R+ F + +V + M+ GL +G
Sbjct: 293 DVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 330
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + +D+ + L+D+ + G +LLVF ++ +WN MI + G ++
Sbjct: 578 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 637
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL ++ M P+ TF V++AC
Sbjct: 638 ALRMFERMQKENVVPNHATFVAVLRAC 664
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLA-------VKAGFSRDMFVQSTLMDLYLKCGD 129
P + TF V ++C + G+E V +GF FV + L+ +Y +C
Sbjct: 13 PARVTFSRVFQSCA-----QAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAG 67
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R++FD M R VSW TM++ + +GD+ A
Sbjct: 68 AACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K+I+ GL +D + ++D+ G D A + +I V +WN ++ +++ S +
Sbjct: 477 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 536
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M+ G +PD FTF V+ C IE GK++HG +K D ++ STL+D
Sbjct: 537 AQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVD 596
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCGD+ +F+K+ R VSW MI G A G
Sbjct: 597 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 633
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G D + +LDL YGK A L+F ++ +WN +I AL +G
Sbjct: 378 IKSGFDVDICVNNAVLDL---YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+L +N M+ G +PD FT+ V+KAC A ++E G VH +K+G D FV ST++
Sbjct: 435 DTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVV 494
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG +D +K+ D++ + VVSW ++SG + + + + A
Sbjct: 495 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEA 537
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + +L S G A+ +F + P V +WN ++ G +++ L+ M
Sbjct: 82 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PD+ TF ++K+C A + G +VH LAVK G D+ S L+D+Y KC +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201
Query: 132 GGRKMFDKMRVRSVVSWTTMISG 154
F M R+ VSW I+G
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAG 224
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ S+D+++ ++D+ + A F + V T N M+ L G ++A+
Sbjct: 277 IKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAM 336
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ MI + R D + V AC + +G++VH LA+K+GF D+ V + ++DLY
Sbjct: 337 GLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLY 396
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
KC + +F M+ + VSW +I+ L +G D
Sbjct: 397 GKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL D VR L YGK D AL F + + +W I + +
Sbjct: 176 VKTGLEID---VRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 232
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L L+ M G + ++ ++C A + G+++H A+K FS D V + ++
Sbjct: 233 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIV 292
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K + R+ F + +V + M+ GL +G
Sbjct: 293 DVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 330
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + +D+ + L+D+ + G +LLVF ++ +WN MI + G ++
Sbjct: 578 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 637
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL ++ M P+ TF V++AC
Sbjct: 638 ALRMFERMQKENVVPNHATFVAVLRAC 664
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLA-------VKAGFSRDMFVQSTLMDLYLKCGD 129
P + TF V ++C + G+E V +GF + FV + L+ +Y +C
Sbjct: 13 PARVTFSRVFQSCA-----QAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAG 67
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R++FD M R VSW TM++ + +GD+ A
Sbjct: 68 AACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCG 128
M+ +GF P+ F + C+ + V A RD +T++ Y G
Sbjct: 43 MVVSGFVPNAF-----VSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAG 97
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+ +FD M VVSW ++SG G
Sbjct: 98 DISTAVALFDGMPDPDVVSWNALVSGYCQRG 128
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 52/207 (25%)
Query: 5 IRYGLSNDQLLVRKLLDLCS----FYGKTDHALLVFSQIRCPHVFTWNLMIRALTI--DG 58
I+ G D L ++L C+ + D+A +F+Q+ + F+WN +IR + +
Sbjct: 40 IKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDED 99
Query: 59 SSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+L A+ L+ M+ + F P++FTFP V+KAC + I++GK++HGLA+K GF D FV
Sbjct: 100 KALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVM 159
Query: 118 STLMDLYLKC---------------------------------------------GDVDG 132
S L+ +Y+ C GD
Sbjct: 160 SNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKA 219
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FDKMR RSVVSW TMISG + +G
Sbjct: 220 ARMLFDKMRQRSVVSWNTMISGYSQNG 246
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G A ++F ++R V +WN MI + +G A+ ++ M RP+ T V
Sbjct: 215 GDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSV 274
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ A ++E G+ +H A +G D + S L+D+Y KCG ++ +F+++ +V
Sbjct: 275 LPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENV 334
Query: 146 VSWTTMISGLAASG 159
++W+ MI+G A G
Sbjct: 335 ITWSAMINGFAIHG 348
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D +L L+D+ S G + A++VF ++ +V TW+ MI I G + A+ +
Sbjct: 298 GIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 357
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
M G RP + ++ AC + +E+G+
Sbjct: 358 CKMRQAGVRPSDVAYINLLTACSHAGLVEEGR 389
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT----DHALLVFSQIRCP-HVFTWNLMIRALTID 57
++I + D+L + K++ +F GK+ ++ ++ IR F++N ++ + +
Sbjct: 28 QLISRDILRDELFINKVV---TFLGKSADFATYSSVILHSIRSVLSSFSYNTLLSSYAVC 84
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ +Y + + NGF PD FTFP V KAC I +GK++HG K GF D++VQ
Sbjct: 85 DKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQ 144
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+ Y CG+ K+FD+M VR VVSWT +I+G +G
Sbjct: 145 NSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTG 186
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM-ICNGFRPDKFTFPFVIKACI 90
A+ VF +++ +WN MI L S +A+ L+++M +G +PD V+ AC
Sbjct: 258 AMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACA 317
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ A++ G+ VH + AG D + + ++D+Y KCG ++ K+F+ +R ++V +W
Sbjct: 318 SLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNA 377
Query: 151 MISGLAASG 159
++ GLA G
Sbjct: 378 LLGGLAIHG 386
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++ G+ D + ++D+ + G + AL +F+ IR +VFTWN ++ L I G
Sbjct: 330 EYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALLGGLAIHGHGH 389
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKA-GFSRDMFVQST 119
++L + M+ GF+P+ TF ++ AC + +++G+ H + + S +
Sbjct: 390 ESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLSPKLEHYGC 449
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVV 146
L+DL+ + G +D ++ M V+ V
Sbjct: 450 LIDLFCRAGLLDEALELIKAMPVKPDV 476
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G +D + L+ G++ +A VF Q+ V +W +I T G +A
Sbjct: 132 VTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M P+ T+ + + + GK +HGL +K + + L+D+
Sbjct: 192 LDTFSKM---DVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDM 248
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y+KC + +F +++ + VSW +MISGL
Sbjct: 249 YVKCEQLSDAMTVFGELQKKDKVSWNSMISGL 280
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I+ GLS+D L ++++ C + GK +A VF I P +F WN MI+ +
Sbjct: 31 IKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQN 90
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y LM+ + +PD+FTFPF++K ++A++ GK + AVK GF ++FVQ +
Sbjct: 91 GVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIH 150
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ C VD RK+FD VV+W M+SG
Sbjct: 151 MFSLCRLVDLARKVFDMGDAWEVVTWNIMLSG 182
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 69/138 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A F QI +W MI ++AL L+ M + +PD+FT ++
Sbjct: 288 GQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSIL 347
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ V K D FV + L+D+Y KCG+V +K+F +M +
Sbjct: 348 TACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKF 407
Query: 147 SWTTMISGLAASGDLDAA 164
+WT MI GLA +G + A
Sbjct: 408 TWTAMIVGLAINGHGEEA 425
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 81/164 (49%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ +++G ++ + + + + S D A VF V TWN+M+
Sbjct: 130 LNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQF 189
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++ +L+ M G P+ T ++ AC +E GK ++ R++ +++ L
Sbjct: 190 KKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVL 249
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D++ CG++D + +FD M+ R V+SWT++++G A G +D A
Sbjct: 250 IDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLA 293
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + + ND + L+D+ G A VF ++ FTW MI L I+G +A
Sbjct: 366 IDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEA 425
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMD 122
L +++ MI PD+ T+ V+ AC + +EKG+ + ++ G ++ ++D
Sbjct: 426 LAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVD 485
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G ++ ++ M V+ + + W +++ ++ A
Sbjct: 486 LLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLA 528
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSL 61
II GL + + KL+ + + + VF ++ P +V+ WN +IRALT +G
Sbjct: 98 IITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYXWNSIIRALTHNGLFS 156
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL LY+ +PD +TFP VI AC L E K +H + GF D+++ + L+
Sbjct: 157 EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALI 216
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y + D+D RK+F++M +R VVSW ++ISG A+G + A
Sbjct: 217 DMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 259
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D + L+D+ + D A VF ++ V +WN +I +G +
Sbjct: 199 RVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE 258
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +Y G PD +T V++AC ++E+G +HGL K G +D+ V + L+
Sbjct: 259 ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 318
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K + GR++FDKM +R VSW TMI G + G
Sbjct: 319 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 355
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VFS ++C +WN MI +GS +A+ L+ +M + +PD T+ ++
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGD 490
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ GKE+H K GF+ ++ V +TL+D+Y KCG++ K+F+ M+ R +++W T+I+
Sbjct: 491 LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 550
Query: 155 LAASGDLD 162
S D +
Sbjct: 551 CVHSEDCN 558
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G +++ ++ L+D+ + G+ +L VF ++ + TWN +I +
Sbjct: 501 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 560
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + + M G PD T ++ C A +GKE+HG K G D+ V + L+++
Sbjct: 561 LRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEM 620
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG + ++F M+ + VV+WT +IS G+
Sbjct: 621 YSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGE 657
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDL-CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I + G+ D ++ LL + C F G D +F ++ +WN MI + G +
Sbjct: 301 IEKIGIKKDVIVNNGLLSMYCKFNGLID-GRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 359
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++ L+ M+ N F+PD T +++AC +E GK VH + +G+ D + L++
Sbjct: 360 SIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 418
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG++ +++F M+ + VSW +MI+ +G D A
Sbjct: 419 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEA 460
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL +D + L+++ S G ++ VF ++ V TW +I A + G +A
Sbjct: 602 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 661
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ + M G PD F +I AC S +E+G H + + + ++D
Sbjct: 662 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 721
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + +D M ++ S W ++S SGD + A
Sbjct: 722 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIA 764
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I L +D +LLD S KT ++A LVF+QI P+ F N M++ T +
Sbjct: 33 QLITTNLISDTFAASRLLD--SVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESST 90
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL Y M G D +T+PFV+KAC A + +G V G AVK GF D+FV +
Sbjct: 91 PERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNG 150
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y +CG+ R +FD + +VSW +M+ G G+++ A
Sbjct: 151 LISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENA 195
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
++D + G+ + A +F ++ +V +W++MI S +AL L+ M+C G +PD
Sbjct: 245 MIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPD 304
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + + AC A+++G+ +H + D+ VQ+ L+D+YLKCG D R +F+
Sbjct: 305 RVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFN 364
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M R+VVSW MI GL +G
Sbjct: 365 SMPERNVVSWNVMIVGLGMNG 385
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ G D +V L+ + G+T A VF + +WN M+ G
Sbjct: 135 EAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMEN 194
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV--KAGFSRDMFVQSTL 120
A +++ M P++ + I I + G EV+ V + +RD+ +++
Sbjct: 195 AQNMFDEM------PERDVVSWSI--MIDGYGKKMG-EVNRARVFFDSMPTRDLVSWNSM 245
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D Y K G+++ R++FBKM ++V+SW+ MI G A D A
Sbjct: 246 IDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEA 289
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 78/134 (58%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G +AL +F +R F WN+MIR +G A+ Y+ M G R D FT+PFVI
Sbjct: 74 GYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVI 133
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC + +G+ VHG +K+G D+++ ++L+ +Y K G ++ +F +M VR +V
Sbjct: 134 KACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLV 193
Query: 147 SWTTMISGLAASGD 160
SW +MISG + GD
Sbjct: 194 SWNSMISGYVSVGD 207
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 84/154 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K+I+ GL D + L+ + + G + A +VF ++ + +WN MI G +
Sbjct: 151 KVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWR 210
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L + M +G + D+F+ ++ AC + GKE+H +++ D+ VQ++L+D
Sbjct: 211 SLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVD 270
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+Y KCG +D ++FD++ +S+V+W MI G +
Sbjct: 271 MYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYS 304
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R L D ++ L+D+ + G+ D+A +F QI + WN MI +++ S +
Sbjct: 252 QMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFE 311
Query: 63 ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ M G PD T ++ C AI GK VHG A++ GF + +++ L+
Sbjct: 312 SFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALV 371
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D+Y +CG + +F +M R+++SW MI+ +G+
Sbjct: 372 DMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGE 410
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G +L L+D+ GK A +F Q+ ++ +WN MI + T +G + +A+
Sbjct: 356 IRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAM 415
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + +PD T ++ A ++ + +++HG K + FV ++++ +Y
Sbjct: 416 TLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMY 475
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++ R++FD+M + V+SW T+I A G
Sbjct: 476 GKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHG 510
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 26 YGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
YGK + A +F ++ V +WN +I A I G ++ L++ M GF P+ TF
Sbjct: 475 YGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTF 534
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKMFDKM 140
++ +C + + +G E ++K ++ + ++ ++DL + G++D + ++M
Sbjct: 535 VSLLLSCSVAGLVNEGWEYFN-SMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEM 593
Query: 141 RVRSVVS-WTTMISGLAASGDLDAA 164
+ W ++++ GD++ A
Sbjct: 594 PLAPTARIWGSLLTASRNKGDVELA 618
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + YGK D AL F TW+ MI G S +AL L+ M NG +P
Sbjct: 255 LVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPS 314
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FTF VI AC A+E+GK++HG ++KAG+ ++ + L+D+Y KCG + RK FD
Sbjct: 315 EFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFD 374
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ +V WT+MISG A +G+ + A
Sbjct: 375 YLKEPDIVLWTSMISGYAQNGENETA 400
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 77/142 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A F ++ P + W MI +G + AL LY M P
Sbjct: 356 LVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPH 415
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T V++AC + A+E+GK++H +K GFS ++ + S L +Y KCG ++ G +F
Sbjct: 416 ELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFR 475
Query: 139 KMRVRSVVSWTTMISGLAASGD 160
+M R +++W MISGL+ +G+
Sbjct: 476 RMPSRDIMTWNAMISGLSQNGE 497
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G + L L++L + G A LVF I V +WN +I + G+
Sbjct: 35 QLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGY 94
Query: 63 ALL--LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ + L+ M P+ TF V A +S G + H LA+K D+FV S+L
Sbjct: 95 SFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSL 154
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+++Y K G + RK+FD + R+ VSW T+ISG A
Sbjct: 155 INMYCKIGCMLDARKVFDTIPERNTVSWATIISGYA 190
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF I + +W +I ++ + +A L+ LM DKF + V+ A
Sbjct: 170 VFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDL 229
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ GK++H LA+K G V + L+ +Y KCG +D K F+ + ++W+ MI+G
Sbjct: 230 VHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITG 289
Query: 155 LAASGDLDAA 164
A +GD A
Sbjct: 290 YAQAGDSHEA 299
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P +F ++ C ++KGK +H ++ G +++ ++L++LY KCG + + +
Sbjct: 8 PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLV 67
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
F+ + + VVSW +I+G + G
Sbjct: 68 FESITNKDVVSWNCLINGYSQKG 90
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+YG S + + L + + G + LVF ++ + TWN MI L+ +G L+
Sbjct: 441 QTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLK 500
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
AL L+ + +PD TF V+ AC +E+GK
Sbjct: 501 ALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGK 537
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQ 62
+I GL + KL+D S + + +L VF ++ +V+ WN +IRA + +G +
Sbjct: 30 VISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPE 89
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL Y + + PDK+TFP VIKAC E G V+ + GF D+FV + L+D
Sbjct: 90 ALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVD 149
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y + G + R++FD+M VR +VSW ++ISG ++ G + A
Sbjct: 150 MYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+ D + L+D+ + G+ +L +FS + TWN +I A G L
Sbjct: 435 IKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGL 494
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M + PD TF + C ASLA ++ GKE+H ++ G+ ++ + + L+++
Sbjct: 495 QVTTQMRKSEVVPDMATFLVTLPMC-ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ ++F++M R VV+WT MI G+ + A
Sbjct: 554 YSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKA 594
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A VF+ + C +WN +I G ++A+ L+ +M+ + D
Sbjct: 348 LIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQAD 407
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T+ +I ++ GK +H +K+G D+ V + L+D+Y KCG+V K+F
Sbjct: 408 HITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFS 467
Query: 139 KMRVRSVVSWTTMISGLAASGDL 161
M V+W T+IS GD
Sbjct: 468 SMGTGDTVTWNTVISACVRFGDF 490
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ G +D + L+D+ S G A VF ++ + +WN +I + G
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +Y+ + + PD FT V+ A L +++G+ +HG A+K+G + + V + L+
Sbjct: 190 EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+YLK R++FD+M VR VS+ TMI G
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICG 282
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Query: 25 FYGKTDHALLVFSQIRCPHVFTWNLMI---RALTIDGSSLQALLLYNLMICNGFRPDKFT 81
F TD A VF ++ ++N MI L + S++ + L NL + F+PD T
Sbjct: 255 FRRPTD-ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVR-MFLENL---DQFKPDLLT 309
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
V++AC + K ++ +KAGF + V++ L+D+Y KCGD+ R +F+ M
Sbjct: 310 VSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSME 369
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+ VSW ++ISG SGDL A
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEA 392
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G ++ + L+++ S G +++ VF ++ V TW MI A + G +A
Sbjct: 535 LLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKA 594
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
L + M +G PD F +I AC S +++G +K + D ++ + ++
Sbjct: 595 LETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFE-KMKTHYKIDPMIEHYACVV 653
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + + + M ++ S W +++ SGD++ A
Sbjct: 654 DLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETA 697
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K+I+ GL +D + ++D+ G D A + +I V +WN ++ +++ S +
Sbjct: 519 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 578
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M+ G +PD FTF V+ C IE GK++HG +K D ++ STL+D
Sbjct: 579 AQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVD 638
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCGD+ +F+K+ R VSW MI G A G
Sbjct: 639 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 675
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G D + +LDL YGK A L+F ++ +WN +I AL +G
Sbjct: 420 IKSGFDVDICVNNAVLDL---YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 476
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+L +N M+ G +PD FT+ V+KAC A ++E G VH +K+G D FV ST++
Sbjct: 477 DTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVV 536
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG +D +K+ D++ + VVSW ++SG + + + + A
Sbjct: 537 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEA 579
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + +L S G A+ +F + P V +WN ++ G +++ L+ M
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PD+ TF ++K+C A + G +VH LAVK G D+ S L+D+Y KC +D
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243
Query: 132 GGRKMFDKMRVRSVVSWTTMISG 154
F M R+ VSW I+G
Sbjct: 244 DALCFFYGMPERNWVSWGAAIAG 266
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ S+D+++ ++D+ + A F + V T N M+ L G ++A+
Sbjct: 319 IKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAM 378
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ MI + R D + V AC + +G++VH LA+K+GF D+ V + ++DLY
Sbjct: 379 GLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLY 438
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
KC + +F M+ + VSW +I+ L +G D
Sbjct: 439 GKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 476
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL D VR L YGK D AL F + + +W I + +
Sbjct: 218 VKTGLEID---VRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 274
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L L+ M G + ++ ++C A + G+++H A+K FS D V + ++
Sbjct: 275 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIV 334
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K + R+ F + +V + M+ GL +G
Sbjct: 335 DVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 372
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + +D+ + L+D+ + G +LLVF ++ +WN MI + G ++
Sbjct: 620 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 679
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL ++ M P+ TF V++AC
Sbjct: 680 ALRMFERMQKENVVPNHATFVAVLRAC 706
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLA-------VKAGFSRDMFVQSTLMDLYLKCGD 129
P + TF V ++C + G+E V +GF FV + L+ +Y +C
Sbjct: 55 PARVTFSRVFQSCA-----QAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAG 109
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R++FD M R VSW TM++ + +GD+ A
Sbjct: 110 AACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 144
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I G D+ L KLL L + G D + ++F + + +WN MI G +
Sbjct: 116 QMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMIAGYVQKGLEEE 175
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L LY+ M +G PD++TF V +AC +EKGK+ H + +K+ ++ V S LMD
Sbjct: 176 GLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVMIKSQIKENVVVNSALMD 235
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC + G ++F+K R+V++WT +ISG G
Sbjct: 236 MYFKCSSLYDGHRVFNKSLNRNVITWTALISGYGQHG 272
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 38 QIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96
Q++ P + F + ++ L G ++A+ L+ G + + T+ +++ CI +
Sbjct: 52 QVQPPRNSFHLDETLKGLCFSGRVMEAV---GLLCRTGLQVEPATYALLLQECIFKKEFK 108
Query: 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G+ +H + G+ D ++++ L+ L+ K GD+D +FD + +S++SW MI+G
Sbjct: 109 TGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMIAGYV 168
Query: 157 ASG 159
G
Sbjct: 169 QKG 171
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF++ +V TW +I G + L+ ++ M GFRP+ TF VI AC
Sbjct: 249 VFNKSLNRNVITWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACSHGGL 308
Query: 95 IEKGKE 100
+ +G E
Sbjct: 309 VNEGWE 314
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ L +D ++ KL++ C+ T DHA +F QI + +N+M R S
Sbjct: 53 IKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPY 112
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L+ ++C+G PD +TF ++KAC +S A+ +G +H AVK G + ++++ TL+
Sbjct: 113 LAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLI 172
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y +C D++ R +FD+M +VS+ +I+G A S + A
Sbjct: 173 NMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEA 215
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL+++ + L+++ + + A VF ++ P + ++N +I +AL
Sbjct: 157 VKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEAL 216
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + + P T VI +C A++ GK +H K GF + + V + L+D++
Sbjct: 217 SLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMF 276
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG + +F+ MRVR +W+ MI A GD
Sbjct: 277 AKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGD 312
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 74/148 (50%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A+ +F +R W+ MI A G L+A+ ++ M G RPD
Sbjct: 272 LIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPD 331
Query: 79 KFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++ AC + +E+G+ + ++ G + + ++DL + G +D
Sbjct: 332 EITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFV 391
Query: 138 DKMRVRSV-VSWTTMISGLAASGDLDAA 164
DK+ +++ + W T++S + G+++ A
Sbjct: 392 DKLEIKATPILWRTLLSACSTHGNVEMA 419
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ L D L + + +D C+ G + +A +FS P + +N I+AL+ S + A
Sbjct: 47 MLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINA 106
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LY + +G RPD ++ P V+KA + A+E G+++H V + D+ V ++L+ +
Sbjct: 107 IWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQM 166
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y CG V RK+FD + + V W M++G G+L +A
Sbjct: 167 YSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSA 207
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A VF+++ +V +W +I +A+ L+ M PD+ V+
Sbjct: 202 GELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVL 261
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ +H K G R + + + L+D+Y K G++ ++F+ M+ +SV+
Sbjct: 262 SACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVI 321
Query: 147 SWTTMISGLAASG 159
+W+T+I+ LA G
Sbjct: 322 TWSTVIAALALHG 334
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++GL L L+D+ + G AL VF ++ V TW+ +I AL + G +A
Sbjct: 280 IEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEA 339
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
+ ++ M RP++ TF ++ AC
Sbjct: 340 IDMFLRMEKAKVRPNEVTFVAILSAC 365
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-ALLLYNL 69
N L ++L S + +A VF QI P+ F WN +IRA Q A+ LY+
Sbjct: 59 NTFFLYSRILHFSSLH-DLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHR 117
Query: 70 MICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ G DK TFPFV+KAC A+ +G+++H +K GF D+++ ++L+ Y C
Sbjct: 118 MLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCD 177
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D + +FD+M RS+VSW +I G+ DAA
Sbjct: 178 RLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G +D + L+ + + D A VF ++ + +WN++I A G
Sbjct: 153 QILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDA 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T + AC ++ G H +K A D+ + ++
Sbjct: 213 ALNLFGEMQ-KFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTS 271
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y KCG ++ ++F +M R V SW +MI G + G++ AA
Sbjct: 272 LVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAA 316
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND LL L+D+ G + AL +F ++ V +WN MI + G AL + M
Sbjct: 264 NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCM 323
Query: 71 I-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCG 128
+ P+ TF V+ AC + +G+ + V + ++ L+DL + G
Sbjct: 324 VRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAG 383
Query: 129 DVDGGRKMFDKMRVRS-VVSWTTMISG 154
+D + M +R +V W +++
Sbjct: 384 LIDEALDVVSNMPMRPDLVIWRSLLDA 410
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-ALLLYNL 69
N L ++L S + +A VF QI P+ F WN +IRA Q A+ LY+
Sbjct: 59 NTFFLYSRILHFSSLH-DLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHR 117
Query: 70 MICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ G DK TFPFV+KAC A+ +G+++H +K GF D+++ ++L+ Y C
Sbjct: 118 MLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCD 177
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D + +FD+M RS+VSW +I G+ DAA
Sbjct: 178 RLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G +D + L+ + + D A VF ++ + +WN++I A G
Sbjct: 153 QILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDA 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL L+ M F PD +T + AC + SL++ G D+ + ++L
Sbjct: 213 ALNLFGEMQ-KFFEPDGYTIQSIANACAGMGSLSL-------------GIVNDVLLNTSL 258
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KCG ++ ++F +M R V SW +MI G + G++ AA
Sbjct: 259 VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAA 302
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 3/148 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ ND LL L+D+ G + AL +F ++ V +WN MI + G AL +
Sbjct: 247 GIVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYF 306
Query: 68 NLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYL 125
M+ P+ TF V+ AC + +G+ + V + ++ L+DL
Sbjct: 307 GCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLA 366
Query: 126 KCGDVDGGRKMFDKMRVRS-VVSWTTMI 152
+ G +D + M +R +V W +++
Sbjct: 367 RAGLIDEALDVVSNMPMRPDLVIWRSLL 394
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSL 61
II GL + + KL+ + + + VF ++ P +V+ WN +IRALT +G
Sbjct: 39 IITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYLWNSIIRALTHNGLFS 97
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL LY+ +PD +TFP VI AC L E K +H + GF D+++ + L+
Sbjct: 98 EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALI 157
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y + D+D RK+F++M +R VVSW ++ISG A+G + A
Sbjct: 158 DMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D + L+D+ + D A VF ++ V +WN +I +G +
Sbjct: 140 RVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE 199
Query: 63 ALLLYN------LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
AL +Y + + N F+PD T +++AC +E GK VH + +G+ D
Sbjct: 200 ALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 259
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+ L+++Y KCG++ +++F M+ + VSW +MI+ +G +
Sbjct: 260 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKM 304
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK +L VF ++ + TWN +I + L + + M G PD T ++
Sbjct: 302 GKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSIL 361
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C A +GKE+HG K G D+ V + L+++Y KCG + ++F M+ + VV
Sbjct: 362 PVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 421
Query: 147 SWTTMISGLAASGD 160
+WT +IS G+
Sbjct: 422 TWTALISACGMYGE 435
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL +D + L+++ S G ++ VF ++ V TW +I A + G +A
Sbjct: 380 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 439
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ + M G PD F +I AC S +E+G H + + + ++D
Sbjct: 440 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 499
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + +D M ++ S W ++S SGD + A
Sbjct: 500 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIA 542
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSL 61
II GL + + KL+ + + + VF ++ P +V+ WN +IRALT +G
Sbjct: 39 IITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RLASPSNNVYLWNSIIRALTHNGLFS 97
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL LY+ +PD +TFP VI AC L E K +H + GF D+++ + L+
Sbjct: 98 EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALI 157
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y + D+D RK+F++M +R VVSW ++ISG A+G + A
Sbjct: 158 DMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D + L+D+ + D A VF ++ V +WN +I +G +
Sbjct: 140 RVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE 199
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +Y G PD +T V++AC ++E+G +HGL K G +D+ V + L+
Sbjct: 200 ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 259
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K + GR++FDKM +R VSW TMI G + G
Sbjct: 260 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 296
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VFS ++C +WN MI +GS +A+ L+ +M + +PD T+ ++
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGD 431
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ GKE+H K GF+ ++ V +TL+D+Y KCG++ K+F+ M+ R +++W T+I+
Sbjct: 432 LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 491
Query: 155 LAASGDLD 162
S D +
Sbjct: 492 CVHSEDCN 499
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 77/155 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G +++ ++ L+D+ + G+ +L VF ++ + TWN +I + L
Sbjct: 444 KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR 503
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ + M G PD T ++ C A +GKE+HG K G D+ V + L+++Y
Sbjct: 504 MISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYS 563
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG + ++F M+ + VV+WT +IS G+
Sbjct: 564 KCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGE 598
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDL-CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I + G+ D ++ LL + C F G D +F ++ +WN MI + G +
Sbjct: 242 IEKIGIKKDVIVNNGLLSMYCKFNGLID-GRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 300
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++ L+ M+ N F+PD T +++AC +E GK VH + +G+ D + L++
Sbjct: 301 SIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 359
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG++ +++F M+ + VSW +MI+ +G D A
Sbjct: 360 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEA 401
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL +D + L+++ S G ++ VF ++ V TW +I A + G +A
Sbjct: 543 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 602
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ + M G PD F +I AC S +E+G H + + + ++D
Sbjct: 603 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 662
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + +D M ++ S W ++S SGD + A
Sbjct: 663 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIA 705
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 102/167 (61%), Gaps = 5/167 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ L N Q V +L+ CS G + D+A VFS+I+ P+ F + +I+ + +
Sbjct: 28 QMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSN 87
Query: 60 SLQALLLYNLMI-CNGFRPD-KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+++L+LY M+ C + +F+ P V+KAC LA ++G++VHG +K D FV
Sbjct: 88 PVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG 147
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++ +Y+ G+++ R++FD+M R VVSW +MI+G +G+++ A
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A VF + V TW MI A + ++AL L+ M+ G RPD V+
Sbjct: 189 GEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVL 248
Query: 87 KACIASLA-IEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVR 143
A IA L +E+GK +H F+ S L+D+Y KCG ++ +F + R
Sbjct: 249 SA-IADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRR 307
Query: 144 SVVSWTTMISGLAASG 159
++ W +MISGLA G
Sbjct: 308 NIGDWNSMISGLAIHG 323
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L+D+ S G ++A VF I ++ WN MI L I G + +AL ++ M P
Sbjct: 283 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 342
Query: 78 DKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
++ TF ++ C +E+G+ + K + ++DL+ + G ++ +
Sbjct: 343 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 402
Query: 137 FDKMRVRS-VVSWTTMISGLAASGDLD 162
M + +++W ++S G ++
Sbjct: 403 IQNMPFEADLLAWKAILSASMKHGHIE 429
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR L D + KL+ S +T+ AL VF+Q++ P+V N +IRA ++ Q
Sbjct: 41 QIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQ 100
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A +++ M G D FT+PF++KAC + K +H K G S D++V + L+D
Sbjct: 101 AFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALID 160
Query: 123 LYLKCG--DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG V K+F+KM R VSW +M+ GL +G+L A
Sbjct: 161 CYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 27 GKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G + A ++F ++ P +V TW ++I G +A L + M+ +G R D
Sbjct: 261 GDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAIS 320
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ AC S + G H + K+ + + V + L+D+Y KCG + +F+ M +
Sbjct: 321 ILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKD 380
Query: 145 VVSWTTMISGLAASG 159
+VSW TM+ GL G
Sbjct: 381 LVSWNTMLHGLGVHG 395
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ +T++D Y +C ++ ++F+KM R+ VSW+TM+ G + +GD++ A
Sbjct: 214 RDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 14/169 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + L+++ ++ LLD+ + G A VF+ + + +WN M+ L + G +A
Sbjct: 341 IKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEA 400
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
+ L++ M G PDK TF V+ +C + I++G ++V+ L K
Sbjct: 401 IELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEH------ 454
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L+DL + G + K+ M + +VV W ++ ++D A
Sbjct: 455 YGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I + GLS+D + L+D C G D A+ +F ++ +WN M+ L G
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRD-AMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A L++ M + D ++ ++ + + E+ + R+ ST+
Sbjct: 202 RDARKLFDEMP----QRDLISWNTMLDGYARCREMSRAFEL----FEKMPERNTVSWSTM 253
Query: 121 MDLYLKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASGDLDAA 164
+ Y K GD++ R MFDKM ++VV+WT +I+G A G L A
Sbjct: 254 VMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEA 299
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 5/158 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ + + L+ K ++L F +++ +FS P+ +++N MIR LT + +
Sbjct: 59 QMLLHSVEKPNFLIPKAVELGDF----NYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHE 114
Query: 63 ALL-LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L LY M +G +PDKFT+ FV AC I G+ VH K G RD+ + +L+
Sbjct: 115 AALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLI 174
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V RK+FD++ R VSW +MISG + +G
Sbjct: 175 MMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAG 212
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK D A VF+Q+ W MI + +G S +A L+ M G PD
Sbjct: 274 LISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPD 333
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V+ AC + A+E GK++ A + +++V + L+D+Y KCG V+ ++F+
Sbjct: 334 AGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFE 393
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M V++ +W MI+ A G A
Sbjct: 394 AMPVKNEATWNAMITAYAHQGHAKEA 419
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+ + + G+ +A +F +I +WN MI + G + A
Sbjct: 158 LFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDA 217
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M GF PD+ T ++ AC + G+ + +A+ F+ S L+ +
Sbjct: 218 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISM 277
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+D R++F++M + V+WT MI+ + +G A
Sbjct: 278 YGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEA 318
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L ++ + L+D+ G+ + AL VF + + TWN MI A G + +ALLL++
Sbjct: 365 LQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFD 424
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M P TF V+ AC+ + + +G + H ++ G + + ++DL +
Sbjct: 425 RM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRA 481
Query: 128 GDVDGGRKMFDK 139
G +D + ++
Sbjct: 482 GMLDEAWEFMER 493
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G ND + L+D+ + G A +F +I+ + TWN MI + +G S++A
Sbjct: 430 IIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEA 488
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M N + DK TF VI+AC +EKGK VH + G +D ++ + L D+
Sbjct: 489 ITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDM 548
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG++ +FD+M RS+VSW+ MI+G G ++A
Sbjct: 549 YSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINAT 589
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L + G VF I+ + +WN +I T +G +ALLL+ M G PD
Sbjct: 344 LMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 403
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ + AC + G ++HG +K G D FVQ+ L+D+Y KCG V KMF+
Sbjct: 404 SYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFE 462
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K++ +S+V+W +MI G + +G
Sbjct: 463 KIKEKSLVTWNSMICGFSQNG 483
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL KL++ + G + + VF P F W ++I+ G +A+ LY
Sbjct: 28 GLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLY 87
Query: 68 NLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M+ + + F FP V+KAC + G +VHG +K GF D V+++L+ +Y +
Sbjct: 88 HEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGE 147
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D K FD M +R VV+W++++ +G
Sbjct: 148 MSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNG 180
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G +D ++ LL + D A F + V W+ ++ +G + +
Sbjct: 125 RVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASE 184
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L +++ MI PD T V +AC ++ G+ VHG V+ + + ++L+
Sbjct: 185 GLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIV 244
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K GD+ ++F+ + R WT MIS SG A
Sbjct: 245 MYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEA 286
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + ++ L L+ + G A +F + C W MI G +A
Sbjct: 227 VVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEA 286
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM-FVQSTLMD 122
L ++ M P++ T V+ AC +++G+ VHG ++ ++ F+ LM+
Sbjct: 287 LNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALME 346
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY G++ K+F+ ++ ++++SW T+IS +G + A
Sbjct: 347 LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEA 388
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
K+I YGL D L L D+ S G+ A VF ++ + +W++MI + G
Sbjct: 528 HKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQIN 587
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L+N M+ +G +P+ TF ++ AC + A+E+GK + G + ++
Sbjct: 588 ATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMV 647
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
DL + GD++G ++ + + S W +++G
Sbjct: 648 DLLSRAGDLNGAYQIITSLPFPANSSIWGALLNG 681
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 5/158 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ + + L+ K ++L F +++ +FS P+ +++N MIR LT + +
Sbjct: 55 QMLLHSVEKPNFLIPKAVELGDF----NYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHE 110
Query: 63 ALL-LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L LY M +G +PDKFT+ FV AC I G+ VH K G RD+ + +L+
Sbjct: 111 AALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLI 170
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V RK+FD++ R VSW +MISG + +G
Sbjct: 171 MMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAG 208
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK D A VF+Q+ W MI + +G S +A L+ M G PD
Sbjct: 270 LISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPD 329
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V+ AC + A+E GK++ A + +++V + L+D+Y KCG V+ ++F+
Sbjct: 330 AGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFE 389
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M V++ +W MI+ A G A
Sbjct: 390 AMPVKNEATWNAMITAYAHQGHAKEA 415
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+ + + G+ +A +F +I +WN MI + G + A
Sbjct: 154 LFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDA 213
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M GF PD+ T ++ AC + G+ + +A+ F+ S L+ +
Sbjct: 214 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISM 273
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+D R++F++M + V+WT MI+ + +G A
Sbjct: 274 YGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEA 314
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L ++ + L+D+ G+ + AL VF + + TWN MI A G + +ALLL++
Sbjct: 361 LQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFD 420
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M P TF V+ AC+ + + +G + H ++ G + + ++DL +
Sbjct: 421 RM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRA 477
Query: 128 GDVDGGRKMFDK 139
G +D + ++
Sbjct: 478 GMLDEAWEFMER 489
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF QI P F WN++IR L + A+ Y G PD TFPF++KAC A
Sbjct: 43 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 102
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ +G+++H K G D+FV ++L+ LY CG++ R +FD+M V+ VVSW ++I G
Sbjct: 103 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 162
Query: 155 LA 156
+
Sbjct: 163 YS 164
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F QI + +W+ MI + AL ++ M +PD V+ +C A
Sbjct: 276 IFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGA 335
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ GK VH + D ++++L+D+Y+KCG ++F +M+ + +SW ++I G
Sbjct: 336 LDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 395
Query: 155 LAASG 159
LA +G
Sbjct: 396 LANNG 400
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + R + D ++ L+D+ G AL VF +++ +WN +I L +G
Sbjct: 344 EYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEK 403
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQST 119
++L L+ M+ GFRP+ TF V+ AC + +E+G + H ++K +S + M
Sbjct: 404 ESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLEPQMKHYGC 462
Query: 120 LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
++DL + G ++ + +M + V W ++ GD+ A
Sbjct: 463 VVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIA 508
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL +D + L+ L + G +A VF ++ V +WN +I +
Sbjct: 113 ITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDI 172
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIA----SLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L L+ LM G + DK T V+ AC S+A + + ++ D+++ +T
Sbjct: 173 LALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV----DVYLGNT 228
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D + + G + K+F M+VR++V+ MI+ A D+ +A
Sbjct: 229 LVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSA 273
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ I+ GL+ + +L +++ C YG +A +F +I P++F WN MIR +
Sbjct: 61 QAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFP 120
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ LY M+ G +PD++TFPF+ K +A+E G+++HG +K G ++FV + L
Sbjct: 121 QLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTAL 180
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +YL CG +D R +FD V++W +IS G + +
Sbjct: 181 VQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEES 224
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A F ++ +W MI +AL L+ M +PD+FT V+
Sbjct: 320 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 379
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ + + D+FV++ L+D+Y KCGDVD +F +M R
Sbjct: 380 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 439
Query: 147 SWTTMISGLAASGDLDAA 164
+WT MI GLA +G + A
Sbjct: 440 TWTAMIVGLAVNGHGEKA 457
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++++GL + + L+ + G+ D A VF V TWN++I A G ++
Sbjct: 165 VLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEES 224
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ +M P T V+ AC + GK+VH ++ +++ ++D+
Sbjct: 225 RRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDM 284
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y CG++D +F M R ++SWTT++SG G++D A
Sbjct: 285 YADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 325
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R + ND + L+D+ G D A +F ++ FTW MI L ++G +A
Sbjct: 398 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 457
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMD 122
L +++ M+ PD+ T+ V+ AC + ++KG++ + + G ++ L+D
Sbjct: 458 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 517
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G + ++ + M ++ + + W +++G + D A
Sbjct: 518 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 560
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G ND + L+D+ + G A +F +I+ + TWN MI + +G S++A
Sbjct: 627 IIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEA 685
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M N + DK TF VI+AC +EKGK VH + G +D ++ + L D+
Sbjct: 686 ITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDM 745
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG++ +FD+M RS+VSW+ MI+G G ++A
Sbjct: 746 YSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINAT 786
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L + G VF I+ + +WN +I T +G +ALLL+ M G PD
Sbjct: 541 LMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 600
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ + AC + G ++HG +K G D FVQ+ L+D+Y KCG V KMF+
Sbjct: 601 SYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFE 659
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K++ +S+V+W +MI G + +G
Sbjct: 660 KIKEKSLVTWNSMICGFSQNG 680
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
K+I YGL D L L D+ S G+ A VF ++ + +W++MI + G
Sbjct: 725 HKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQIN 784
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L+N M+ +G +P+ TF ++ AC + A+E+GK + G + ++
Sbjct: 785 ATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMV 844
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
DL + GD++G ++ + + S W +++G
Sbjct: 845 DLLSRAGDLNGAYQIITSLPFPANSSIWGALLNG 878
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC--IASLA------IEKGKEVHGLAVKA 108
+G + + L +++ MI PD T V +AC + SL +++G+ VHG ++
Sbjct: 469 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRR 528
Query: 109 GFSRDM-FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ F+ LM+LY G++ K+F+ ++ ++++SW T+IS +G + A
Sbjct: 529 AMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEA 585
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I+ GLS + LL KL+ + H+ LVF ++ +VF WN +I +
Sbjct: 47 SRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYN 106
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A L+N M + PD FT + K A+ GK +HG +++ GF D V +++M
Sbjct: 107 EAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIM 166
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y KCG+ + RK+FD+M +R+ SW +I+G A SG+L
Sbjct: 167 SMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNL 206
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASL 93
VF +++C +VF+W MI +G S +AL L+ ++ + +G P++ + V+ AC +
Sbjct: 212 VFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFS 271
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF-DKMRVRSVVSWTTMI 152
+ G+++HG AV+ + ++ + + L+D+Y KCG +D R++F D + +SW++MI
Sbjct: 272 GLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMI 331
Query: 153 SGLAASG 159
SG G
Sbjct: 332 SGYGLHG 338
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQA 63
+R L+N+ L L+D+ S G D A VF C +W+ MI + G +A
Sbjct: 284 VRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEA 343
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
+LLY+ M+ G RPD T ++ AC S + +G ++ + G + + + ++D
Sbjct: 344 ILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVD 403
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ + G +D M V S W ++S GDL+
Sbjct: 404 MLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLE 444
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 25 FYGK----TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF 80
YGK TD AL+VF I +VF+W +M+ A + +G +AL L+ M G RPDK
Sbjct: 1 MYGKCARVTD-ALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKV 59
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
F + AC AS ++ G+++H V +G + ++ + ++L+++Y KC DV K+FD M
Sbjct: 60 VFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119
Query: 141 RVRSVVSWTTMISGLAASG 159
+R VVSWT M++ A +G
Sbjct: 120 LLRDVVSWTAMLAVYAQNG 138
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+II GL D +L L+ + G D VFS++ V W MI + +G
Sbjct: 183 HRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYE 242
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ LL++ M G + ++ T+ +++ C A+++G+ + +++ F + ++L+
Sbjct: 243 EGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLI 302
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
LY +CG +D + + + M R VV+W M++ A +GD
Sbjct: 303 SLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGD 341
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++ GL+++ ++ L+++ YGK A VF + V +W M+ +G
Sbjct: 84 VVGSGLTSNIIISNSLVNM---YGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCW 140
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
QAL + M G +P++ TF ++ C ++ G+++H + G D + + L
Sbjct: 141 SQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNAL 200
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+ +Y CG D + +F +M SV+ WTTMI+G + +G +
Sbjct: 201 VHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYE 242
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ + LL L+ L G D A + + V WN M+ A +G + +
Sbjct: 285 RILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWE 344
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLM 121
A+ L M GF +K T+ V++AC A+ +G+E+H + G R++ V ++++
Sbjct: 345 AIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVI 404
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+Y KCG + +F+ M + VSW +I+
Sbjct: 405 TMYGKCGQTEAAMSVFEAMPRKDDVSWNAVIN 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 35 VFSQIRCPHVFTWNLMIRAL--TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
F + + W++++ A + DG +A + M G +P + TF + AC A
Sbjct: 521 AFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAM 580
Query: 93 LAIEKGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+E G+ +H A +GF + + +T++++Y KCG + +FD+M + ++SW ++
Sbjct: 581 ATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSL 640
Query: 152 ISGLAASG 159
I A +G
Sbjct: 641 IVAYAHNG 648
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+T+ A+ VF + +WN +I A + AL L++ M G R ++FT ++
Sbjct: 411 GQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLL 470
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+AC ++ +++H A GF + V ++++++Y +CG + +K FD + + +
Sbjct: 471 EACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGL 530
Query: 146 VSWTTMISGLAASGD 160
V+W+ +++ A S D
Sbjct: 531 VAWSIILAAYAQSKD 545
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A LVF Q+ + +WN +I A +G +L+AL M+ GF PD T ++
Sbjct: 617 GSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSIL 676
Query: 87 KACIASLAIEKGKEV-------HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF-- 137
+ +E+G E HGL +G + L+DL + G +D ++
Sbjct: 677 YGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLK------CLVDLLARKGFLDAAEELILA 730
Query: 138 DKMRVRSVVSWTTMISGLAASGD 160
++W T+++ + GD
Sbjct: 731 SPACQADTIAWMTLLAACKSYGD 753
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ I+ GL+ + +L +++ C YG +A +F +I P++F WN MIR +
Sbjct: 40 QAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFP 99
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ LY M+ G +PD++TFPF+ K +A+E G+++HG +K G ++FV + L
Sbjct: 100 QLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTAL 159
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +YL CG +D R +FD V++W +IS G + +
Sbjct: 160 VQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEES 203
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A F ++ +W MI +AL L+ M +PD+FT V+
Sbjct: 299 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 358
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ + + D+FV++ L+D+Y KCGDVD +F +M R
Sbjct: 359 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 418
Query: 147 SWTTMISGLAASGDLDAA 164
+WT MI GLA +G + A
Sbjct: 419 TWTAMIVGLAVNGHGEKA 436
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++++GL + + L+ + G+ D A VF V TWN++I A G ++
Sbjct: 144 VLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEES 203
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ +M P T V+ AC + GK+VH ++ +++ ++D+
Sbjct: 204 RRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDM 263
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y CG++D +F M R ++SWTT++SG G++D A
Sbjct: 264 YADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 304
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R + ND + L+D+ G D A +F ++ FTW MI L ++G +A
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 436
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMD 122
L +++ M+ PD+ T+ V+ AC + ++KG++ + + G ++ L+D
Sbjct: 437 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 496
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
L + G + ++ + M +++ + W +++G + D A
Sbjct: 497 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 539
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I L +D +LLD S KT ++A LVF+QI P+ F N M++ T +
Sbjct: 33 QLITTNLISDTFAASRLLD--SVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESST 90
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL Y M G D +T+PFV+KAC A + +G V G AVK GF D+FV +
Sbjct: 91 PERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNG 150
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y +CG+ R +FD + +VSW +M+ G G+++ A
Sbjct: 151 LISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENA 195
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 80/141 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
++D + G+ + A +F ++ +V +W++MI S +AL L+ M+C G +PD
Sbjct: 245 MIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPD 304
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + + AC A+++G+ +H + D+ VQ+ L+D+YLKCG D R++F+
Sbjct: 305 RVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFN 364
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M R+VVSW MI GL +G
Sbjct: 365 SMPERNVVSWNVMIVGLGMNG 385
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ G D +V L+ + G+T A VF + +WN M+ G
Sbjct: 135 EAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMEN 194
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV--KAGFSRDMFVQSTL 120
A +++ M P++ + I I + G EV+ V + +RD+ +++
Sbjct: 195 AQNMFDEM------PERDVVSWSI--MIDGYGKKMG-EVNRARVFFDSMPTRDLVSWNSM 245
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D Y K G+++ R++FDKM ++V+SW+ MI G A D A
Sbjct: 246 IDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEA 289
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 102/167 (61%), Gaps = 5/167 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ L N Q V +L+ CS G + D+A VFS+I+ P+ F + +I+ + +
Sbjct: 28 QMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSN 87
Query: 60 SLQALLLYNLMI-CNGFRPD-KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+++L+LY M+ C + +F+ P V+KAC LA ++G++VHG +K D FV
Sbjct: 88 PVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG 147
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++ +Y+ G+++ R++FD+M R VVSW +MI+G +G+++ A
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN------ 68
+VR +D +G+ + A VF ++ V +WN MI G A L++
Sbjct: 150 MVRMYID----FGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERD 205
Query: 69 LMICN-------------GFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFS-RD 113
L+ CN G RPD V+ A IA L +E+GK +H
Sbjct: 206 LVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSA-IADLGFVEEGKWLHAYVSMNKIELSS 264
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159
F+ S L+D+Y KCG ++ +F + R++ W +MISGLA G
Sbjct: 265 GFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHG 311
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L+D+ S G ++A VF I ++ WN MI L I G + +AL ++ M P
Sbjct: 271 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 330
Query: 78 DKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
++ TF ++ C +E+G+ + K + ++DL+ + G ++ +
Sbjct: 331 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 390
Query: 137 FDKMRVRS-VVSWTTMISGLAASGDLD 162
M + +++W ++S G ++
Sbjct: 391 IQNMPFEADLLAWKAILSASMKHGHIE 417
>gi|242095158|ref|XP_002438069.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
gi|241916292|gb|EER89436.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
Length = 563
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L KL+ S +G A VF + V +W M+ +G + +AL L+ LM+ +G
Sbjct: 53 LSTKLVMFYSHFGDVAAARAVFDGMPHRSVVSWTAMVSGYAKNGRAPEALELFALMLRSG 112
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RP++FTF +AC G++VH A K + DMFVQS LMD++L+CG V R
Sbjct: 113 ARPNQFTFGSAARACAGGRCARSGEQVHACAAKGRHAGDMFVQSALMDMHLRCGSVGDAR 172
Query: 135 KMFDKMRVRSVVSWTTMISGLAASG 159
++F +M + +VSW ++ G G
Sbjct: 173 RLFAEMERKDLVSWNALMRGFVERG 197
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+ D + L+D+ G A +F+++ + +WN ++R G AL L+
Sbjct: 149 AGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNALMRGFVERGHYSDALGLFAS 208
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ +G PD FTF +KAC A I + +H +K G+ + ++L+D Y KC
Sbjct: 209 MLRDGMLPDHFTFGSALKACGAISVIFNVELIHTCIIKLGYWDEKVATASLIDSYAKCRS 268
Query: 130 VDGGRKMFDKMRVRSVVSWTTMIS 153
+ R ++D + +VS T +IS
Sbjct: 269 LSSARVIYDSICEPDLVSSTALIS 292
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQ 62
II+ G ++++ L+D + A +++ I P + + +I ++D + S
Sbjct: 244 IIKLGYWDEKVATASLIDSYAKCRSLSSARVIYDSICEPDLVSSTALISDHSMDRNYSED 303
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ + G R D ++ C +I+ G ++H K D+ + + L+D
Sbjct: 304 AMKLFCKIHREGLRIDGILLSALLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVD 363
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G+ R+ FD+M R+V+SWT++I+ A G
Sbjct: 364 MYAKSGEYLDSRRAFDEMPSRNVISWTSLITACAQHG 400
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-----MFVQSTLMDL 123
+ + N + + ++++CI + A +GK VH A+ S + + + L+
Sbjct: 1 MSLVNAPKSAAALYSSLLQSCIGANAFRQGKSVHHRAIITASSDPSPPDLLHLSTKLVMF 60
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y GDV R +FD M RSVVSWT M+SG A +G
Sbjct: 61 YSHFGDVAAARAVFDGMPHRSVVSWTAMVSGYAKNG 96
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G+ + F ++ +V +W +I A G A+ L+ M
Sbjct: 354 DLALDNALVDMYAKSGEYLDSRRAFDEMPSRNVISWTSLITACAQHGFGEDAVTLFARME 413
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKE 100
+G +P+ TF ++ AC S + KG E
Sbjct: 414 EDGVKPNDVTFLSLLSACSHSGMMNKGME 442
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G+S D+ + KLL + D ++ + + P F WN +IRA + + ++
Sbjct: 40 GISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSIT 99
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M+ NG PD T+PF++KA L E G VH VK+G D F+Q++L+ +Y
Sbjct: 100 VFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYA 159
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
C D+ RK+FD+M +++V+W M+ G A GDL+ A
Sbjct: 160 SCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMA 198
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+LD + G + A VF+ + V +W+ +I +A+ L+ M +G +
Sbjct: 185 MLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMAN 244
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T + AC A+E G+ +H V+ + +Q++L+D+Y KCG + +F
Sbjct: 245 EVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFR 304
Query: 139 KMRVRS--VVSWTTMISGLAASGDLDAA 164
++ V+ W +I GLA G + A
Sbjct: 305 ACSLQEADVLIWNAIIGGLATHGLIKEA 332
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 6 RYGLSNDQ----LLVRKLLDLCSFYGKTDHALLVFS--QIRCPHVFTWNLMIRALTIDGS 59
RY + N+ +L L+D+ + G AL VF ++ V WN +I L G
Sbjct: 269 RYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGL 328
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A+ L+ M G PD+ T+ ++ C +E+ K G + +
Sbjct: 329 IKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEHYAC 388
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWT-TMISGLAASGDLDAA 164
++D + G V + +M V+ S ++SG G LD A
Sbjct: 389 MVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIA 434
>gi|383167277|gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167278|gb|AFG66681.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167279|gb|AFG66682.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167280|gb|AFG66683.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
Length = 150
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V WN MI A + +AL L++ M +G R D FTF V+ C +E+GKE+H
Sbjct: 2 VVLWNAMITAYAKNEPVEEALKLFHEMKLSGIRADHFTFASVLPVCGNLGNLEQGKEIHH 61
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
++G+ D++V S L+D+Y+KCG V+ R++FDKM R V+SW +MI G A G +
Sbjct: 62 EINRSGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMPRRDVISWNSMIGGYATHGPPEE 121
Query: 164 A 164
A
Sbjct: 122 A 122
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I R G +D + L+D+ G + A VF ++ V +WN MI G
Sbjct: 61 HEINRSGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMPRRDVISWNSMIGGYATHGPPE 120
Query: 62 QALLLYNLMICNG--FRPDKFTFPFVIKAC 89
+AL L+ M +P+ FT+ +I AC
Sbjct: 121 EALRLFRRMKDEAAEVQPNLFTYASIIPAC 150
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 8 GLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G +D +R+LL + G HA LVF QI P F +N +IR + A+
Sbjct: 5 GFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVS 64
Query: 66 LYNLMICNG----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LY M+ G RPDK TFPFV++AC A A + G +VH VKAG D FV++ L+
Sbjct: 65 LYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALI 124
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ CG++ +FD V+W+ MI+G A GD+ AA
Sbjct: 125 GMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 167
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 4/133 (3%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +F Q+ V +WN+MI GS L AL L+ M G +PD T ++ AC
Sbjct: 198 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACAD 257
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMF---VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
S ++ G+ +H ++ FSR+ F + + L+D+Y KCG + ++F MR + V +W
Sbjct: 258 SGDLDVGQRLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTW 316
Query: 149 TTMISGLAASGDL 161
+++ GLA G +
Sbjct: 317 NSIVGGLALHGHV 329
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A VF +R V TWN ++ L + G L+++ ++ M+
Sbjct: 283 VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKG 342
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
RPD+ TF V+ AC ++KG+E L K ++ ++D+ + G +
Sbjct: 343 KVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKE 402
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ D M+ + V W T++S G+++ A
Sbjct: 403 AFEFIDTMKCEPNSVIWRTLLSACRVHGEIELA 435
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 73/136 (53%)
Query: 29 TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88
T +A+ +F+QI P F WN IR + + A+ LY M +PD FTFP V+KA
Sbjct: 57 TQYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKA 116
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C + G VHG + GF ++ V++TL+ + KCGD+ +FD VV+W
Sbjct: 117 CTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAW 176
Query: 149 TTMISGLAASGDLDAA 164
+ +I+G A GDL A
Sbjct: 177 SALIAGYAQRGDLSVA 192
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ + A +F + V +WN M+ + + +AL L++ M G PD+ T +
Sbjct: 217 HGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSL 276
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+ AC A L + G++VH ++ + + + L+D+Y KCG++ G +F +R +
Sbjct: 277 LSAC-ADLG-DXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKD 334
Query: 145 VVSWTTMISGLAASGDLDAA 164
+VSW ++I GLA G + +
Sbjct: 335 MVSWNSVIGGLAFHGHAEES 354
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
LL L+D+ + G + VF IR + +WN +I L G + ++L L+ M
Sbjct: 305 LLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRT 364
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
PD+ TF V+ AC + +++G + + K ++ ++D+ + G +
Sbjct: 365 KVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKE 424
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
M++ + + W +++ GD++ A
Sbjct: 425 AFDFIASMKIEPNAIVWRSLLGACKVHGDVELA 457
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ GL+ D ++L C S G ++A LVF QI+ P++F WN +IR +
Sbjct: 44 QLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQ 103
Query: 62 QALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++ LY ++++ + +P + T+P V KA +G ++HG +K G D F+++T+
Sbjct: 104 NSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTI 163
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+ CG RK+FD+ +V+W TMI G+A G +D +
Sbjct: 164 LFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDES 207
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D + +F ++ + +WN MI +G AL L+ M P +FT ++
Sbjct: 202 GLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLL 261
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC AI +G+ +H VK F + V + ++D+Y KCG +D ++F R +
Sbjct: 262 NACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLS 321
Query: 147 SWTTMISGLAASGDLDAA 164
W +MI GLA +G + A
Sbjct: 322 CWNSMILGLAMNGQENEA 339
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 10/159 (6%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ ++V ++D+ S G D A+ VF + WN MI L ++G +AL L++++
Sbjct: 288 NPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQ 347
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL-----AVKAGFSRDMFVQSTLMDLYLK 126
+ RPD +F V+ AC + ++K K+ L +K G S ++D+ +
Sbjct: 348 SSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKH----FSCMVDVLGR 403
Query: 127 CGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
G ++ ++ M V + W +++ G++ A
Sbjct: 404 AGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMA 442
>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
Length = 449
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S++ +L LL++ G + A VF + P F+W MI A T + L+AL L++
Sbjct: 8 SSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHR 67
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M G P T V+ AC S A++ GK++H +GF + Q+ L+D+Y KCG
Sbjct: 68 MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGS 127
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ K+F M R+ VSWT MI+ LA G D A
Sbjct: 128 LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEA 162
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + L LLD+ + G + + VF+ + + +W MI AL G +AL L+
Sbjct: 107 GFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELF 166
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLYLK 126
M G D TF V++AC + I++ E H + + +D +
Sbjct: 167 KEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGR 226
Query: 127 CGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
G + ++ M V+W T+++
Sbjct: 227 AGRLQDAEELIHSMPFHPETVTWKTLLNA 255
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 86/150 (57%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D+ + L+++ S G D A ++F Q+ V TWN MI L+ +G S +A+ L++LM
Sbjct: 436 DEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMY 495
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+ F VI+AC +EKGK +H + G + +F+++ L+D+Y KCGD+
Sbjct: 496 VTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQ 555
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+++FD M RSVVSW+++IS G +
Sbjct: 556 TAQRVFDNMSERSVVSWSSLISSYGVHGQI 585
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 89/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II L ND L KL++ S G + VF P F W +++++ +G +A
Sbjct: 24 IIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGCYQEA 83
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LY+ M+ + + +TFP V++AC + G+ VHG +K+GF D V + L+ +
Sbjct: 84 ISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLSV 143
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y + G +D RK+F +M +R +VSW+++IS + +G+++
Sbjct: 144 YGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEG 184
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G D ++ LL + G D A VF ++ + +W+ +I ++ +G +
Sbjct: 124 RIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINE 183
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + M+ G PD V++AC + K HG +K G D FV S+L+
Sbjct: 184 GLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIF 243
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + +F+ + RS +WT MIS G L A
Sbjct: 244 MYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEA 285
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL+L + K D + +I + WN +I G + + L+ M GF PD
Sbjct: 343 LLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPD 402
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F+ + A ++ G ++HG +K F D +V ++L+++Y KCG VD +FD
Sbjct: 403 SFSLASSLSASGNEGELQLGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFD 461
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+M + VV+W +MISGL+ +G
Sbjct: 462 QMEPKGVVTWNSMISGLSQNG 482
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ ND+ + L+ + + G A +VF + TW MI + + G +A
Sbjct: 226 ILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEA 285
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM-FVQSTLMD 122
L L+ M P+ T ++++C + +GK VH + +K ++ + TL++
Sbjct: 286 LALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLE 345
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY D K+ ++ R + W T+IS A G
Sbjct: 346 LYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKG 382
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
K+I G+ + L+D+ + G A VF + V +W+ +I + + G
Sbjct: 527 HKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQIS 586
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAGFSRDMFVQ 117
+ + L++ M+ +G +P+ T V+ AC + +++G + ++ R+ FV
Sbjct: 587 EVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEP--KREHFV- 643
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++DL + GD+D ++ M S W +++G +D A
Sbjct: 644 -CIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIA 690
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 38/202 (18%)
Query: 1 MQKI----IRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRAL 54
+QKI ++ GL+ L V +L C S G ++A LVF+QI P++F+WN +IR
Sbjct: 40 LQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGF 99
Query: 55 TIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
+ + A+ L+ +++I + +P + T+P V KA G ++HG +K G D
Sbjct: 100 SQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFD 159
Query: 114 MFVQSTLMDLYL-------------------------------KCGDVDGGRKMFDKMRV 142
F+++T++ +Y KCG+VD RK+FD+M +
Sbjct: 160 PFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPL 219
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
R+ VSW +MISG +G L A
Sbjct: 220 RNTVSWNSMISGYVRNGRLREA 241
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 71/133 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D + +F ++ + +WN MI +G +AL L+ M +P +FT ++
Sbjct: 205 GEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLL 264
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A A+++G+ +H K F ++ V ++++D+Y KCG + ++F+ ++ +
Sbjct: 265 NASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLS 324
Query: 147 SWTTMISGLAASG 159
SW TMI GLA +G
Sbjct: 325 SWNTMILGLAMNG 337
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ ++D+ G A VF + +WN MI L ++G +A+ L++ + C+
Sbjct: 293 IVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECS 352
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDG 132
RPD TF V+ AC S ++K KE L K + S ++D + G ++
Sbjct: 353 NLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEE 412
Query: 133 GRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
++ M V + W++++S G+++ A
Sbjct: 413 AEELIRNMPVNPDAIIWSSLLSACRKHGNVELA 445
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 86/150 (57%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D+ + L+++ S G D A ++F Q+ V TWN MI L+ +G S +A+ L++LM
Sbjct: 436 DEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMY 495
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+ F VI+AC +EKGK +H + G + +F+++ L+D+Y KCGD+
Sbjct: 496 VTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQ 555
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+++FD M RSVVSW+++IS G +
Sbjct: 556 TAQRVFDNMSERSVVSWSSLISSYGVHGQI 585
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 89/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II L ND L KL++ S G + VF P F W +++++ +G +A
Sbjct: 24 IIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGCYQEA 83
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LY+ M+ + + +TFP V++AC + G+ VHG +K+GF D V + L+ +
Sbjct: 84 ISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLSV 143
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y + G +D RK+F +M +R +VSW+++IS + +G+++
Sbjct: 144 YGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEG 184
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G D ++ LL + G D A VF ++ + +W+ +I ++ +G +
Sbjct: 124 RIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINE 183
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + M+ G PD V++AC + K HG +K G D FV S+L+
Sbjct: 184 GLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIF 243
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + +F+ + RS +WT MIS G L A
Sbjct: 244 MYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEA 285
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL+L + K D + +I + WN +I G + + L+ M GF PD
Sbjct: 343 LLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPD 402
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F+ + A ++ G ++HG +K F D +V ++L+++Y KCG VD +FD
Sbjct: 403 SFSLASSLSASGNEGELQLGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFD 461
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+M + VV+W +MISGL+ +G
Sbjct: 462 QMEPKGVVTWNSMISGLSQNG 482
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ ND+ + L+ + + G A +VF + TW MI + + G +A
Sbjct: 226 ILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEA 285
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM-FVQSTLMD 122
L L+ M P+ T ++++C + +GK VH + +K ++ + TL++
Sbjct: 286 LALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLE 345
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY D K+ ++ R + W T+IS A G
Sbjct: 346 LYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKG 382
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
K+I G+ + L+D+ + G A VF + V +W+ +I + + G
Sbjct: 527 HKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQIS 586
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAGFSRDMFVQ 117
+ + L++ M+ +G +P+ T V+ AC + +++G + ++ R+ FV
Sbjct: 587 EVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEP--KREHFV- 643
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++DL + GD+D ++ M S W +++G +D A
Sbjct: 644 -CIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIA 690
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL L+ KL+ S +G A VF + P +F WN +IR + +
Sbjct: 43 RLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQD 102
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALL+Y+ M PD FTFP ++KAC ++ G+ VH + GF D+FVQ+ L+
Sbjct: 103 ALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIA 162
Query: 123 LYLKCGDVDGGRKMFDKMRV--RSVVSWTTMISGLAASGD 160
LY KC + R +F+ + + R++VSWT ++S A +G+
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + L+ L + + G+ A ++F +++ P++ WN MI +G + +A
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +++ MI RPD + I AC ++E+ + ++ ++ + D+F+ S L+D+
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ KCG V+G R +FD+ R VV W+ MI G G
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHG 403
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSS 60
++ R G D + L+ L + + A VF + P + +W ++ A +G
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++AL +++ M +PD V+ A +++G+ +H VK G + + +L
Sbjct: 204 MEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V + +FDKM+ +++ W MISG A +G
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R +D + L+D+ + G + A LVF + V W+ MI + G + +A+
Sbjct: 351 RSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAIS 410
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY M G P+ TF ++ AC S + +G L + + ++DL
Sbjct: 411 LYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLG 470
Query: 126 KCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
+ G +D ++ M V+ V+ W ++S
Sbjct: 471 RAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL L+ KL+ S +G A VF + P +F WN +IR + +
Sbjct: 43 RLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQD 102
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALL+Y+ M PD FTFP ++KAC ++ G+ VH + GF D+FVQ+ L+
Sbjct: 103 ALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIA 162
Query: 123 LYLKCGDVDGGRKMFDKMRV--RSVVSWTTMISGLAASGD 160
LY KC + R +F+ + + R++VSWT ++S A +G+
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + L+ L + + G+ A ++F +++ P++ WN MI +G + +A
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +++ MI RPD + I AC ++E+ + ++ ++ + D+F+ S L+D+
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ KCG V+G R +FD+ R VV W+ MI G G
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHG 403
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSS 60
++ R G D + L+ L + + A VF + P + +W ++ A +G
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++AL +++ M +PD V+ A +++G+ +H VK G + + +L
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V + +FDKM+ +++ W MISG A +G
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R +D + L+D+ + G + A LVF + V W+ MI + G + +A+
Sbjct: 351 RSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAIS 410
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY M G P+ TF ++ AC S + +G + + ++DL
Sbjct: 411 LYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLG 470
Query: 126 KCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
+ G +D ++ M V+ V+ W ++S
Sbjct: 471 RAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G +D + L+D+ + +TD+++ VF + WN M+ +GS +AL
Sbjct: 201 RNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALG 260
Query: 66 LYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M+ +G +P TF +I AC +ASL + GK++H ++ GF ++F+ S+L+D+
Sbjct: 261 LFRRMLHSGIKPMPVTFSSLIPACGNLASLLL--GKQLHAYVIRGGFDGNVFISSSLIDM 318
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+V R++FD+++ +VSWT MI G A G A
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 14/174 (8%)
Query: 5 IRYGLSNDQLLVRKLLDL-CSFYGKTDHALL-------------VFSQIRCPHVFTWNLM 50
+R G D+ LL+L C H+ VF ++ V +WN +
Sbjct: 85 LRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTL 144
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+ G +AL L M +G +PD FT V+ + +G E+HG A + GF
Sbjct: 145 VLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGF 204
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+FV S+L+D+Y C D K+FD + VR + W +M++G A +G +D A
Sbjct: 205 HDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + + L+D+ G A +F +I+ P + +W MI + G + +A
Sbjct: 300 VIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L+L++ M +P+ TF V+ AC + ++KG K + ++ G + + L D
Sbjct: 360 LVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALAD 419
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ G ++ M+++ S W+T++
Sbjct: 420 TLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK-------CGDVDGG 133
+ P +K+C A G +H LA+++G D F + L++LY K ++DG
Sbjct: 60 SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119
Query: 134 -------RKMFDKMRVRSVVSWTTMISGLAASG 159
RK+FD+M + VVSW T++ G A SG
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESG 152
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 102/167 (61%), Gaps = 5/167 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ L N Q V +L+ CS G + D+A VFS+I+ P+ F + +I+ + +
Sbjct: 28 QMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSN 87
Query: 60 SLQALLLYNLMI-CNGFRPD-KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+++L+LY M+ C + +F+ P V+KAC LA ++G++VHG +K D FV
Sbjct: 88 PVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG 147
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++ +Y+ G+++ R++FD+M R VVSW +MI+G +G+++ A
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A VF + V TW MI A + ++AL L+ M+ G RPD V+
Sbjct: 220 GRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVL 279
Query: 87 KACIASLA-IEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVR 143
A IA L +E+GK +H F+ S L+D+Y KCG ++ +F + R
Sbjct: 280 SA-IADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRR 338
Query: 144 SVVSWTTMISGLAASG 159
++ W +MISGLA G
Sbjct: 339 NIGDWNSMISGLAIHG 354
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
RD+ + ++D Y KCG + K+F+ M + VV+WT+MIS
Sbjct: 203 ERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISA 246
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L+D+ S G ++A VF I ++ WN MI L I G + +AL ++ M P
Sbjct: 314 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 373
Query: 78 DKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
++ TF ++ C +E+G+ + K + ++DL+ + G ++ +
Sbjct: 374 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 433
Query: 137 FDKMRVRS-VVSWTTMISGLAASGDLD 162
M + +++W ++S G ++
Sbjct: 434 IQNMPFEADLLAWKAILSASMKHGHIE 460
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I GLS +LL S +G DH+ +F QI P + WN +IR + +
Sbjct: 29 ITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNP 88
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++ ++ M+ G PD T+PFV KA + VH K G D F+ ++L+
Sbjct: 89 SVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIH 148
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CGD+ RK+FD+M +R+ VSW M+ G A GDLD+A
Sbjct: 149 MYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSA 190
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 12 DQLLVRK------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++L+R +LD + G D A VF + V +W+ MI G AL
Sbjct: 164 DEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALA 223
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M G + + T V+ AC A+E G+ +H V + ++++LMD+Y
Sbjct: 224 IFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYA 283
Query: 126 KCGDVDGGRKMFD--KMRVRSVVSWTTMISGLAASG 159
KCG ++ +F M V+ W T+I GLA G
Sbjct: 284 KCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHG 319
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSL 61
+++ G D +L +L+DL + G A VF ++ +VF WN++IRA DG
Sbjct: 93 RLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCE 152
Query: 62 QALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A+ LY M+ G +PD FT+P V+KAC A L + G+EVH ++ ++ D+FV + L
Sbjct: 153 AAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGL 212
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D+Y KCG +D +F+ +R W +MI+ +G
Sbjct: 213 IDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNG 251
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R + D + L+D+ + G D A VF+ WN MI A +G +
Sbjct: 196 RVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAE 255
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L M G P T I A + A+ +G+E+HG + GF ++++L+D
Sbjct: 256 ALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLD 315
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G V +F+++ R ++SW MI G G D A
Sbjct: 316 MYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHA 357
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
+ ++++C+ S A+ G+++H + +G D + + L+DLY CG V R++FD+M
Sbjct: 70 NYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEM 129
Query: 141 RVR-SVVSWTTMISGLAASGDLDAA 164
+ +V W +I A G +AA
Sbjct: 130 PNQGNVFLWNVLIRAYARDGPCEAA 154
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + L LLD+ + G A ++F Q+ + +WN MI + G + A
Sbjct: 300 RRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFE 359
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
L++ M PD TF V+ AC +++ KEV L V
Sbjct: 360 LFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMV 401
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 8 GLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G +D +R+LL + G HA LVF QI P F +N +IR + A+
Sbjct: 5 GFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVS 64
Query: 66 LYNLMICNG----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LY M+ G RPDK TFPFV++AC A A + G +VH VKAG D FV++ L+
Sbjct: 65 LYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALI 124
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ CG++ +FD V+W+ MI+G A GD+ AA
Sbjct: 125 GMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 167
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 22 LCSFYGKTDHALL--VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
+ ++ + D AL +F Q+ V +WN+MI GS L AL L+ M G +PD
Sbjct: 186 ITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDI 245
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF---VQSTLMDLYLKCGDVDGGRKM 136
T ++ AC S ++ G+ +H ++ FSR+ F + + L+D+Y KCG + ++
Sbjct: 246 VTMLSLLSACADSGDLDVGQRLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEV 304
Query: 137 FDKMRVRSVVSWTTMISGLAASGDL 161
F MR + V +W +++ GLA G +
Sbjct: 305 FWSMRDKDVSTWNSIVGGLALHGHV 329
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A VF +R V TWN ++ L + G L+++ ++ M+
Sbjct: 283 VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKG 342
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
RPD+ TF V+ AC ++KG+E L K ++ ++D+ + G +
Sbjct: 343 KVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKE 402
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ D M+ + V W T++S G+++ A
Sbjct: 403 AFEFIDTMKCEPNSVIWRTLLSACRVHGEIELA 435
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 88/157 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D ++ L+ + + + +++L VF ++ V +WN +I G + +A
Sbjct: 133 VVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +GF P+ + I AC L +E+GKE+H VK GF D +V S L+D+
Sbjct: 193 LELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDM 252
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KC ++ R++F KM +S+V+W +MI G A GD
Sbjct: 253 YGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGD 289
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR ++ D + L+DL G+ + A VFS+ + +WN+MI + G+ +A
Sbjct: 335 VIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKA 394
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +Y+ M+ G +PD TF V+ AC A+EKGK++H ++ D + S L+D+
Sbjct: 395 VEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDM 454
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+ ++F+ + + VVSWT MIS + G A
Sbjct: 455 YSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREA 495
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDG 58
+K ++ G D+ + L+D+ YGK D A VF ++ + WN MI+ G
Sbjct: 232 RKCVKKGFELDEYVNSALVDM---YGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKG 288
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
S + + N MI G RP + T ++ AC S + GK +HG +++ + D++V
Sbjct: 289 DSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNC 348
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+L+DLY KCG+ + +F K + SW MIS + G+
Sbjct: 349 SLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGN 390
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 10/169 (5%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH--ALLVFSQ--IRCPHVFTWNLMIRALTID 57
Q+I+ GL D +L + L+++ ++ DH A VF IR V+ WN ++ + +
Sbjct: 28 QRILTLGLRRDVVLCKSLINV--YFTCKDHCSARHVFENFDIR-SDVYIWNSLMSGYSKN 84
Query: 58 GSSLQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIE-KGKEVHGLAVKAGFSRDMF 115
L ++ L+ C+ PD FTFP VIKA +L E G+ +H L VK+G+ D+
Sbjct: 85 SMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA-YGALGREFLGRMIHTLVVKSGYVCDVV 143
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V S+L+ +Y K + ++FD+M R V SW T+IS SG+ + A
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKA 192
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L D+LL+ LLD+ S G A +F+ I V +W +MI A G +AL ++
Sbjct: 441 LETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFD 500
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKG 98
M G +PD T V+ AC + I++G
Sbjct: 501 EMQKFGLKPDGVTLLAVLSACGHAGLIDEG 530
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 85 VIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+++ C S ++ + K VH + G RD+ + +L+++Y C D R +F+ +R
Sbjct: 9 LLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIR 68
Query: 144 S-VVSWTTMISGLAASG 159
S V W +++SG + +
Sbjct: 69 SDVYIWNSLMSGYSKNS 85
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 8 GLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G +D +R+LL + G HA LVF QI P F +N +IR + A+
Sbjct: 5 GFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVS 64
Query: 66 LYNLMICNG----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LY M+ G RPDK TFPFV++AC A A + G +VH VKAG D FV++ L+
Sbjct: 65 LYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALI 124
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ CG++ +FD V+W+ MI+G A GD+ AA
Sbjct: 125 GMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 167
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 22 LCSFYGKTDHALL--VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
+ ++ + D AL +F Q+ V +WN+MI GS L AL L+ M G +PD
Sbjct: 186 ITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDI 245
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF---VQSTLMDLYLKCGDVDGGRKM 136
T ++ AC S ++ G+ +H ++ FSR+ F + + L+D+Y KCG + ++
Sbjct: 246 VTMLSLLSACADSGDLDVGQRLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEV 304
Query: 137 FDKMRVRSVVSWTTMISGLAASGDL 161
F MR + V +W +++ GLA G +
Sbjct: 305 FWSMRDKDVSTWNSIVGGLALHGHV 329
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A VF +R V TWN ++ L + G L+++ ++ M+
Sbjct: 283 VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKG 342
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
RPD+ TF V+ AC ++KG+E L K ++ ++D+ + G +
Sbjct: 343 KVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKE 402
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ D M+ + V W T++S G+++ A
Sbjct: 403 AFEFIDTMKCEPNSVIWRTLLSACRVHGEIELA 435
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 8 GLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G +D +R+LL + G HA LVF QI P F +N +IR + A+
Sbjct: 35 GFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVS 94
Query: 66 LYNLMICNG----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LY M+ G RPDK TFPFV++AC A A + G +VH VKAG D FV++ L+
Sbjct: 95 LYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALI 154
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ CG++ +FD V+W+ MI+G A GD+ AA
Sbjct: 155 GMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 197
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 22 LCSFYGKTDHALL--VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
+ ++ + D AL +F Q+ V +WN+MI GS L AL L+ M G +PD
Sbjct: 216 ITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDI 275
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF---VQSTLMDLYLKCGDVDGGRKM 136
T ++ AC S ++ G+ +H ++ FSR+ F + + L+D+Y KCG + ++
Sbjct: 276 VTMLSLLSACADSGDLDVGQRLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEV 334
Query: 137 FDKMRVRSVVSWTTMISGLAASGDL 161
F MR + V +W +++ GLA G +
Sbjct: 335 FWSMRDKDVSTWNSIVGGLALHGHV 359
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A VF +R V TWN ++ L + G L+++ ++ M+
Sbjct: 313 VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKG 372
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
RPD+ TF V+ AC ++KG+E L K ++ ++D+ + G +
Sbjct: 373 KVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKE 432
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ D M+ + V W T++S G+++ A
Sbjct: 433 AFEFIDTMKCEPNSVIWRTLLSACRVHGEIELA 465
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G+S D+ + KLL + D ++ + + P F WN +IRA + + ++
Sbjct: 40 GISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSIT 99
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M+ NG PD T+PF++KA L E G VH VK+G D F+Q++L+ +Y
Sbjct: 100 VFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYA 159
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
C D+ RK+FD+M +++V+W M+ G A GDL+ A
Sbjct: 160 SCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMA 198
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF+ + V +W+ +I +A+ L+ M +G ++ T +
Sbjct: 193 GDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSAL 252
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-- 144
AC A+E G+ +H V+ + +Q++L+D+Y KCG + +F ++
Sbjct: 253 CACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEAD 312
Query: 145 VVSWTTMISGLAASGDLDAA 164
V+ W +I GLA G + A
Sbjct: 313 VLIWNAIIGGLATHGLIKEA 332
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 76/129 (58%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A VF+ I P+VFTWN M R + AL Y MI + PD T+PF++KA
Sbjct: 82 YAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAIS 141
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
SL + +G+ +H + ++ GF +FVQ++L+ +Y CGD + +F+ MR R +V+ +
Sbjct: 142 KSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXIS 201
Query: 151 MISGLAASG 159
+I+G A +G
Sbjct: 202 VINGFALNG 210
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + LL + + G T+ A VF +R + +I ++G +AL
Sbjct: 157 IRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEAL 216
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD FT ++ A A+E G+ VH +K G + V ++L+DLY
Sbjct: 217 TLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLY 276
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC + R+ VSWT++I GLA +G
Sbjct: 277 AKCDAIWEXE--------RNAVSWTSLIVGLAVNG 303
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 10/160 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + + LLDL Y K D ++ R + +W +I L ++G +A
Sbjct: 257 LLKVGLRENSHVTNSLLDL---YAKCD---AIWEXER--NAVSWTSLIVGLAVNGFGEEA 308
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L L+ M G P + TF V+ AC +++G + + + G + ++D
Sbjct: 309 LELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVD 368
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDL 161
L + G V + M V+ + V+W T++ G L
Sbjct: 369 LLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHL 408
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 4/138 (2%)
Query: 26 YGKTDHAL---LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
YGK L ++F ++ +FTWN M+ +G +L AL +Y M G D +TF
Sbjct: 2 YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
P ++KAC + G E+HGLA+K G +FV ++L+ LY KC D++G RK+FD+M V
Sbjct: 62 PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121
Query: 143 RS-VVSWTTMISGLAASG 159
R+ VVSW ++IS + +G
Sbjct: 122 RNDVVSWNSIISAYSGNG 139
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 1/160 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GLS D +L ++D+ G D+A+ +F I C V +W MI +G + +AL
Sbjct: 389 IRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKAL 447
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+++ M G PD T ++ A + ++KGKE+HG ++ GF + + +TL+D+Y
Sbjct: 448 EVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMY 507
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CG V+ K+F + R+++ WT MIS G +AA
Sbjct: 508 ARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAA 547
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D + L+ + +GK A ++F + + TWN M+ +G +A
Sbjct: 186 ILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEA 245
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + + +PD+ + +I A + GKE+H A+K GF ++ V +TL+D+
Sbjct: 246 LEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDM 305
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KC + G + FD M + ++SWTT +G A +
Sbjct: 306 YAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQN 340
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQA 63
I+YG + +V L+ L + + A +F ++ + V +WN +I A + +G +A
Sbjct: 85 IKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEA 144
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ M+ G + +TF ++AC S I+ G ++H +K+G D++V + L+ +
Sbjct: 145 LCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAM 204
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y++ G + +F + + +V+W +M++G +G
Sbjct: 205 YVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 5 IRYGLSNDQLLVRKLLDL-----CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
I+ G ++ L+ L+D+ C YG L+ + +W +
Sbjct: 288 IKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDL-----ISWTTAAAGYAQNKC 342
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
LQAL L + G D ++ AC + K KE+HG ++ G S D +Q+T
Sbjct: 343 YLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNT 401
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++D+Y +CG +D ++F+ + + VVSWT+MIS +G
Sbjct: 402 IIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNG 441
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G + + L+D+ + G + A +F+ + ++ W MI A + G A
Sbjct: 488 IIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAA 547
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ L+ M PD TF ++ AC S + +GK
Sbjct: 548 VELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGK 583
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+Y KCG V +FDKM RS+ +W M+ G ++G+
Sbjct: 1 MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGE 38
>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL N + LLD+ + GK VF ++ +V +W +I L G + +AL
Sbjct: 150 VKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEAL 209
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ ++ M + D +TF +KAC S A+ G+E+H A+K GF FV +TL +Y
Sbjct: 210 VYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMY 269
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ G +F+KM +R VVSWTT+I+ L G + A
Sbjct: 270 NKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECA 309
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G +A +F ++ +W +I S +ALLL+ N+ + +G R D F
Sbjct: 70 GHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLA 129
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
KAC + + G+ +HG AVK G +FV S L+D+Y K G + GR++F +M +R+V
Sbjct: 130 HKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNV 189
Query: 146 VSWTTMISGLAASG 159
VSWT +I+GL +G
Sbjct: 190 VSWTAIITGLVRAG 203
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-----------GKTDHALLVFSQIRCPHVFTWNLMIRA 53
+ YG ++K D+ SF GK ++ L +F ++ V +W +I
Sbjct: 240 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 299
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
L G A+ + M + P+++TF VI C IE G+++H L + G +
Sbjct: 300 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 359
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ V++++M +Y KCG + +F +M R +VSW+T+I+G + G + A
Sbjct: 360 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEA 410
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ GL+ + ++ + + G+ + ++F ++ + +W+ +I + G +A
Sbjct: 351 ILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEA 410
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQST--- 119
L + M G +P +F V+ AC +E GK++H + G M Q +
Sbjct: 411 FELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSK 470
Query: 120 -----LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
++DL + G + M + M R V W+T++ GD++
Sbjct: 471 EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVE 519
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 80 FTFPFVIKA-CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT P V CI +E+ + + D+ + + +K G + R+MFD
Sbjct: 21 FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 80
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
KM + +SWTT+ISG + D A
Sbjct: 81 KMSQKDEISWTTLISGYVNANDSSEA 106
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I R GL D + + KL+ C+ F G ++A +F IR P + +NL+I+A G+
Sbjct: 59 QIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNY 118
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ L+L++ + +G PD FT+PFV KA + K +++ GL K G D +V+++L
Sbjct: 119 KRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSL 178
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+D+Y + D + +FD+M R V+SW MISG
Sbjct: 179 IDMYAQLALTDVMKMLFDEMPDRDVISWNVMISG 212
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+D+ + TD ++F ++ V +WN+MI A
Sbjct: 163 VTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDA 222
Query: 64 LLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ + +G PD+ T + AC A +E GK++H V+ + + L+D
Sbjct: 223 INVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPIIGNALLD 281
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + R +F++M ++V+ WTTM+SG A G+L+ A
Sbjct: 282 MYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEA 323
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F V W MI +A+ L+ M +PDKF ++
Sbjct: 318 GELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLL 377
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C + AIE+GK +H + D V + L+++Y KCG ++ ++F +RV+
Sbjct: 378 TGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTA 437
Query: 147 SWTTMISGLAASGDLDAA 164
SWT++I GLA +G A
Sbjct: 438 SWTSIICGLAMNGKTSKA 455
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+++ + G + AL +F +R +W +I L ++G + +AL L++ M
Sbjct: 404 DAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMK 463
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKE 100
G RPD TF V+ AC +E+G++
Sbjct: 464 QAGVRPDDITFIGVLSACSHGGLVEEGRK 492
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-ALLLYNL 69
N L ++L S + +A VF QI P+ F WN +IRA Q A+ LY+
Sbjct: 59 NTFFLYSRILHFSSLH-DLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHR 117
Query: 70 MICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ G DK TFPFV+KAC A+ +G+++H +K GF B+++ ++L+ Y C
Sbjct: 118 MLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSBVYINNSLVHFYATCD 177
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D + +FD+M RS+VSW +I G+ DAA
Sbjct: 178 RLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G +B + L+ + + D A VF ++ + +WN++I A G
Sbjct: 153 QILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDA 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T + AC ++ G H +K A D+ + ++
Sbjct: 213 ALNLFGEMQ-KFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLNTS 271
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y KCG ++ ++F +M R V SW +MI G + G++ AA
Sbjct: 272 LVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAA 316
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND LL L+D+ G + AL +F ++ V +WN MI + G AL + M
Sbjct: 264 NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCM 323
Query: 71 I-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCG 128
+ P+ TF V+ AC + +G+ + V + ++ L+DL + G
Sbjct: 324 VRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAG 383
Query: 129 DVDGGRKMFDKMRVRS-VVSWTTMI 152
+D + M +R +V W +++
Sbjct: 384 LIDEALDVVSNMPMRPDLVIWRSLL 408
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF QI P F WN++IR L + A+ Y G PD TFPF++KAC A
Sbjct: 508 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 567
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ +G+++H K G D+FV ++L+ LY CG++ R +FD+M V+ VVSW ++I G
Sbjct: 568 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 627
Query: 155 LA 156
+
Sbjct: 628 YS 629
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G+ ++A L+F ++ C +V +W+ MI T ++A+ L+ M+ G P + T V
Sbjct: 168 WGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAV 227
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRS 144
+ A I G+ +HG K G D+ V ++L+DLY K G + ++FD+M R+
Sbjct: 228 VPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRN 287
Query: 145 VVSWTTMISGLAASG 159
+VSWT++ISG A G
Sbjct: 288 LVSWTSIISGFAMHG 302
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F QI + +W+ MI + AL ++ M +PD V+ +C A
Sbjct: 741 IFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGA 800
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ GK VH + D ++++L+D+Y+KCG ++F +M+ + +SW ++I G
Sbjct: 801 LDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 860
Query: 155 LAASG 159
LA +G
Sbjct: 861 LANNG 865
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALL-VFSQIRCPHVF-----TWNLMIRALTIDGSSLQALL 65
D + R+L+ L + LL + SQ+ VF W+ +++A + AL
Sbjct: 17 DAIAARRLVALLLEHQDRRRQLLQIHSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQ 76
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ + D + F F +KAC ++HGL V+ GF +V + L+++Y+
Sbjct: 77 LFRHARWHA-ADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYI 135
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
CG + R F++M V++ VSW +I+G A G+++ A
Sbjct: 136 LCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYA 174
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + R + D ++ L+D+ G AL VF +++ +WN +I L +G
Sbjct: 809 EYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEK 868
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQST 119
++L L+ M+ GFRP+ TF V+ AC + +E+G + H ++K +S + M
Sbjct: 869 ESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLEPQMKHYGC 927
Query: 120 LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
++DL + G ++ + +M + V W ++ GD+ A
Sbjct: 928 VVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIA 973
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I + GL +D + L+ L + G +A VF ++ V +WN +I +
Sbjct: 576 NHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFK 635
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIA----SLAIEKGKEVHGLAVKAGFSRDMFVQ 117
L L+ LM G + DK T V+ AC S+A + + ++ D+++
Sbjct: 636 DILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV----DVYLG 691
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+TL+D + + G + K+F M+VR++V+ MI+ A D+ +A
Sbjct: 692 NTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSA 738
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ-IRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL D + L+DL + G ++L VF + + ++ +W +I + G S++A+
Sbjct: 249 KEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAV 308
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L+ M G RP++ TF V+ AC +E+G
Sbjct: 309 ELFADMRRAGIRPNRITFLSVLHACSHGGLVEQG 342
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL N + LLD+ + GK VF ++ +V +W +I L G + +AL
Sbjct: 143 VKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEAL 202
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ ++ M + D +TF +KAC S A+ G+E+H A+K GF FV +TL +Y
Sbjct: 203 VYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMY 262
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ G +F+KM +R VVSWTT+I+ L G + A
Sbjct: 263 NKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECA 302
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G +A +F ++ +W +I S +ALLL+ N+ + +G R D F
Sbjct: 63 GHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLA 122
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
KAC + + G+ +HG AVK G +FV S L+D+Y K G + GR++F +M +R+V
Sbjct: 123 HKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNV 182
Query: 146 VSWTTMISGLAASG 159
VSWT +I+GL +G
Sbjct: 183 VSWTAIITGLVRAG 196
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-----------GKTDHALLVFSQIRCPHVFTWNLMIRA 53
+ YG ++K D+ SF GK ++ L +F ++ V +W +I
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
L G A+ + M + P+++TF VI C IE G+++H L + G +
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ V++++M +Y KCG + +F +M R +VSW+T+I+G + G + A
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEA 403
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ GL+ + ++ + + G+ + ++F ++ + +W+ +I + G +A
Sbjct: 344 ILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEA 403
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M G +P +F V+ AC +E GK++H + G V S L+++
Sbjct: 404 FELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINM 463
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ ++FD +VSWT MI+G A G
Sbjct: 464 YCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHG 499
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ GL + +++ L+++ G + A +F + +W MI G S +
Sbjct: 445 VLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREV 504
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ + G RPD TF V+ AC + ++ G + + ++ K S ++D
Sbjct: 505 IDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMID 564
Query: 123 LYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
L + G + M + M R V W+T++ GD++
Sbjct: 565 LLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVE 605
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 80 FTFPFVIKA-CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT P V CI +E+ + + D+ + + +K G + R+MFD
Sbjct: 14 FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 73
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
KM + +SWTT+ISG + D A
Sbjct: 74 KMSQKDEISWTTLISGYVNANDSSEA 99
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 74/134 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VFS++ +V +WNLMI +G ++ L + M GF+PD+ T ++
Sbjct: 444 GDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITIL 503
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+AC A +E+GK VH AVK G D V ++L+ +Y KCG V R +FDKM R V
Sbjct: 504 EACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTV 563
Query: 147 SWTTMISGLAASGD 160
+W M++G GD
Sbjct: 564 AWNAMLAGYGQHGD 577
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D + L+ + S G+ A VF ++ +V +W +I+A +A LY
Sbjct: 187 GMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELY 246
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ G P+ TF ++ +C A+ +G+ +H + G DM V + L+ +Y KC
Sbjct: 247 EQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKC 306
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
V R++FD+M R V+SW+ MI+G A SG D
Sbjct: 307 NSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKD 341
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG----- 58
I GL D ++ L+ + A +F ++ V +W+ MI G
Sbjct: 284 ISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKE 343
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
S + L M G P+K TF +++AC A A+E+G+++H K GF D +Q+
Sbjct: 344 SIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQT 403
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++Y KCG + ++F KM ++VV+WT+ +S GDL +A
Sbjct: 404 AIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSA 449
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D L L++ S + A VF ++ V TW+ MI A + +A +
Sbjct: 86 GVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTF 145
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M P++ TF ++KAC +EKG+++H + G D+ V + L+ +Y KC
Sbjct: 146 ERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKC 205
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G++ ++F KM R+VVSWT +I A L+ A
Sbjct: 206 GEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEA 242
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ GL +D ++ L+ + S G+ A VF ++ WN M+ G L+
Sbjct: 521 EAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLE 580
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
A+ L+ M+ P++ T VI AC + +++G+E+
Sbjct: 581 AVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREI 619
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL N + LLD+ + GK VF ++ +V +W +I L G + +AL
Sbjct: 143 VKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEAL 202
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ ++ M + D +TF +KAC S A+ G+E+H A+K GF FV +TL +Y
Sbjct: 203 VYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMY 262
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ G +F+KM +R VVSWTT+I+ L G + A
Sbjct: 263 NKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECA 302
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G +A +F ++ +W +I S +ALLL+ N+ + +G R D F
Sbjct: 63 GHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLA 122
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
KAC + + G+ +HG AVK G +FV S L+D+Y K G + GR++F +M +R+V
Sbjct: 123 HKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNV 182
Query: 146 VSWTTMISGLAASG 159
VSWT +I+GL +G
Sbjct: 183 VSWTAIITGLVRAG 196
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-----------GKTDHALLVFSQIRCPHVFTWNLMIRA 53
+ YG ++K D+ SF GK ++ L +F ++ V +W +I
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
L G A+ + M + P+++TF VI C IE G+++H L + G +
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ V++++M +Y KCG + +F +M R +VSW+T+I+G G + A
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEA 403
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ GL+ + ++ + + G+ + ++F ++ + +W+ +I G +A
Sbjct: 344 ILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEA 403
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M G +P +F V+ AC +E GK++H + G V S L+++
Sbjct: 404 FELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINM 463
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ ++FD +VSWT MI+G A G
Sbjct: 464 YCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHG 499
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ GL + +++ L+++ G + A +F + +W MI G S +
Sbjct: 445 VLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREV 504
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ + G RPD TF V+ AC + ++ G + ++ K S ++D
Sbjct: 505 IDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMID 564
Query: 123 LYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
L + G + M + M R V W+T++ GD++
Sbjct: 565 LLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVE 605
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 80 FTFPFVIKA-CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT P V CI +E+ + + D+ + + +K G + R+MFD
Sbjct: 14 FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 73
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
KM + +SWTT+ISG + D A
Sbjct: 74 KMSQKDEISWTTLISGYVNANDSSEA 99
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL++D +V KL L + Y HA +F + C V+ WN ++R+ ++G ++ L
Sbjct: 28 LKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETL 87
Query: 65 LLYNLMICNGF---RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L++ M + RPD +T +K+C +E GK +HG K DMFV S L+
Sbjct: 88 SLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALI 147
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+LY KCG ++ K+F + + VV WT++I+G +G + A
Sbjct: 148 ELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELA 190
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G L +L+L G A +F ++ + +W+ M+ +G+ A
Sbjct: 233 VKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNA 292
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N MI ++ T ++AC +S +E+GK +H LAV GF D+ V + LMD+
Sbjct: 293 LNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDM 352
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KC +F++M + VVSW + SG A G
Sbjct: 353 YMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIG 388
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 79/160 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ YG D + L+D+ +A+ +F+++ V +W ++ G + ++L
Sbjct: 335 VNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSL 394
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G RPD ++ A +++ +H K+GF + F+ ++L++LY
Sbjct: 395 GVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELY 454
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC +D K+F MR + VV+W+++I+ G + A
Sbjct: 455 AKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEA 494
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ ND + L++L S G+ + A+ VF++ V W +I +GS AL ++
Sbjct: 136 IDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFS 195
Query: 69 LMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ PD T AC G+ VHG + GF + + +++++LY K
Sbjct: 196 RMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKT 255
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + +F +M + ++SW++M++ A +G
Sbjct: 256 GSIRSAANLFREMPYKDIISWSSMVACYADNG 287
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G N++ + L++L + D+A VF +R V TW+ +I A G +A
Sbjct: 435 VSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEA 494
Query: 64 L-LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
L L Y + + +P+ TF ++ AC + IE+G K H + + + ++
Sbjct: 495 LKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMV 554
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS 144
DL + G++D M ++M +++
Sbjct: 555 DLLGRMGELDKALDMINEMPMQA 577
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ GL++D L LL + G D A+ VF + +F+WN +I A + +A
Sbjct: 12 IVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAKNRHGRKA 71
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M G +PD T V+ AC + +E+GK++H A+ G S + VQ+ L+ +
Sbjct: 72 IEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSIIVQNALVSM 131
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +C +D R +FDK+ +SVVSW MI+ A G+ + A
Sbjct: 132 YARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQA 172
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK D A VFS++R V +W +I A T G + +AL LY M G PD
Sbjct: 328 LISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEGMEPD 387
Query: 79 KFTFPFVIKACIASLAIEKGKEVHG--LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
K TF V+ AC + +E G+ +H LA K GFS + V + L+++Y+KCG +D ++
Sbjct: 388 KVTFTSVLSACSNTSDLELGQALHARLLARKDGFSDGVLV-AALINMYVKCGRLDLSSEI 446
Query: 137 FDKMR-VRSVVSWTTMISGLAASGDLDAA 164
F + ++VV W MI+ G AA
Sbjct: 447 FQSCKDTKAVVVWNAMITAYEQEGYSRAA 475
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 73/134 (54%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+GK A VF+ I+ +V +WN M+ A T + +AL +Y+ M+ + D+ T
Sbjct: 234 FGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIA 293
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ + ++ G E+H L+V G+ ++ VQ+ L+ +Y KC ++D R++F K+R V
Sbjct: 294 LGISASLRLLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDV 353
Query: 146 VSWTTMISGLAASG 159
VSWT +I G
Sbjct: 354 VSWTALIVAYTQHG 367
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+D +LV L+++ G+ D + +F + V WN MI A +G S A+ LY++
Sbjct: 422 SDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDM 481
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMDLYLKCG 128
M G PD+ T ++ AC +EKG+++H + S++ V + L+ +Y CG
Sbjct: 482 MKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYASCG 541
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++ + +F +M+ R VVSWT +IS GD
Sbjct: 542 EIREAKAVFKRMKNRDVVSWTILISAYVQGGD 573
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GLS+ ++ L+ + + + D A +VF +I V +WN MI A G + QAL L+
Sbjct: 117 GLSSSIIVQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLF 176
Query: 68 NLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M P++ TF V AC + E GK +H + ++ V + ++ +Y K
Sbjct: 177 KRM---ELEPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGK 233
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
G V R++F+ ++ ++VVSW M+ G +LD
Sbjct: 234 FGKVGMARQVFNGIQHKNVVSWNAML-GAYTQNNLD 268
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
A+ +G+ +H V +G + D F+ L+ +Y KCG VD ++F + RS+ SW +I+
Sbjct: 1 ALPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIA 60
Query: 154 GLA 156
A
Sbjct: 61 AFA 63
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 1/156 (0%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S + +++ L+ + + G+ A VF +++ V +W ++I A G + +AL LY
Sbjct: 524 SQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRLYRR 583
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ G +P + TF V AC + +++ K ++ + S ++ + + G
Sbjct: 584 MLVEGVQPTEPTFLCVFLACGHAGLVDECKWYFQSMIEDRITPTFDHYSCVVTVLSRAGK 643
Query: 130 VDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
++ + M V WT+++ GDL A
Sbjct: 644 LEEAEDLLHSMPFNPGSVGWTSLLGACRTHGDLKRA 679
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I GLS +LL S +G DH+ +F QI P + WN +IR + +
Sbjct: 36 ITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNP 95
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++ ++ M+ G PD T+PF+ KA + VH K G D F+ ++L+
Sbjct: 96 SVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIH 155
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CGD+ RK+FD+M +R+ VSW M+ G A GDLD+A
Sbjct: 156 MYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSA 197
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 12 DQLLVRK------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++L+R +LD + G D A VF + V +W+ MI G AL
Sbjct: 171 DEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALA 230
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M G + ++ T V+ AC A+E+G+ +H V + ++++LMD+Y
Sbjct: 231 IFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYA 290
Query: 126 KCGDVDGGRKMFD--KMRVRSVVSWTTMISGLAASG 159
KCG ++ +F M V+ W T+I GLA G
Sbjct: 291 KCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHG 326
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 88/154 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G ++ L KL+ +G+T +A VF ++ +V +W I +G A
Sbjct: 63 IIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDA 122
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL+++ M G R ++FT+ V++AC +E+G ++HG K F ++FVQS L+DL
Sbjct: 123 LLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDL 182
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+ KCG+++ R +F+ M R VVSW +I G AA
Sbjct: 183 HSKCGNMEDARYLFETMSERDVVSWNAVIGGYAA 216
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
S +AL L+ M D TF ++ C IASL+I G+++H LA+K S D+
Sbjct: 322 SREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSI--GRQIHALAIKYKPSYDVATG 379
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ L+D+Y K G+++ + F +M+ ++V+SWT++I+G G
Sbjct: 380 NALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHG 421
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ CI + +++G +H ++ GF ++ + + L+ Y+K G+ RK+FD+M R+
Sbjct: 43 ILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERN 102
Query: 145 VVSWTTMISGLAASGDLDAA 164
VVSWT ISG A +G A
Sbjct: 103 VVSWTAQISGYAKNGHYQDA 122
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+DL S G + A +F + V +WN +I + + ++ M+ G PD
Sbjct: 179 LVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPD 238
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT V+KA + + K ++HG+ ++ GF + + +L+D Y K + ++
Sbjct: 239 CFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYK 298
Query: 139 KMRVRSVVSWTTMISGLA 156
M + V+S+T +++G A
Sbjct: 299 SMLKKDVISFTAIMTGYA 316
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+Y S D L+D+ + G+ + A F +++ +V +W +I G +A+
Sbjct: 368 IKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAI 427
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDL 123
LY M G +P+ TF ++ AC S +G E + + K S ++DL
Sbjct: 428 ALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDL 487
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDL 161
+ + G ++ M KM ++ S W ++ + G +
Sbjct: 488 FARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHM 526
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ G+ +D ++ KLL +C+ + A L+F+++ +W++MI +G +
Sbjct: 25 QVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYER 84
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +I G +PD F+ PFVIKAC ++ + G+ +H +K G D FV STL+D
Sbjct: 85 CFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVD 144
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG +D +++FD+M + +V+ T MI+G A G
Sbjct: 145 MYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECG 181
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+D+ + G D+A +F ++ + T +MI G ++
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNES 186
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+L++ M +GF PDK ++ AC A+ K + VH +S D+ + + ++D+
Sbjct: 187 WVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDM 246
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D R++FD+M ++V+SW+ MI G
Sbjct: 247 YAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHG 282
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
RY L D L ++D+ + G D + +F ++ +V +W+ MI A G +AL
Sbjct: 232 RYSL--DVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALE 289
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLY 124
L+++M+ +G P++ TF ++ AC + ++ G ++ L +V G D+ + ++DL
Sbjct: 290 LFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLL 349
Query: 125 LKCGDVDGGRKMFDKMRVR 143
+ G +D ++ + M V
Sbjct: 350 GRAGRLDQALRLIENMEVE 368
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
K+VH G D+ V + L+ + K D+ +F+KM R VSW+ MI G +
Sbjct: 20 KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79
Query: 159 GDLD 162
GD +
Sbjct: 80 GDYE 83
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++R +D +L +F + D+A VF QI P++++WN++IRAL
Sbjct: 161 QMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDP 220
Query: 61 LQALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+Q++L++ M+ + F P+KFTFP +IKA GK VHG+A+K F D+FV ++
Sbjct: 221 IQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNS 280
Query: 120 LMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGDLDAA 164
L+ Y CG +D +F+ + + +VSW +M++G G D A
Sbjct: 281 LIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKA 327
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSSLQ 62
I+ +D ++ L+ + G D A LVF I + + +WN M+ G +
Sbjct: 267 IKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDK 326
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M G P+ T V+ AC ++ + G++V + ++ V + +D
Sbjct: 327 ALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATID 386
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+++KCG+V+ R +FD M R VVSWTT+I G A
Sbjct: 387 MFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN--LMICNGFRPDKFTFPFVIKACIAS 92
+F + + WN++I G +AL ++ + +G RPD+ T + AC
Sbjct: 431 IFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQL 490
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
A++ G+ +HG K + + ++L+D+Y K GDV+ ++F + + V W+ MI
Sbjct: 491 GAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMI 550
Query: 153 SGLAASGDLDAA 164
+GLA G +AA
Sbjct: 551 AGLAMHGRGEAA 562
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ S G + A+ VF I VF W+ MI L + G A+ L+ M
Sbjct: 514 LATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQ 573
Query: 75 FRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+P+ TF ++ AC S +++GK V+G+ K S ++D+ +
Sbjct: 574 VKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKH------YSCMVDVLGRA 627
Query: 128 GDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
G ++ K + M + S W ++ G+L+ A
Sbjct: 628 GHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELA 665
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++R GL D +L+ S + D+A VF QI P+++TWN +IRA +
Sbjct: 57 QMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNP 116
Query: 61 LQALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
Q+LL++ M+ PDKFTFPF+IKA + GK HG+ +K D+F+ ++
Sbjct: 117 HQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNS 176
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y KCG++ G ++F + R VVSW +MI+ G + A
Sbjct: 177 LIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEA 221
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 38/161 (23%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ L +D ++ L+ + G+ VF I V +WN MI A G +A
Sbjct: 162 VIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEA 221
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + + + ++D+
Sbjct: 222 LELFQEMETQN--------------------------------------SLTLSNAMLDM 243
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ +++FDKM + +VSWTTM+ G A G+ DAA
Sbjct: 244 YTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 284
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LLYNLMICNGFRPDKFTFPFV 85
G+ D A +F + + WN +I A G +AL L + L + +PD+ T
Sbjct: 279 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVT---- 334
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+K G + + ++L+D+Y KCGD+ +F + + V
Sbjct: 335 --------------------LKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDV 374
Query: 146 VSWTTMISGLAASG 159
W+ MI+GLA G
Sbjct: 375 FVWSAMIAGLAMHG 388
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ + L L+D+ G AL+VF + VF W+ MI L + G A+
Sbjct: 335 LKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAI 394
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
L++ M + +P+ TF ++ AC +E+G+
Sbjct: 395 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR 429
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 88/155 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R+ L ND + L+D+ S G+ A ++F+++ V WN MI L I + +A
Sbjct: 443 VRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAF 502
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M NG P + ++ +I +C ++ +G+++H VK G+ ++++V S L+D+Y
Sbjct: 503 DFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMY 562
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++D R FD M +++V+W MI G A +G
Sbjct: 563 AKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNG 597
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFT----------------- 46
++ GL D L+ +L++L S G AL F + P+ ++
Sbjct: 34 VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93
Query: 47 --------------WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
WN +I AL + +AL LY M+ G P FT V+ AC A
Sbjct: 94 RALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
A++ G+ HGLAVK G ++FV++ L+ +Y KCG V+ ++FD M + VS+T M+
Sbjct: 154 AALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMM 213
Query: 153 SGLAASGDLDAA 164
GL +G +D A
Sbjct: 214 GGLVQAGSVDDA 225
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +F +I P V TWN ++ + + L+ M +PD+ T ++ +C
Sbjct: 369 ARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSR 428
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
++ G +VH +V+ DMFV S L+D+Y KCG + R +F++M R VV W +M
Sbjct: 429 LGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSM 488
Query: 152 ISGLA 156
ISGLA
Sbjct: 489 ISGLA 493
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL + + LL + + G + A+ +F + P+ ++ M+ L GS AL
Sbjct: 167 VKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDAL 226
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIE--------KGKEVHGLAVKAGFSRDMFV 116
L+ M +G R D V+ +C + A E G+ +H L V+ GF D V
Sbjct: 227 RLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHV 286
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+D+Y KC +D K+FD + S VSW +I+G +G
Sbjct: 287 GNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAG 329
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 35/151 (23%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +DQ + L+D+ + + D A+ VF + +WN++I GS +A
Sbjct: 275 IVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKA 334
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + NLM +G P++ T+ ++ +CI
Sbjct: 335 LEVLNLMEESGSEPNEVTYSNMLASCI--------------------------------- 361
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K DV R MFDK+ SV +W T++SG
Sbjct: 362 --KARDVLSARAMFDKISRPSVTTWNTLLSG 390
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G + + L+D+ + G D A + F + ++ WN MI +G +
Sbjct: 542 QIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEK 601
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK 97
A+ L+ M+ RPD TF V+ C S +++
Sbjct: 602 AVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDE 636
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I+ GLS + L KL+ + H+ LVF ++ +VF WN +I +
Sbjct: 47 SRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYN 106
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A L+N M + PD FT + K A+ GK +HG +++ GF D V +++M
Sbjct: 107 EAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIM 166
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+Y KCG+ D RK+FD+M +R+ SW +I+G A SG+ +
Sbjct: 167 SMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCN 207
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D L L+D+ S K VF +++C +VF+W MI +G S +AL L+
Sbjct: 263 GLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLF 322
Query: 68 -NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
++ + +G P++ + V+ AC + + G+++HG AV+ + ++ + + L+D+Y K
Sbjct: 323 RDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSK 382
Query: 127 CGDVDGGRKMF-DKMRVRSVVSWTTMISGLAASG 159
CG +D R++F D + +SW++MISG G
Sbjct: 383 CGSLDSARRVFEDDSLCKDAISWSSMISGYGLHG 416
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS--- 59
K IR G +D ++ ++ + G D + VF ++ + +WN++I + G+
Sbjct: 149 KSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNF 208
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKA----GFSRDM 114
+ M + RPD +T ++ C + + G+E+H VK G D+
Sbjct: 209 REETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDV 268
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L+D+Y + V GR++FD+M+ R+V SWT MI+G +GD D A
Sbjct: 269 HLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEA 318
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQA 63
+R L+N+ L L+D+ S G D A VF C +W+ MI + G +A
Sbjct: 362 VRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEA 421
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
+LLY+ M+ G RPD T ++ AC S + +G ++ + G + + + ++D
Sbjct: 422 ILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVD 481
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ + G +D + V S W ++S GDL+
Sbjct: 482 MLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLE 522
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL D ++ L D+ G A +F + V +W MI +G +
Sbjct: 248 ILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEG 307
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ ++ +G P++FTF V+ AC A E GK+VHG + GF F STL+ +
Sbjct: 308 FALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHM 367
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG++ R++F+ M +VSWT++ISG A +G D A
Sbjct: 368 YTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEA 408
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 21 DLCSFY---------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
DLCS+ G+ A +F Q+ F+W M +AL L+ M
Sbjct: 154 DLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQ 213
Query: 72 -CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
F+ +KFT + A A ++ GKE+HG ++ G D V S L D+Y KCG +
Sbjct: 214 RHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSI 273
Query: 131 DGGRKMFDKMRVRSVVSWTTMI 152
R +FDK R VVSWT MI
Sbjct: 274 GEARHIFDKTVDRDVVSWTAMI 295
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
RP T+ +++ C+ A+++G +VH +GF + + + ++D+Y+KC + ++
Sbjct: 86 RPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKR 145
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R + SW MISG A +G L A
Sbjct: 146 LFDEMAERDLCSWNIMISGYAKAGRLQEA 174
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G L+ + + G +A VF+ + P + +W +I +G +A
Sbjct: 349 MTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEA 408
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
L + L++ +G +PD TF V+ AC + ++KG KE HGL A D +
Sbjct: 409 LQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTA----DHY- 463
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ L+DL + G + + DKM + W +++ G G+L A
Sbjct: 464 -ACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLA 511
>gi|255550217|ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544645|gb|EEF46161.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1439
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++GL++D L +LD+ G + L+F I P W +MI +G +AL
Sbjct: 1218 IKFGLNSDLFLSSGILDMYIKCGNMEDGHLLFDNIPVPDDVAWTIMISGCVENGDEDRAL 1277
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y M +G PD++TF +IKA A+E+G+++H +K + D FV ++L+D+Y
Sbjct: 1278 SVYRQMRLSGILPDEYTFATLIKASSCLTALEQGRQIHANVIKLECASDPFVGTSLIDMY 1337
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ +F +M VR++V W M+ LA G + A
Sbjct: 1338 AKCGIIEDAYCLFRRMDVRNIVVWNAMLVSLAQHGHGEEA 1377
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ + L+D+ S G A +F + WN M+ I G + L L+ M
Sbjct: 1124 ENFVSTALIDVYSRSGLMAEAEFIFENKNKFDLAAWNAMMFGYIICGDHDKGLKLFAFMH 1183
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G D++T KAC + + +E+GK++H LA+K G + D+F+ S ++D+Y+KCG+++
Sbjct: 1184 EKGESCDEYTLATAAKACGSLVRLEQGKQIHALAIKFGLNSDLFLSSGILDMYIKCGNME 1243
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G +FD + V V+WT MISG +GD D A
Sbjct: 1244 DGHLLFDNIPVPDDVAWTIMISGCVENGDEDRA 1276
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS-- 60
II GL++D+ L L+ + S G A +F + + TWN ++ A S
Sbjct: 729 NIITSGLTSDRFLANNLITMYSKCGSVSSARQLFDRTPDRDLVTWNAVLSAYARSDESEY 788
Query: 61 ---LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
++ ++ L+ K T ++K C+ S + + VHG AVK G D+FV
Sbjct: 789 DHVVEGFHIFRLLRERFVSTSKLTLAPMLKLCLLSGYVCASQAVHGYAVKIGLELDVFVS 848
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y K G V R +FD M+ R VV W M+ G
Sbjct: 849 GALVNIYSKFGLVREARGLFDIMQERDVVLWNVMLKAYVEMG 890
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
+ L+++ S G A VF+ + + +WN MI +G +++ L ++ +G
Sbjct: 1025 VANSLINMYSKMGFVSLAHTVFTGMNELDLISWNSMISCYAQNGLQKESVNLLVGLLRDG 1084
Query: 75 FRPDKFTFPFVIKACIA-SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+PD FT V+KAC + + + K++H K + FV + L+D+Y + G +
Sbjct: 1085 LQPDHFTLASVLKACSSLTEGLFLSKQIHVYVTKTSIIAENFVSTALIDVYSRSGLMAEA 1144
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+F+ + +W M+ G GD D
Sbjct: 1145 EFIFENKNKFDLAAWNAMMFGYIICGDHD 1173
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++A +++ + GK +H + +G + D F+ + L+ +Y KCG V R++FD+ R
Sbjct: 710 LLRAAVSTSNLHLGKCIHANIITSGLTSDRFLANNLITMYSKCGSVSSARQLFDRTPDRD 769
Query: 145 VVSWTTMISGLAASGD 160
+V+W ++S A S +
Sbjct: 770 LVTWNAVLSAYARSDE 785
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
V WN + G+ A+ + N++ + + D T V+ A + + GK +H
Sbjct: 952 VVMWNKKLSEYLQAGAFWAAVDCFINMLTSSHVKYDNVTLVVVLAAATGTGDLMLGKLIH 1011
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G+ +K+GF + V ++L+++Y K G V +F M ++SW +MIS A +G
Sbjct: 1012 GMTLKSGFDSVVSVANSLINMYSKMGFVSLAHTVFTGMNELDLISWNSMISCYAQNG 1068
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ ++D + L+D+ + G + A +F ++ ++ WN M+ +L G +
Sbjct: 1317 NVIKLECASDPFVGTSLIDMYAKCGIIEDAYCLFRRMDVRNIVVWNAMLVSLAQHGHGEE 1376
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
AL L+ +M + +PDK TF V+ AC S
Sbjct: 1377 ALHLFKVMQSHSIKPDKVTFIGVLSACSHS 1406
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL D + L+++ S +G A +F ++ V WN+M++A G +AL
Sbjct: 837 VKIGLELDVFVSGALVNIYSKFGLVREARGLFDIMQERDVVLWNVMLKAYVEMGLVKEAL 896
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK----EVHGLAVKAGF---SRDMFVQ 117
++ +G RPD + V+ I+ + + G+ ++ A K F + D+ +
Sbjct: 897 SFFSQFHQSGLRPDDASMRCVVSG-ISEVGYDTGRRYIEQIQAYATKLFFCDDNTDVVMW 955
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSW--TTMISGLAA---SGDL 161
+ + YL+ G F M S V + T++ LAA +GDL
Sbjct: 956 NKKLSEYLQAGAFWAAVDCFINMLTSSHVKYDNVTLVVVLAAATGTGDL 1004
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQ 62
+I GL KL+D S + +L VF ++ +V+ WN +IRA + +G +
Sbjct: 30 VISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPK 89
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL Y + + PDK+TFP VIKAC E G V+ ++ GF D++V + L+D
Sbjct: 90 ALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVD 149
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y + G + R++FD+M VR +VSW ++ISG ++ G + A
Sbjct: 150 MYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ G +D + L+D+ S G A VF ++ + +WN +I + G
Sbjct: 130 KQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +Y+ + + PD FT V+ A L +++G+ +HG +K+G + V + L+
Sbjct: 190 EALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLL 249
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+YLK R++FD+M VR V++ TMI G
Sbjct: 250 AMYLKFSRPTDARRVFDEMVVRDSVTYNTMICG 282
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+ D + L+D+ + G+ +L +F+ + TWN +I A G L
Sbjct: 435 IKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGL 494
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M N PD TF + C ASLA ++ GKE+H ++ G+ ++ + + L+++
Sbjct: 495 QVTTQMRKNKVVPDMATFLVTLPMC-ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ ++F++M R VV+WT MI G+ + A
Sbjct: 554 YSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKA 594
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G + + L+D+ + G A VF+ + C +WN +I G ++A
Sbjct: 333 MLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEA 392
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ +M+ + D T+ +I ++ GK +H +K+G D+ V + L+D+
Sbjct: 393 MKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDM 452
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
Y KCG+V K+F+ M V+W T+IS GD
Sbjct: 453 YAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDF 490
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMI---RALTIDGSSL 61
++ G+++ ++ LL + + + A VF ++ T+N MI L + S+
Sbjct: 234 LKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESV 293
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ + L NL + F+PD T V+ AC + K ++ ++AGF + V++ L+
Sbjct: 294 K-MFLENL---DQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILI 349
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCGD+ R +F+ M + VSW ++ISG SGDL A
Sbjct: 350 DVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEA 392
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G ++ + L+++ S G + + VF ++ V TW MI A + G +A
Sbjct: 535 LLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKA 594
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
L + M +G PD F +I AC S +EKG +K + D ++ + ++
Sbjct: 595 LESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFE-KMKTHYKIDPMIEHYACVV 653
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + + + M + S W +++ SGD++ A
Sbjct: 654 DLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETA 697
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++R GL D +L+ S + D+A VF QI P+++TWN +IRA +
Sbjct: 57 QMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNP 116
Query: 61 LQALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
Q+LL++ M+ PDKFTFPF+IKA + GK HG+ +K D+F+ ++
Sbjct: 117 HQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNS 176
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y KCG++ G ++F + R VVSW +MI+ G + A
Sbjct: 177 LIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEA 221
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ L +D ++ L+ + G+ VF I V +WN MI A G +A
Sbjct: 162 VIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEA 221
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +P+ T V+ AC E G+ VH + + + + ++D+
Sbjct: 222 LELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDM 281
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ +++FDKM + +VSWTTM+ G A G+ DAA
Sbjct: 282 YTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LLYNLMICNGFRPDKFTFPFV 85
G+ D A +F + + WN +I A G +AL L + L + +PD+ T
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A++ G +H K G + + ++L+D+Y KCGD+ +F + + V
Sbjct: 377 LSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDV 436
Query: 146 VSWTTMISGLAASG 159
W+ MI+GLA G
Sbjct: 437 FVWSAMIAGLAMHG 450
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ + L L+D+ G AL+VF + VF W+ MI L + G A
Sbjct: 396 IKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDA 455
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
+ L++ M + +P+ TF ++ AC +E+G+ + + + G + + ++D
Sbjct: 456 IALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVD 515
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ + G ++ ++ +KM + S W ++
Sbjct: 516 ILGRAGLLEEAVELIEKMPMAPAASVWGALL 546
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 78/130 (60%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
++A +F I P F +N MIR S +AL YN M+ G PD FT+P ++KAC
Sbjct: 83 NYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKAC 142
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+I +GK++HG K G D+FVQ++L+++Y +CG+++ +F+K+ ++ SW+
Sbjct: 143 TRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWS 202
Query: 150 TMISGLAASG 159
+M+S A G
Sbjct: 203 SMVSARAGMG 212
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + GL D + L+++ G+ + + VF ++ +W+ M+ A G +
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216
Query: 63 ALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LLL+ M + ++ + AC + A+ G +HG ++ ++ VQ++L+
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y+KCG +D +F KM R+ ++++ MISGLA G+ ++A
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESA 319
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G D AL +F ++ + T++ MI L + G AL +++ MI G PD
Sbjct: 275 LVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD 334
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ-STLMDLYLKCGDVDGGRKMF 137
+ V+ AC S +++G+ V +K G L+DL + G ++ +
Sbjct: 335 HVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI 394
Query: 138 DKMRV-RSVVSWTTMIS 153
+ + ++ V W T +S
Sbjct: 395 QSIPIEKNDVIWRTFLS 411
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 85/159 (53%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q + GL L+ L+++ + G+ D A ++ ++ + WN++I + G S
Sbjct: 487 QCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSR 546
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL Y + DK TF V+ AC +S ++ +GK +H AV+ G D+ V++ L
Sbjct: 547 EALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALT 606
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++Y KCG ++ R++FD M +RS VSW M+ A G+
Sbjct: 607 NMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGE 645
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-A 63
+ G + L+ LL++ G A VF ++ +V TWN M+ ++ G + A
Sbjct: 85 LERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLA 144
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G + + TF V+ + + A+ KGK +H ++ S D+FV + L++
Sbjct: 145 VELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNT 204
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG + RK+FD M RSV +W +MIS + S
Sbjct: 205 YTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 72/126 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A+ F +IR +V +WN+MI A + S +AL L++ M+ G P+ T V+
Sbjct: 6 GSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVL 65
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+C + + G VH L+++ GF ++ V + L+++Y KCG + + +F++M ++VV
Sbjct: 66 NSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVV 125
Query: 147 SWTTMI 152
+W M+
Sbjct: 126 TWNAML 131
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + C V TWN MI A +I S +A ++ M G R D+ TF ++
Sbjct: 209 GSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSIL 268
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC+ ++ GK V + F D+FV + L+ +Y +C + ++F +M+ +++
Sbjct: 269 DACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLI 328
Query: 147 SWTTMISGLAASGDLDAA 164
+W+ +I+ A G A
Sbjct: 329 TWSAIITAFADHGHCGEA 346
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +GL + + L+++ D A VF Q+ P++ +WN MI A
Sbjct: 388 ITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDA 447
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G +PD+ F ++ AC K VH ++G VQ++L+++
Sbjct: 448 LQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNM 507
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G++D + +M + + +W +I+G A G
Sbjct: 508 YAKAGELDVAEVILQEMDEQQITAWNVLINGYALHG 543
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 64/123 (52%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
+ A VF +++ ++ TW+ +I A G +AL + +M G P++ TF ++
Sbjct: 313 EDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 372
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+E+ +H L + G +++ L+++Y +C D R +FD++ + +++SW
Sbjct: 373 TTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWN 432
Query: 150 TMI 152
+MI
Sbjct: 433 SMI 435
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL +D ++ L ++ S G ++A +F + +WN M++A G S + L
Sbjct: 591 VECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVL 650
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L M G + + TF V+ +C A L E + H L G L+DL
Sbjct: 651 KLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDL 710
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ G + K KM + +V+W +++ DLD
Sbjct: 711 LGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLD 750
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 82/155 (52%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S++ +L LL++ G + A VF + P F+W MI A T + L+AL L++
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHR 180
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M G P T V+ AC S A++ GK++H +GF + Q+ L+D+Y KCG
Sbjct: 181 MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGS 240
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ K+F M R+ VSWT MI+ LA G D A
Sbjct: 241 LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEA 275
Score = 85.5 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
L S Y K D A +F+ I V +W+ MI A + G +ALLL++ M +G P
Sbjct: 26 LVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEP 85
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQSTLMDLYLKCGDVDGGRK 135
+ TF V AC +E+G+E+H LA+ +G S + +++ L+++Y++CG ++ RK
Sbjct: 86 NAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARK 145
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDL 161
+FD M SWT+MI+ + +L
Sbjct: 146 VFDTMDHPDAFSWTSMITACTENCEL 171
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+E+G+ +H GF R Q+ L+ +Y KCG +D R +F+ + R+VVSW+ MI
Sbjct: 1 MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60
Query: 155 LAASG 159
A G
Sbjct: 61 YALHG 65
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + L LLD+ + G + + VF+ + + +W MI AL G +AL L+
Sbjct: 220 GFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELF 279
Query: 68 NLMICNGFRPDKFTFPFVIKAC 89
M G D TF V++AC
Sbjct: 280 KEMNLEGMVADATTFICVLRAC 301
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Query: 18 KLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
KLL L + +G + A VF ++ R F WN +I G AL LY M G
Sbjct: 94 KLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGV 153
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PD FTFP V+KAC +I+ G+ VH V++GF+ D+FV + L+D+Y KCG + RK
Sbjct: 154 EPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARK 213
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD++ + +VSW +M++G G
Sbjct: 214 VFDQIEYKDIVSWNSMLTGYTRHG 237
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++R G + D ++ L+D+ S G A VF QI + +WN M+ T G
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHF 240
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +++ MI G+ PD ++ + I+S+ + +HG ++ G ++ + ++L+
Sbjct: 241 EALDIFDQMIQEGYEPDSVALSTLL-SNISSMKFK--LHIHGWVIRHGVEWNLSIANSLI 297
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+Y KCG ++ + +F +M + +VSW ++IS S +
Sbjct: 298 VMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAE 336
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+G+ + + L+ + + GK + A +F Q+ + +WN +I A +S +A
Sbjct: 281 VIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISA---HFNSAEA 337
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMD 122
L + +M G PD TF ++ C +++G E++ L K G + + +++
Sbjct: 338 LTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIEHYACMVN 397
Query: 123 LYLKCGDVDGGRKMFDK-MRVRSVVS-WTTMISGLAASGDLDAA 164
LY + G ++ K+ K M + + + W ++ D+D A
Sbjct: 398 LYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIA 441
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 49 LMIRALTIDGSSLQAL--LLYNLM--ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
L+I S +QAL +L +L I NG D F +++ C AI G +H L
Sbjct: 20 LLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRL 79
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR--SVVSWTTMISGLAASG 159
R++ + S L+ LY G ++ ++FD+M R S +W ++ISG A G
Sbjct: 80 IPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELG 136
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 78/130 (60%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
++A +F I P F +N MIR S +AL YN M+ G PD FT+P ++KAC
Sbjct: 83 NYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKAC 142
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+I +GK++HG K G D+FVQ++L+++Y +CG+++ +F+K+ ++ SW+
Sbjct: 143 TRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWS 202
Query: 150 TMISGLAASG 159
+M+S A G
Sbjct: 203 SMVSARAGMG 212
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + GL D + L+++ G+ + + VF ++ +W+ M+ A G +
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216
Query: 63 ALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LLL+ M + ++ + AC + A+ G +HG ++ ++ VQ++L+
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y+KCG +D +F KM R+ ++++ MISGLA G+ ++A
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESA 319
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G D AL +F ++ + T++ MI L + G AL +++ MI G PD
Sbjct: 275 LVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD 334
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ-STLMDLYLKCGDVDGGRKMF 137
+ V+ AC S +++G+ V +K G L+DL + G ++ +
Sbjct: 335 HVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI 394
Query: 138 DKMRV-RSVVSWTTMIS 153
+ + ++ V W T +S
Sbjct: 395 QSIPIEKNDVIWRTFLS 411
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 86/150 (57%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L +L + +G+T HA VF+++ VF+WN+M+ G +AL LY+ M+ G
Sbjct: 131 LGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG 190
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD +TFP V+++C + G+EVH ++ G ++ V + L+ +Y KCGDV+ R
Sbjct: 191 ARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAAR 250
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD M + +SW MI+G + + +A
Sbjct: 251 KVFDGMSLTDCISWNAMIAGHFENHECEAG 280
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + D L+ + S G+ A VFS++ +W MI +G +AL
Sbjct: 323 VKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKAL 382
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y LM N PD T + AC + ++ G ++H LA GF R + V + L+++Y
Sbjct: 383 EVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMY 442
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K ++ ++F M + V+SW++MI+G
Sbjct: 443 AKSKIIEKAIEVFKYMPDKDVISWSSMIAGF 473
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L Y K+ + A+ VF + V +W+ MI + + +AL + M+ + +P+
Sbjct: 438 LVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLAD-VKPN 496
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + AC A+ ++ GKE+H ++ G + + +V + L+DLY+KCG F
Sbjct: 497 SVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFG 556
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ VVSW M++G A G D A
Sbjct: 557 AHGTKDVVSWNIMLAGFVAHGHGDIA 582
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+GL + ++ L+ + + G + A VF + +WN MI +
Sbjct: 221 VLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAG 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ + P+ T V A ++ KE+H LAVK GF+ D+ ++L+ +
Sbjct: 281 LELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQM 340
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G + +F +M R +SWT MISG +G D A
Sbjct: 341 YSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKA 381
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G++++ + LLDL G+T +A F V +WN+M+ G A
Sbjct: 523 VLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIA 582
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L +N M+ G PD+ TF ++ C + + +G E+ H + K ++ + ++D
Sbjct: 583 LSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVD 642
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
L + G + G ++M + W +++G
Sbjct: 643 LLSRVGRLTEGYNFINRMPITPDAAVWGALLNG 675
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+R L G QAL L + + PD+ + + C A E G G A A
Sbjct: 69 LRELCAHGELQQALWL---LESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHG 125
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + + + ++ + ++ G+ K+F KM R V SW M+ G +G L+ A
Sbjct: 126 TFGLRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEA 179
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Query: 18 KLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
KLL L + +G + A VF ++ R F WN +I G AL LY M G
Sbjct: 94 KLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGV 153
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PD FTFP V+KAC +I+ G+ VH V++GF+ D+FV + L+D+Y KCG + RK
Sbjct: 154 EPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARK 213
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD++ + +VSW +M++G G
Sbjct: 214 VFDQIEYKDIVSWNSMLTGYTRHG 237
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++R G + D ++ L+D+ S G A VF QI + +WN M+ T G
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHF 240
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +++ MI G+ PD ++ + I+S+ + +HG ++ G ++ + ++L+
Sbjct: 241 EALDIFDQMIQEGYEPDSVALSTLL-SNISSMKFK--LHIHGWVIRHGVEWNLSIANSLI 297
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+Y KCG ++ + +F +M + +VSW ++IS S +
Sbjct: 298 VMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAE 336
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 49 LMIRALTIDGSSLQAL--LLYNLM--ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
L+I S +QAL +L +L I NG D F +++ C AI G +H L
Sbjct: 20 LLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRL 79
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR--SVVSWTTMISGLAASG 159
R++ + S L+ LY G ++ ++FD+M R S +W ++ISG A G
Sbjct: 80 IPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELG 136
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+G+ + + L+ + + GK + A +F Q+ + +WN +I A +S +A
Sbjct: 281 VIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISA---HFNSAEA 337
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIA-SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + +M G PD TF ++ C L E GK + K G + + +++
Sbjct: 338 LTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVN 397
Query: 123 LYLKCGDVDGGRKMFDK-MRVRSVVS-WTTMISGLAASGDLDAA 164
LY + G ++ K+ K M + + + W ++ D+D A
Sbjct: 398 LYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIA 441
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
S +G D+A +F QI P F +N MIR + AL LY M+ G D FT+P
Sbjct: 30 SDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYP 89
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+ KAC + +IE+G ++HG K G D+FVQ++L+++Y KCG ++ +F+ M R
Sbjct: 90 ALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRR 149
Query: 144 SVVSWTTMISGLAASG 159
V SW+ +I+ A+ G
Sbjct: 150 DVASWSAIIAAHASLG 165
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL D + L+++ GK + + VF + V +W+ +I A G +
Sbjct: 111 IFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSEC 170
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L ++ M G RP++ V+ AC A++ G+ H ++ ++ VQ++L+D
Sbjct: 171 LSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLID 230
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+KCG ++ G +F +M ++ +S++ MI+GLA G
Sbjct: 231 MYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHG 267
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G + L +F ++ + ++++MI L + G ++AL +++ M+ G +PD
Sbjct: 228 LIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPD 287
Query: 79 KFTFPFVIKACIASLAIEKG 98
+ V+ AC + +++G
Sbjct: 288 DVVYLGVLSACNHAGLVDEG 307
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR L D + KL+ S +T+ A+ VF+Q++ P+V N +IRA + Q
Sbjct: 41 QIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQ 100
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A +++ M G D FT+PF++KAC + K +H K G S D++V + L+D
Sbjct: 101 AFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALID 160
Query: 123 LYLKCG--DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG V K+F+KM R VSW +M+ GL +G+L A
Sbjct: 161 CYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 27 GKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G + A ++F ++ P +V TW ++I G +A L + M+ +G + D
Sbjct: 261 GDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVIS 320
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ AC S + G +H + ++ + +V + L+D+Y KCG++ +F+ + +
Sbjct: 321 ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380
Query: 145 VVSWTTMISGLAASG 159
+VSW TM+ GL G
Sbjct: 381 LVSWNTMLHGLGVHG 395
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R L ++ ++ LLD+ + G A VF+ I + +WN M+ L + G +A+
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIE 402
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQS 118
L++ M G RPDK TF V+ +C + I++G ++V+ L +
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH------YG 456
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L+DL + G + K+ M + +VV W ++ ++D A
Sbjct: 457 CLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ +T++D Y +C ++ ++F+KM R+ VSW+TM+ G + +GD++ A
Sbjct: 213 QRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMA 266
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I + GLS+D + L+D C G D A+ +F ++ +WN M+ L G
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRD-AMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A L++ M + D ++ ++ + K E+ + R+ ST+
Sbjct: 202 RDARRLFDEMP----QRDLISWNTMLDGYARCREMSKAFEL----FEKMPERNTVSWSTM 253
Query: 121 MDLYLKCGDVDGGRKMFDKMRV--RSVVSWTTMISGLAASGDLDAA 164
+ Y K GD++ R MFDKM + ++VV+WT +I+G A G L A
Sbjct: 254 VMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEA 299
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 76/122 (62%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+VF+WN +I L G S++AL ++ M +P++ TFP IK+C A L + G++ H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
A+ GF D+FV S L+D+Y KCG++ R +FD++ R++VSWT+MI+G + D
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235
Query: 163 AA 164
A
Sbjct: 236 RA 237
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D + L+D + G+ + VF + V +WN +I +G S ++
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +++ M+ +G + T V+ AC S + GK +H +K G ++FV ++++D
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V+ RK FD+MR ++V SW+ M++G G A
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEA 448
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+ + +G D + L+D+ S G+ A +F +I ++ +W MI + +
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235
Query: 62 QALLLYNLMICNGFRP--------DKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFS 111
+ALLL+ + D V+ AC ++ +I +G VHG +K GF
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG--VHGFLIKRGFE 293
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+ V++TLMD Y KCG++ R++FD M R V+SW ++I+ A +G
Sbjct: 294 GDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNG 341
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ GL ++ + ++D+ GK + A F ++R +V +W+ M+ + G + +
Sbjct: 388 QVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKE 447
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
AL ++ M G +P+ TF V+ AC + +E+G
Sbjct: 448 ALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 483
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 83/134 (61%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A+ VF I+ P++ WN M R + + AL LY MI G P+ +TFPF++K+C
Sbjct: 15 YAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCA 74
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
A ++G ++HG +K G+ D++V ++L+ +Y++ ++ K+FD+ R VVS+T
Sbjct: 75 KLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTA 134
Query: 151 MISGLAASGDLDAA 164
+++G A+ G +++A
Sbjct: 135 LVTGYASRGYIESA 148
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I +G ++ +V L+D S G+ + A +F + V +WN++I T +A
Sbjct: 221 IADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEA 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLM 121
LLL+ M+ +G P+ T ++ AC AI+ G+ +H K G + ++++L+
Sbjct: 281 LLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 340
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCGD++ ++F+ M +S+ +W MI G A G +AA
Sbjct: 341 DMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAA 383
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F +I V +WN MI G+ +AL L+ M+ RPD+ T VI
Sbjct: 143 GYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVI 202
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A S +IE G++VH GF ++ + + L+D Y KCG+++ +F + + V+
Sbjct: 203 SASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVI 262
Query: 147 SWTTMISG 154
SW +I G
Sbjct: 263 SWNILIGG 270
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ S G + A VF+ + + WN MI + G + A ++
Sbjct: 328 GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIF 387
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M N +PD TF ++ AC + ++ G+ +
Sbjct: 388 SRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHI 421
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 31/192 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFT----------------- 46
++ GL+ D L+ +L++L S G HAL F + P+V++
Sbjct: 36 VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95
Query: 47 --------------WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
WN +I A+ S +AL +Y M+ G P FT V+ AC A
Sbjct: 96 RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
A++ G+ HGLAVK G + FV++ L+ +Y KCG V ++FD M + VS+T M+
Sbjct: 156 AALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMM 215
Query: 153 SGLAASGDLDAA 164
GLA SG +D A
Sbjct: 216 GGLAQSGAVDDA 227
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 86/151 (56%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L ND + L+D+ S G+ A ++F+ + V WN MI L I + +A +
Sbjct: 449 LHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFK 508
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M NG P + ++ +I +C +I +G+++H +K G+ ++++V S+L+D+Y KCG
Sbjct: 509 QMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCG 568
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++D R F+ M V+++V+W MI G A +G
Sbjct: 569 NMDDARLFFNCMIVKNIVAWNEMIHGYAQNG 599
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ +L C A +F +I P V TWN ++ + + L+
Sbjct: 347 GFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELF 406
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD+ T ++ C +E GK+VH +VK DMFV S L+D+Y KC
Sbjct: 407 RRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKC 466
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G V + +F+ M R VV W +MISGLA
Sbjct: 467 GQVGIAQIIFNMMTERDVVCWNSMISGLA 495
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +Q + LL + + G A+ +F + P+ ++ M+ L G+ AL
Sbjct: 169 VKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDAL 228
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLA--------IEKGKEVHGLAVKAGFSRDMFV 116
L+ M + R D V+ AC + A I + +H L V+ GF D V
Sbjct: 229 RLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHV 288
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+D+Y K +D K+F+ M S+VSW +++G G
Sbjct: 289 GNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLG 331
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 35/151 (23%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G +DQ + L+D+ + K D A+ VF + + +WN+++ G +A
Sbjct: 277 VVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERA 336
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + +LM +GF P++ T+ ++ +CI
Sbjct: 337 LEVLDLMQESGFEPNEVTYSNMLASCI--------------------------------- 363
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K DV R MFDK+ SV +W T++SG
Sbjct: 364 --KARDVPSARAMFDKISKPSVTTWNTLLSG 392
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + G D A L F+ + ++ WN MI +G +
Sbjct: 544 QVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEK 603
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK 97
A+ L+ M+ +PD TF V+ C S +++
Sbjct: 604 AVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDE 638
>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 386
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQ 62
+I G + + L+ KLL+L G + +F + P F +N +I++ + S+
Sbjct: 35 VIVSGSGHSRSLLTKLLNLACAAGSIIYTRQIFLSVANPDSFLFNTLIKSTSKFHKFSIY 94
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L YN M+ + P +TF ++K+C +++ GK VHG + GF D++VQ+ L+
Sbjct: 95 SLFFYNCMLLSDISPSAYTFTSIVKSCADLSSLKLGKVVHGHVLVNGFGLDVYVQAALVA 154
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K GD+ RK+FDKMR RSVVSW ++ISG +G
Sbjct: 155 CYAKSGDLGNARKVFDKMRERSVVSWNSIISGYEQNG 191
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G +A VF ++R V +WN +I +G +A+ L+ M GF PD TF V+
Sbjct: 160 GDLGNARKVFDKMRERSVVSWNSIISGYEQNGFGREAIRLFKKMREEGFEPDSATFVIVL 219
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+ G VH + G ++ + ++L+++Y +CG V R++FD M+ ++VV
Sbjct: 220 SACAQLGALSMGCWVHKYTIGHGLDLNVVLGTSLINMYTRCGTVTKAREVFDSMKEKNVV 279
Query: 147 SWTTMISGLAASG 159
+WT MISG +G
Sbjct: 280 TWTAMISGYGTNG 292
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I +GL + +L L+++ + G A VF ++ +V TW MI +G QA+
Sbjct: 239 IGHGLDLNVVLGTSLINMYTRCGTVTKAREVFDSMKEKNVVTWTAMISGYGTNGHGRQAV 298
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
L++ M G P+ TF V+ AC + +++G +V
Sbjct: 299 QLFDEMKRRGPCPNSVTFVAVLSACAHAGLVKEGWQV 335
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + +LD+ G +A +VF+ I P W MI +G+ QAL
Sbjct: 57 IKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 116
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y+ M + PD++TF +IKA A+E+G+++H +K D FV ++L+D+Y
Sbjct: 117 RIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMY 176
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG+++ ++F KM VR++ W M+ GLA G+ + A
Sbjct: 177 AKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEA 216
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 68/115 (59%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
M+ I +AL L++L+ +G + D+ T KAC + +++GK++H A+KAG
Sbjct: 1 MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
F D+ V S ++D+Y+KCGD+ +F+ + V+WT+MISG +G+ D A
Sbjct: 61 FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQA 115
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ +D + L+D+ + G + A +F ++ ++ WN M+ L G++ +
Sbjct: 156 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 215
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M +G PD+ +F ++ AC A L E + +H + G ++ S L+
Sbjct: 216 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 275
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D + G V K+ + M ++ S + G
Sbjct: 276 DALGRAGLVQEADKVIETMPFKASASINRALLG 308
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 8 GLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G +D +R+L+ G T HA LVF +I P F +N +IR + A+
Sbjct: 35 GFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVS 94
Query: 66 LYNLMICNG-------FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+Y M + RPDK TFPFV++AC A A E G +VH VKAG D FV++
Sbjct: 95 IYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRN 154
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ ++ GD+ +FD V+W+ MISG A GD+ AA
Sbjct: 155 ALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAA 200
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI GS QA+ L+ M G +PD T ++ AC S ++ G+ +HG
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Query: 104 LAVKAGFSR---DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ FSR + + L+D+Y KCG + ++F M+ ++V +W ++I GLA G
Sbjct: 303 F-LSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHG 360
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G AL VF ++ +V TWN +I L + G + +++ ++ M+
Sbjct: 317 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN 376
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKE 100
+PD+ TF V+ AC ++KG E
Sbjct: 377 VKPDEITFVAVLAACSHGGMVDKGHE 402
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G +LV KL+ S + A ++ H F WNL+I + +G +A
Sbjct: 126 IISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKA 185
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M+ G RPD FT+P V+KAC L + GKEVH + + V + L+ +
Sbjct: 186 LSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISM 245
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V R +FDK+ R VSW +MIS A+ G + A
Sbjct: 246 YGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEA 286
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA L+F + + TWN +I S +A L M+ G P+ T V+ C
Sbjct: 390 HAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCA 449
Query: 91 ASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ GKE H + + F + + + L+D+Y + G V R++FD + R +++T
Sbjct: 450 RVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYT 509
Query: 150 TMISGLAASGDLDAA 164
+MI+G G+ AA
Sbjct: 510 SMIAGYGMQGEGQAA 524
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
++ WN + G+ AL L + M G D + AC + GKE+H
Sbjct: 301 NIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIH 360
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
A+++ F V++ L+ +Y +C D+ +F M +S+++W ++ISG
Sbjct: 361 SFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISG 412
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 76/122 (62%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+VF+WN +I L G S++AL ++ M +P++ TFP IK+C A L + G++ H
Sbjct: 40 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
A+ GF D+FV S L+D+Y KCG++ R +FD++ R++VSWT+MI+G + D
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159
Query: 163 AA 164
A
Sbjct: 160 RA 161
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKACI 90
AL VF + V +WN +I +G S +++ +++ M+ +G + T V+ AC
Sbjct: 161 ALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 220
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
S + GK +H +K G ++FV ++++D+Y KCG V+ RK FD+MR ++V SW+
Sbjct: 221 HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSA 280
Query: 151 MISGLAASGDLDAA 164
M++G G A
Sbjct: 281 MVAGYGMHGHAKEA 294
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ GL ++ + ++D+ GK + A F ++R +V +W+ M+ + G + +
Sbjct: 234 QVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKE 293
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
AL ++ M G +P+ TF V+ AC + +E+G
Sbjct: 294 ALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 22 LCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FY G A F Q+ V W MI A + G +AL +++ M+ N P+
Sbjct: 204 LVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPN 263
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FT V+KAC A+E GK++HG +K F D+F+ ++L+ +Y KCG++ RK+FD
Sbjct: 264 EFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFD 323
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M+ R+ V+WT++I+G A +G + A
Sbjct: 324 GMKKRNTVTWTSIIAGYARNGQGEEA 349
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L+ S +GK A VF ++ +V +W ++ + G +AL L++ I NG R
Sbjct: 103 NLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVRA 162
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF V+ C L E G+++H VK + R++ V S L+ Y +CGD+ G F
Sbjct: 163 NGKTFVCVLNLCSKRLDFELGRQIHACIVKDNW-RNLIVDSALVCFYAQCGDLSGAFHAF 221
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D+M R VV WTTMI+ + G
Sbjct: 222 DQMPERDVVCWTTMITACSQQG 243
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 25 FYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
FY K + A V + V +W +I T G +AL M+ G P+ FT
Sbjct: 409 FYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHEPEALEFLKEMLEEGVEPNPFT 468
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ +KAC AI +GK +H K ++FV S L+++Y KCG V ++FD M
Sbjct: 469 YSSALKACAHLEAILQGKLIHSSVNKTLALSNVFVGSALINMYAKCGYVSEAIQVFDSMP 528
Query: 142 VRSVVSWTTMISGLAASG 159
R++VSW MI G A +G
Sbjct: 529 QRNLVSWKAMIVGYARNG 546
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ D + L+ + + G+ + VF ++ + TW +I +G +A
Sbjct: 290 IIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTSIIAGYARNGQGEEA 349
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ +M + T +++AC ++ + GKEVH +K ++++ STL+
Sbjct: 350 ISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKNSMQSNIYIGSTLVWF 409
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC + K+ M +R VVSWT +ISG + G A
Sbjct: 410 YCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHEPEA 450
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
F +++C + + + VH + K + +V + L+ Y + G + RK+FDKM R
Sbjct: 71 FWLQSCCT---VREVRRVHAVVFKCLDNSVTYVNNNLISAYSRFGKLVEARKVFDKMPER 127
Query: 144 SVVSWTTMISGLAASGDLDAA 164
+VVSWT +++G + G D A
Sbjct: 128 NVVSWTAVVNGYSRYGFDDEA 148
>gi|302819906|ref|XP_002991622.1| hypothetical protein SELMODRAFT_451234 [Selaginella moellendorffii]
gi|300140655|gb|EFJ07376.1| hypothetical protein SELMODRAFT_451234 [Selaginella moellendorffii]
Length = 459
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++II G D ++ L+++ + G A F + ++ +WN MI GSS
Sbjct: 163 RQIISRGFEGDTVVGTALVNMYARCGDVVTARTNFDNLCSKNIVSWNAMIAGYVQAGSSQ 222
Query: 62 QALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ALLLY M + +P D TF V+ AC I +G+E+H +GF+ D+ VQ+
Sbjct: 223 EALLLYEKMQQDEAKPKADGLTFASVLAACSNLGEISRGRELHYDVAASGFAEDLIVQNA 282
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG++ R +F+ ++ RSV+SWT+M++ A G
Sbjct: 283 LVDMYGKCGNLVESRNVFEGIKSRSVISWTSMVTAYARHG 322
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+K + GL + ++ L+ + + G + A VF+ V +W+ +I A G L
Sbjct: 62 RKTVEAGLESVTMVRNALVTMYARCGSLEDAQGVFTGTVDRDVVSWSALIAAHAQHGQDL 121
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ +Y M G D FTF ++ A + + +G+ VH + GF D V + L+
Sbjct: 122 EAIKVYRRMNLEGIEADVFTFASILSAVSSPGLLPEGRTVHRQIISRGFEGDTVVGTALV 181
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y +CGDV R FD + +++VSW MI+G +G A
Sbjct: 182 NMYARCGDVVTARTNFDNLCSKNIVSWNAMIAGYVQAGSSQEA 224
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+ +WN ++ A + +AL L+ M +PD TF + AC + A+E+G+E+H
Sbjct: 6 IVSWNAVLGAQVLHEQFREALSLFKSM---KMKPDAITFATALTACASLEALEEGREIHR 62
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG-DLD 162
V+AG V++ L+ +Y +CG ++ + +F R VVSW+ +I+ A G DL+
Sbjct: 63 KTVEAGLESVTMVRNALVTMYARCGSLEDAQGVFTGTVDRDVVSWSALIAAHAQHGQDLE 122
Query: 163 A 163
A
Sbjct: 123 A 123
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + D ++ L+D+ G + VF I+ V +W M+ A G +A+ L
Sbjct: 272 GFAEDLIVQNALVDMYGKCGNLVESRNVFEGIKSRSVISWTSMVTAYARHGHGAEAVELV 331
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLK 126
M G D T +++AC S ++ V V+ G + + LMDL +
Sbjct: 332 WRMSLEGVEADDVTLTSILQACSHSGLVDAAGSVFSTMVRDQGMQPSIEHKLCLMDLLGR 391
Query: 127 CGDVDGGRKMF---DKMRVRSVVSWTTMISG 154
G ++ + + ++ R+ SWT+ +S
Sbjct: 392 TGWIEEAEEFLASSEDLKARA-ASWTSFLSA 421
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 4 IIRYGLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ G +D +R+L+ G T HA LVF +I P F +N +IR +
Sbjct: 31 MVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPR 90
Query: 62 QALLLYNLMICNG-------FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM 114
A+ +Y M + RPDK TFPFV++AC A A E G +VH VKAG D
Sbjct: 91 DAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDA 150
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
FV++ L+ ++ GD+ +FD V+W+ MISG A GD+ AA
Sbjct: 151 FVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAA 200
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI GS QA+ L+ M G +PD T ++ AC S ++ G+ +HG
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302
Query: 104 LAVKAGFSR---DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ FSR + + L+D+Y KCG + ++F M+ ++V +W ++I GLA G
Sbjct: 303 F-LSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHG 360
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G AL VF ++ +V TWN +I L + G + +++ ++ M+
Sbjct: 317 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN 376
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKE 100
+PD+ TF V+ AC ++KG E
Sbjct: 377 VKPDEITFVAVLAACSHGGMVDKGHE 402
>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
Length = 781
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A+ + +R P F N+MIR G AL Y M+ +G RPD+FTFP V+
Sbjct: 55 GRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVV 114
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
K C +++G+ HG+ +K G D++ ++L+ Y K G V+ ++FD M VR +V
Sbjct: 115 KCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIV 174
Query: 147 SWTTMISGLAASG 159
+W TM+ G ++G
Sbjct: 175 TWNTMVDGYVSNG 187
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL +D L+ + G + A VF + + TWN M+ +G A
Sbjct: 133 VIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLA 192
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + M + D + AC ++ +GKE+HG ++ G +D+ V ++L+D
Sbjct: 193 LACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLD 252
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG+V R +F M +R+VV+W MI G A + D A
Sbjct: 253 MYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEA 294
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +L LL++ GK + + +F +I + +WN MI A +A
Sbjct: 336 VVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEA 395
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ ++ PD FT V+ A + ++ +++H + G++ + + + ++ +
Sbjct: 396 ITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHM 455
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y + GDV R++FDKM + V+SW TMI G A G
Sbjct: 456 YARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHG 491
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+GL D + LLD+ G+ +A VF+ + V TWN MI ++ +A
Sbjct: 235 VIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEA 294
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M G + + T ++ AC + + G+ VHG V+ F + +++ L+++
Sbjct: 295 FDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEM 354
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G V+ K+F K+ +++VSW MI+
Sbjct: 355 YGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G + + L++ +L + + G + +F ++ V +WN MI I G A
Sbjct: 437 IIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTA 496
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
L +++ M NG +P++ TF V+ AC S +++G L ++ G + + D
Sbjct: 497 LEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTD 556
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + GD+ + + M + W ++++ D+D A
Sbjct: 557 LLGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIA 599
>gi|302141901|emb|CBI19104.3| unnamed protein product [Vitis vinifera]
Length = 457
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 22 LCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FY G A F Q+ V W MI A + G +AL +++ M+ N P+
Sbjct: 204 LVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPN 263
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FT V+KAC A+E GK++HG +K F D+F+ ++L+ +Y KCG++ RK+FD
Sbjct: 264 EFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFD 323
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M+ R+ V+WT++I+G A +G + A
Sbjct: 324 GMKKRNTVTWTSIIAGYARNGQGEEA 349
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
Query: 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
VR++ + +GK A VF ++ +V +W ++ + G +AL L++ I NG
Sbjct: 101 VRRVHAVVFKFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGV 160
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
R + TF V+ C L E G+++H VK + R++ V S L+ Y +CGD+ G
Sbjct: 161 RANGKTFVCVLNLCSKRLDFELGRQIHACIVKDNW-RNLIVDSALVCFYAQCGDLSGAFH 219
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
FD+M R VV WTTMI+ + G
Sbjct: 220 AFDQMPERDVVCWTTMITACSQQG 243
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G + RK+FDKM R+VVSWT +++G + G D A
Sbjct: 109 FKFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEA 148
>gi|413944102|gb|AFW76751.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 248
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L KL+ S +G A VF + V +W M+ + +AL L+ M+
Sbjct: 47 DLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSGYAKNSRPQEALDLFAFML 106
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G RP++FTF ++AC + G+++H A K F+ DMFVQS LMD++L+CG V
Sbjct: 107 RSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDMFVQSALMDMHLRCGSVG 166
Query: 132 GGRKMFDKMRVRSVVSWTTMISGL 155
R++F +M + +VSW +++ G
Sbjct: 167 DARRLFAEMERKDLVSWNSLMRGF 190
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV--KAGFSRDMFVQSTLMDLYLK 126
+ + N + + ++++ + + A +GK VH A+ + D+ + + L+ Y
Sbjct: 1 MSLANAPKSAAALYSSLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSH 60
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
GDV R++FD M RSVVSWT M+SG A
Sbjct: 61 FGDVAAARRVFDGMPHRSVVSWTAMVSGYA 90
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ GLS + LL KL+ + H+ LVF ++ +VF WN +I + +
Sbjct: 48 RILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNE 107
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L+N M + PD FT + K A+ GK +HG +++ GF D V +++M
Sbjct: 108 AFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMS 167
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+Y KCG+ + RK+FD+M +R+ SW +I+G A SG+ +
Sbjct: 168 MYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCN 207
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D L L+D+ S K VF +++C +VF+W MI +G S +AL L+
Sbjct: 263 GLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLF 322
Query: 68 -NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
++ + +G P++ + V+ AC + + G+++HG AV+ + ++ + + L+D+Y K
Sbjct: 323 RDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSK 382
Query: 127 CGDVDGGRKMF-DKMRVRSVVSWTTMISGLAASG 159
CG +D R++F D + +SW++MISG G
Sbjct: 383 CGSLDSARRVFEDDSLCKDAISWSSMISGYGLHG 416
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS--- 59
K IR G +D ++ ++ + G + + VF ++ + +WN++I + G+
Sbjct: 149 KSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNF 208
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKA----GFSRDM 114
+ M + RPD +T ++ C + G+E+H VK G D+
Sbjct: 209 REETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDV 268
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L+D+Y + V GR++FD+M+ R+V SWT MI+G +GD D A
Sbjct: 269 HLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEA 318
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQA 63
+R L+N+ L L+D+ S G D A VF C +W+ MI + G +A
Sbjct: 362 VRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEA 421
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
+LLY+ M+ G RPD T ++ AC S + +G ++ + G + + + ++D
Sbjct: 422 ILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVD 481
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ + G +D M V S W ++S GDL+
Sbjct: 482 MLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLE 522
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 86/152 (56%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+ + + G D A +VF +++ V +WN+MI A G +A L+
Sbjct: 260 GLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLF 319
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G +PD F ++ AC ++ A+E K++H A+ +G D+ V + L+ +Y K
Sbjct: 320 LQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKS 379
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D R +FD+M+VR+VVSW MISGLA G
Sbjct: 380 GSIDDARVVFDRMKVRNVVSWNAMISGLAQHG 411
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Query: 5 IRYG-LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IR+G L +D + LL + G + A +F + + +W +MI A G+ +A
Sbjct: 155 IRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEA 214
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L M GF+P+ T+ ++ AC + A++ K VH A+ AG D+ V + L+ +
Sbjct: 215 YRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQM 274
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G +D R +FD+M+VR VVSW MI A G
Sbjct: 275 YAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHG 310
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ + + ++ LL + G+ A VF + +WN MI + A
Sbjct: 54 IIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDA 113
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G +P+ T+ ++KAC + A++ GKEVH G D+ V + L+ +
Sbjct: 114 MRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRM 173
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ R++FD + ++SWT MI A SG+
Sbjct: 174 YGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 6/168 (3%)
Query: 1 MQKIIRY----GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI 56
++KI R+ GL D + L+ + S G D A +VF +++ +V +WN MI L
Sbjct: 350 VKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQ 409
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMF 115
G AL ++ M +G +PD+ TF V+ AC + +++G+ + + G D+
Sbjct: 410 HGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVS 469
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
+ ++DL + G + + D M V +W ++ G+++
Sbjct: 470 HCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVE 517
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
HV T N + A+ + + LQ G D F + V+K C+ + K+VH
Sbjct: 2 HVQTANTLSEAIVVLMNRLQ----------RGLITDSFMYVEVLKRCLKQKDLMAAKQVH 51
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+K+ ++ V + L+ +Y++CG + R +FD + +S SW MI+G
Sbjct: 52 DCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAG 103
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 89/166 (53%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHAL-LVFS--QIRCPHVFTWNLMIRALTIDGSS 60
II+ G N+ L++ K S +A+ LVFS R F ++ +IRA S
Sbjct: 30 IIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYAESSQS 89
Query: 61 LQ-ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
A+ YNLM+ G P+K+ FPFV+KAC + GK VHG VK GF D+FVQ+T
Sbjct: 90 KHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNT 149
Query: 120 LMDLYLKC-GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ +Y C G ++ RK+FD+M V+WT MI G A G A
Sbjct: 150 MVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGA 195
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDL-CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++G +D + ++ + C G + A +F ++ TW MI G S
Sbjct: 135 LVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAG 194
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G PD T V+ AC A+E GK + K + + + + L+D
Sbjct: 195 AVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVD 254
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ KCGDVD +F M R++VSWT++I GLA G
Sbjct: 255 MFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHG 291
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G D AL +F + + +W +I L + G L+A+ L+ M +G
Sbjct: 248 LSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASG 307
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
P+ F ++ AC S +E+G++ + + G + ++DL + G V
Sbjct: 308 MVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEA 367
Query: 134 RKMFDKMRVR-SVVSWTTMISGLAASGDL 161
+ ++M + + + W T+IS G+L
Sbjct: 368 LEFVERMPIEPNPIIWRTLISACRVHGEL 396
>gi|449434472|ref|XP_004135020.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 575
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I GL ND ++L S +G + +L+F I+ P+ F N +I+A ++ L+A
Sbjct: 72 LITSGLFNDHFWANRVLLQASEFGDIVYTVLIFRHIKVPNTFCVNRVIKAYSLSTVPLEA 131
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +Y + NG RPD +TF + AC + G++ HG A K G M + ++L+ +
Sbjct: 132 VFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNGVDSVMVLGNSLIHM 191
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y C ++ GRK+FD+M + +VSW ++++ A GDL A
Sbjct: 192 YGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTA 232
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+V +WNLMI G+ A+ L+ M+ G R + T V+ AC S + +G+ VH
Sbjct: 243 NVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLNEGRSVH 302
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
G +A +F+ + L+D+Y KC V R++FD++ +R++V+W MI G + G+
Sbjct: 303 GFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRLMIRNLVTWNAMILGHSLHGN 360
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++R GL D +L+ S + D+A VF QI P+++TWN +IRA +
Sbjct: 57 QMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNP 116
Query: 61 LQALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
Q+LL++ M+ PDKFTFPF+IKA + GK HG+ +K D+F+ ++
Sbjct: 117 HQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNS 176
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y KCG++ G ++F R VVSW +MI+ G + A
Sbjct: 177 LIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEA 221
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ L +D ++ L+ + G+ VF V +WN MI A G +A
Sbjct: 162 VIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEA 221
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +P+ T V+ AC E G+ VH + + + + ++D+
Sbjct: 222 LELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDM 281
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ +++FDKM + +VSWTTM+ G A G+ DAA
Sbjct: 282 YTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G +LV KL+ S + A ++ H F WNL+I + +G +A
Sbjct: 200 IISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKA 259
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M+ G RPD FT+P V+KAC L + GKEVH + + V + L+ +
Sbjct: 260 LSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISM 319
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V R +FDK+ R VSW +MIS A+ G + A
Sbjct: 320 YGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEA 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA L+F + + +WN +I S +A L M+ +G P+ T V+ C
Sbjct: 464 HAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCA 523
Query: 91 ASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ GKE H + + F + + + L+D+Y + G V R++FD + R +++T
Sbjct: 524 RVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYT 583
Query: 150 TMISGLAASGDLDAA 164
+MI+G G+ AA
Sbjct: 584 SMIAGYGMQGEGQAA 598
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
++ WN + G+ AL L + M G D + AC + GKE+H
Sbjct: 375 NIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIH 434
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
A+++ F V+++L+ +Y +C D+ +F M +S++SW ++ISG
Sbjct: 435 SFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISG 486
>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 562
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L KL+ S +G A VF + V +W M+ + +AL L+ M+
Sbjct: 47 DLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSGYAKNSRPQEALDLFAFML 106
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G RP++FTF ++AC + G+++H A K F+ DMFVQS LMD++L+CG V
Sbjct: 107 RSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDMFVQSALMDMHLRCGSVG 166
Query: 132 GGRKMFDKMRVRSVVSWTTMISGL 155
R++F +M + +VSW +++ G
Sbjct: 167 DARRLFAEMERKDLVSWNSLMRGF 190
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ D + L+D+ G A +F+++ + +WN ++R AL L++
Sbjct: 145 FAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFD 204
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ +G PD FTF +KAC A + + +H +K G+ + ++L+D Y KC
Sbjct: 205 SMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAIASLIDSYAKCR 264
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+ R ++D M +VS T +ISG +
Sbjct: 265 SLSSARVIYDSMCEPDLVSSTALISGYS 292
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQ 62
II+ G ++ + + L+D + A +++ + P + + +I ++D + S
Sbjct: 241 IIKLGYWDENVAIASLIDSYAKCRSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDD 300
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ + G R D ++ C +I+ G ++H K D+ + + L+D
Sbjct: 301 AMKLFCKIHRKGLRIDAILLSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVD 360
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G+ R+ FD+M R+V+SWT++I+ A G
Sbjct: 361 MYAKSGEFLDSRRAFDEMPNRNVISWTSLITSCAQHG 397
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV--KAGFSRDMFVQSTLMDLYLK 126
+ + N + + ++++ + + A +GK VH A+ + D+ + + L+ Y
Sbjct: 1 MSLANAPKSAAALYSSLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSH 60
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
GDV R++FD M RSVVSWT M+SG A
Sbjct: 61 FGDVAAARRVFDGMPHRSVVSWTAMVSGYA 90
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G+ + F ++ +V +W +I + G A+ L+ M
Sbjct: 351 DLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFARME 410
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+G +P+ TF ++ AC S + KG E + K G S+ +DL + G +
Sbjct: 411 EDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMSKYGIDPRFKHYSSAVDLLARGGQL 470
Query: 131 D 131
+
Sbjct: 471 E 471
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 81/136 (59%)
Query: 29 TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88
T++A +F+QI P F +N+MIR + + L+A+ LY M + + D +TFPFV+KA
Sbjct: 58 TNYAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKA 117
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C + G VHG+ ++ GF + V++TL+ + KCGD++ +FD VV+W
Sbjct: 118 CTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAW 177
Query: 149 TTMISGLAASGDLDAA 164
+++I+G A GDL A
Sbjct: 178 SSLIAGYARRGDLKVA 193
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A ++F + V +WN MI + G S QAL L+N M G PD+ T ++
Sbjct: 219 GEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLL 278
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC +E GK+VH ++ + + + L+D+Y KCG++ +F + + V
Sbjct: 279 SACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDV 338
Query: 146 VSWTTMISGLAASG 159
+SW ++I G+A G
Sbjct: 339 ISWNSVIVGMALHG 352
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
LL L+D+ + G +L VF I V +WN +I + + G ++L L+ +M
Sbjct: 308 LLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRT 367
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
P++ TF V+ AC + I++G + L + + ++ ++D+ + G +
Sbjct: 368 KICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKE 427
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
K D M++ + + W T+++ GD++ A
Sbjct: 428 AAKFIDSMKIEPNAIIWRTLLAACKVHGDVELA 460
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
RD+ + ++ Y+K G+++ R +FD+ V+ VVSW MI+G G
Sbjct: 202 ERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCG 250
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 9/169 (5%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R LS + +++ +C+ +G+ HA VF+ + P++ N MI+A + A+
Sbjct: 34 VRLCLSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAV 93
Query: 65 LLYNLMI--------CNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+Y M+ GF D+FT+PF++KAC A + G++VH ++G
Sbjct: 94 EVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAI 153
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VQ++L+++Y +CGD+ RK+FD MR + VSW T+IS A G + A
Sbjct: 154 VQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKA 202
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F + V +W ++ T G A+ ++ M GF PD + V+
Sbjct: 197 GQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVL 256
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ ++ K G +++ + LM++Y KCG ++ ++F M + V+
Sbjct: 257 PACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVI 316
Query: 147 SWTTMISGLAASG 159
SW+T I GLAA G
Sbjct: 317 SWSTAIGGLAAHG 329
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH +FTWN MI A +G L +L LY M +G D TFP ++KAC G
Sbjct: 141 PHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGA 200
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAAS 158
EVHGLA+K G+ +FV ++++ +Y KC D++G R++FD+M + VVSW +MIS +++
Sbjct: 201 EVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 260
Query: 159 GD 160
G
Sbjct: 261 GQ 262
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR GLS D +L ++D+ G D+A +F I V +W MI +G + +A
Sbjct: 510 IIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 568
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++LM G PD + ++ A + A++KGKE+HG ++ GF + + STL+D+
Sbjct: 569 LELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDM 628
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG ++ R +F+ +R + +V WT+MI+ G
Sbjct: 629 YARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHG 664
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +D + L+D+ + + + +F ++ V +W +I +GS +AL
Sbjct: 410 MKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRAL 469
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + G D ++ AC I KE+H ++ G S D+ +Q+ ++D+Y
Sbjct: 470 ELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVY 528
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CG+VD +MF+ + + VVSWT+MIS +G + A
Sbjct: 529 GECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 568
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI A + +G S++AL L+ M P+ +TF ++AC S I++G +H
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 306
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+K+ + ++FV + L+ +Y + G + +F M +SW +M+SG +G
Sbjct: 307 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 362
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+ L+ + + +GK A +F + +WN M+ +G +AL Y+ M
Sbjct: 318 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 377
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G +PD +I A S G ++H A+K G D+ V ++L+D+Y K +
Sbjct: 378 GQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYM 437
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
+FDKM + VVSWTT+I+G A +G
Sbjct: 438 DCIFDKMPDKDVVSWTTIIAGHAQNG 463
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 77 PDKFT----FPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVD 131
P +F+ + V++ C + A+ +G++VH + + +F+ + L+ +Y KCG +
Sbjct: 72 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K+FD M +++ +W MI +G+
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGE 160
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + L L+D+ + G + + VF+ IR + W MI A + G A
Sbjct: 610 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAA 669
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ L+ M PD F V+ AC S + +G+
Sbjct: 670 IDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 705
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + +LD+ G +A +VF+ I P W MI +G+ QAL
Sbjct: 1134 IKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 1193
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y+ M + PD++TF +IKA A+E+G+++H +K D FV ++L+D+Y
Sbjct: 1194 RIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMY 1253
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG+++ ++F KM VR++ W M+ GLA G+ + A
Sbjct: 1254 AKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEA 1293
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 87/160 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D + L+D+ S GK + A +F + WN M+ I +AL
Sbjct: 1033 LKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKAL 1092
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++L+ +G + D+ T KAC + +++GK++H A+KAGF D+ V S ++D+Y
Sbjct: 1093 ELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMY 1152
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+KCGD+ +F+ + V+WT+MISG +G+ D A
Sbjct: 1153 IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQA 1192
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRAL-----TID 57
+I+ G + D L LL + S G A VF + TWN ++ A + D
Sbjct: 646 RIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSND 705
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G++ + L L+ L+ + + T V+K C+ S + + VHG A+K G D+FV
Sbjct: 706 GNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVS 765
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y KCG + R +FD MR R VV W M+ G G
Sbjct: 766 GALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 807
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +D + L+++ S G A VF+ ++ + +WN MI + +++
Sbjct: 931 VKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESV 990
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ ++ G +PD FT V++AC + + + +++H A+K G D FV +TL+D+
Sbjct: 991 NLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDV 1050
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y K G ++ +F + W M+ G D
Sbjct: 1051 YSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGND 1087
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P VF WN + G + A+ + M D T V+ A + +E GK+V
Sbjct: 867 PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
HG+AVK+G D+ V ++L+++Y K G R++F+ M+ ++SW +MIS A S
Sbjct: 927 HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ +D + L+D+ + G + A +F ++ ++ WN M+ L G++ +
Sbjct: 1233 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 1292
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M +G PD+ +F ++ AC A L E + +H + G ++ S L+
Sbjct: 1293 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 1352
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS 147
D + G V K+ + M ++ S
Sbjct: 1353 DALGRAGLVQEADKVIETMPFKASAS 1378
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ I++ + GK H V +G + D F+ + L+ +Y KCG + R++FD R
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686
Query: 145 VVSWTTMISGLAASGD 160
+V+W ++ AAS D
Sbjct: 687 LVTWNAILGAYAASVD 702
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL D + L+++ S G+ A L+F +R V WN+M++ G +A
Sbjct: 754 IKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAF 813
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK----EVHGLAVKAGFS---RDMFVQ 117
L++ +G RPD+F+ ++ ++ + ++GK +V A K S D+F
Sbjct: 814 QLFSEFHRSGLRPDEFSVQLILNG-VSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCW 872
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSV----VSWTTMISGLAASGDLD 162
+ + L GD G + F M ++ V+ +++ +A + DL+
Sbjct: 873 NKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLE 921
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + +LD+ G +A +VF+ I P W MI +G+ QAL
Sbjct: 419 IKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 478
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y+ M + PD++TF +IKA A+E+G+++H +K D FV ++L+D+Y
Sbjct: 479 RIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMY 538
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG+++ ++F KM VR++ W M+ GLA G+ + A
Sbjct: 539 AKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEA 578
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +D + L+++ S G A VF+ ++ + +WN MI + +++
Sbjct: 313 VKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESV 372
Query: 65 LLYNLMICNGFRPDKFTFPFVI-----KACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L+ ++ G +PD FT + KAC + +++GK++H A+KAGF D+ V S
Sbjct: 373 NLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG 432
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++D+Y+KCGD+ +F+ + V+WT+MISG +G+ D A
Sbjct: 433 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQA 477
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL D + L+++ S G+ A L+F +R V WN+M++ G +A
Sbjct: 210 IKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAF 269
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACI--ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L++ +G RPD+F+ ++ C+ + +E GK+VHG+AVK+G D+ V ++L++
Sbjct: 270 QLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVN 329
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+Y K G R++F+ M+ ++SW +MIS A S
Sbjct: 330 MYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 365
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI-----D 57
+I+ G + D L LL + S G A VF + TWN ++ A D
Sbjct: 102 RIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSND 161
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G++ + L L+ L+ + + T V+K C+ S + + VHG A+K G D+FV
Sbjct: 162 GNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVS 221
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++Y KCG + R +FD MR R VV W M+ G G
Sbjct: 222 GALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 263
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ +D + L+D+ + G + A +F ++ ++ WN M+ L G++ +
Sbjct: 518 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 577
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M +G PD+ +F ++ AC A L E + +H + G ++ S L+
Sbjct: 578 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 637
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS 147
D + G V K+ + M ++ S
Sbjct: 638 DALGRAGLVQEADKVIETMPFKASAS 663
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ I++ + GK H V +G + D F+ + L+ +Y KCG + R++FD R
Sbjct: 83 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142
Query: 145 VVSWTTMISGLAASGD 160
+V+W ++ AAS D
Sbjct: 143 LVTWNAILGAYAASVD 158
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 5/133 (3%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQ-ALLLYNLMIC---NGFRPDKFTFPFVIKACI 90
+ I P+ FTWN++I++ + Q A+LLY +I N PDK T+PFV+KAC
Sbjct: 37 ILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACA 96
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWT 149
++ +GK+VH +K GF D ++ ++L+ Y CG ++ RK+FD+M R+VVSW
Sbjct: 97 YLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWN 156
Query: 150 TMISGLAASGDLD 162
MI A GD D
Sbjct: 157 VMIDSYAKVGDYD 169
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQ 62
+++ G D + L+ + G + A VF ++ +V +WN+MI + G
Sbjct: 111 VLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDI 170
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA---GFSRDMFVQST 119
L+++ M+ + PD +T VI+AC ++ G VH +K D+ V +
Sbjct: 171 VLIMFCEMM-KVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTC 229
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y KCG ++ +++F+ M R V SW ++I G A G AA
Sbjct: 230 LVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAA 274
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L+ L+D+ G + A VF + V +WN +I + G + AL + M+
Sbjct: 223 DVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMV 282
Query: 72 -CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ-STLMDLYLKCGD 129
P+ TF V+ AC S +++G + K V L+DLY + G
Sbjct: 283 KVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGH 342
Query: 130 VDGGRKMFDKMRVRS-VVSWTTMISG 154
+ + +M ++ V W +++
Sbjct: 343 IQEALNVVSEMPIKPDAVIWRSLLDA 368
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL ++ ++ +++ C + G ++A +VF + P+ F WN MI+ + G A+
Sbjct: 46 GLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVS 105
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+Y M+ G PD++T+PF++K A++ G+E+H VK GFS ++FVQ+ L+ LY
Sbjct: 106 MYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYS 165
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G+V R +FD+ VV+W MISG S D +
Sbjct: 166 LSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+W MI + L L+ M +PD+FT ++ AC A+E G+ +
Sbjct: 257 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI 316
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K D FV + L+D+Y CG+V+ ++F+ M R +SWT +I GLA +G
Sbjct: 317 DKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAING 370
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 31/151 (20%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G S++ + L+ L S G+ A VF + V TWN+MI ++
Sbjct: 145 IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M P T V+ AC + GK VH
Sbjct: 205 MKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH--------------------- 243
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
R FDKM R VSWT MI G
Sbjct: 244 ----------RNYFDKMPERDFVSWTAMIDG 264
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G + + + L+ + S G A VF + WN +I ++G +A
Sbjct: 162 VVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEA 221
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G PD FT ++ AC+ A+ G+ VH VK G ++ + L+DL
Sbjct: 222 LTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDL 281
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+ +K+FD+M RSVVSWT++I GLA +G
Sbjct: 282 YSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNG 317
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 5 IRYGL--SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
IR+G+ N + L S A +F+QI+ P++FTWN MIR +
Sbjct: 59 IRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSP 118
Query: 63 ALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L++ M + PD TFPF+ KA + + G+ +H + V+ GF FVQ++L+
Sbjct: 119 AVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLV 178
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y G + ++F+ M R V+W ++I+G A +G + A
Sbjct: 179 HMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEA 221
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL +Q LLDL S G A VF ++ V +W +I L ++G +A
Sbjct: 263 MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEA 322
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
L L+ + G +P + TF V+ AC +++G KE +G+ +
Sbjct: 323 LKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEH------ 376
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
++DL + G V M V + V W T++ G L+
Sbjct: 377 HGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLE 423
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQI--RCPHVFTWNLMIRALTIDGS 59
II+ GL N KL++ C+ D +AL +F I + P++F WN +IRA ++ +
Sbjct: 48 IIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPT 107
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+L L++ M+ +G P+ TFP + K+C S A + K++H A+K V ++
Sbjct: 108 PTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTS 167
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y + G++ R +FDK +R VS+T +I+G + G +D A
Sbjct: 168 LIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDA 212
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F +I V +WN MI G +AL + M P++ T V+
Sbjct: 207 GHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVL 266
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++E GK + GF +++ + + L+D+Y KCG++ RK+FD M + V+
Sbjct: 267 SACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVI 326
Query: 147 SWTTMISG 154
W TMI G
Sbjct: 327 LWNTMIGG 334
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + LV L+D+ S G+ A +F + V WN MI +AL+L+
Sbjct: 289 GFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLF 348
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK----AGFSRDMFVQSTLMDL 123
+M+ P+ TF V+ AC + A++ GK VH K G ++ + ++++ +
Sbjct: 349 EVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVM 408
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ ++F M RS+ SW MISGLA +G + A
Sbjct: 409 YAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERA 449
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF + + +WN MI L ++G + +AL L+ MI GF+PD TF V+ AC
Sbjct: 418 AEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477
Query: 92 SLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WT 149
+ +E G + + G S + ++DL + G D + + M + + W
Sbjct: 478 AGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWG 537
Query: 150 TMISGLAASGDLD 162
++++ G ++
Sbjct: 538 SLLNACRIHGQVE 550
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 92/162 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ L + + +KL+ S + A+ VF+QI+ P V +N +IRA + L
Sbjct: 39 QVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLL 98
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M +G D FT+PF++KAC + + + +H K GF D+FV ++L+D
Sbjct: 99 AFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLID 158
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G++ R++FD+M R VSW T++ G +G+++AA
Sbjct: 159 SYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAA 200
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G D + L+D G+ A +F ++ +WN ++ G
Sbjct: 140 QVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNA 199
Query: 63 ALLLYNLMICN----------GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
A L+ M G + D T ++ AC S + GK VH + F
Sbjct: 200 AFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKC 259
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V + L+D+Y KCG ++ +F M + VVSW +I GLA G + A
Sbjct: 260 STPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKA 311
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G ++AL +F + V +WN +I+ L + G +AL L++ M GF PD
Sbjct: 267 LIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPD 326
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
K TF V+ AC + +++G H + G ++ ++DL + G + ++
Sbjct: 327 KVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLV 386
Query: 138 DKMRVR-SVVSWTTMI 152
M + + + W T++
Sbjct: 387 HSMPLEPNAIIWGTLL 402
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL ++ ++ +++ C + G ++A +VF + P+ F WN MI+ + G A+
Sbjct: 46 GLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVS 105
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+Y M+ G PD++T+PF++K A++ G+E+H VK GFS ++FVQ+ L+ LY
Sbjct: 106 MYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYS 165
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G+V R +FD+ VV+W MISG S D +
Sbjct: 166 LSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G S++ + L+ L S G+ A VF + V TWN+MI ++
Sbjct: 145 IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M P T V+ AC + GK VH +++ L+D+
Sbjct: 205 MKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDM 264
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y CGD+D +FD M+ R V+SWT +++G G + A
Sbjct: 265 YAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLA 305
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT----------------- 55
++L L+D+ + G D AL +F ++ V +W ++ T
Sbjct: 255 RVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPE 314
Query: 56 ---------IDG-----SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
IDG + L L+ M +PD+FT ++ AC A+E G+ +
Sbjct: 315 RDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWI 374
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K D FV + L+D+Y CG+V+ ++F+ M R +SWT +I GLA +G
Sbjct: 375 KAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAING 432
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ G + A+ +F+ + +W +I L I+G +AL +++ M+
Sbjct: 386 DSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQML 445
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDV 130
PD+ T V+ AC S ++KGK+ + + G ++ ++DL + G +
Sbjct: 446 KASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHL 505
Query: 131 DGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
++ M V+ + + W +++ D + A
Sbjct: 506 KEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMA 540
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 90/160 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R+ L ND + L+D+ S G+ A +F+++ V WN +I LTI + +A
Sbjct: 167 VRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAF 226
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M NG P + ++ +I +C +I G+++H +K G+ ++++V S L+D+Y
Sbjct: 227 DFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMY 286
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG++D R FD M ++++V+W MI G A +G D A
Sbjct: 287 AKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKA 326
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ LL C A +F +I P V TWN ++ + + L+
Sbjct: 69 GFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELF 128
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD+ T ++ +C ++ G++VH +V+ DMFV S L+D+Y KC
Sbjct: 129 RRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKC 188
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGL 155
G + R +F+KM R VV W ++ISGL
Sbjct: 189 GQIGIARSIFNKMTERDVVCWNSIISGL 216
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 35/149 (23%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G +DQ + L+D+ + + D A+ VF + + +WN++I +GS +A+
Sbjct: 1 RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ +LM GF P++ T+ ++ +CI
Sbjct: 61 VLSLMQEAGFEPNEVTYSNLLASCI----------------------------------- 85
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K DV R MFDK+ SV +W T++SG
Sbjct: 86 KARDVHSARAMFDKISRPSVTTWNTLLSG 114
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ GF D V ++L+D+Y KC ++D K+F+ + ++VSW +I+G G
Sbjct: 1 RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEG 53
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + G D A L F + ++ WN MI +G +
Sbjct: 266 QVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDK 325
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
A+ L+ M+ +PD TF V+ C S ++K
Sbjct: 326 AVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 361
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHAL---LVFSQIRCPHVFTWNLMIRALTIDGS 59
+I+ GL ND +LL + + + + L+F WN +IR + S
Sbjct: 52 QILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDS 111
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A+ L+ M G RP+ TFPF++KAC +++GK+ H +A+K G D++V++T
Sbjct: 112 PQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNT 171
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L++ Y C + G RK+FD+M R++VSW +I+ + D A
Sbjct: 172 LINFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEA 216
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 22 LCSFYG---KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FYG + A VF ++ + +WN +I A + +A+ + M +GF PD
Sbjct: 172 LINFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPD 231
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T ++ AC + G+ VH V G ++ + + +D+Y K GDV R +F+
Sbjct: 232 ETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFN 291
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ +SV +W+ MI GLA G + A
Sbjct: 292 CLKQKSVWTWSAMILGLAQHGFANEA 317
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G+ + L +D+ + G A VF+ ++ V+TW+ MI L G + +
Sbjct: 257 QVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANE 316
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLM 121
A+ L+ M + P+ TF V+ AC + ++K L + G M +++
Sbjct: 317 AIELFTNMTSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMV 376
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASG 159
D+ + G V ++ M V + W T++S A SG
Sbjct: 377 DVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLS--ACSG 413
>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+Y L D + L L S G D ++ VF I +V +W +I A +G +
Sbjct: 201 VIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMG 260
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +N M+ +P++FT V+ C +LA+ G+ VH L++K G+ ++ + +++M L
Sbjct: 261 LRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYL 320
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
YLKCG +D + +F KM ++V+W MISG A + DL
Sbjct: 321 YLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDL 358
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G D A ++F ++ ++ TWN MI + S ++AL ++ + G
Sbjct: 325 GHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGK 384
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FT V+ C A+ +G+++H +K+G+ D+ V + L+++Y KCG + K
Sbjct: 385 KPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASK 444
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
F +M R+++SWTTMI+GLA G + A
Sbjct: 445 AFVEMSTRTLISWTTMITGLAQHGHSEQA 473
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G D ++ L+++ + G +A +F + +V W ++ + A
Sbjct: 100 IIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIA 159
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M+ +G P +T + AC A +I+ GK++H +K D + + L L
Sbjct: 160 IDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSL 219
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G +D +F + ++V+SWT +IS +G
Sbjct: 220 YSKLGSLDSSINVFQSIGEKNVISWTAVISACGENG 255
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 48/80 (60%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ C ++ + + +H +K G +D+ V ++L+++Y KCG + RK+FD + R+
Sbjct: 80 LLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRN 139
Query: 145 VVSWTTMISGLAASGDLDAA 164
VV+WT +++G + + A
Sbjct: 140 VVAWTALMTGYVQNSQPNIA 159
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G +D ++ L+++ S G A F ++ + +W MI L G S Q
Sbjct: 413 QTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAFVEMSTRTLISWTTMITGLAQHGHSEQ 472
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
AL L+ M G RP++ TF V+ AC S +++
Sbjct: 473 ALQLFEDMRLAGVRPNQITFVGVLAACCHSGMVDEA 508
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G T +A VF + +V TW +MI L G +A L+ M+ G PD T+ ++
Sbjct: 484 GNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSIL 543
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++ A+E KEVH AV AG D+ V + L+ +Y KCG VD R++FD M R V
Sbjct: 544 SACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVY 603
Query: 147 SWTTMISGLAASG-DLDA 163
SWT MI GLA G LDA
Sbjct: 604 SWTVMIGGLAQHGRGLDA 621
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G +D + L+++ G D A L+F ++ +V +W +MI L G +A
Sbjct: 56 IIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 115
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M GF P+ +T+ ++ A ++ A+E KEVH AV AG + D+ V + L+ +
Sbjct: 116 FHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHM 175
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G +D R +FD M R + SWT MI GLA G
Sbjct: 176 YAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHG 211
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A L+F ++ +V TWN MI + +AL L+ M GF PD TF ++
Sbjct: 384 GSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNIL 443
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A + A+E KEVH A+ AG D+ V + L+ +Y KCG+ +++FD M R+V
Sbjct: 444 SANVGEEALEWVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVT 502
Query: 147 SWTTMISGLAASG 159
+WT MISGLA G
Sbjct: 503 TWTVMISGLAQHG 515
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G +D + L+ + + G D A LVF + V +WN MI L +G +A
Sbjct: 262 KAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFT 321
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M GF PD T+ ++ +++ A E KEVH AV+ G D+ V S + +Y+
Sbjct: 322 IFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYI 381
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+CG +D + +FDK+ VR+V +W MI G+A
Sbjct: 382 RCGSIDDAQLIFDKLAVRNVTTWNAMIGGVA 412
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 72/110 (65%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
MI G + A+ +Y+ M G +P++ T+ ++KAC + ++++ GK++H +++G
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
F D+ V++ L+++Y+KCG +D + +FDKM R+V+SWT MI GLA G
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYG 110
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL+ D + L+ + + G D A +VF + +F+W +MI L G +A
Sbjct: 158 VNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAF 217
Query: 65 LLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+ M G P+ T+ ++ A ++ A+E KEVH A KAGF D+ V + L+
Sbjct: 218 SLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIH 277
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG +D R +FD M R V+SW MI GLA +G
Sbjct: 278 MYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNG 314
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL +D + L+ + + G D A VF + V++W +MI L G L AL
Sbjct: 563 VNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDAL 622
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M GF+P+ ++F V+ AC + +++G ++ L G M + ++DL
Sbjct: 623 DLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDL 682
Query: 124 YLKCGDVDGGRKMFDKMRVRSV-VSWTTMISGLAASGDLDAA 164
+ G ++ + M + W ++ G+L+ A
Sbjct: 683 LGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMA 724
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 82/130 (63%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G T+ A +F ++ V++WNL++ +A L+ M+ +G +PDK+TF +++
Sbjct: 153 GNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYML 212
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC + ++KG E+ L + AG+ D+FV + L+++++KCG VD K+F+ + R ++
Sbjct: 213 NACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272
Query: 147 SWTTMISGLA 156
+WT+MI+GLA
Sbjct: 273 TWTSMITGLA 282
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ G D + L+++ G D AL VF+ + + TW MI L QA
Sbjct: 231 ILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQA 290
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ +M G +PDK F ++KAC A+E+GK VH + G +++V + L+ +
Sbjct: 291 CNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSM 350
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ ++F+ ++ R+VVSWT MI+G A G ++ A
Sbjct: 351 YTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEA 391
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 85/157 (54%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + + LL + + G + AL VF+ ++ +V +W MI G +A L +
Sbjct: 336 GLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFF 395
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N MI +G P++ TF ++ AC A+++G+++H +KAG+ D V++ L+ +Y KC
Sbjct: 396 NKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKC 455
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + R +F+++ ++VV+W MI+ D A
Sbjct: 456 GSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNA 492
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G D + LL + + G A VF +I +V WN MI A
Sbjct: 432 RIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDN 491
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ + ++ G +PD TF ++ C + A+E GK V L ++AGF D+ +++ L+
Sbjct: 492 AVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVS 551
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+++ CGD+ +F+ M R +VSW T+I+G G+
Sbjct: 552 MFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGE 589
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G +D + L+ + G A+ +F+ + + +WN +I G + A
Sbjct: 534 IIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFA 593
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +M +G +PD+ TF ++ AC + A+ +G+ +H L +A D+ V + L+ +
Sbjct: 594 FDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISM 653
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D +F + ++V SWT+MI+G A G
Sbjct: 654 YTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHG 689
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 54/107 (50%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N + L+ G +A+L+ + + + T+ +++ CI + G+ +H
Sbjct: 73 NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ D+F+ + L+ +Y KCG+ + +++FD+M + V SW ++ G
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGG 179
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I L D ++ L+ + + G D A LVF + +V++W MI G +A
Sbjct: 635 ITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEA 694
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQSTLM 121
L L+ M G +PD TF + AC + I++G +H F+ + M ++
Sbjct: 695 LELFCQMQQEGVKPDWITFVGALSACAHAGLIKEG--LHHFESMKDFNIEPRMEHYGCMV 752
Query: 122 DLYLKCGDVDGGRKMFDKMRVR 143
DL+ + G + + +KM+V+
Sbjct: 753 DLFGRAGLLHEAVEFINKMQVK 774
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 90/160 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R+ L ND + L+D+ S G+ A +F+++ V WN +I LTI + +A
Sbjct: 151 VRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAF 210
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M NG P + ++ +I +C +I G+++H +K G+ ++++V S L+D+Y
Sbjct: 211 DFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMY 270
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG++D R FD M ++++V+W MI G A +G D A
Sbjct: 271 AKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKA 310
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ LL C A +F +I P V TWN ++ + + L+
Sbjct: 53 GFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELF 112
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD+ T ++ +C ++ G++VH +V+ DMFV S L+D+Y KC
Sbjct: 113 RRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKC 172
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGL 155
G + R +F+KM R VV W ++ISGL
Sbjct: 173 GQIGIARSIFNKMTERDVVCWNSIISGL 200
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 35/127 (27%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ D A+ VF + + +WN++I +GS +A+ + +LM GF P++ T+ ++
Sbjct: 7 EMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLA 66
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
+CI K DV R MFDK+ SV +
Sbjct: 67 SCI-----------------------------------KARDVHSARAMFDKISRPSVTT 91
Query: 148 WTTMISG 154
W T++SG
Sbjct: 92 WNTLLSG 98
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + G D A L F + ++ WN MI +G +
Sbjct: 250 QVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDK 309
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
A+ L+ M+ +PD TF V+ C S ++K
Sbjct: 310 AVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 345
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++IR G S D +V +LL CS D+A +F P+V+ + +I G+
Sbjct: 71 QLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFD 130
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY+ M+ + PD + ++KAC + LA+ +G+EVH A+K G S + V+ +M+
Sbjct: 131 AIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIME 190
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG++ R++F++M VV+ T MIS + G ++ A
Sbjct: 191 LYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEA 231
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VFS++R W MI + +AL + M RP++FT V+
Sbjct: 226 GLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVL 285
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ VH K ++FV + L+++Y +CG +D + +FD+M+ R V+
Sbjct: 286 SACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVI 345
Query: 147 SWTTMISGLAASG 159
++ TMISGL+ +G
Sbjct: 346 TYNTMISGLSMNG 358
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G D A VF +++ V T+N MI L+++G S QA+ L+ +MI RP
Sbjct: 319 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPT 378
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC ++ G K H + G + ++DL + G ++ +
Sbjct: 379 NVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLI 438
Query: 138 DKMRV 142
M++
Sbjct: 439 RTMKM 443
>gi|414868050|tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 71/116 (61%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +W MI A G S +AL ++ M+ GFRP++FT +KAC A+ GK++HG
Sbjct: 6 VISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHG 65
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VK + D+ V S L+ +Y +CG+V + +FDKM R+ ++WT+MISG A SG
Sbjct: 66 AIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSG 121
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 74/138 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ +A + + W MI G +++AL + M+ +G P+ +T+ +
Sbjct: 191 GEHTYATRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSAL 250
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ G+ +HG+ K ++FV +L+D+Y++CG VD R++FD M ++V
Sbjct: 251 KACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLV 310
Query: 147 SWTTMISGLAASGDLDAA 164
+W MI+G +G + A
Sbjct: 311 TWKVMITGFTQNGRSEEA 328
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLD--------LCSFY---GKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G +V+KL L + Y G+ A VF ++ + TW M
Sbjct: 54 EKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSM 113
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G +A+LL+ M + T ++ AC + +I GKE+H +K
Sbjct: 114 ISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCM 173
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ + STL+ Y + G+ ++ + M R V+WT MISG
Sbjct: 174 EENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMISG 217
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ GK D A VF + ++ TW +MI T +G S +AL LM G+ D
Sbjct: 284 LIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQNGRSEEALKYMFLMQQEGYVVD 343
Query: 79 KFTFPFVIKAC 89
+F V+ +C
Sbjct: 344 EFVLSTVLSSC 354
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L+ LL + G+ A VF I + WN MI +G S +A+ L++ M
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G RPDK T V+ AC A A+E G E+ G A + G +++V + L+D+Y KCGD+D
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++F KM ++V SW +I GLA +G D A
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEA 440
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL+ V L+ + S+ A VF I V +WN M++A G + +
Sbjct: 180 KIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGR 239
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G P+ T V+ AC + G+ V + A D V S L+ +Y
Sbjct: 240 MFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMY 299
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++ R++FD + + +V+W MI+G A +G
Sbjct: 300 EKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNG 334
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
P F++N+ IR +L L+ M+ + RPD +T PF++ A A +
Sbjct: 115 APTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARA 173
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
H L K G + +L+ +Y D RK+FD + R VVSW M+ G
Sbjct: 174 AHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVG 232
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL ++ + L+D+ + G D A+ VF ++ C +V +WN +I L +G +A+
Sbjct: 383 RRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQ 442
Query: 66 LYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGK 99
+ LM G +PD TF V+ AC+ + ++ GK
Sbjct: 443 HFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGK 477
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L+ LL + G+ A VF I + WN MI +G S +A+ L++ M
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G RPDK T V+ AC A A+E G E+ G A + G +++V + L+D+Y KCGD+D
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++F KM ++V SW +I GLA +G D A
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEA 440
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL+ V L+ + S+ A VF I V +WN M++A G + +
Sbjct: 180 KIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGR 239
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G P+ T V+ AC + G+ V + A D V S L+ +Y
Sbjct: 240 MFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMY 299
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++ R++FD + + +V+W MI+G A +G
Sbjct: 300 EKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNG 334
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
P F++N+ IR +L L+ M+ + RPD +T PF++ A A +
Sbjct: 115 APTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARA 173
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
H L K G + +L+ +Y D RK+FD + R VVSW M+ G
Sbjct: 174 AHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVG 232
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL ++ + L+D+ + G D A+ VF ++ C +V +WN +I L +G +A+
Sbjct: 383 RRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQ 442
Query: 66 LYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGK 99
+ LM G +PD TF V+ AC+ + ++ GK
Sbjct: 443 HFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGK 477
>gi|302767314|ref|XP_002967077.1| hypothetical protein SELMODRAFT_87452 [Selaginella moellendorffii]
gi|300165068|gb|EFJ31676.1| hypothetical protein SELMODRAFT_87452 [Selaginella moellendorffii]
Length = 653
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G++ D L+ LL L + G+TD A VFS+IR V W ++ AL DG S A
Sbjct: 363 LLSSGVTLDDPLLTALLGLYAKCGRTDDARRVFSEIREKGVVPWTALVSALAADGRSSDA 422
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M G RP+++TF I+A + L I G+ +H A AG D FV +T+M +
Sbjct: 423 VAALRRMELEGVRPNEYTFVAAIEAA-SQLGIAHGRSLHARATSAGLDSDPFVANTVMAM 481
Query: 124 YLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159
Y CG + R +FD M R++VSW MI LA G
Sbjct: 482 YASCGSIAEARAVFDGMGHRRNLVSWNCMIEALARHG 518
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + ++ LL++ G+ D A +F + + WN+MI A + G+ +AL +
Sbjct: 264 GHGSSPIVAAALLNMYGKLGELDRAREIFHSLPERNAVMWNVMIAASSQAGAIHEALGFF 323
Query: 68 NLMICNGF-RPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
M +G RPD TF +I AC A + + +H + +G + D + + L+ LY
Sbjct: 324 WAMNLDGAARPDGSTFTSIISACAAGGVPPDLAVRIHAALLSSGVTLDDPLLTALLGLYA 383
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG D R++F ++R + VV WT ++S LAA G
Sbjct: 384 KCGRTDDARRVFSEIREKGVVPWTALVSALAADG 417
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT--IDGSSLQAL 64
+GLS D+ L L D+ G+ D + +F I +VF+W ++I A + +D +AL
Sbjct: 50 HGLSQDRFLANCLADMYGKCGRPDESRKIFDAIADKNVFSWTILIAAFSESVD-RRWEAL 108
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M +G P+ TF V+ AC ++ +H G ++ V + L++ Y
Sbjct: 109 HLLRFMDQSGVAPNAATFVSVLVACSELRCLDAVIALHARIASLGLDLEIVVGTALVNAY 168
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG VD + F KM +++ + WT +I+ A +G A
Sbjct: 169 GKCGSVDRAKNAFAKMPIKNSICWTAVITANAQNGHFGPA 208
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
T+ V++ C A+E+G+ +H K G S+D F+ + L D+Y KCG D RK+FD
Sbjct: 22 TYAAVLRRCADDRALEQGQRIHDHIRKFHGLSQDRFLANCLADMYGKCGRPDESRKIFDA 81
Query: 140 MRVRSVVSWTTMISGLAASGD 160
+ ++V SWT +I+ + S D
Sbjct: 82 IADKNVFSWTILIAAFSESVD 102
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I GL + ++ L++ G D A F+++ + W +I A +G
Sbjct: 148 RIASLGLDLEIVVGTALVNAYGKCGSVDRAKNAFAKMPIKNSICWTAVITANAQNGHFGP 207
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS----------LAIEKGKEVHGLAVKAGFSR 112
A+ LY M+ G +PD+ TF + AC +S + ++ + +G
Sbjct: 208 AMELYERMVLEGLKPDRVTFVSALDACASSPRSPPPRYRAVVAQRIASLAAAVAASGHGS 267
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V + L+++Y K G++D R++F + R+ V W MI+ + +G + A
Sbjct: 268 SPIVAAALLNMYGKLGELDRAREIFHSLPERNAVMWNVMIAASSQAGAIHEA 319
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQALLL 66
GL +D + ++ + + G A VF + ++ +WN MI AL G SL++L L
Sbjct: 467 GLDSDPFVANTVMAMYASCGSIAEARAVFDGMGHRRNLVSWNCMIEALARHGHSLESLAL 526
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS------TL 120
Y+ M +G P TF V+ AC +E G F RD +Q+ +
Sbjct: 527 YSEMELDGVPPSAATFVSVLAACSHVGEVELGYHYF-----VAFRRDYGIQAEAEHIGCV 581
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSV-VSWTTMISGLAASGD 160
+DL + G +D + + SW ++ GD
Sbjct: 582 VDLLGRAGWLDSAESFIQSLPAADLSSSWAVLLGACKTHGD 622
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L+ LL + G+ A VF I + WN MI +G S +A+ L++ M
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G RPDK T V+ AC A A+E G E+ G A + G +++V + L+D+Y KCGD+D
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++F KM ++V SW +I GLA +G D A
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEA 440
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL+ V L+ + S+ A VF I V +WN M++A G + +
Sbjct: 180 KIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGR 239
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G P+ T V+ AC + G+ V + A D V S L+ +Y
Sbjct: 240 MFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMY 299
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++ R++FD + + +V+W MI+G A +G
Sbjct: 300 EKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNG 334
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
P F++N+ IR +L L+ M+ + RPD +T PF++ A A +
Sbjct: 115 APTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARA 173
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
H L K G + +L+ +Y D RK+FD + R VVSW M+ G
Sbjct: 174 AHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVG 232
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL ++ + L+D+ + G D A+ VF ++ C +V +WN +I L +G +A+
Sbjct: 383 RRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQ 442
Query: 66 LYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGK 99
+ LM G +PD TF V+ AC+ + ++ GK
Sbjct: 443 HFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGK 477
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D L+ L+ + G+ A VF I V WN MI +G S +A+ L+
Sbjct: 260 GMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLF 319
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M G PDK T V+ AC A A+E G E+ G A G +++V + L+D+Y KC
Sbjct: 320 HNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKC 379
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GD+D ++F KMR ++V SW +I GLA +G D A
Sbjct: 380 GDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEA 416
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L++ V L+ + S+ A VF+ I V +WN M++A G + + +
Sbjct: 159 LNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLR 218
Query: 69 LMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G P+ T V+ AC + G+ V + AG D V S L+ +Y KC
Sbjct: 219 DMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKC 278
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G++ R++FD + + VV+W MI+G A +G
Sbjct: 279 GEIAEARRVFDSIIDKDVVAWNAMITGYAQNG 310
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL N+ + L+D+ + G D A+ VF ++RC +V +WN +I L +G +A+ +
Sbjct: 361 GLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHF 420
Query: 68 NLMIC-NGFRPDKFTFPFVIKACIASLAIEKGK 99
LM +G +PD TF V+ AC+ + ++ GK
Sbjct: 421 ELMRNEDGLKPDDITFIGVLSACVHAGLVKDGK 453
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G ND + L+D+ + +TD+++ VF + WN ++ +GS +AL
Sbjct: 198 VRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEAL 257
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G RP TF +I C ++ GK++H ++ GF ++F+ S+L+D+Y
Sbjct: 258 GIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMY 317
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG++ +FD+M VVSWT MI G A G A
Sbjct: 318 CKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREA 357
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 5 IRYGLSNDQLLVRKLLDL-----CSFYGKT--------------DHALLVFSQIRCPHVF 45
IR G D+ LL+L CS+ T + VF ++ V
Sbjct: 78 IRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDVV 137
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN ++ +G +AL+L M GFRPD FT V+ +++G EVHG A
Sbjct: 138 SWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGFA 197
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V+ GF D+FV S+L+D+Y C D K+FD + VR + W ++++G A +G ++ A
Sbjct: 198 VRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEA 256
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G ++ + L+D+ G+ A +F ++ P V +W MI + G + +A
Sbjct: 298 VIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREA 357
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L+L+ M +P+ TF V+ AC + ++KG K ++ G + + L D
Sbjct: 358 LVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALAD 417
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ + G++D KM+++ S W+T++
Sbjct: 418 ILGRAGELDEAYNFISKMQIKPTASVWSTLL 448
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPD-KFTFPFVIKACIASLAIEKGK 99
P +W IR G A+ L+ + C R + P +K+C A G
Sbjct: 12 PPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGA 71
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLY--LKCGDVD-------GG----------RKMFDKM 140
+H LA+++G D F + L++LY L C + GG RK+FD+M
Sbjct: 72 SLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEM 131
Query: 141 RVRSVVSWTTMISGLAASG 159
R VVSW T++ G A G
Sbjct: 132 IERDVVSWNTLVLGCAEEG 150
>gi|356507622|ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Glycine max]
Length = 698
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ ++G + +L L+D+ G A +F +I P+ TWN+++R G + +A
Sbjct: 189 VTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEIPQPNAVTWNVIVRRYLDAGDAKEA 248
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +++ M + RP FTF + AC + A+ +G ++HG+ VK G D V S+L++
Sbjct: 249 VFMFSRMFSTSAVRPMNFTFSNALVACSSVSALREGVQIHGVVVKLGLREDNVVSSSLVN 308
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+KCG ++ G ++FD++ R +V WT+++SG A SG
Sbjct: 309 MYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSG 345
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 70/130 (53%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ P +WN +I A + G + L+ M +GF P + TF V+ +C AS
Sbjct: 119 LFDEMPQPDGGSWNALITAYSQLGFPNETFSLFLCMTRSGFFPTEVTFASVLASCAASSE 178
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ K+VHGL K GF ++ + S+L+D+Y KCG + R+MF ++ + V+W ++
Sbjct: 179 LLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEIPQPNAVTWNVIVRR 238
Query: 155 LAASGDLDAA 164
+GD A
Sbjct: 239 YLDAGDAKEA 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
I R+G +D L LLD+ G + + F+Q+ R V +WN ++ + S
Sbjct: 423 IYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFNQMSDRRDRV-SWNALLASYGQHQLSE 481
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
QAL +++ M +P ++TF ++ AC + + GK++HG ++ GF D ++ L+
Sbjct: 482 QALTMFSKMQWET-KPTQYTFVTLLLACANTFTLCLGKQIHGFMIRHGFHIDTVTRTALV 540
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y KC ++ ++ + R V+ W T+I G
Sbjct: 541 YMYCKCRCLEYAIEVLKRAVSRDVIIWNTIIMG 573
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 12 DQLLVRKLL---DLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
DQL R L+ + S Y GKT A F ++ +V +WN M+ T +AL
Sbjct: 324 DQLGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPERNVISWNAMLAGYTQCSEWSKALD 383
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LM+ D T ++ E GK+VHG + GF D+ + + L+D+Y
Sbjct: 384 FVYLMLDVIKDVDHVTLGLLLNVSAGISDHEMGKQVHGYIYRHGFHSDLRLSNALLDMYG 443
Query: 126 KCGDVDGGRKMFDKMR-VRSVVSWTTMISG 154
KCG+++ R F++M R VSW +++
Sbjct: 444 KCGNLNSTRVWFNQMSDRRDRVSWNALLAS 473
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+G D + L+ + ++A+ V + V WN +I + +A
Sbjct: 524 MIRHGFHIDTVTRTALVYMYCKCRCLEYAIEVLKRAVSRDVIIWNTIIMGCVHNHKGKEA 583
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ +M G +PD TF ++ ACI +E G
Sbjct: 584 LELFVIMEAEGIKPDHVTFKGILLACIEEGLVEFG 618
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%)
Query: 40 RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ P+ F N M+RA G S +A+ LY M G + FT+PFV+K C + L G+
Sbjct: 93 QAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGE 152
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
VHG V+ GF D+FV++ L+D+Y KCG++ ++FD+M +R VV WT MI+
Sbjct: 153 VVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMIT 206
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G +D + L+D+ + G+ A VF ++ V W MI L+
Sbjct: 157 QVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLK 216
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK---EVHGLAVKAGFSRDMFVQST 119
AL+L+ M GF D+ T I A + G+ VHG AV GF D+ V ++
Sbjct: 217 ALMLFRKMQEEGFLGDEIT---AISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNS 273
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ +Y KCG+V+ R +FD+M R+ +SW +M+SG +G
Sbjct: 274 IVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNG 313
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A LVF ++ + +WN M+ T +G AL L+N M + P+ T ++
Sbjct: 282 GNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMV 341
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RS 144
AC + G+++H + + D +++ +MD+Y+KCGD+D +MF+ + R
Sbjct: 342 SACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERD 401
Query: 145 VVSWTTMISGLAASG 159
V SW +ISG G
Sbjct: 402 VSSWNVLISGYGVHG 416
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSSL 61
+I + D L ++D+ G D A+ +F+ V +WN++I + G
Sbjct: 360 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 419
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ M G P+ TF ++ AC + I++G++ K +M + ++
Sbjct: 420 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMV 479
Query: 122 DLYLKCGDVDGGRKMFDKMRVR 143
D+ + G ++ ++ K+ R
Sbjct: 480 DMLGRAGFLNEAFRLIKKIPSR 501
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH +FTWN MI A +G L +L LY M +G D TFP ++KAC G
Sbjct: 177 PHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGA 236
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAAS 158
EVHGLA+K G+ +FV ++++ +Y KC D++G R++FD+M + VVSW +MIS +++
Sbjct: 237 EVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 296
Query: 159 G 159
G
Sbjct: 297 G 297
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR GLS D +L ++D+ G D+A +F I V +W MI +G + +A
Sbjct: 546 IIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 604
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++LM G PD + ++ A + A++KGKE+HG ++ GF + + STL+D+
Sbjct: 605 LELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDM 664
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG ++ R +F+ +R + +V WT+MI+ G
Sbjct: 665 YARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHG 700
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +D + L+D+ + + + +F ++ V +W +I +GS +AL
Sbjct: 446 MKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRAL 505
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + G D ++ AC I KE+H ++ G S D+ +Q+ ++D+Y
Sbjct: 506 ELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVY 564
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CG+VD +MF+ + + VVSWT+MIS +G + A
Sbjct: 565 GECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 604
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI A + +G S++AL L+ M P+ +TF ++AC S I++G +H
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 342
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+K+ + ++FV + L+ +Y + G + +F M +SW +M+SG +G
Sbjct: 343 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 398
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+ L+ + + +GK A +F + +WN M+ +G +AL Y+ M
Sbjct: 354 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 413
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G +PD +I A S G ++H A+K G D+ V ++L+D+Y K +
Sbjct: 414 GQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYM 473
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
+FDKM + VVSWTT+I+G A +G
Sbjct: 474 DCIFDKMPDKDVVSWTTIIAGHAQNG 499
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 77 PDKFT----FPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVD 131
P +F+ + V++ C + A+ +G++VH + + +F+ + L+ +Y KCG +
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K+FD M +++ +W MI +G+
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGE 196
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + L L+D+ + G + + VF+ IR + W MI A + G A
Sbjct: 646 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAA 705
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ L+ M PD F V+ AC S + +G+
Sbjct: 706 IDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 741
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ L + +LD+ + G+ D A VF++I WN MI + + +G +A
Sbjct: 387 IIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEA 446
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G R D + + AC A+ GKE+HGL +K D++ +S+L+D+
Sbjct: 447 INLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDM 506
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
Y KCG+++ R++FD+M+ R+ VSW ++IS GDL
Sbjct: 507 YAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDL 544
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN MIR T+ G ALL Y M+ G PDK+TFP+V+KAC +++ GK VH
Sbjct: 25 AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETV 84
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
G D+FV S+L+ LY + G + + +FD + + V W M++G +GD
Sbjct: 85 NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGD 139
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+ L + G A +F I WN+M+ +G S A+ ++
Sbjct: 88 GLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIF 147
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M + +P+ TF V+ C + ++ G ++HG+AV G D V +TL+ +Y KC
Sbjct: 148 LEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKC 207
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ RK+FD +VSW +ISG +G + A
Sbjct: 208 QCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEA 244
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN +I +G +A L+ MI G +PD TF + L+++ KE+HG
Sbjct: 227 SWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYI 286
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ D+F++S L+D+Y KC DV+ +K+ + V TTMISG +G
Sbjct: 287 IRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR+ + D L L+D+ + A + Q MI ++G + +A
Sbjct: 286 IIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEA 345
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + ++ +P TF + A A+ GKE+HG +K V S ++D+
Sbjct: 346 LEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDM 405
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D ++F+++ + + W +MI+ + +G
Sbjct: 406 YAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG 441
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ L +D L+D+ + G + + VF +++ + +WN +I A G +
Sbjct: 488 MIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKEC 547
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M+ NG +PD TF +I AC + +++G + H + + G M + + D
Sbjct: 548 LALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVAD 607
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++ + G +D + + M W T++ G+++ A
Sbjct: 608 MFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELA 650
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 85/160 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL D + L+D+ S G + A VF ++ + WN +I + G S +AL
Sbjct: 260 IKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEAL 319
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY+ M +G + D FTF +I+ C ++ + K+VH V+ GF D+ + L+D Y
Sbjct: 320 DLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFY 379
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G VD R +FD+M R+++SW +I+G G + A
Sbjct: 380 SKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEA 419
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 80/157 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G DQ + ++L + G A +F ++ + +W +I G+ ++A L+
Sbjct: 162 GFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLF 221
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
LM + TF +I+A I G+++H A+KAG +D+FV L+D+Y KC
Sbjct: 222 ILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKC 281
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G ++ +FD+M +++V W ++I+G A G + A
Sbjct: 282 GSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEA 318
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
+GF T+ +I ACI +I K + V GF D ++++ ++ +++KCG +
Sbjct: 126 DGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMID 185
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASGD 160
++FD+M R+ VSW T+ISG SG+
Sbjct: 186 ACRLFDEMPARNAVSWGTIISGYVDSGN 213
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D + L+D S +GK D A VF ++ C ++ +WN +I G +A
Sbjct: 360 LVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEA 419
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ------ 117
+ ++ M+ G P+ TF V+ AC S E+G E+ +RD V+
Sbjct: 420 IDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIF-----QSMTRDHKVKPRAMHF 474
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ +++L + G +D + K + + W ++ G+L+
Sbjct: 475 ACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLE 520
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 76/134 (56%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA +F +I P F +N ++RA + +AL L+ ++ G P++FT PFV+KAC
Sbjct: 66 HARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACT 125
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
A+E HG+ VK GF + +FV + L+ + G + R+ F +M R+VVSW T
Sbjct: 126 TVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNT 185
Query: 151 MISGLAASGDLDAA 164
MI G A +G++ A
Sbjct: 186 MIGGYAQAGEVSEA 199
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + LL + G + F ++ +V +WN MI G +A
Sbjct: 140 VVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEA 199
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G D FT ++ AC + +E G+ VH + +G D + + L+D+
Sbjct: 200 CALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDM 259
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
Y KCGD+ + FD M +++VV+WT+M+ A G +DA
Sbjct: 260 YGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDA 299
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G D F Q+ ++ +WN MI G + L LYN M G PD+FT V
Sbjct: 294 HGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGV 353
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMF------VQSTLMDLYLKCGDVDGGRKMFDK 139
+ AC + + GK +H + RD F + ++L+D+Y +CG VD +F +
Sbjct: 354 LSACGQNGDLASGKMIH------CYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTE 407
Query: 140 MRVRSVVSWTTMISGLAASG 159
M ++V+SW +I LA G
Sbjct: 408 MPNKNVISWNVIIGALAMHG 427
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L+ LLD+ + G+ D A+ +F+++ +V +WN++I AL + G + + + + M+ +
Sbjct: 384 LLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDA 443
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
F PD+ TF ++ AC +E G+ +A ++ ++DL + G +
Sbjct: 444 FSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKA 503
Query: 134 RKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ M ++ VV W ++ G+++
Sbjct: 504 VNLIKDMSIKPDVVVWGALLGACRIHGNVE 533
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 87/151 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G+S D ++ LLDL G + AL +F +V WNLM+ A ++
Sbjct: 270 LLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKS 329
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M+ G RP+KFT+P +++ C + I G+++H L +K GF DM+V L+D+
Sbjct: 330 FDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDM 389
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G +D +++ D + + VVSWT+MI+G
Sbjct: 390 YSKYGWLDKAQRILDMIEEKDVVSWTSMIAG 420
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + L+D+ S YG D A + I V +W MI +AL
Sbjct: 372 IKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEAL 431
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD I AC A+ +G ++H +G+S D+ + + L+ LY
Sbjct: 432 ETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLY 491
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CG F+ + + ++W +ISG A SG + A
Sbjct: 492 ARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEA 531
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S D + L+ L + G + A F I TWN +I G +AL ++
Sbjct: 476 GYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVF 535
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G + + FTF I A I++GK++H +K G++ + + + L+ LY KC
Sbjct: 536 MKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKC 595
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G ++ + F +M R+ VSW T+I+ + G
Sbjct: 596 GSIEDAKMDFFEMTKRNEVSWNTIITCCSQHG 627
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
T+N +I G +AL +++ M +G PD T ++ AC A + KGK++H
Sbjct: 211 TFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYL 270
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+KAG S D ++ +L+DLY+K GD++ ++FD +VV W M L A G +D
Sbjct: 271 LKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM---LVAYGQID 324
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I GLS +++ L+DL + G A VF ++ +W ++ +G +
Sbjct: 67 KAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEE 126
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY M +G P + ++ AC + + G+ +H K GF + FV + L+
Sbjct: 127 AVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALIS 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LYL+C ++F M V++ T+ISG A G D A
Sbjct: 187 LYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRA 228
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 79/168 (47%), Gaps = 14/168 (8%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G +++ + L+ L G + A + F ++ + +WN +I + G L+
Sbjct: 572 RVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLE 631
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMF 115
AL L++ M G +P TF V+ AC +E+G HG+ + D +
Sbjct: 632 ALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRP----DHY 687
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ ++D+ + G +D ++ ++M + + + W T++S +L+
Sbjct: 688 --ACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLE 733
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H A+ G S + + L+DLY K G V R++F+++ VR VSW ++SG A +G
Sbjct: 63 EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%)
Query: 40 RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ P+ F N M+RA G S +A+ LY M G + FT+PFV+K C + L G+
Sbjct: 93 QAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGE 152
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
VHG V+ GF D+FV++ L+D+Y KCG++ ++FD+M +R VV WT MI+
Sbjct: 153 VVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMIT 206
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A LVF ++ + +WN M+ T +G AL L+N M + P+ T ++ AC
Sbjct: 256 ARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSY 315
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RSVVSWT 149
+ G+++H + + D +++ +MD+Y+KCGD+D +MF+ + R V SW
Sbjct: 316 LGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWN 375
Query: 150 TMISGLAASG 159
+ISG G
Sbjct: 376 VLISGYGVHG 385
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSSL 61
+I + D L ++D+ G D A+ +F+ V +WN++I + G
Sbjct: 329 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 388
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ M G P+ TF ++ AC + I++G++ K +M + ++
Sbjct: 389 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMV 448
Query: 122 DLYLKCGDVDGGRKMFDKMRVR 143
D+ + G ++ ++ K+ R
Sbjct: 449 DMLGRAGFLNEAFRLIKKIPSR 470
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D L+ L+ + G+ A VF I V WN MI +G S +A+ L+
Sbjct: 260 GMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLF 319
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M G PDK T V+ AC A A+E G E+ G A G +++V + L+D+Y KC
Sbjct: 320 HNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKC 379
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GD+D ++F KMR ++V SW +I GLA +G D A
Sbjct: 380 GDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEA 416
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L++ V L+ + S+ A VF+ I V +WN M++A G + + +
Sbjct: 159 LNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLR 218
Query: 69 LMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G P+ T V+ AC + G+ V + AG D V S L+ +Y KC
Sbjct: 219 DMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKC 278
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G++ R++FD + + VV+W MI+G A +G
Sbjct: 279 GEIAEARRVFDSIIDKDVVAWNAMITGYAQNG 310
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL N+ + L+D+ + G D A+ VF ++RC +V +WN +I L +G +A+ +
Sbjct: 361 GLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHF 420
Query: 68 NLMIC-NGFRPDKFTFPFVIKACIASLAIEKGK 99
LM +G +PD TF V+ AC+ + ++ GK
Sbjct: 421 ELMRNEDGLKPDDITFIGVLSACVHAGLVKDGK 453
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+ + + L+ LL + S +A +F I P VF +N +I+A + G Q
Sbjct: 12 LRNGIEHTKQLIVSLLQIPSI----PYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCF 67
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY M G P++ +F F+ AC + + ++G+ +H VK+GF D+F + L+D+Y
Sbjct: 68 SLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMY 127
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G + RK FD+M VR V +W +MI+G A GDL+ A
Sbjct: 128 AKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGA 167
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G + AL +F + +V +W MI +G +AL ++ +M RP++ T V
Sbjct: 162 GDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-VRS 144
+ AC A+E G+ + A G+ ++++V + L+++Y +CG +D +F+++ R+
Sbjct: 222 LPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRN 281
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ SW +MI GLA G D A
Sbjct: 282 LCSWNSMIMGLAVHGRCDEA 301
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
LL++ + G+ D A VF +I ++ +WN MI L + G +A+ L+ M+ G P
Sbjct: 256 LLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAP 315
Query: 78 DKFTFPFVIKACIASLAIEKGKE 100
D TF V+ AC + +G+
Sbjct: 316 DDVTFVGVLLACTHGGMVVEGQH 338
>gi|449460654|ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 471
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II GL + + + KL+ CS G +A LVF + P+ F +N +IR +
Sbjct: 66 RIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHP 125
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+ LY M+ +GF P++FT PFV+K+C + LA + VH A++ G ++V + L
Sbjct: 126 INAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNAL 185
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ Y G V ++FD+M R++VSW +MI G +G
Sbjct: 186 INAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNG 224
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 8 GLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
G+ D +L LLD+ S +G HA +F QI +V +WN MI DG +ALLL
Sbjct: 275 GIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLL 334
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M PD+ T V+ AC + G++ HG + + + ++L+D+Y+K
Sbjct: 335 FQQMCETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVK 394
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD-LDA 163
CG ++ F + + +++VSW +I LA G LDA
Sbjct: 395 CGALETVLDFFFEFKDKNLVSWNIVIQALALHGHGLDA 432
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ IR G+ + + L++ + +G A VF ++ + +WN MI +G
Sbjct: 169 QAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKG 228
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A LL+ M GF+PDKFT ++ C S ++ GK VH G D+ +++ L+D
Sbjct: 229 AFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLD 288
Query: 123 L-YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y K G + R++FD++ ++V+SW +MI G A
Sbjct: 289 IAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEA 331
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R+ + L+ L+D+ G + L F + + ++ +WN++I+AL + G L A
Sbjct: 373 ICRHSIVITVTLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWNIVIQALALHGHGLDA 432
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L L+N+M G PDKFTF ++ AC
Sbjct: 433 LKLFNMMHTTGIWPDKFTFMGLLSAC 458
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 80/151 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D + L+D S G + A LVF Q+ TW +I T G S +
Sbjct: 63 VVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVS 122
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M PD++ V+ AC +E GK++H ++ G D+ V + L+D
Sbjct: 123 LELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDF 182
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y KC V GRK+FD+M V++++SWTTMISG
Sbjct: 183 YTKCNRVKAGRKLFDQMVVKNIISWTTMISG 213
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
II+ G+S D L+D+ CS+ H VF ++ + WN M T +
Sbjct: 366 IIKXGVSLDLFAGSALIDVYSKCSYVKDARH---VFEEMNEKDIVVWNAMFFGYTQHLEN 422
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL LY+ + + +P++FTF +I A ++ G++ H VK G FV + L
Sbjct: 423 EEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNAL 482
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KCG ++ RKMF+ R VV W +MIS A G+ + A
Sbjct: 483 VDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEA 526
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 57 DGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+G S +AL+++ +L +G P++F VI+AC +EKG ++HG V++GF +D++
Sbjct: 14 EGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVY 73
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V ++L+D Y K GB++ R +FD++ ++ V+WTT+I+G G
Sbjct: 74 VGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCG 117
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D +V L+D + + +F Q+ ++ +W MI + +A
Sbjct: 164 VLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEA 223
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G++PD F V+ +C + A+E+G++VH +KA + FV++ L+D+
Sbjct: 224 MKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDM 283
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K + +K+FD M ++V+S+ MI G ++ L A
Sbjct: 284 YAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEA 324
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ L +++ + L+D+ Y K++ A VF + +V ++N MI +
Sbjct: 266 IKANLESNEFVKNGLIDM---YAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLS 322
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ M F P TF ++ + A+E K++HGL +K G S D+F S L+
Sbjct: 323 EALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALI 382
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D+Y KC V R +F++M + +V W M G
Sbjct: 383 DVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 415
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-----------GKTDHALLVFSQIRCPHVFTWNLMIRA 53
+R+G LV+ LD C F G + A +F+ V WN MI
Sbjct: 457 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 516
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAG 109
G + +AL ++ M+ G +P+ TF V+ AC + +E G + G +K G
Sbjct: 517 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPG 576
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ ++ L + G + ++ +KM + + + W +++S +G+++
Sbjct: 577 TEH----YACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 626
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Query: 4 IIRYGLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I +GL D+ ++ KL+ + S G ++A +F+ I P +F +NLMI+A GS
Sbjct: 31 IFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLR 90
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIK--ACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
A+ L+ + G PD +T+P+V+K CI + +G+++H VK G D +V ++
Sbjct: 91 SAISLFQQLRERGVWPDNYTYPYVLKGIGCIGE--VREGEKIHAFVVKTGLEFDPYVCNS 148
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
LMD+Y + G V+G ++F++M R VSW MISG
Sbjct: 149 LMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISG 183
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+D+ + G + VF ++ +WN+MI +A
Sbjct: 134 VVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEA 193
Query: 64 LLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y M + + +P++ T + AC +E GKE+H + + + L+D
Sbjct: 194 VDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDY-IANELDLTPIMGNALLD 252
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V R++FD M V++V WT+M++G G LD A
Sbjct: 253 MYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQA 294
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A +F + V W MI A+ L+ M G PDKF ++
Sbjct: 289 GQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLL 348
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C A+E+GK +H + D V + L+++Y KCG ++ ++F+ ++
Sbjct: 349 TGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTT 408
Query: 147 SWTTMISGLAASGDLDAA 164
SWT++I GLA +G A
Sbjct: 409 SWTSIICGLAMNGKTSEA 426
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+++ + G + +L +F+ ++ +W +I L ++G + +AL L+ M
Sbjct: 375 DAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQ 434
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G +PD TF V+ AC + +E+G+++ H ++ ++ +DL + G +
Sbjct: 435 TCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLL 494
Query: 131 DGGRKMFDKMRVRS----VVSWTTMISGLAASGDLD 162
++ K+ ++ V + ++S G++D
Sbjct: 495 QEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNID 530
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 76/133 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF ++ V +W MI A G +AL ++ M+ GFRP++FT +
Sbjct: 60 GDVAAASTVFDRMASRDVVSWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSAL 119
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A+ GK++HG VK + D+ V S L+ +Y +CG+V + +FDKM R+ +
Sbjct: 120 KACAEEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTI 179
Query: 147 SWTTMISGLAASG 159
+WT+MISG A SG
Sbjct: 180 TWTSMISGYAQSG 192
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + + + L+ S G+ +A + + W MI G +++
Sbjct: 238 QIIKNCMEQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDAVAWTAMISGYNNLGHNVE 297
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL + M+ +G P+ +T+ +KAC A+ G+ +HG+ K ++FV +L+D
Sbjct: 298 ALKSLDEMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVNKTQAFSNVFVGCSLID 357
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+Y++CG VD R++FD M ++V+W MI+G
Sbjct: 358 MYMRCGKVDEARRVFDAMPEHNLVTWKVMITGF 390
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ G + TF ++K+C + G++VH VK G+S ++ V S + Y +CGD
Sbjct: 3 MLATGIEGNSLTFVCLLKSCGERCDAKLGQQVHCCVVKGGWS-NVIVDSAVAHFYAQCGD 61
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V +FD+M R VVSWTTMI+ G D A
Sbjct: 62 VAAASTVFDRMASRDVVSWTTMITAYVQHGHGDKA 96
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLD--------LCSFY---GKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G +V++L L + Y G+ A VF ++ + TW M
Sbjct: 125 EKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTITWTSM 184
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G +A+LL+ M + T ++ AC + +I GKE+H +K
Sbjct: 185 ISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQIIKNCM 244
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+++ + STL+ Y +CG+ ++ + M R V+WT MISG
Sbjct: 245 EQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDAVAWTAMISG 288
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ GK D A VF + ++ TW +MI T + +AL LM +G+ D
Sbjct: 355 LIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQNCLCEEALKYMYLMQQDGYDVD 414
Query: 79 KFTFPFVIKAC 89
F V+ +C
Sbjct: 415 DFVLSTVLSSC 425
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-- 59
I+ G ++ + KLL+ C S G +A LVF +I P WN MIR + S
Sbjct: 28 ILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPL 87
Query: 60 SLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
LQA++ YN M+ RPD +TF F++KAC + K +EVHG ++ G+ +D+ + +
Sbjct: 88 QLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCT 147
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y G ++ K+F++M R +VSW +MIS +G + A
Sbjct: 148 NLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 193
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR+G D +L L+ + G + A VF ++ + +WN MI G +A
Sbjct: 134 IIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 193
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y+ M + D FT ++ +C A+ G ++H A + ++FV + L+D+
Sbjct: 194 LKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDM 253
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + +F+ M R V +W +MI G G D A
Sbjct: 254 YAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEA 294
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G AL +F+ + VFTWN MI + G +A+ + M+ G RP+
Sbjct: 250 LIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 309
Query: 79 KFTFPFVIKACIASLAIEKG 98
TF ++ C +++G
Sbjct: 310 SITFLGLLCGCSHQGLVKEG 329
>gi|302776722|ref|XP_002971510.1| hypothetical protein SELMODRAFT_172234 [Selaginella moellendorffii]
gi|300160642|gb|EFJ27259.1| hypothetical protein SELMODRAFT_172234 [Selaginella moellendorffii]
Length = 357
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++KII GL +D ++ L+++ + G A F + ++ +WN MI GSS
Sbjct: 60 VRKIISRGLESDTVVGTALVNMYARCGDVVTARTNFDNLCSKNIVSWNAMIAGYVQAGSS 119
Query: 61 LQALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ALLLY M + +P D TF V+ AC I +G+++H + F+ D+ VQ+
Sbjct: 120 QEALLLYEKMQQDEAKPKADGLTFASVLAACSNLGEISRGRKLHDDVAASDFAEDLIVQN 179
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG++ R +F+ ++ RSV+SWT+M++ A G
Sbjct: 180 ALVDMYGKCGNLVESRNVFEGIKSRSVISWTSMVTAYARHG 220
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 30/119 (25%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVH-------------------------GLA----- 105
PD FTF + AC +++ G+ +H LA
Sbjct: 4 EPDVFTFSTLFSACSNLRSLDAGRAIHKRLGKSLVSDLILQNALLNMYSKCGSLADVRKI 63
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ G D V + L+++Y +CGDV R FD + +++VSW MI+G +G A
Sbjct: 64 ISRGLESDTVVGTALVNMYARCGDVVTARTNFDNLCSKNIVSWNAMIAGYVQAGSSQEA 122
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+ D ++ L+D+ G + VF I+ V +W M+ A G +A+ L
Sbjct: 172 AEDLIVQNALVDMYGKCGNLVESRNVFEGIKSRSVISWTSMVTAYARHGHGAEAVELVWR 231
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCG 128
M G D T +++AC S ++ V G V+ G + + LMDL + G
Sbjct: 232 MSLEGVEADDVTLTSILQACSHSGLVDAAGSVFGTVVRDQGMELSIEHKLCLMDLLGRTG 291
Query: 129 DVDGGRKMF---DKMRVRSVVSWTTMISG 154
++ + + ++ R+ SWT+ +S
Sbjct: 292 WIEEAEEFLASSEDLKARA-ASWTSFLSA 319
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 9/170 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLC------SFYGKTD---HALLVFSQIRCPHVFTWNLMIRAL 54
++R L +D + +LL L +F+ T+ +A +FSQI+ P++F +N++IR
Sbjct: 35 LLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVLIRCF 94
Query: 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM 114
+ +A Y M+ + PD TFPF+IKA + G++ H V+ GF D+
Sbjct: 95 STGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDV 154
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+V+++L+ +Y CG + ++F +M R VVSWT+M++G G ++ A
Sbjct: 155 YVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDA 204
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 75/138 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F ++ ++FTW++MI + +A+ L+ LM G ++ VI
Sbjct: 199 GMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVI 258
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+C A+E G+ H VK+ + ++ + + L+D+Y +CG+++ ++F+++ + +
Sbjct: 259 SSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSL 318
Query: 147 SWTTMISGLAASGDLDAA 164
SW+++I GLA G A
Sbjct: 319 SWSSIIKGLAVHGHAHKA 336
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +++ ++ + +L L+D+ G+ + A+ VF ++ +W+ +I+ L + G +
Sbjct: 275 EYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAH 334
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTL 120
+A+ ++ M+ GF P T V+ AC ++KG E++ + G + +
Sbjct: 335 KAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCI 394
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR 143
+D+ + G + KM V+
Sbjct: 395 VDMLGRAGKLAEAENFILKMPVK 417
>gi|224148148|ref|XP_002336601.1| predicted protein [Populus trichocarpa]
gi|222836288|gb|EEE74709.1| predicted protein [Populus trichocarpa]
Length = 223
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A VF QI+ P++F +N IR + ++ Y NG PD T+PF++KAC
Sbjct: 64 DYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKAC 123
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+++ G + HG ++ GF D++VQ++L+ +Y GD+ +F ++ VVSWT
Sbjct: 124 TQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWT 183
Query: 150 TMISGLAASGDLDAA 164
+M++G SGD+ +A
Sbjct: 184 SMVAGYIKSGDVTSA 198
>gi|449528126|ref|XP_004171057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 415
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+II GL + + + KL+ CS G +A LVF + P+ F +N +IR +
Sbjct: 10 RIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHP 69
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+ LY M+ +GF P++FT PFV+K+C + LA + VH A++ G ++V + L
Sbjct: 70 INAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSHVYVHNAL 129
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ Y G V ++FD+M R++VSW +MI G +G
Sbjct: 130 INAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNG 168
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 8 GLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
G+ D +L LLD+ S +G HA +F QI +V +WN MI DG +ALLL
Sbjct: 219 GIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLL 278
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M PD+ T V+ AC + G++ HG + + + ++L+D+Y+K
Sbjct: 279 FQQMCETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVK 338
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD-LDA 163
CG ++ F + + +++VSW +I LA G LDA
Sbjct: 339 CGALETVLDFFFEFKDKNLVSWNIVIQALALHGHGLDA 376
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ IR G+ + + L++ + +G A VF ++ + +WN MI +G
Sbjct: 113 QAIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKG 172
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A LL+ M GF+PDKFT ++ C S ++ GK VH G D+ +++ L+D
Sbjct: 173 AFLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLD 232
Query: 123 L-YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y K G + R++FD++ ++V+SW +MI G A
Sbjct: 233 IAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEA 275
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R+ + L+ L+D+ G + L F + + ++ +WN++I+AL + G L A
Sbjct: 317 ICRHSIVITVTLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWNIVIQALALHGHGLDA 376
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L L+N+M G PDKFTF ++ AC
Sbjct: 377 LKLFNMMHTTGIWPDKFTFMGLLSAC 402
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHA----LLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
L ND ++ +L+ + S D A LL+ S P TWN++ R + S ++++
Sbjct: 41 LQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPS--TWNMLSRGYSSSDSPVESI 98
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y+ M G +P+K TFPF++KAC + L + G+++ +K GF D++V + L+ LY
Sbjct: 99 WVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLY 158
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
C RK+FD+M R+VVSW ++++ L +G L+
Sbjct: 159 GTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLN 196
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++++G D + L+ L KT A VF ++ +V +WN ++ AL +G
Sbjct: 138 EVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNL 197
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ MI F PD+ T ++ AC +L++ GK VH + + + + L+D
Sbjct: 198 VFECFCEMIGKRFCPDETTMVVLLSACGGNLSL--GKLVHSQVMVRELELNCRLGTALVD 255
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G ++ R +F++M ++V +W+ MI GLA G + A
Sbjct: 256 MYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEA 297
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 9 LSNDQLLVRKL----------LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
L + Q++VR+L +D+ + G ++A LVF ++ +V+TW+ MI L G
Sbjct: 233 LVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYG 292
Query: 59 SSLQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFV 116
+ +AL L++ +M + RP+ TF V+ AC + ++ G K H + M
Sbjct: 293 FAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIH 352
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++D+ + G ++ KM V W T++S + D D
Sbjct: 353 YGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDED 399
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-- 59
I+ G ++ + KLL+ C S G +A LVF +I P WN MIR + S
Sbjct: 46 ILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPL 105
Query: 60 SLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
LQA++ YN M+ RPD +TF F++KAC + K +EVHG ++ G+ +D+ + +
Sbjct: 106 QLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCT 165
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y G ++ K+F++M R +VSW +MIS +G + A
Sbjct: 166 NLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 211
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR+G D +L L+ + G + A VF ++ + +WN MI G +A
Sbjct: 152 IIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 211
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y+ M + D FT ++ +C A+ G ++H A + ++FV + L+D+
Sbjct: 212 LKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDM 271
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + +F+ M R V +W +MI G G D A
Sbjct: 272 YAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEA 312
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G AL +F+ + VFTWN MI + G +A+ + M+ G RP+
Sbjct: 268 LIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 327
Query: 79 KFTFPFVIKACIASLAIEKG 98
TF ++ C +++G
Sbjct: 328 SITFLGLLCGCSHQGLVKEG 347
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 86/151 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G+S D + LLDL G + A +F+ +V WNLM+ A ++
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M G P++FT+P +++ C + IE G+++H L++K GF DM+V L+D+
Sbjct: 331 FEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G +D RK+ + + R VVSWT+MI+G
Sbjct: 391 YSKYGCLDKARKILEMLEKRDVVSWTSMIAG 421
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + D + L++L + G+++ A +F +I TWN +I QAL+++
Sbjct: 477 GYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVF 536
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M G + + FTF I A +A+LA I++GK+VHG AVK G + + V + L+ LY K
Sbjct: 537 MKMGQAGAKYNVFTFISAISA-LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGK 595
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CG ++ + +F +M +R+ VSW T+I+ + G
Sbjct: 596 CGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
T+N +I G AL +++ M +G RPD T ++ AC + ++KGK++H
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL 271
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+KAG S D + +L+DLY+KCGD++ +F+ +VV W M+ DL
Sbjct: 272 LKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + L+D+ S YG D A + + V +W MI +AL
Sbjct: 373 IKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEAL 432
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD AC A+ +G ++H +G++ D+ + +TL++LY
Sbjct: 433 ATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLY 492
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+CG + +F ++ + ++W +ISG S
Sbjct: 493 ARCGRSEEAFSLFREIEHKDEITWNGLISGFGQS 526
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D+L+ L+DL + G A VF ++ +W M+ G +A LY
Sbjct: 73 GLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLY 132
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M P + V+ AC +G+ +H K F + FV + L+ LYL
Sbjct: 133 SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G ++F M V++ T+ISG A G + A
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECA 229
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ G +++ + L+ L G + A ++FS++ + +WN +I + + G L+
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE 632
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMF 115
AL L++ M G +P+ TF V+ AC +E+G V+GL D +
Sbjct: 633 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP----DHY 688
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ ++D+ + G +D R+ D+M + + + W T++S +++
Sbjct: 689 --ACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIE 734
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H +V G D + + L+DLY K G V R++F ++ R VSW M+SG A SG
Sbjct: 64 EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I +GL + + L+++ C G+ D A ++ ++ + WN++I T+ G S
Sbjct: 238 ITEHGLDDTTTMSNALVNVYGRCE-TGELDVAEVILQEMDEQQITAWNVLINGYTLHGRS 296
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL Y + DK TF V+ AC +S ++ +GK +H AV+ G D+ V++ L
Sbjct: 297 REALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNAL 356
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
++Y KCG ++ R++FD M +RS VSW M+ A G+ +
Sbjct: 357 TNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESE 398
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + C V TWN MI A +I S +A ++ M G R D+ TF ++
Sbjct: 59 GSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSIL 118
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC+ ++ GK V + F D+FV + L+ +Y +C + ++F +M+ ++++
Sbjct: 119 DACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLI 178
Query: 147 SWTTMISGLAASGDLDAA 164
+W+ +I+ A G A
Sbjct: 179 TWSAIITAFADHGHCGEA 196
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ G + + TF V+ + + A+ KGK +H ++ S D+FV + L++ Y KCG
Sbjct: 1 MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+ RK+FD M RSV +W +MIS + S
Sbjct: 61 LTDARKVFDGMPCRSVGTWNSMISAYSIS 89
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL +D ++ L ++ S G ++A +F + +WN M++A G S + L
Sbjct: 342 VECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVL 401
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L M G + + TF V+ +C A L E + H L G L+DL
Sbjct: 402 KLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDL 461
Query: 124 YLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ G + K KM +V+W +++ DLD
Sbjct: 462 LGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLD 501
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY- 67
S D +L +L+ + S G + LVF ++ ++F WN ++ + +A+ +
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
L+ F+PD FTFP +IKAC I GK VHG+AVK G D+FV + ++ LY KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D ++FDKM ++++SW ++I G + +G
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
++R GL + + LL L CS FYG+T F ++ + WN M+ + +
Sbjct: 543 VLRNGLEMNSFVAVSLLSLYFHCSKPFYGRT-----YFERMGDKNSVCWNAMLSGYSQNE 597
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+AL L+ M+ +G PD+ ++ AC A+ GKEVH A+K D FV
Sbjct: 598 LPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVAC 657
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+LMD+Y K G + +++F+++ + V SW MI+G G + A
Sbjct: 658 SLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL D + ++ L G D A+ +F ++ ++ +WN +IR + +G L+A
Sbjct: 237 VKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAY 296
Query: 65 LLYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ +G PD T ++ C ++ G +HG+AVK G ++ V + L+D
Sbjct: 297 RAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALID 356
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG + +F K+ +SVVSW +MI + G
Sbjct: 357 MYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R+ +L+ + + G A VF + V +WN +I +G ++AL
Sbjct: 443 LRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKAL 502
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y M G PD F+ ++ AC ++ GKE+HG ++ G + FV +L+ LY
Sbjct: 503 DFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
C GR F++M ++ V W M+SG + +
Sbjct: 563 FHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQN 596
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL ++ ++ L+D+ S G A ++F +I V +WN MI A + +G +
Sbjct: 340 VKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETF 399
Query: 65 LLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L M ++ T ++ AC+ + + +HG +++ F + + +
Sbjct: 400 DLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIA 459
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG + +F M +SV SW +I G A +GD
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ L D + L+D+ + G H+ +F+++ V +WN+MI + G +A+
Sbjct: 645 LKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAV 704
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L+ M + +PD+FTF V++AC + + +G
Sbjct: 705 ELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEG 738
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
Length = 1347
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR +S D+ + ++D+ S G + A VF QI+ + TWN M+ + +G+SL+A
Sbjct: 989 VIRTDVS-DEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEA 1047
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M + +K TF VI+AC + ++EKG+ VH + G +D+F + L+D+
Sbjct: 1048 INLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGI-KDLFTDTALIDM 1106
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD++ +F M RS+VSW++MI+ G + +A
Sbjct: 1107 YAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSA 1147
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L D L V KL++ +F G D + LVF P F + ++I+ A+ LY+
Sbjct: 588 LRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYH 647
Query: 69 LMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
++ + KF FP V++AC S + G++VHG +K+G D ++++L+ +Y +
Sbjct: 648 RLVSEKTQISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQT 707
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMIS 153
G++ K+FD M VR +V+W+T++S
Sbjct: 708 GNLSDAEKVFDGMPVRDLVAWSTLVS 733
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
N + L L++L + G+ + + ++ WN I G ++AL L+ M
Sbjct: 895 NYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQM 954
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ +PD FT +I AC + + GK++HG ++ S D FVQ++++D+Y K G V
Sbjct: 955 VTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVS-DEFVQNSVIDMYSKSGFV 1013
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+ +FD+++ RS+V+W +M+ G + +G+
Sbjct: 1014 NLACTVFDQIKHRSIVTWNSMLCGFSQNGN 1043
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 77/151 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G+ +D ++ LL + G A VF + + W+ ++ + + L+
Sbjct: 684 RIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLK 743
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M+ +G PD T V++ C + + VHG + F D + ++L+
Sbjct: 744 ALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLT 803
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+Y KCGD+ K+F+K+ ++ VSWT MIS
Sbjct: 804 MYSKCGDLLSSEKIFEKIAKKNAVSWTAMIS 834
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R D+ L LL + S G + +F +I + +W MI + S +
Sbjct: 785 QITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEK 844
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM-FVQSTLM 121
AL ++ M+ +G P+ T ++ +C + I +GK VHG A++ + + L+
Sbjct: 845 ALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALV 904
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+LY +CG + + + R++V W + IS A G
Sbjct: 905 ELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRG 942
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A VF + + +W+ MI A + G A+ +N M+ +G +P+
Sbjct: 1103 LIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPN 1162
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ F V+ AC S ++E+GK L G S + + +DL + GD+ +
Sbjct: 1163 EVVFMNVLSACGHSGSVEEGKYYFNLMKLFGVSPNSEHFACFIDLLSRSGDLKEAYRTIK 1222
Query: 139 KMRVRSVVS-WTTMISGLAASGDLD 162
+M + S W ++++G +D
Sbjct: 1223 EMPFLADASVWGSLVNGCRIHQKMD 1247
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY- 67
S D +L +L+ + S G + LVF ++ ++F WN ++ + +A+ +
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
L+ F+PD FTFP +IKAC I GK VHG+AVK G D+FV + ++ LY KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D ++FDKM ++++SW ++I G + +G
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
++R GL + + LL L CS FYG+T F + + WN M+ + +
Sbjct: 543 VLRNGLEMNSFVAVSLLSLYFHCSKPFYGRT-----YFETMGDKNSVCWNAMLSGYSQNE 597
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+AL L+ M+ +G PD+ ++ AC A+ GKEVH A+K D FV
Sbjct: 598 LPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVAC 657
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+LMD+Y K G + +++F+++ + V SW MI+G G + A
Sbjct: 658 SLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL D + ++ L G D A+ +F ++ ++ +WN +IR + +G L+A
Sbjct: 237 VKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAY 296
Query: 65 LLYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ +G PD T ++ C ++ G +HG+AVK G ++ V + L+D
Sbjct: 297 RAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALID 356
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG + +F K+ +SVVSW +MI + G
Sbjct: 357 MYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R+ +L+ + + G A VF + V +WN +I +G ++AL
Sbjct: 443 LRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKAL 502
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y M G PD F+ ++ AC ++ GKE+HG ++ G + FV +L+ LY
Sbjct: 503 DFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
C GR F+ M ++ V W M+SG + +
Sbjct: 563 FHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQN 596
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL ++ ++ L+D+ S G A ++F +I V +WN MI A + +G +
Sbjct: 340 VKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETF 399
Query: 65 LLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L M ++ T ++ AC+ + + +HG +++ F + + +
Sbjct: 400 DLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIA 459
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG + +F M +SV SW +I G A +GD
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ L D + L+D+ + G H+ +F+++ V +WN+MI + G +A+
Sbjct: 645 LKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAV 704
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L+ M + +PD+FTF V++AC + + +G
Sbjct: 705 ELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEG 738
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+ L+ KL+ C+ + A L+F+ + P++F N ++AL + A+ +N
Sbjct: 22 DPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQ 81
Query: 71 IC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+ N PD+FTF V+KAC + G+++H + K GF ++FV+++L+D+Y K G
Sbjct: 82 VSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAG 141
Query: 129 DVDGGRKMFDKM--RVRSVVSWTTMISGLAAS 158
+ R +FD+M R R+VV W MI+G A +
Sbjct: 142 YLLLARHLFDEMFVRDRNVVCWNAMIAGYAQN 173
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQ--IRCPHVFTWNLMIRALTIDG 58
+ + G ++ + L+D+ Y K + LL +F + +R +V WN MI +
Sbjct: 118 VTKQGFESNLFVRNSLIDM---YFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNE 174
Query: 59 SSLQALLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
A+ ++ +M G P+ T V+ AC A++ GK + G + + +F+
Sbjct: 175 KYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLG 234
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L D+Y KCG + R++F+KM R V+SW+ +I GLA G D A
Sbjct: 235 NALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEA 281
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
L L D+ + G A VF+++ V +W+++I L + G + +A + M+
Sbjct: 232 FLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDC 291
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDG 132
G +P+ F ++ AC + ++KG K G S + ++DL + G++D
Sbjct: 292 GEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDK 351
Query: 133 GRKMFDKMRVR-SVVSWTTMISG 154
M M ++ +V+ W ++ G
Sbjct: 352 AEDMISSMPMKPNVIIWGALLGG 374
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 90/160 (56%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R+ L ND + L+D+ S G+ A +F+++ V WN +I LTI + +A
Sbjct: 444 VRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAF 503
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M NG P + ++ +I +C +I G+++H +K G+ ++++V S L+D+Y
Sbjct: 504 DFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMY 563
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG++D R FD M ++++V+W MI G A +G D A
Sbjct: 564 AKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKA 603
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 32/185 (17%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFT------------------------- 46
D L +L++L S G HALL F + P+ ++
Sbjct: 42 DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101
Query: 47 ------WNLMIRALT-IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
WN +I AL G +A+ +Y M G P FT V+ AC A+ G+
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
HG+AVK G + FV++ L+ +Y KCG V ++F M + VS+T M+ GLA +G
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTG 221
Query: 160 DLDAA 164
+D A
Sbjct: 222 SIDDA 226
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ LL C A +F +I P V TWN ++ + + L+
Sbjct: 346 GFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELF 405
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD+ T ++ +C ++ G++VH +V+ DMFV S L+D+Y KC
Sbjct: 406 RRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKC 465
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGL 155
G + R +F+KM R VV W ++ISGL
Sbjct: 466 GQIGIARSIFNKMTERDVVCWNSIISGL 493
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +Q + LL + + G A+ +F + P+ ++ M+ L GS AL
Sbjct: 168 VKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDAL 227
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEK--------GKEVHGLAVKAGFSRDMFV 116
L+ M +G D + V+ AC + A + G+ +H L V+ GF D V
Sbjct: 228 RLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHV 287
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+D+Y KC ++D K+F+ + ++VSW +I+G G
Sbjct: 288 GNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEG 330
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 35/151 (23%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G +DQ + L+D+ + + D A+ VF + + +WN++I +GS +A
Sbjct: 276 VVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKA 335
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + +LM GF P++ T+ ++ +CI
Sbjct: 336 VEVLSLMQEAGFEPNEVTYSNLLASCI--------------------------------- 362
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K DV R MFDK+ SV +W T++SG
Sbjct: 363 --KARDVHSARAMFDKISRPSVTTWNTLLSG 391
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + G D A L F + ++ WN MI +G +
Sbjct: 543 QVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDK 602
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK 97
A+ L+ M+ +PD TF V+ C S ++K
Sbjct: 603 AVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDK 637
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I GL N + +L+ C S G +A +F I P WN +IR S +
Sbjct: 32 VIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRGFAQSPSPV 91
Query: 62 QALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
QA+ YN M+ + PD FTF F +KAC A++K +EVHG ++ G+ RD+ V + L
Sbjct: 92 QAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGL 151
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y + G V+ R +FD M R +V+W MIS + +G
Sbjct: 152 VRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAG 190
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G D ++ L+ G + A +VF + + WN MI + G +A
Sbjct: 136 IIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEA 195
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y+ M D FT ++ +C A+ G ++H +A + G R++FV + L+D+
Sbjct: 196 LRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDM 255
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +DG ++F+ M R +W +MI G G D A
Sbjct: 256 YAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEA 295
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQALLL 66
GL + + L+D+ + G D AL VF+ + P FTWN MI + G +A+
Sbjct: 241 GLLRNVFVGNALIDMYAKCGSLDGALEVFNGM--PRDAFTWNSMIVGFGVHGFGDEAIYF 298
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLYL 125
+N M+ G RP+ F ++ C +E+G E H ++ K + ++D+Y
Sbjct: 299 FNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYG 358
Query: 126 KCGDVD 131
+ G ++
Sbjct: 359 RAGKLE 364
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+ + + L+ LL + S +A +F I P VF +N +I+A + G Q
Sbjct: 12 LRNGIEHTKQLIVSLLQIPSI----PYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCF 67
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY M G P++ +F F+ AC + + ++G+ +H VK+GF D+F + L+D+Y
Sbjct: 68 SLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMY 127
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G + RK FD+M VR V +W +MI+G A GDL+ A
Sbjct: 128 AKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGA 167
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDKFTFPFV 85
G + AL +F + +V +W MI +G +AL ++ +M RP++ T V
Sbjct: 162 GDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-VRS 144
+ AC A+E G+ + A G+ ++++V + L+++Y +CG +D +F+++ R+
Sbjct: 222 LPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRN 281
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ SW +MI GLA G D A
Sbjct: 282 LCSWNSMIMGLAVHGRCDEA 301
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
LL++ + G+ D A VF +I ++ +WN MI L + G +A+ L+ M+ G P
Sbjct: 256 LLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAP 315
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL------MDLYLKCGDVD 131
D TF V+ AC G V G RD + L +DL + G++
Sbjct: 316 DDVTFVGVLLAC-----THGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELR 370
Query: 132 GGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ +M + V W T++ + G ++ A
Sbjct: 371 EAHDLILRMPMEPDSVVWGTLLGACSFHGHVELA 404
>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
Length = 564
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G + A VF+ I+ F+WNLM+ A +GS QAL L+ M+ +G R D+ TF
Sbjct: 6 GSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRVTFVTA 65
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC ++E+GK+ H V++G + + S LM++Y +CG + RK+FD++ V++V
Sbjct: 66 ATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNV 125
Query: 146 VSWTTMISGLAASGDLDAA 164
V W MI+ A +G A
Sbjct: 126 VCWNVMIAAYAQNGHFSEA 144
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + GL + +L L+++ G + A +F +I +V WN+MI A +G +
Sbjct: 84 RFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNVVCWNVMIAAYAQNGHFSE 143
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M +PD+ TF V+ AC +E G+ +H V AG RD FV + L++
Sbjct: 144 ALELYYDM---NLKPDRVTFLNVLHACT----LESGRLIHQDVVSAGLERDKFVGNALVN 196
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
++ KCG + +++FD++ R V+SW ++S
Sbjct: 197 MFGKCGSLSDAKRVFDRIAFRDVISWNALMS 227
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q++ GL D+ + L+ + + D ++ VF +++ V +W MI + G
Sbjct: 275 QELADQGLEQDEQVGNTLITAYNKFSLED-SVAVFERMKRRSVVSWTCMIMGMVEHGYGG 333
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL LY M+ G RPD + AC + + +G+++H L D+FV + ++
Sbjct: 334 RALDLYREMVVEGVRPDAVALVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVV 393
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++Y KCG +F M+ +V +W ++I A G
Sbjct: 394 NMYGKCGKFAEAEAVFQGMKTTTVATWNSLIGAYAQHG 431
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK A VF ++ V TWN +I A G + AL LY M +G RPD T +
Sbjct: 400 GKFAEAEAVFQGMKTTTVATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVTLLCAL 459
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------LMDLYLKCGDVDGGRKMFDKM 140
AC +++ +E + +G D V++ L+DL+ + G +D ++ M
Sbjct: 460 FACSHLGLLDRAREFY-----SGMVEDYQVEAVPAHFGCLVDLFCRAGWIDEAEELIASM 514
Query: 141 RVRSVVS-WTTMISGLAASGDLD 162
VR +S WT +++ A D++
Sbjct: 515 PVRPHISAWTALLNACKAHNDME 537
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 13/172 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+Y LS LV K++D+C D+A +F ++ P+ + +N MIRA T +
Sbjct: 11 VIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLT 70
Query: 64 LLLYNLMICNGFR----------PDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSR 112
+ Y M+ +R PD+FTFPFV+KAC A L + GK+VH K G
Sbjct: 71 IDFYKQML-REYRNSQTSEDLILPDEFTFPFVVKAC-ARLGLHNLGKQVHAQFFKFGKKS 128
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++ L+D+Y KC ++ +FD+M R +SW +ISG G + A
Sbjct: 129 HLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRA 180
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F ++ + +W +I T GS + AL ++ M G PD+ + V+
Sbjct: 175 GQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVL 234
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E GK +H + G R + + L+++Y KCG +D ++FD+MR R V+
Sbjct: 235 PACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVI 294
Query: 147 SWTTMISGLAASGDLDAA 164
SW+TMI GLA G + A
Sbjct: 295 SWSTMIGGLANHGKVREA 312
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + L+++ + G D A +F Q+R V +W+ MI L G +A+
Sbjct: 255 RNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIA 314
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS--TLMDL 123
++ M +P+ TF ++ AC + E+G ++ +K F + ++ +L+DL
Sbjct: 315 IFERMKQTNIKPNGITFVGLLSACAHAGFWEEGL-MYFDTMKKDFHIEPEIEHYGSLVDL 373
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G + + +KM ++ W +++S +++ A
Sbjct: 374 LGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVA 415
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL-- 61
+ + G+ D + L+DL GK D LVF I +V WN M+ +I+G
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEX 401
Query: 62 -----------------------------QALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
+ L ++N ++ +G P+K TF V+ AC +
Sbjct: 402 EELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++KG VHG +K G D+FV + L D+Y KCGD+ +++F++M ++ +SWT MI
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMI 521
Query: 153 SGLAASG 159
GLA SG
Sbjct: 522 QGLAESG 528
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
YG+ + ++ F + +V +W I +G + +AL L+ ++ +G RP+ TF V
Sbjct: 131 YGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSV 190
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++AC G + GL VKAGF + V ++L+ L L+ G++D R++FD+M R V
Sbjct: 191 VRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDV 250
Query: 146 VSWTTMISGLAASGDLDAA 164
VSWT ++ +GDL A
Sbjct: 251 VSWTAILDAYVETGDLREA 269
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+LD G A +F ++ + +W+ MI + G + +AL L++ M+ GF+P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F + A + A+ G +HG K G +D+F+ S+L+DLY KCG D GR +FD
Sbjct: 316 ISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFD 375
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+ ++VV W +M+ G + +G
Sbjct: 376 LILEKNVVCWNSMVGGYSING 396
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
+++ + G Q +L+ +I GF ++ IK I L K E+ + VK
Sbjct: 27 LLKKFSNQGLITQGNVLHAHLIKTGFSSQRY---IAIKLLILYLNCRKFAEIDQI-VKEF 82
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+ V + ++ Y++ G++ R +FD+M R+ VSW+ +ISGL G ++ +
Sbjct: 83 DGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEES 137
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A VF QI+ P++F +N IR + ++ Y NG PD T+PF++KAC
Sbjct: 64 DYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKAC 123
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+++ G + HG ++ GF D++VQ++L+ +Y GD+ +F ++ VVSWT
Sbjct: 124 TQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWT 183
Query: 150 TMISGLAASGDLDAA 164
+M++G SGD+ +A
Sbjct: 184 SMVAGYIKSGDVTSA 198
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTW--------------- 47
+IIR+G +D + L+ + S G A VF +I C V +W
Sbjct: 138 QIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTS 197
Query: 48 -----------NLMIRALTIDGSSL-----QALLLYNLMICNGFRPDKFTFPFVIKACIA 91
NL+ ++ I G + +A+ LY L+ G ++ VI +C
Sbjct: 198 ARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAH 257
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A+E G+ H ++ + ++ + + L+D+Y +CG +D +FD++ R +SWTT+
Sbjct: 258 LGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTL 317
Query: 152 ISGLAASGDLDAA 164
I+G A G + A
Sbjct: 318 IAGFAMHGYAEKA 330
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R ++ + +L L+D+ + G D A+ VF Q+ +W +I + G + +A
Sbjct: 271 ILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA 330
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL--- 120
L ++ M G P + TF V+ AC +E+ GL + RD ++ L
Sbjct: 331 LEYFSRMEKAGLTPREITFTAVLSACSHGGLVER-----GLELFESMKRDYRIEPRLEHY 385
Query: 121 ---MDLYLKCGDVDGGRKMFDKMRVR 143
+DL + G + K ++M ++
Sbjct: 386 GCMVDLLGRAGKLAEAEKFVNEMPMK 411
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 6 RYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS--SL 61
R+G N + KLL+ C S G +A LVF +I P WN MIR + S L
Sbjct: 424 RFGPHNPSI-SEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQL 482
Query: 62 QALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
QA++ YN M+ RPD +TF F++KAC + K +EVHG ++ G+ +D+ + + L
Sbjct: 483 QAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNL 542
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y G ++ K+F++M R +VSW +MIS +G
Sbjct: 543 IRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTG 581
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR+G D +L L+ + G + A VF ++ + +WN MI G +A
Sbjct: 527 IIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 586
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y+ M + D FT ++ +C A+ G ++H A + ++FV + L+D+
Sbjct: 587 LKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDM 646
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + +F+ M R V +W +MI G G D A
Sbjct: 647 YAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEA 687
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G AL +F+ + VFTWN MI + G +A+ + M+ G RP+
Sbjct: 643 LIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 702
Query: 79 KFTFPFVIKACIASLAIEKG 98
TF ++ C +++G
Sbjct: 703 SITFLGLLCGCSHQGLVKEG 722
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL-- 61
+ + G+ D + L+DL GK D LVF I +V WN M+ +I+G
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401
Query: 62 -----------------------------QALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
+ L ++N ++ +G P+K TF V+ AC +
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++KG VHG +K G D+FV + L D+Y KCGD+ +++F++M ++ +SWT MI
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMI 521
Query: 153 SGLAASG 159
GLA SG
Sbjct: 522 QGLAESG 528
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
YG+ + ++ F + +V +W I +G + +AL L+ ++ +G RP+ TF V
Sbjct: 131 YGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSV 190
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++AC G + GL VKAGF + V ++L+ L L+ G++D R++FD+M R V
Sbjct: 191 VRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDV 250
Query: 146 VSWTTMISGLAASGDLDAA 164
VSWT ++ +GDL A
Sbjct: 251 VSWTAILDAYVETGDLREA 269
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+LD G A +F ++ + +W+ MI + G + +AL L++ M+ GF+P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F + A + A+ G +HG K G +D+F+ S+L+DLY KCG D GR +FD
Sbjct: 316 ISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFD 375
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+ ++VV W +M+ G + +G
Sbjct: 376 LILEKNVVCWNSMVGGYSING 396
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
+++ + G Q +L+ +I GF ++ IK I L K E+ + VK
Sbjct: 27 LLKKFSNQGLITQGNVLHAHLIKTGFSSQRY---IAIKLLILYLNCRKFAEIDQI-VKEF 82
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+ V + ++ Y++ G++ R +FD+M R+ VSW+ +ISGL G ++ +
Sbjct: 83 DGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEES 137
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 8/167 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD-----HALLVFSQIRCPHVFTWNLMIRALTID 57
++++ G +QL V LL Y + + + +VF I P+ WN M+RA +
Sbjct: 32 QLLKKGTIRNQLTVSTLL---VSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNS 88
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
ALLLY+ M+ N + +TFPF++KAC A A E+ +++H +K GF +++
Sbjct: 89 NDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYAT 148
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++L+ +Y G++ +F+++ R +VSW MI G G+LD A
Sbjct: 149 NSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMA 195
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 65/134 (48%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G D A +F + +V +W MI G +AL L M+ G +PD T
Sbjct: 189 FGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCS 248
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A+E+GK +H K D + L D+Y+KCG+++ +F K+ + V
Sbjct: 249 LSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCV 308
Query: 146 VSWTTMISGLAASG 159
+WT +I GLA G
Sbjct: 309 CAWTAIIGGLAIHG 322
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L D+ G+ + ALLVFS++ V W +I L I G +AL + M
Sbjct: 276 DPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQ 335
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G P+ TF ++ AC + E+GK + ++ M ++DL + G +
Sbjct: 336 KAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLL 395
Query: 131 DGGRKMFDKMRVR-SVVSWTTMISG 154
R+ + M V+ + W +++
Sbjct: 396 KEAREFIESMPVKPNAAIWGALLNA 420
>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial [Vitis vinifera]
Length = 673
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G ++ + L+D + +G D A F ++ + WN+M+ ++G +A
Sbjct: 204 ILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKA 263
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ LM G + D FTF +I +C + GK+VHGL ++ F D+ V S L+D+
Sbjct: 264 FGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDM 323
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y K +++ RK FD M V+++VSWTTMI G GD
Sbjct: 324 YSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGD 360
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR D L+ L+D+ S + A F + ++ +W MI G +A
Sbjct: 305 IIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEA 364
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L MI PD+ ++ +C A + +VH V+ GF + + + L+
Sbjct: 365 MRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSA 424
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + + F + ++SWT+++ A G
Sbjct: 425 YSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHG 460
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALL-----LYNLMICNGFRPDKFTFPFVIKAC 89
+F ++ +V +WN +I + ++G+ AL+ + M+ P+ T +++A
Sbjct: 130 MFDEMPLKNVVSWNTLICGV-VEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRAS 188
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
I + +++H +K+GF + FV S L+D Y K G VD + FD++ R +V W
Sbjct: 189 IELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWN 248
Query: 150 TMISGLAASG 159
M+S A +G
Sbjct: 249 VMVSCYALNG 258
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ GK++H +K G + +Q+ ++ +Y+KC + + KMFD+M +++VVSW T+I G
Sbjct: 89 LHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICG 148
Query: 155 L 155
+
Sbjct: 149 V 149
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A FS + P + +W ++ A G S + + ++ M+ + RPDK F V+
Sbjct: 429 GSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVL 488
Query: 87 KAC 89
AC
Sbjct: 489 SAC 491
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL-- 61
+ + G+ D + L+DL GK D LVF I +V WN M+ +I+G
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401
Query: 62 -----------------------------QALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
+ L ++N ++ +G P+K TF V+ AC +
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++KG VHG +K G D+FV + L D+Y KCGD+ +++F++M ++ +SWT MI
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMI 521
Query: 153 SGLAASG 159
GLA SG
Sbjct: 522 QGLAESG 528
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
YG+ + ++ F + +V +W I +G + +AL L+ ++ +G RP+ TF V
Sbjct: 131 YGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSV 190
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++AC G + GL VKAGF + V ++L+ L L+ G++D R++FD+M R V
Sbjct: 191 VRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDV 250
Query: 146 VSWTTMISGLAASGDLDAA 164
VSWT ++ +GDL A
Sbjct: 251 VSWTAILDAYVETGDLREA 269
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+LD G A +F ++ + +W+ MI + G + +AL L++ M+ GF+P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F + A + A+ G +HG K G +D+F+ S+L+DLY KCG D GR +FD
Sbjct: 316 ISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFD 375
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+ ++VV W +M+ G + +G
Sbjct: 376 LILEKNVVCWNSMVGGYSING 396
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
+++ + G Q +L+ +I GF ++ IK I L K E+ + VK
Sbjct: 27 LLKKFSNQGLITQGNVLHAHLIKTGFSSQRY---IAIKLLILYLNCRKFAEIDQI-VKEF 82
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+ V + ++ Y++ G++ R +FD+M R+ VSW+ +ISGL G ++ +
Sbjct: 83 DGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEES 137
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 90/162 (55%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G D L ++ + G++ A VF + + +WN +I +
Sbjct: 179 QVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPRE 238
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ +Y MI +PD+ T V+ AC +++ G+E+H ++G + + + + LMD
Sbjct: 239 AMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMD 298
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+KCGD++ G+ +FD MR ++VVSWTTMI G A +G LD A
Sbjct: 299 MYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMA 340
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYG--KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++I GL D +L+ C+ D+ + + + ++ P+VF+WN +IR +
Sbjct: 75 QMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENP 134
Query: 61 LQALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ L+LY M+ G RPD +T+ F+ K C + G E+ G +K GF +DM++ +
Sbjct: 135 QKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNG 194
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ + + G+ K+FD+ VR +VSW ++I+G
Sbjct: 195 IIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLING 229
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F + +V WN MI + S +AL L+ M + +PDK T +
Sbjct: 335 GLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCL 394
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G H K S D+ + + L+D+Y KCG++ ++F++M R+ +
Sbjct: 395 SACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSL 454
Query: 147 SWTTMISGLAASGDLDAA 164
+WT +I GLA G+++ A
Sbjct: 455 TWTAIIGGLALYGNVNDA 472
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 40/166 (24%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ LS D L L+D+ + G AL VF+++ + TW +I L + G+ A
Sbjct: 413 IKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDA 472
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ MI +G PD+ TF V+ AC HG
Sbjct: 473 IFYFSKMIDSGLMPDEITFLGVLTAC-----------CHG-------------------- 501
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-----WTTMISGLAASGDLDAA 164
G V+ GRK FD+M+ R +S ++ M++ L +G L+ A
Sbjct: 502 ----GLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEA 543
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
G +A +VF + P+ + WN M+R +AL+LY+ M+C+ + +TFPF+
Sbjct: 58 GNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFL 117
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+KAC + AIEK ++VH +K GF D++ ++L+ Y G ++ R +FD++
Sbjct: 118 LKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDT 177
Query: 146 VSWTTMISGLAASGDLDAA 164
VSW ++I G G+ + A
Sbjct: 178 VSWNSIIDGYVKCGETETA 196
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 31/188 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWN-------------- 48
+II+ G +D LL + G + A ++F +I P +WN
Sbjct: 136 QIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETET 195
Query: 49 -----------------LMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+MI G +AL L+ M G +PDK V+ AC
Sbjct: 196 AYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAH 255
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A+++G+ +H K D + L D+Y KCG + ++F K R +SV WT +
Sbjct: 256 LGALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCGSMQDALEVFKKTRKKSVSLWTAL 315
Query: 152 ISGLAASG 159
I G A G
Sbjct: 316 IHGFAIHG 323
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 33/189 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCS--FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+R G D + LL + + D A VF + P+VF +N++I+A +
Sbjct: 52 ILRSGHFEDHYVSGTLLKCYANPHFKNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPF 111
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS--- 118
+A+ Y M+ RP+KFT+P ++KAC + A ++G ++HG +K G + D+ ++S
Sbjct: 112 KAICFYYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGI 171
Query: 119 ----------------------------TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
++D Y K GDVD +++F+KM RSV SW
Sbjct: 172 QMYATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNV 231
Query: 151 MISGLAASG 159
M+SGLA +G
Sbjct: 232 MVSGLAKNG 240
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F+ +R +W+ MI G+ +AL ++N+M RP KF V+
Sbjct: 240 GMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVL 299
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+++G+ +H K D + + L+D+Y KCG +D +F+ M+ + V
Sbjct: 300 AACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVF 359
Query: 147 SWTTMISGLAASGDLDAA 164
+W MI GLA G + A
Sbjct: 360 TWNAMICGLAMHGRAEDA 377
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ + G+ D A VF ++ VFTWN MI L + G + A+ L+ M
Sbjct: 326 DAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQ 385
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG 98
R ++ TF ++ AC +++G
Sbjct: 386 KEKVRSNEITFVGLLNACAHKGMVDEG 412
>gi|147842436|emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]
Length = 799
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++ G +L+ ++ + S +G VF + ++F+W +MI A + +G +
Sbjct: 78 KHMVNAGFEPSLVLLNNIMIMYSKFGDFGETFKVFEGMDERNLFSWTVMIGACSKNGDAE 137
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ LY MI +G + D F +P V+K+C A + +G+ VHG + G D+ V ++L+
Sbjct: 138 KAIELYGKMISSGVKADCFLYPLVLKSCGAVKDLRRGQCVHGEVLITGLLGDVVVMNSLI 197
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y+KC V ++FD+M VR V++WTTMI G G
Sbjct: 198 DMYMKCEMVGDSERVFDEMDVRDVITWTTMIVGYMQMG 235
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+++ GL D +++ L+D+ C G ++ VF ++ V TW MI G
Sbjct: 180 EVLITGLLGDVVVMNSLIDMYMKCEMVGDSER---VFDEMDVRDVITWTTMIVGYMQMGR 236
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L+ L L M+ + RP T V+ ++ K++HGLA GF + V +
Sbjct: 237 GLEGLELLKEMLSSQVRPSSATLAGVLPLFSDLGYLKLAKQIHGLAAVTGFEYEKHVGTA 296
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y CG + GR +FD+++ + V W TMI + D A
Sbjct: 297 LVDVYANCGGLYFGRLVFDRVKEKDVSCWNTMIKSYVQANLSDEA 341
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
T+ +I++CI A +G+E+H V AGF + + + +M +Y K GD K+F+ M
Sbjct: 56 TYLSLIRSCIKFKAFSQGREIHKHMVNAGFEPSLVLLNNIMIMYSKFGDFGETFKVFEGM 115
Query: 141 RVRSVVSWTTMISGLAASGDLDAA 164
R++ SWT MI + +GD + A
Sbjct: 116 DERNLFSWTVMIGACSKNGDAEKA 139
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 78/193 (40%), Gaps = 36/193 (18%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G ++ + L+D+ + G LVF +++ V WN MI++ S +A+ L
Sbjct: 286 GFEYEKHVGTALVDVYANCGGLYFGRLVFDRVKEKDVSCWNTMIKSYVQANLSDEAISLL 345
Query: 68 NLMICNGFRPDKFT----FPFVIKA------------CIASLAIEKG------------- 98
M +G P K T FP K+ C+ ++ G
Sbjct: 346 KFMHLDGIHPVKSTWYCFFPHYSKSKFSIHKFLKLIKCLEHAGVKPGVVPDTLLDQMXEN 405
Query: 99 -------KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
KE+H ++G + V S+L +Y K ++ +++F + V+ + W ++
Sbjct: 406 VENVGQVKELHLFFKRSGGISNSSVGSSLXRMYSKFAVLEPAQEIFSCLGVKELDXWNSI 465
Query: 152 ISGLAASGDLDAA 164
++ A +G + A
Sbjct: 466 LACYAHNGYANKA 478
>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 83/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++GL ND + LL+ + + +A +F ++ P+V +W ++ G
Sbjct: 31 NLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRPQS 90
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M + P+ FT VI +C ++ GK VH G ++ V S+L+D
Sbjct: 91 ALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVVCSSLVD 150
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC DVDG R +FD M R+VVSWT MI+G A +G
Sbjct: 151 MYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNG 187
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + ++ L+D+ D A +VF + C +V +W MI +G +AL ++
Sbjct: 137 GLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVF 196
Query: 68 NLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
RP+ F VI AC + + GK HG ++ G+ + V S L+D+Y K
Sbjct: 197 REFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAK 256
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CG K+F ++R SV+ +T+MI G A G
Sbjct: 257 CGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYG 289
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 4/165 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + ++ L+D+ + G ++ VF +IR P V + MI G +
Sbjct: 235 VIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLS 294
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M P+ TF ++ AC S +++G + ++ + K G D+ + ++D
Sbjct: 295 LNLFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVD 354
Query: 123 LYLKCGDVDGGRKMFDKMRV---RSVVSWTTMISGLAASGDLDAA 164
+ + G +D K+ +RV + W T++S G +D A
Sbjct: 355 MLSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDMA 399
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
H K G D + L++ YL+ + +FD+M +VVSWT+++SG G
Sbjct: 29 HANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRP 88
Query: 162 DAA 164
+A
Sbjct: 89 QSA 91
>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Glycine max]
Length = 828
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 87/153 (56%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D+ + L+D+ S G D A +F +I + TWN MI + +G S++AL L++ M
Sbjct: 439 DEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMC 498
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
N ++ TF I+AC S + KGK +H V +G +D+++ + L+D+Y KCGD+
Sbjct: 499 FNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLK 558
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +F+ M +SVVSW+ MI+ G + AA
Sbjct: 559 TAQGVFNSMPEKSVVSWSAMIAAYGIHGQITAA 591
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN +I +G + +A++L+ M+ G PD F+ I AC + ++ G+++HG
Sbjct: 371 VVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHG 430
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K GF+ D FVQ++LMD+Y KCG VD +FDK+ +S+V+W MI G + +G
Sbjct: 431 HVTKRGFA-DEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNG 485
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ GL D ++ LL + G A VF +IR + +W+ ++ +G +
Sbjct: 127 RIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPRE 186
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + M+ G PD T V +AC + K VHG ++ + D ++++L+
Sbjct: 187 GLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIV 246
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y +C + G + MF+ + S WT+MIS +G + A
Sbjct: 247 MYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEA 288
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D L KLL+ + G + LVF P F + ++I+ Q + LY
Sbjct: 28 GLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDSFMFGVLIKCYLWHHLFDQVVSLY 87
Query: 68 NLMICNGFRPDK---FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ I G R + F +P VIKA + G++VHG VK G D + ++L+ +Y
Sbjct: 88 HHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRIVKTGLGTDHVIGTSLLGMY 147
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ G + RK+FD++RVR +VSW+++++ +G
Sbjct: 148 GELGCLSDARKVFDEIRVRDLVSWSSVVACYVENG 182
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
K++ G+ D + L+D+ + G A VF+ + V +W+ MI A I G
Sbjct: 530 HKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIHGQIT 589
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L+ M+ + +P++ TF ++ AC + ++E+GK G + ++++
Sbjct: 590 AATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGIVPNAEHFASIV 649
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
DL + GD+DG ++ S W +++G G +D
Sbjct: 650 DLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMD 691
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+IR ++ D L L+ + YG+ + A +F + P W MI + +G
Sbjct: 229 VIRKEMAGDASLRNSLIVM---YGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCF 285
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQST 119
+A+ + M + + T V+ C +++GK VH ++ D+ +
Sbjct: 286 EEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPA 345
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LMD Y C + K+ + SVVSW T+IS A G
Sbjct: 346 LMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREG 385
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 80/138 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A L+F+Q+ + W++MI +AL L+N M G PD+ T VI
Sbjct: 305 GRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVI 364
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC +++ K +H K GF + + V + L+D+Y KCG ++ R +F+KM++R+V+
Sbjct: 365 SACAHLGVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRNVI 424
Query: 147 SWTTMISGLAASGDLDAA 164
SWT+MI+ A GD ++A
Sbjct: 425 SWTSMINAFAIHGDANSA 442
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKA 88
++AL VF+ I PH N ++RAL+ LL+Y + +G F DKF+FPF++KA
Sbjct: 74 NYALSVFTHIPTPHPTLSNKLLRALSRSSKPETVLLVYQKIREDGLFGLDKFSFPFILKA 133
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
A+ G E+HG+ K F +D F+Q+ LM +Y+ CG + R +FDKM R VV+W
Sbjct: 134 AAKIAALNDGMEIHGVLAKLDFYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTW 193
Query: 149 TTMISGLAASGDLDAA 164
+TMI+G G D A
Sbjct: 194 STMINGYYQGGHFDDA 209
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+ + GK A LVF ++ V TW+ MI G AL L+ M
Sbjct: 158 DPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEMR 217
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+ PDK +I AC + + GKEVH L ++ F+ D ++S L+ LY CG +D
Sbjct: 218 SSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCMD 277
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++F M R++V TTM+SG G ++ A
Sbjct: 278 MAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDA 310
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A VF +++ +V +W MI A I G + AL ++ M P+
Sbjct: 398 LIDMYAKCGCLEAARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEENVEPN 457
Query: 79 KFTFP 83
TFP
Sbjct: 458 AVTFP 462
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 87/151 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G+S D ++ LLDL G AL +F +V WNLM+ A ++
Sbjct: 270 LLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKS 329
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M+ G RP++FT+P +++ C + I G+++H L++K GF DM+V L+D+
Sbjct: 330 FDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDM 389
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G +D R++ + + + VVSWT+MI+G
Sbjct: 390 YSKYGWLDKARRILEVLEAKDVVSWTSMIAG 420
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + L+D+ S YG D A + + V +W MI +AL
Sbjct: 372 IKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEAL 431
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD I AC A+ +G+++H +G+S D+ + + L++LY
Sbjct: 432 ETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLY 491
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CG +F+ + + ++W M+SG A SG + A
Sbjct: 492 ARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEA 531
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S D + L++L + G++ A +F I TWN M+ G +AL ++
Sbjct: 476 GYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVF 535
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G + + FTF I A I++GK++H +K G + + V + L+ LY KC
Sbjct: 536 IKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKC 595
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G ++ + F +M R+ VSW T+I+ + G
Sbjct: 596 GSIEDAKMQFFEMSERNHVSWNTIITSCSQHG 627
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I GL D++ L+DL + G A VF Q+ +W M+ +G +
Sbjct: 67 KAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEE 126
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ LY+ M C+G P + V+ AC + E+G+ VH K G + V + L+
Sbjct: 127 AVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIA 186
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LYL+ G + ++F +M V++ T+IS A G+ ++A
Sbjct: 187 LYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESA 228
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G ++ ++ L+ L +G A VFS++ T+N +I G+
Sbjct: 168 QVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGES 227
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M +G+ PD T ++ AC + + KGK++H +KAG S D ++ +L+D
Sbjct: 228 ALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLD 287
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTM------ISGLAASGDL 161
LY+KCG + ++F +VV W M IS LA S DL
Sbjct: 288 LYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDL 332
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G +++ + L+ L G + A + F ++ + +WN +I + + G L+A
Sbjct: 573 VIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEA 632
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M G +P+ TF V+ AC +E+G ++ + G + ++D
Sbjct: 633 LDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVD 692
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ + G +D RK ++M V + + W T++S +++
Sbjct: 693 ILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIE 733
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+H A+ G D + L+DLY K G V R++F+++ R VSW M+SG A +G
Sbjct: 64 IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 31/164 (18%)
Query: 29 TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88
T +AL VF++I P F +N MIRA T+ S L AL+++ M PD TFPF +KA
Sbjct: 79 TGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKA 138
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY------------------------ 124
C A+ + +H A K GF D+FV +TL+ +Y
Sbjct: 139 CSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSY 198
Query: 125 -------LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+K GD D R++FDKM +R VSW T+++G A SGDL
Sbjct: 199 NALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDL 242
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMICNGFRPDKFTFPFV 85
G TD A +F ++ +W ++ G + A+ L+N M+ + RPD
Sbjct: 209 GDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVSA 268
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC +E+GK +H + + F+ + L+DLY KCG ++ R++F+ +++
Sbjct: 269 LSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKNL 328
Query: 146 VSWTTMISGLAASG 159
+W ++ GL G
Sbjct: 329 FTWNALLVGLGMHG 342
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ L L+DL + G + A +F ++FTWN ++ L + G +L ++ MI
Sbjct: 296 NAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMI 355
Query: 72 CNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G +PD +F ++ C A L E + V R++ + DL + G +
Sbjct: 356 EAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLI 415
Query: 131 DGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+M ++M + V W ++ G G+++ A
Sbjct: 416 REAMEMIERMPMGGDVFVWGGVLGGCRIHGNVEIA 450
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
++AL +F I P +N+MIRA T+ S +AL + M+ D+FTFP +KAC
Sbjct: 77 EYALSIFDNIDGPDSSAYNIMIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKAC 136
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++GK++H VK GF + V +TL+ +Y CG+++ R MFD M R + +W
Sbjct: 137 SRLRGRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWN 196
Query: 150 TMISGLAASG 159
+M SG SG
Sbjct: 197 SMFSGYVKSG 206
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 78/152 (51%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + LV L+D+ + G+ D A +F Q+ V W+ MI + +A+ L+
Sbjct: 257 GLDRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLF 316
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
N M P++ T V+ C A A+ GK +H + G + + + + L+D Y KC
Sbjct: 317 NEMQMANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGKC 376
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G VD ++F M V++V SWT +I GLA +G
Sbjct: 377 GLVDSAIEVFQLMPVKNVYSWTALIQGLANNG 408
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++YG ++ +++ L+ + + G+ + A +F + +F WN M G
Sbjct: 151 QIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYVKSGYYED 210
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G + T V+ AC +E G+ + G R+M + + L+D
Sbjct: 211 TVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMNLVTALVD 270
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+Y KCG+VD R++FD+M R VV+W+ MISG + +
Sbjct: 271 MYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQA 306
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FYGK D A+ VF + +V++W +I+ L +G +AL Y LM + P+
Sbjct: 369 LVDFYGKCGLVDSAIEVFQLMPVKNVYSWTALIQGLANNGQGKRALEYYQLMRESNVEPN 428
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A F+ + P F N+MIR L AL Y M+ G RPD+FTFP V+
Sbjct: 68 GRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVL 127
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
K C + A+ +G+ H +K G D++ ++L+ LY K G V ++FD M R +V
Sbjct: 128 KCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIV 187
Query: 147 SWTTMISGLAASG 159
SW TM+ G ++G
Sbjct: 188 SWNTMVDGYVSNG 200
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +L LL++ GK + + +F QI + +WN MI A +A
Sbjct: 349 VVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEA 408
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ ++ PD FT V+ A + +I + K++H VK G+ + + +M +
Sbjct: 409 IALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHM 468
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG++ R++FDKM + V+SW T+I G A G
Sbjct: 469 YARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHG 504
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL D L+ L + G A VF + + +WN M+ +G A
Sbjct: 146 VIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALA 205
Query: 64 LLLYNLM---ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L + M + G D + AC A+ G+E+HG A++ G +D+ V ++L
Sbjct: 206 LACFREMNDALQVGH--DSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSL 263
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+D+Y KCG+V +F KM +R+VV+W MI G A
Sbjct: 264 VDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYA 299
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 76/150 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR+GL D + L+D+ G A VF+++ V TWN MI ++ + A
Sbjct: 249 IRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAF 308
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M +GF+ + T ++ AC + + G+ VH V+ F + +++ L+++Y
Sbjct: 309 DCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMY 368
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G V+ K+F ++ +++VSW MI+
Sbjct: 369 GKVGKVESSEKIFGQITDKTLVSWNNMIAA 398
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + L++ ++ + + G + +F ++ V +WN +I I G A
Sbjct: 450 IVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIA 509
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L +++ M C+G P++ TF V+ AC ++ L E KE + + + G + + D
Sbjct: 510 LEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTD 569
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G++ + + M + W ++++ D+D A
Sbjct: 570 LLGRAGELREVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIA 612
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++++ G D L KL+++ G D A VF + R ++ WN + RAL + G
Sbjct: 102 RRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGK 161
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASL----AIEKGKEVHGLAVKAGFSRDMFVQ 117
+ L LY M G D+FT+ FV+KAC+ S ++KGKE+H ++ G+ ++ V
Sbjct: 162 ELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVM 221
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+TL+D+Y K G V +F M ++ VSW+ MI+ A +
Sbjct: 222 TTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKN 262
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R+G + ++ LLD+ + +G +A VF + + +W+ MI + ++A
Sbjct: 209 ILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKA 268
Query: 64 LLLYNLMICNGFR--PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L+ LM+ P+ T V++AC A+E+GK +HG ++ G + V + L+
Sbjct: 269 LELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALI 328
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+Y +CG++ G+++FD M+ R VVSW ++IS
Sbjct: 329 TMYGRCGEILMGQRVFDNMKNRDVVSWNSLIS 360
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L G+ QA+ L +C P + TF +I +C ++ G +VH V
Sbjct: 51 NQLIQSLCKGGNLKQAIHL----LCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVS 106
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+GF +D F+ + L+++Y + G +D RK+FD+ R R++ W + LA G
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVG 158
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSS 60
I+R GL + ++ L L + YG+ L+ VF ++ V +WN +I + G
Sbjct: 312 ILRRGLDS---ILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFG 368
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQST 119
+A+ ++ MI G P +F V+ AC + +E+GK + + K M +
Sbjct: 369 KKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYAC 428
Query: 120 LMDLYLKCGDVDGGRKMFDKMR 141
++DL + +D K+ + M
Sbjct: 429 MVDLLGRANRLDEAIKLIEDMH 450
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++R GL D KL S + D+A +F QI P+++TWN +IRA
Sbjct: 47 RMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDP 106
Query: 61 LQALLLYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
Q+ +++ ++ C P+KFTFPFVIKA A G VHG+A+K F D+++ +
Sbjct: 107 FQSFVIFLDLLDKCEDL-PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILN 165
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+L+ Y CGD+ ++F + + VVSW +MIS A
Sbjct: 166 SLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFA 203
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 19 LLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
L L FYG A +F I C V +WN MI A AL L+ M
Sbjct: 164 LNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENV 223
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
P+ T V+ AC L +E G+ V + G D+ + + ++D+Y KCG VD +K
Sbjct: 224 MPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQK 283
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R V SWT M+ G A GD DAA
Sbjct: 284 LFDEMPERDVFSWTIMLDGYAKMGDYDAA 312
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-LMICNGFRP 77
+LD + G D A LVF+ + + WN++I A +G +AL ++N L + +P
Sbjct: 299 MLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKP 358
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D+ T + AC AI+ G +H + G + + S+L+D+Y KCG ++ ++F
Sbjct: 359 DEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVF 418
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R V W+ MI+GL G AA
Sbjct: 419 YSVEERDVYVWSAMIAGLGMHGRGKAA 445
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R G+ + L+ L+D+ + G + AL VF + V+ W+ MI L + G A
Sbjct: 386 IKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAA 445
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M +P+ TF V+ AC + +++G+ H + G +M + ++D
Sbjct: 446 IDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVD 505
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ + G ++ ++ ++M S W ++
Sbjct: 506 ILGRAGFLEEAMELINEMSTTPSASVWGALL 536
>gi|224136754|ref|XP_002322407.1| predicted protein [Populus trichocarpa]
gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 79/144 (54%), Gaps = 2/144 (1%)
Query: 18 KLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
KL+ L S G + A VF ++ R F WN +I T G A+ LY M G
Sbjct: 49 KLVRLYSSCGDVEVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDAMALYFQMEEEGV 108
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PD+FTFP V+KAC I G+ VH V+ GF+ D FV + L+D+Y KCGD+ R+
Sbjct: 109 EPDQFTFPRVLKACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDMYAKCGDIVKARR 168
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FDK+ + +SW +M++G G
Sbjct: 169 IFDKIDCKDSISWNSMLTGYIRHG 192
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++R G +ND ++ L+D+ + G A +F +I C +WN M+ G
Sbjct: 136 RDLVRLGFANDGFVLNALVDMYAKCGDIVKARRIFDKIDCKDSISWNSMLTGYIRHGLIA 195
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL ++ M+ +G D ++ A ++S E ++HG V+ G D + ++L+
Sbjct: 196 EALHTFHSMVHDGMELDSVAVSTIL-ANVSSF--EVAVQIHGWIVRRGMEWDFSIANSLI 252
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y +D R +FD M + +VSW ++IS
Sbjct: 253 AVYSNGRKLDRARWLFDHMPKKDIVSWNSIISA 285
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G R D F +++ C AIE G ++H L R+ + S L+ LY CGDV+
Sbjct: 4 GIRIDTQIFSSLLETCYRLNAIELGVKIHRLIPINLLRRNAGISSKLVRLYSSCGDVEVA 63
Query: 134 RKMFDKM--RVRSVVSWTTMISGLAASG 159
++FD+M R S W ++I+G SG
Sbjct: 64 HQVFDEMFKRGESAFPWNSLIAGYTESG 91
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G+ D + L+ + S K D A +F + + +WN +I A D L+A
Sbjct: 236 IVRRGMEWDFSIANSLIAVYSNGRKLDRARWLFDHMPKKDIVSWNSIISAHCKD---LKA 292
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
L + LM +G PDK TF ++ AC ++ G+ + L +KA + + ++ + ++
Sbjct: 293 LTYFELMERDGALPDKITFVSLLSACAHLGLVKDGERLFSL-MKAKYQINPIMEHYACMV 351
Query: 122 DLYLKCG 128
+LY + G
Sbjct: 352 NLYGRAG 358
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G +D + L+ + G D A VF + V T+N+MI G +
Sbjct: 187 QVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEK 246
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L+ M GF+P++ +F ++ C A+ GK VH + G D+ V + L+
Sbjct: 247 AFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIR 306
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+ CG ++G R++FDKM+VR VVSWT MI G A + +++ A
Sbjct: 307 MYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDA 348
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D + L+ + G + A VF +++ V +W +MIR + + A L+
Sbjct: 293 GLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLF 352
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G +PD+ T+ +I AC +S + +E+H V+AGF D+ V + L+ +Y KC
Sbjct: 353 ATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKC 412
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + R++FD M R VVSW+ MI +G
Sbjct: 413 GAIKDARQVFDAMSRRDVVSWSAMIGAYVENG 444
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G + + L+ L S G A F + V TWN +I G +A
Sbjct: 87 IIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEA 146
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M+ P TF V+ AC + ++ GKE H +K GF D + + L+ +
Sbjct: 147 FALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSM 206
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+K G +DG R++FD + R V ++ MI G A SGD + A
Sbjct: 207 YVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKA 247
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G D L+ L+ + + G A VF + V +W+ MI A +G +
Sbjct: 389 QVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEE 448
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++LM N PD T+ ++ AC A++ G E++ A+KA + V + L++
Sbjct: 449 AFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALIN 508
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +K G ++ R +F+ M R VV+W MI G + G+ A
Sbjct: 509 MNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREA 550
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ +G + A +F + V TWN+MI ++ G++ +AL L++ M+ FRP+
Sbjct: 506 LINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPN 565
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC + +E+G+ + G M + ++DL + G++D +
Sbjct: 566 SVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLI 625
Query: 138 DKMRVRSVVS-WTTMISGLAASGDLDAA 164
++M ++ S W+T+++ G+LD A
Sbjct: 626 NRMPLKPNSSIWSTLLAACRIYGNLDVA 653
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D T+ + + C+ GK+V +++G +++ +TL+ L+ CG++ R+ F
Sbjct: 60 DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D + ++VV+W +I+G A G + A
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEA 146
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQ-IRCPHVFTWNLMIRALTIDGSSLQALLLYN- 68
+ ++ K + + S +G H++L+F+ + P++F +N +++A + + + +N
Sbjct: 56 DPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNN 115
Query: 69 -LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
L++ N PD++TF V+KAC + +G++VH K G ++FV+++L+DLY K
Sbjct: 116 QLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKV 175
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G +K+FD+M VR VVSW T+ISG SG +D A
Sbjct: 176 GCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 12 DQLLVRKLLDLCS------FYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D+++VR ++ + F G D A +VF + ++ +W+ MI + A+
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIE 245
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G P+ T V+ AC A++ GK +H + +F+ + L D+Y
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMY 305
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG V + +F +M R V+SW+ +I GLA G + A
Sbjct: 306 AKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEA 345
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ V +W+++I L + G + +A + MI +G P+ +F ++ AC +
Sbjct: 317 VFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGL 376
Query: 95 IEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMI 152
++KG E + + G + + ++DL + G +D + + M ++ +V+ W ++
Sbjct: 377 VDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALL 436
Query: 153 SG 154
G
Sbjct: 437 GG 438
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR GL DQ L+ + S + VF ++ P + WN +I+ + +
Sbjct: 32 RIIRKGLEQDQNLISIFISSSSSSLSY--SSSVFERVPYPGTYLWNHLIKGYSNKFLFFE 89
Query: 63 ALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L M+ GF RPD++TFP V+K C + G VHGL ++ GF +D+ + ++ +
Sbjct: 90 TVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGFDKDVVLGTSFV 149
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D Y KC D+ RK+F +M R+VVSWT +I SG+L+ A
Sbjct: 150 DFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEA 192
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F R V W+ +I +G +A +++ M +PD+F ++ AC
Sbjct: 257 LFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGC 316
Query: 95 IEKGKEVHGLAVKA--GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
E ++V ++ FS +V L+D+ KCG +D K+F++M R +VS+ +M+
Sbjct: 317 FELCEKVDSYLHQSMNKFS-SHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMM 375
Query: 153 SGLAASG 159
G+A G
Sbjct: 376 EGMAIHG 382
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 45/164 (27%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G D +L +D FYGK A VF ++ +V +W +I A G
Sbjct: 133 VLRIGFDKDVVLGTSFVD---FYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGEL 189
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A +++LM P+ R++ + L
Sbjct: 190 EEAKRMFDLM------PE---------------------------------RNLGTWNAL 210
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D +K GD+ RK+FD+M R ++S+T+MI G A GD+ +A
Sbjct: 211 VDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSA 254
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+ ++ L+D+ + G D A +F ++ + ++ M+ + I G +A+ L+ M
Sbjct: 335 SSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKM 394
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG---FSRDMFVQSTLMDLYLKC 127
+ G PD+ F ++K C S +E+G L K S D + S +++L +
Sbjct: 395 VDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYSILASPDHY--SCIVNLLSRT 452
Query: 128 GDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
G + ++ M + S W +++ G + G+ + A
Sbjct: 453 GKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIA 490
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++ G +L V +LL + + +A +VF +I P+ WN MIRA +
Sbjct: 33 QLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDP 92
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ALLLY+ M+ + + +TFPF++KAC A A+ + ++H +K GF +++ ++L
Sbjct: 93 EEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSL 152
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y G + +FD + R +VSW TMI G G+++ A
Sbjct: 153 LRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMA 196
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F + +V +W MI G +AL L M+ G +PDK T +
Sbjct: 191 GNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSL 250
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E+GK +H K D + L+D+Y+KCG++ +F K+ + V
Sbjct: 251 SACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVY 310
Query: 147 SWTTMISGLAASG 159
+WT +I G A G
Sbjct: 311 TWTAIIGGFAVHG 323
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ G+ ALLVFS++ V+TW +I + G +AL + M
Sbjct: 277 DPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQ 336
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G +P FTF V+ AC + +E+GK + ++ M ++DL + G +
Sbjct: 337 KAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFL 396
Query: 131 DGGRKMFDKMRVRSVVS-WTTMISG 154
++ + M ++ + W ++++
Sbjct: 397 KEAKEFVESMPIKPNAAIWGSLLNA 421
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+F N +IR + G +A+LLY M+ G P+ +TFPFV+ C A +G +VHG
Sbjct: 96 LFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHG 155
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
VK G D+F+Q+ L+ Y +CG +D G K+F+ M R+VVSWT++I G A
Sbjct: 156 SVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYA 208
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
++++V L+D+ G D A +F + ++ +N ++ G + +AL + + M+
Sbjct: 225 NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEML 284
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-----KAGFSRDMFVQSTLMDLYLK 126
G RPD+ T I A + + GK HG V K G DM + + L+D++ +
Sbjct: 285 QQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFAR 344
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
CGD ++F+KM R V +WT I +A G+ + A
Sbjct: 345 CGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGA 382
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D L L+D+ + G A+ VF+++ V W I + ++G+ A
Sbjct: 323 IEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGA 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+N M+ G +PD F V+ AC +E+G + L G S + ++DL
Sbjct: 383 TGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDL 442
Query: 124 YLKCGDVDGGRKMFDKMRVRSV----VSWTTMISGLAASGDLDAA 164
+ G + R+ FD ++ + V W ++++ +++ A
Sbjct: 443 LGRAGLL---REAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMA 484
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I++ GL ND L KLL S Y A LV + P+VF+++ +I A +
Sbjct: 39 ILKTGLFNDTHLATKLL---SHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL ++ M+ G PD P +KAC A++ ++VHG+A +GF D FVQS+L
Sbjct: 96 HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+KC + ++FD+M VVSW+ +++ A G +D A
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEA 199
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 27 GKTDHALLVFSQIRCP----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ + +L +F Q++ +V +W MI + +G ++AL L+ M G +P+ T
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTI 389
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
P ++ AC A+ GK H +++ G S D++V S L+D+Y KCG + R FD +
Sbjct: 390 PCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPT 449
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
+++V W +I+G A G A
Sbjct: 450 KNLVCWNAVIAGYAMHGKAKEA 471
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 27 GKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G D A +FS++ P++ +WN MI G +A+L++ M GF PD T
Sbjct: 194 GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTI 253
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+ A + G +HG +K G D V S L+D+Y KC ++FD+M
Sbjct: 254 SSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDH 313
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
V S I GL+ +G ++++
Sbjct: 314 MDVGSCNAFIFGLSRNGQVESS 335
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+S D + L+D+ + G+ + + F I ++ WN +I + G + +A+
Sbjct: 413 LRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAM 472
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDL 123
+++LM +G +PD +F V+ AC S E+G + ++ K G + + ++ L
Sbjct: 473 EIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTL 532
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMIS 153
+ G ++ M +M V W ++S
Sbjct: 533 LSRAGKLEQAYAMIRRMPVNPDACVWGALLS 563
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 22 LCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-P 77
L + Y + HA +F ++ P +F+WN M+R G AL L+ M+ +G P
Sbjct: 52 LATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLP 111
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
DKFT+P VIKAC I+ G +HG K G+ D FVQ+TL+ +Y+ G+ + + +F
Sbjct: 112 DKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVF 171
Query: 138 DKMRVRSVVSWTTMISG 154
D M+ R+V+SW TMI+G
Sbjct: 172 DPMQERTVISWNTMING 188
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++G +D + LL + G+ + A LVF ++ V +WN MI + +
Sbjct: 138 QTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAED 197
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ +Y M+ G PD T V+ AC +E G+EVH L + GF ++ V++ L+D
Sbjct: 198 AVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVD 257
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+KCG + + M + VV+WTT+I+G +GD +A
Sbjct: 258 MYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSA 299
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 13 QLLVRK-LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
++VR L+D+ G+ A L+ + V TW +I ++G + AL+L +M
Sbjct: 248 NIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQ 307
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
C G +P+ + ++ AC + + + GK +H A++ ++ V++ L+++Y KC +
Sbjct: 308 CEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGN 367
Query: 132 GGRKMFDKMRVRSVVSWTTMISGL 155
K+F + W ++SG
Sbjct: 368 LSYKVFMGTSKKRTAPWNALLSGF 391
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 50/97 (51%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN ++ + + +A+ L+ M+ +PD TF ++ A +++ +H +
Sbjct: 384 WNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLI 443
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
++GF + V S L+D+Y KCG + ++F+ + ++
Sbjct: 444 RSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLK 480
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 5/141 (3%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR---PDKFTFP 83
G +A +F ++R +N MI+ G +A+ ++ M+ G + PD +T+P
Sbjct: 69 GYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEML--GSKDCCPDNYTYP 126
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
FVIKAC L +E G+ +HGL + + F +FV ++L+ +Y+ CG+V+ RK+FD M+ +
Sbjct: 127 FVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEK 186
Query: 144 SVVSWTTMISGLAASGDLDAA 164
SVVSW TMI+G +G + A
Sbjct: 187 SVVSWNTMINGYFKNGFANTA 207
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A VF ++ V +WN MI +G + AL+++N M+ +G D + V+
Sbjct: 171 GEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVL 230
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC +E G+ VHGL + + + V + L+D+Y KCG +D R +FD M R VV
Sbjct: 231 PACGYLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEARLVFDNMVERDVV 289
Query: 147 SWTTMISGLAASGDLDAA 164
SWT+MI+G +GD +A
Sbjct: 290 SWTSMINGYILNGDAKSA 307
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 7 YGLSNDQLLVRK-----LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+GL +++L +K L+D+ + G D A LVF + V +W MI ++G +
Sbjct: 246 HGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAK 305
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL L+ +M G RP+ T ++ AC + ++ G+ +HG +K ++ V+++L+
Sbjct: 306 SALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLI 365
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D+Y KC + +F + + V W ++SG
Sbjct: 366 DMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSG 398
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF++ WN ++ + + +A+ L+ M+ G + T ++ A
Sbjct: 380 VFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILAD 439
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMI 152
++ ++ +++GF ++ V ++L+D+Y KCG ++ K+F+ + V+ + W+ +I
Sbjct: 440 LQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIII 499
Query: 153 SGLAASGDLDAA 164
+G G + A
Sbjct: 500 AGYGMHGHGETA 511
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P + ++K A+ ++ K++H + +G + ++S L+ Y CG V RK+
Sbjct: 19 PKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGL-LSIDIRSVLVATYAHCGYVHNARKL 77
Query: 137 FDKMRVRSVVSWTTMISGLAASGD 160
FD++R R + + MI A GD
Sbjct: 78 FDELRQRGTLLYNFMIKMYIAKGD 101
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 91/156 (58%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G+ + + KLL + G+ A VF ++ +++ W MI G + A
Sbjct: 144 IIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDA 203
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +Y+ M +P++ T+ ++KAC + ++ GK++H +++GF D+ V++ L+++
Sbjct: 204 MRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNM 263
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KCG ++ + +FDKM R+V+SWT MI GLA G
Sbjct: 264 YVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYG 299
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G +D + L+++ G + A L+F ++ +V +W +MI L G +A
Sbjct: 245 IIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 304
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M GF P+ +T+ ++ A ++ A+E KEVH AV AG + D+ V + L+ +
Sbjct: 305 FHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHM 364
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G +D R +FD M R + SWT MI GLA G
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHG 400
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 70/133 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G +A VF + +V TW +MI L G A + M+ G PD T+ ++
Sbjct: 673 GNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSIL 732
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++ A+E KEVH AV AG D+ V + L+ +Y KCG +D R +FD M R V
Sbjct: 733 SACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVF 792
Query: 147 SWTTMISGLAASG 159
SWT MI GLA G
Sbjct: 793 SWTVMIGGLAQHG 805
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A L+F ++ HV TWN MI +AL L+ M GF PD TF ++
Sbjct: 573 GSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINIL 632
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A + A+E KEVH A AG D+ V + L+ Y KCG+V +++FD M R+V
Sbjct: 633 SANVDEEALEWVKEVHSHATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVT 691
Query: 147 SWTTMISGLAASG 159
+WT MI GLA G
Sbjct: 692 TWTMMIGGLAQHG 704
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL+ D + L+ + + G D A +VF + +F+W +MI L G +A
Sbjct: 347 VNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAF 406
Query: 65 LLYNLMICNGFRPDKFTFPFVIKA-CIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+ M NG P+ T+ ++ A IAS A+E K VH A +AGF D+ + + L+
Sbjct: 407 SLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIH 466
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG +D R +FD M R V+SW M+ GLA +G
Sbjct: 467 MYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNG 503
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 75/149 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D + L+ + + G D A LVF + V +WN M+ L +G +A ++
Sbjct: 453 GFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVF 512
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G PD T+ ++ ++ A+E EVH AV+ G D V S + +Y++C
Sbjct: 513 LQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRC 572
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G +D R +FDK+ VR V +W MI G A
Sbjct: 573 GSIDDARLLFDKLSVRHVTTWNAMIGGAA 601
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 55 TIDGSSLQ---------ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
++DG++ Q A+ + + + G D F++ +++ C+ I K+VH
Sbjct: 85 SVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCI 144
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K+G ++++V + L+ +Y++CG + R++FDK+ +++ WTTMI G A G + A
Sbjct: 145 IKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDA 203
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL +D + L+ + + G D A VF + VF+W +MI L G L+AL
Sbjct: 752 VSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEAL 811
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M GF+P+ +++ V+ AC + +++G ++ + G M + ++DL
Sbjct: 812 DFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDL 871
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ G ++ M + W ++ G+L+ A
Sbjct: 872 LGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMA 913
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 91/161 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II +GL + + K++ + + + HA +F QI P+V WN M++ +++ S +
Sbjct: 89 IINHGLQFNDYITPKIITSFALFKRMRHAHKLFDQIPEPNVSNWNAMLKGYSLNDSHREV 148
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++L+ MI P+ F+FP VIK+ + A ++G+E+H +K+G + FV + L+DL
Sbjct: 149 IVLFRKMISMDILPNCFSFPIVIKSSVKINAFKEGEELHCFVIKSGCRANPFVGTMLIDL 208
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y + ++F +M R+VV+WT+MI G D++ A
Sbjct: 209 YSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIETA 249
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-PDKFTFPFVIKACIASL 93
+F ++ +VF+WN +I G L+ L + M+ +G P+ T V+ AC
Sbjct: 314 LFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSACARLG 373
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
A++ GK VH A G+ ++++ + L+D+Y KCG+V+ +F + + ++SW T+I
Sbjct: 374 ALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIG 433
Query: 154 GLAASG 159
GLA G
Sbjct: 434 GLAVHG 439
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+IK I IE + + LA + RD+ + + ++ Y+ GD+ +++F KM +
Sbjct: 236 MIKGFILCNDIETARRLFELAPQ----RDVVLWNIMISGYIDIGDLVRAQELFHKMPNKD 291
Query: 145 VVSWTTMISGLAASGDLDA 163
V+SW T+++G A GD++A
Sbjct: 292 VMSWNTLLNGYANGGDIEA 310
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + + L+D+ + G ++A++VF + + +WN +I L + G + AL L+
Sbjct: 389 GYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLF 448
Query: 68 NLMICNGFRPDKFTFPFVIKAC 89
+ M G +PD TF V+ AC
Sbjct: 449 SRMKDAGEKPDGITFLGVLCAC 470
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+DL S A VF ++ +V W MI+ + A
Sbjct: 190 VIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIETA 249
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L+ L + D + +I I + + +E+ H + ++D+ +TL++
Sbjct: 250 RRLFEL----APQRDVVLWNIMISGYIDIGDLVRAQELFHKMP-----NKDVMSWNTLLN 300
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y GD++ ++F++M R+V SW +I G A G
Sbjct: 301 GYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHG 337
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G+TD A+ +F Q+ + TWN MI L QAL ++ + +
Sbjct: 290 GETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVM 349
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF ++ C A +A+E+G+++H +K+GF D+ V S L+++Y KCG + K
Sbjct: 350 KPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANK 409
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
F +M R+ V+WT+MISG + G A
Sbjct: 410 AFLEMPTRTFVTWTSMISGYSQHGQPQEA 438
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-A 63
I+YG + + L L + G D AL F +I +V TW MI A D ++
Sbjct: 166 IKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELG 225
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ +G P++FT V+ C L + GK+V + K G ++ V+++ M L
Sbjct: 226 MSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYL 285
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA-----ASGDLDA 163
YL+ G+ D ++F++M S+++W MISG A A DL A
Sbjct: 286 YLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQA 330
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+V TW ++ T++ L ++ M+ G P +T + AC+AS ++ GK+VH
Sbjct: 103 NVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVH 162
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G A+K G + ++L LY K G +D + F ++ ++V++WTTMIS A
Sbjct: 163 GYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACA 216
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 77/165 (46%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G +D ++ L+++ + G A F ++ TW MI + G +
Sbjct: 378 QTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQE 437
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
A+ L+ M G RP++ TF ++ AC + +E+ + + +K + + V +
Sbjct: 438 AIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDM-MKKEYCIEPVVDHYGCM 496
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+D++++ G V+ + + W+++++G + G+++ A
Sbjct: 497 IDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 541
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I++ GL ND L KLL S Y A LV + P+VF+++ +I A +
Sbjct: 39 ILKTGLFNDTHLATKLL---SHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL ++ M+ G PD P +KAC A++ ++VHG+A +GF D FVQS+L
Sbjct: 96 HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+KC + ++FD+M VVSW+ +++ A G +D A
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEA 199
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 27 GKTDHALLVFSQIRCP----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ + +L +F Q++ +V +W MI + +G ++AL L+ M G +P+ T
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTI 389
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
P ++ AC A+ GK H +++ G S D++V S L+D+Y KCG + R FD +
Sbjct: 390 PCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPT 449
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
+++V W +I+G A G A
Sbjct: 450 KNLVCWNAVIAGYAMHGKAKEA 471
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 27 GKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G D A +FS++ P++ +WN MI G +A+L++ M GF PD T
Sbjct: 194 GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTI 253
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+ A + G +HG +K G D V S L+D+Y KC ++FD+M
Sbjct: 254 SSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDH 313
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
V S I GL+ +G ++++
Sbjct: 314 MDVGSCNAFIFGLSRNGQVESS 335
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G+S D + L+D+ + G+ + + F I ++ WN +I + G + +A+
Sbjct: 413 LRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAM 472
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDL 123
+++LM +G +PD +F V+ AC S E+G + ++ K G + + ++ L
Sbjct: 473 EIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTL 532
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMIS 153
+ G ++ M +M V W ++S
Sbjct: 533 LSRAGKLEQAYAMIRRMPVNPDACVWGALLS 563
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGS 59
+II ++ L L++L + G + ALL+FS I H + TW +I L+
Sbjct: 167 QIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFS-ITHHHFKTIVTWTSLITHLSHFNM 225
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
LQAL L+N M C+G P++FTF ++ A A++ + G+++H L K GF ++FV +
Sbjct: 226 HLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTA 285
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y KC D+ ++FD+M R++VSW +MI G + D A
Sbjct: 286 LVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRA 330
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++YGL ++ L+D+ C F+ D + +F + V TWN+++ +
Sbjct: 373 VVKYGLVPLTYVMNSLMDMYFKCRFF---DEGVKLFQCVGDRDVVTWNVLVMGFVQNDKF 429
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A + +M G PD+ +F V+ + + A+ +G +H +K G+ ++M + +L
Sbjct: 430 EEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSL 489
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +Y KCG + ++F+ + +V+SWT MIS G
Sbjct: 490 ITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHG 528
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++G + + L+D+ + A+ VF Q+ ++ +WN MI + +A
Sbjct: 271 IHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRA 330
Query: 64 LLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ +++ P++ + V+ AC + G++VHG+ VK G +V ++LMD
Sbjct: 331 VGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMD 390
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KC D G K+F + R VV+W ++ G + + A
Sbjct: 391 MYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEA 432
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 14/167 (8%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G + ++ L+ + + G A VF I +V +W MI A + G + Q
Sbjct: 473 QIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQ 532
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMF 115
+ L+ M+ G P TF V+ AC + +E+G K++H +
Sbjct: 533 VIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEH----- 587
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDL 161
+ ++DL + G +D ++ + M ++ S W ++ G+L
Sbjct: 588 -YACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNL 633
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I G D LL+ ++DL S GK + A +F ++ V WN++I LT + +
Sbjct: 152 RIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRD 211
Query: 63 ALLLYNLMICNGF--RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL L+ +M + +PDK T +++AC A+E G+ +HG + G++ + + ++L
Sbjct: 212 ALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSL 271
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +Y +CG +D ++FDKM ++VVSW+ MISGL+ +G
Sbjct: 272 ISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNG 310
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F + P V +N M+RA ++ S L+ L +Y M G R D + F +K+CI L+
Sbjct: 83 LFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLS 142
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ G ++H G D + +++MDLY CG + K+FD++ + VV+W +IS
Sbjct: 143 LLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISC 202
Query: 155 LA 156
L
Sbjct: 203 LT 204
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++G + + L L+ + S G+ D A VF ++ +V +W+ MI L+++G +A
Sbjct: 256 IQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREA 315
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMD 122
+ + M NG P TF V+ AC +++G + + + ++ ++D
Sbjct: 316 IEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVD 375
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASG 159
L + G +D ++ M VR + W T++ G
Sbjct: 376 LLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHG 413
>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
Length = 656
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A F+ + P F N+MIR L AL Y M+ G RPD+FTFP V+
Sbjct: 68 GRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVL 127
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
K C + A+ +G+ H +K G D++ ++L+ LY K G V ++FD M R +V
Sbjct: 128 KCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIV 187
Query: 147 SWTTMISGLAASG 159
SW TM+ G ++G
Sbjct: 188 SWNTMVDGYVSNG 200
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +L LL++ GK + + +F QI + +WN MI A +A
Sbjct: 349 VVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEA 408
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ ++ PD FT V+ A + +I + K++H VK G+ + + +M +
Sbjct: 409 IALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHM 468
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y +CG++ R++FDKM + V+SW T+I G A G
Sbjct: 469 YARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQ 505
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL D L+ L + G A VF + + +WN M+ +G A
Sbjct: 146 VIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALA 205
Query: 64 LLLYNLM---ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L + M + G D + AC A+ G+E+HG A++ G +D+ V ++L
Sbjct: 206 LACFREMNDALQVGH--DSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSL 263
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+D+Y KCG+V +F KM +R+VV+W MI G A
Sbjct: 264 VDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYA 299
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 76/149 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR+GL D + L+D+ G A VF+++ V TWN MI ++ + A
Sbjct: 249 IRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAF 308
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M +GF+ + T ++ AC + + G+ VH V+ F + +++ L+++Y
Sbjct: 309 DCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMY 368
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
K G V+ K+F ++ +++VSW MI+
Sbjct: 369 GKVGKVESSEKIFGQITDKTLVSWNNMIA 397
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + L++ ++ + + G + +F ++ V +WN +I I G A
Sbjct: 450 IVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIA 509
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L +++ M C+G P++ TF V+ AC ++ L E KE + + + G + + D
Sbjct: 510 LEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTD 569
Query: 123 L 123
L
Sbjct: 570 L 570
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
++A +F I P F + MIR + S AL YN M+ G PD FT+P ++KAC
Sbjct: 84 NYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKAC 143
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
AI +GK++HG K G D+FVQ++L+++Y +CG+++ +F+K+ +S SW+
Sbjct: 144 TRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWS 203
Query: 150 TMISGLAASG 159
+M S G
Sbjct: 204 SMFSACVGMG 213
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+++ G+ + + VF ++ +W+ M A G +
Sbjct: 159 VFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSEC 218
Query: 64 LLLYNLMIC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L+L+ M C + ++ + AC + A+ G +HG ++ ++ V+++L+
Sbjct: 219 LMLFREM-CRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLV 277
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y+KCG +D +F KM R+ ++++ MISG A G+ ++A
Sbjct: 278 DMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESA 320
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G D+AL +F ++ + T++ MI + G AL +++ MI G PD
Sbjct: 276 LVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPD 335
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
+ ++ AC S +++G+ V G +K G
Sbjct: 336 HVVYVSLLNACSHSGLVKEGRRVFGEMLKEG 366
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G+TD A+ +F Q+ + TWN MI L QAL ++ + +
Sbjct: 330 GETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVM 389
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF ++ C A +A+E+G+++H +K+GF D+ V S L+++Y KCG + K
Sbjct: 390 KPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANK 449
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
F +M R+ V+WT+MISG + G A
Sbjct: 450 AFLEMPTRTFVTWTSMISGYSQHGQPQEA 478
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-A 63
I+YG + + L L + G D AL F +I +V TW MI A D ++
Sbjct: 206 IKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELG 265
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ +G P++FT V+ C L + GK+V + K G ++ V+++ M L
Sbjct: 266 MSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYL 325
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
YL+ G+ D ++F++M S+++W MISG A
Sbjct: 326 YLRKGETDEAMRLFEQMEDASIITWNAMISGYA 358
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G S D + L++ A +F + +V TW ++ T++
Sbjct: 104 MAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALG 163
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M+ G P +T + AC+AS ++ GK+VHG A+K G + ++L L
Sbjct: 164 LEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSL 223
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y K G +D + F ++ ++V++WTTMIS A
Sbjct: 224 YAKLGSLDSALRAFWRIPEKNVITWTTMISACA 256
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C+ + ++ + VHG K G S DMFV ++L++ Y++C R++FD M R+VV+W
Sbjct: 88 CVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTW 147
Query: 149 TTMISG 154
T +++G
Sbjct: 148 TALVTG 153
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 77/165 (46%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G +D ++ L+++ + G A F ++ TW MI + G +
Sbjct: 418 QTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQE 477
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
A+ L+ M G RP++ TF ++ AC + +E+ + + +K + + V +
Sbjct: 478 AIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDM-MKKEYCIEPVVDHYGCM 536
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+D++++ G V+ + + W+++++G + G+++ A
Sbjct: 537 IDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 581
>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 703
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 84/156 (53%), Gaps = 9/156 (5%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFT----WNLMIRALTIDGSSLQA 63
GLS +L+ +LL S Y T H L+ S T +N++I + G LQA
Sbjct: 103 GLSRHPILLPRLL---SVY--TSHPSLLPSAASVAADSTLPLPYNVLISSCLRHGLPLQA 157
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M NG PD FT+P V++AC + + G+ VH A AG ++F Q+ LM +
Sbjct: 158 LAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSM 217
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGD+ RK+FD M R VVSW +MIS AA G
Sbjct: 218 YAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVG 253
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A ++F + CP V TWN M+ + + + +A ++ MIC G +P+ T + C
Sbjct: 363 ARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCAR 422
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
++ G+E+HG VK GF + ++L+D+Y K G + + +FD M ++S+T+M
Sbjct: 423 VANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSM 482
Query: 152 ISGLAASG 159
I+G G
Sbjct: 483 IAGYGMQG 490
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I+++G +LL L+D+ S G+ A VF + + ++ MI + G
Sbjct: 435 HIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTV 494
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
AL L+ MI +G +PD V+ AC S + +G+E+ + + + G M S ++
Sbjct: 495 ALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMI 554
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
DLY + G ++ +M D + W ++ G+++
Sbjct: 555 DLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIE 596
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 46 TWNLMIRALTIDGSSLQ------ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
TWN TI G +Q A+ L M+ G D T + AC + GK
Sbjct: 276 TWN------TIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGK 329
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
E+HGLAV+ + V + L+ +Y +C D++ R +F + VV+W TM+S A S
Sbjct: 330 EIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALS 388
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 5/161 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQA 63
+R G+ ++L+ KLL++ + + +A V P +F +N +I+A + Q
Sbjct: 12 LRNGIDQTKILIEKLLEIPNLH----YAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQC 67
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LY+ M+ + F P++ TF F+ AC + + G+ +H +K+GF D+F + L+D+
Sbjct: 68 FSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDM 127
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G ++ RK+FD+M VR V +W M++G A GD+D A
Sbjct: 128 YTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVA 168
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDKFTFPF 84
+G D AL +F + +V +W MI + +AL L+ M G P+ T
Sbjct: 162 FGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLAS 221
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVR 143
+ A A+E G+ V A K GF ++++V + ++++Y KCG +D K+F+++ +R
Sbjct: 222 IFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLR 281
Query: 144 SVVSWTTMISGLAASGD 160
++ SW +MI GLA G+
Sbjct: 282 NLCSWNSMIMGLAVHGE 298
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQAL 64
+ G + + +L++ + GK D A VF++I ++ +WN MI L + G + L
Sbjct: 244 KNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTL 303
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
LY+ M+ G PD TF ++ AC +EKG+ +
Sbjct: 304 KLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHI 340
>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYG--KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I G N +LV KL+ S + H + V S I P WNL+I + +G +
Sbjct: 68 ISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNP--LPWNLLISSYVNNGLHGE 125
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLM 121
AL Y M+ G RPD FT+P V+KAC L ++ G+EVH + G +++V ++L+
Sbjct: 126 ALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLV 185
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G++D R++F++M R VSW +IS A+ G
Sbjct: 186 SMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRG 223
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA ++F I+ + TWN M+ T S +A L+ M+ +G P+ T ++ C
Sbjct: 332 HADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCA 391
Query: 91 ASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+++GKE H + + GF + + ++L+++Y + G V +++FD +R R V++T
Sbjct: 392 RVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYT 451
Query: 150 TMISGLAASGD 160
++I+G G+
Sbjct: 452 SLIAGYGIQGE 462
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + LL L+++ + GK A VF +R T+ +I I G AL
Sbjct: 409 REGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALK 468
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLY 124
L++ MI + +PD+ T V+ AC S + +G + ++ G + S ++DL+
Sbjct: 469 LFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLF 528
Query: 125 LKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G ++ +K+ M R + W T++ G+ +
Sbjct: 529 GRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHGNTE 567
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
YG + + L+ + +G+ D A +F+Q+ +WN +I G +A L
Sbjct: 172 YGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFEL 231
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASL--------------------------------- 93
+ M G + T+ + C+ +
Sbjct: 232 FEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSH 291
Query: 94 --AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
AI+ G +H A+++ F V++ L+ +Y +C D+ +F ++ +S+ +W +M
Sbjct: 292 IGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSM 351
Query: 152 ISG 154
+SG
Sbjct: 352 LSG 354
>gi|357475145|ref|XP_003607858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508913|gb|AES90055.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 708
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%)
Query: 24 SFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF 80
+FY GK A F ++ V W +I A + G +ALLL + M+ +GF P+++
Sbjct: 293 NFYSKCGKISSAFRTFDRMAKRDVVCWTTIITACSQHGLGHEALLLLSQMLVDGFFPNEY 352
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
T +KAC + A + G ++HG VK D+F+ ++L+D+Y KCG++ +K+FD+M
Sbjct: 353 TICAALKACGENKAFKCGTQLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRM 412
Query: 141 RVRSVVSWTTMISGLAASG 159
+VR+ +WT++ISG A +G
Sbjct: 413 KVRNTATWTSIISGYARNG 431
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ +D + L+D+ + G+ + VF +++ + TW +I +G +A
Sbjct: 377 IVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTSIISGYARNGFGEEA 436
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + LM +K T V+ AC A G+EVH +K+ +M++++TL+
Sbjct: 437 LNFFRLMKRKKVYVNKSTLVCVMTACGTIKASLIGREVHAQKIKSVILTNMYIETTLVWF 496
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +C D + + +R VVSWT +ISG A G
Sbjct: 497 YCRCKDYSHAFNVLKYIPLRDVVSWTAIISGCARLG 532
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 22 LCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
+CS+ GK A VF + + TW +I +A L++ I +G +P+
Sbjct: 192 ICSYLRLGKLAQARKVFDGMSRRNTVTWTAIIDGYLKYDLDDEAFKLFHGSIKHGVQPNS 251
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
F + C + + GK++H +K+ + R++ V S +++ Y KCG + + FD+
Sbjct: 252 KMFVCFMNLCCKRVDLALGKQIHARILKSNW-RNLIVDSAVVNFYSKCGKISSAFRTFDR 310
Query: 140 MRVRSVVSWTTMISGLAASG 159
M R VV WTT+I+ + G
Sbjct: 311 MAKRDVVCWTTIITACSQHG 330
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA V I V +W +I G +AL M+ G P+ +T+ +KAC
Sbjct: 505 HAFNVLKYIPLRDVVSWTAIISGCARLGLETEALEFLREMMEEGVLPNSYTYSSALKAC- 563
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
A L E L+ ++FV S L+ +Y KCG + ++FD M R++VSW
Sbjct: 564 AKL------ETPALS-------NVFVNSALIYMYAKCGYIADAFQVFDNMPERNLVSWKA 610
Query: 151 MISGLAASG 159
MI G A +G
Sbjct: 611 MILGYARNG 619
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+E+ VH +A+K +V + L+ YL+ G + RK+FD M R+ V+WT +I G
Sbjct: 166 VEEVGRVHTIALKCFRGSSTYVDNNLICSYLRLGKLAQARKVFDGMSRRNTVTWTAIIDG 225
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT----DHALLVFSQIRCP-HVFTWNLMIRALTID 57
++I L D L++ K++ +F GK+ ++ ++ IR F++N ++ + +
Sbjct: 28 QLITRDLLRDDLIINKVV---TFLGKSADFASYSSVILHSIRSVLSSFSYNTLLSSYAVC 84
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ Y + NGF PD FTFP V KAC I +GK++HG+ K GF D++VQ
Sbjct: 85 DKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQ 144
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+ Y CG+ K+F +M VR VVSWT +I+G +G
Sbjct: 145 NSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTG 186
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM-ICNGFRPDKFTFPFVIKACI 90
A+ VF ++ +WN MI L S +A+ L++LM +G +PD V+ AC
Sbjct: 258 AMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACA 317
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ A++ G+ VH + AG D + + ++D+Y KCG ++ ++F+ +R ++V +W
Sbjct: 318 SLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNA 377
Query: 151 MISGLAASG 159
++ GLA G
Sbjct: 378 LLGGLAIHG 386
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ G+ D + ++D+ + G + AL +F+ IR +VFTWN ++ L I G L
Sbjct: 330 EYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGL 389
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
++L + M+ GF+P+ TF + AC + +++G+
Sbjct: 390 ESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGR 427
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G +D + L+ G++ +A VF ++ V +W +I T G +A
Sbjct: 132 VTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M P+ T+ V+ + + GK +HGL +K + + L+D+
Sbjct: 192 LDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDM 248
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y+KC + ++F ++ + VSW +MISGL
Sbjct: 249 YVKCEQLSDAMRVFGELEKKDKVSWNSMISGL 280
>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+II D + KL+ + +G A VF + V +W M+ + +G +
Sbjct: 35 HQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYSRNGQTR 94
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L+ LM+ +G RP++FT+ V AC + + G++VH K F D+FVQS LM
Sbjct: 95 EALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDVFVQSALM 154
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
D++L+CG V ++F +M + VV+W ++ GL
Sbjct: 155 DMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGL 188
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
D + L+D+ G A+ +F+++ V WN ++R L AL L M
Sbjct: 145 GDVFVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSM 204
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ PD FTF +KAC A + + +H +K G+ + V +++D Y KC +
Sbjct: 205 LRGAMLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVIGSIIDAYAKCRGL 264
Query: 131 DGGRKMFDKMRVRSVVSWTTMISG 154
R ++D + +VS T +ISG
Sbjct: 265 SSARLIYDSICEPDLVSSTALISG 288
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID-GSSLQ 62
II+ G +++++ ++D + A L++ I P + + +I ++D S
Sbjct: 239 IIKLGYWGEKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSED 298
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ + G R D ++ C ++ G ++H K D+ + + ++D
Sbjct: 299 AMELFCKIHRKGLRIDGVLLSSLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNAVVD 358
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G+ R+ FD+M R+VVSWT++I+ +G
Sbjct: 359 MYAKAGEFADARRAFDEMPYRNVVSWTSLITACGKNG 395
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D + ++++C++ +G+ VH + + D+ + + L+ Y K GDV RK+F
Sbjct: 12 DPAFYYSLLQSCMSCF--RRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVF 69
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D M RSVVSWT M+SG + +G A
Sbjct: 70 DGMPHRSVVSWTAMVSGYSRNGQTREA 96
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
D L ++D+ + G+ A F ++ +V +W +I A +G A+ L++ M
Sbjct: 348 TDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSLITACGKNGFGEDAVSLFDRM 407
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+ +G +P+ TF ++ AC S KG E + K G S+ +DL + G
Sbjct: 408 VEDGVKPNDVTFLSLLSACGHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDLLARGGQ 467
Query: 130 VDGGRKMFDKMRVR 143
+ K+ + +
Sbjct: 468 LKDAWKLVQNIDIE 481
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ V +W MI A G QAL +++ M+ GFRP++FT V+
Sbjct: 498 GDVASASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVL 557
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A+ GK++H +K + D+ + S L+ +Y +CG+V + +FD M R+ +
Sbjct: 558 KACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTI 617
Query: 147 SWTTMISGLAASGDLDAA 164
+WT+MISG A SG + A
Sbjct: 618 TWTSMISGYAQSGHGEKA 635
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 78/138 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ +A + + +W +I G +++AL + M+ +G +P+ +T+ +
Sbjct: 700 GEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSAL 759
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ G+++HG K ++FV S+L+D+Y++CG VD R++FD M ++V
Sbjct: 760 KACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVFDAMPEHNLV 819
Query: 147 SWTTMISGLAASGDLDAA 164
+W +I+G A +G + A
Sbjct: 820 TWKVIITGFAQNGLCEEA 837
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 21 DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L S Y + D A VF ++ V +W M+ A G + + L+ M+ +G +
Sbjct: 389 NLISAYARFDEVSDARKVFDEMPERSVVSWTAMMNAYLKLGHYGEVVRLFFDMVGSGVQG 448
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++K+C + G++VH VK G+S ++ V S + Y +CGDV +F
Sbjct: 449 NSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIVDSAIAHFYAQCGDVASASAIF 507
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
DKM R V+SWTTMI+ G
Sbjct: 508 DKMASRDVISWTTMITAYVQHG 529
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 2 QKIIRYG-----------LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G ND + L+ + + G+ A VF + + TW M
Sbjct: 563 EKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSM 622
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G +A+ L+ M + T ++ AC + ++ GKE+H +K
Sbjct: 623 ISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSM 682
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ + STL+ Y KCG+ ++ + M R +SWT +ISG
Sbjct: 683 EDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISG 726
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD ++ C + + + VH +AV++ S FV + L+ Y + +V RK+
Sbjct: 350 PDAEALASSLRDCGGADGVRR---VHAVAVRSLDSLGTFVANNLISAYARFDEVSDARKV 406
Query: 137 FDKMRVRSVVSWTTMISG 154
FD+M RSVVSWT M++
Sbjct: 407 FDEMPERSVVSWTAMMNA 424
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q ++R G+ D +L L+D+ + G A VF ++ + TWN+M+ +G
Sbjct: 174 QDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFD 233
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A + M+ G +PDK T+ ++ AC + +E+G +H + +KAGF D+ V + L+
Sbjct: 234 EAFEFFKAMLDEGQKPDKVTYISILNACTS---LEQGTLLHSVIMKAGFELDVRVGTALV 290
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++ KCG V K+F K+ R+VVSWT++IS A +G+ + A
Sbjct: 291 NMFSKCGSVVDALKVFQKLPQRNVVSWTSVISAYAQAGEPERA 333
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D + L+++ S G AL VF ++ +V +W +I A G +A
Sbjct: 274 IMKAGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNVVSWTSVISAYAQAGEPERA 333
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M+ G DK + ++ C IEKGK VHG V++G + D+ ++ L+D+
Sbjct: 334 LECYAKMLNEGMVADKRAYTTILNVCAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDM 393
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y+KCG + ++F M VR VVSWTT+I G
Sbjct: 394 YVKCGRLKDAYRLFQDMNVRDVVSWTTLIEG 424
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF ++ +FT+ +M+ G A +Y M D+ TF ++ C
Sbjct: 103 ARQVFDRMVERDMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTILNVCST 162
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
++EKG +VH V+ G D+ + +TL+D+Y KCG++ ++F +M R +V+W M
Sbjct: 163 LRSLEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDIVTWNIM 222
Query: 152 ISGLAASGDLDAA 164
+ G A +G D A
Sbjct: 223 VGGAARNGYFDEA 235
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G++ D + L+D+ G+ A +F + V +W +I +A
Sbjct: 375 IVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVRDVVSWTTLIEGWVQHRQYQEA 434
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +N M G P+ TF V+KAC ++ GK +H V+AG + + ++ L D+
Sbjct: 435 LDTFNDMQLEGVMPNTVTFLGVLKACAGMGSLVDGKRIHARIVEAGLAENAHIRHALADM 494
Query: 124 YLKC 127
Y KC
Sbjct: 495 YAKC 498
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
IR L ++G +L +++ G P + + +++ C + +GK VH K+ F
Sbjct: 24 IRDLCLNGQPKNSL---HILEQRGIEPSSYAYVCLLRRCTHMKDLAEGKYVHAHMAKSDF 80
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
FV + L+++Y+KCG + R++FD+M R + ++T M++G A G
Sbjct: 81 VPTTFVLNALVNMYMKCGSLVDARQVFDRMVERDMFTYTMMLTGYAKLG 129
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G+TD A+ +F Q+ + TWN MI L QAL ++ + +
Sbjct: 330 GETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVM 389
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF ++ C A +A+E+G+++H +K+GF D+ V S L+++Y KCG + K
Sbjct: 390 KPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANK 449
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
F +M R+ V+WT+MISG + G A
Sbjct: 450 AFLEMPTRTFVTWTSMISGYSQHGQPQEA 478
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-A 63
I+YG + + L L + G D AL F +I +V TW MI A D ++
Sbjct: 206 IKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELG 265
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ +G P++FT V+ C L + GK+V + K G ++ V+++ M L
Sbjct: 266 LSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYL 325
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
YL+ G+ D ++F++M S+++W MISG A
Sbjct: 326 YLRKGETDEAMRLFEQMEDASIITWNAMISGYA 358
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G D + L++ G A +F + +V TW ++ T++
Sbjct: 104 MAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALG 163
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M+ G P +T + AC+AS ++ GK+VHG A+K G + ++L L
Sbjct: 164 LEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSL 223
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y K G +D + F ++ ++V++WTTMIS A
Sbjct: 224 YAKLGSLDSALRAFWRIPEKNVITWTTMISACA 256
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C+ ++ + VHG K G DMFV ++L++ Y++CG R++FD M R+VV+W
Sbjct: 88 CVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTW 147
Query: 149 TTMISG 154
T +++G
Sbjct: 148 TALVTG 153
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 77/165 (46%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G +D ++ L+++ + G A F ++ TW MI + G +
Sbjct: 418 QTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQE 477
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
A+ L+ M G RP++ TF ++ AC + +E+ + + +K + + V +
Sbjct: 478 AIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDM-MKKEYCIEPVVDHYGCM 536
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+D++++ G V+ + + W+++++G + G+++ A
Sbjct: 537 IDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 581
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH-ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IR L D L+ ++ S H A LVF+QI CP + WN MIR L+ ++
Sbjct: 40 LIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVE 99
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ +Y M G + T F+ KAC I G+++H A+K GF +FV + L+
Sbjct: 100 AIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIH 159
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+Y CG + +KMFD M R +VSW T+I G +
Sbjct: 160 MYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYS 193
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +W MI + A+ L+ M+ +PDK T V+ AC ++ G VH
Sbjct: 314 VISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHH 373
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
+ G D++V ++L+D+Y KCG V+ ++F +M+ + VSWT++ISGLA +G ++
Sbjct: 374 YIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANS 433
Query: 164 A 164
A
Sbjct: 434 A 434
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R+G+ D + L+D+ G + AL VF +++ +W +I L ++G + A
Sbjct: 375 IRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSA 434
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-------VHGLAVKAGFSRDMFV 116
L L++ M+ G +P TF ++ AC + + KG E VHGL M
Sbjct: 435 LDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPA------MKH 488
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDL 161
++DL + G++D + KM V VV W ++S G++
Sbjct: 489 YGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNV 534
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + + L+ + + G+ A +F + + +WN +I + + L
Sbjct: 143 LKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVL 202
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M + D T +I AC E + + D+++ +TL+D+Y
Sbjct: 203 RLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMY 262
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + + +FD+MR R++VSW ++ G A G+L AA
Sbjct: 263 GRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAA 302
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 82/141 (58%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL + +G A VF ++ ++F+WN+++ G +AL LY+ M+ G +PD
Sbjct: 147 LLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPD 206
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+TFP V++ C + +G+E+H ++ GF D+ V + L+ +Y+KCGDV+ R +FD
Sbjct: 207 VYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFD 266
Query: 139 KMRVRSVVSWTTMISGLAASG 159
KM R +SW MISG +G
Sbjct: 267 KMPNRDRISWNAMISGYFENG 287
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IRYG +D +V L+ + G + A LVF ++ +WN MI +G L+
Sbjct: 233 VIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEG 292
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ +MI PD T VI AC G+++HG ++ F RD + ++L+ +
Sbjct: 293 LRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPM 352
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y G ++ +F + R +VSWT MISG
Sbjct: 353 YSSVGLIEEAETVFSRTECRDLVSWTAMISG 383
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R D + L+ + S G + A VFS+ C + +W MI +A
Sbjct: 334 VLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKA 393
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y +M G PD+ T V+ AC ++ G +H +A + G V ++L+D+
Sbjct: 394 LETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDM 453
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC +D ++F +++VSWT++I GL
Sbjct: 454 YAKCKCIDKALEIFHSTLEKNIVSWTSIILGL 485
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + ++ L+D+ + D AL +F ++ +W +I L I+ +AL +
Sbjct: 439 GLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFF 498
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
MI +P+ T V+ AC A+ GKE+H A++ G S D F+ + ++D+Y++C
Sbjct: 499 REMI-RRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRC 557
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G ++ K F + V SW +++G A G
Sbjct: 558 GRMEYAWKQFFSVD-HEVTSWNILLTGYAERG 588
>gi|302773996|ref|XP_002970415.1| hypothetical protein SELMODRAFT_93286 [Selaginella moellendorffii]
gi|300161931|gb|EFJ28545.1| hypothetical protein SELMODRAFT_93286 [Selaginella moellendorffii]
Length = 581
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + + L+ + S G+ D A F +IR V W+ ++ G + +AL LY
Sbjct: 295 GLDRENAVGAALIAMYSRSGRLDEAWTAFEKIREKSVVAWSSLMTGYAQQGKNWRALQLY 354
Query: 68 NLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYL 125
MI PDKFTF ++ C A E+G+ VH + GF RD + ++L+D++
Sbjct: 355 EEMILESEVLPDKFTFSTILGVCAELGAAEEGRRVHSQMLACLGFERDAVLGTSLIDMFA 414
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++D + +FD M R+V +WTT+++GLA G
Sbjct: 415 KCGNIDAAKLVFDGMLERNVQTWTTLVAGLARHG 448
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+VF+W+++I A +G +AL L+ M G +P+ FT V+ AC + + +H
Sbjct: 23 NVFSWSIIISAYAQNGHFREALQLFQAMDLEGMQPNSFTLSSVVAACSGLEDPLQARAIH 82
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDG----GRKMFDKMRVRSVVSWTTMISGLAAS 158
V AGF D FV + ++ ++ +C DG + +FD M RS+VSW +ISG
Sbjct: 83 SRIVGAGFGSDEFVATAMVAMFSRC---DGCWIDAKAVFDGMASRSIVSWNAVISGAIRG 139
Query: 159 GDLDAA 164
G+ D A
Sbjct: 140 GEKDQA 145
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD----HALLVFSQIRCPHVFTWNLMIRALTIDG 58
+I+ G +D+ + ++ + + + D A VF + + +WN +I G
Sbjct: 84 RIVGAGFGSDEFVATAMV---AMFSRCDGCWIDAKAVFDGMASRSIVSWNAVISGAIRGG 140
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
QAL L M G +PD+FT ++ AC + + + +E H +GF + VQ+
Sbjct: 141 EKDQALQLLWRMDNEGTKPDQFTLTTILSACSS---VRECREFHARIQASGFQAMLAVQN 197
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
LMD Y KCG + + +FD+M R V+SWT +I+
Sbjct: 198 ALMDCYGKCGSLRDAKMVFDEMVERDVISWTCLIA 232
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-- 76
L+D G A +VF ++ V +W +I + + S +A+ +Y LM + R
Sbjct: 199 LMDCYGKCGSLRDAKMVFDEMVERDVISWTCLIASYVHNDESREAIAIYELMEESARRSL 258
Query: 77 ------PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
D TF + C +++GK +H A AG R+ V + L+ +Y + G +
Sbjct: 259 SSLQPNADGVTFAAALGVCTNH--VDRGKSLHSFARDAGLDRENAVGAALIAMYSRSGRL 316
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D F+K+R +SVV+W+++++G A G
Sbjct: 317 DEAWTAFEKIREKSVVAWSSLMTGYAQQG 345
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D +L L+D+ + G D A LVF + +V TW ++ L G QA+
Sbjct: 398 GFERDAVLGTSLIDMFAKCGNIDAAKLVFDGMLERNVQTWTTLVAGLARHGRGEQAVWWL 457
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
M GF D+ T ++ C I+ G+
Sbjct: 458 RRMSMEGFCADQATVTTILHGCNHGGLIDAGR 489
>gi|302793458|ref|XP_002978494.1| hypothetical protein SELMODRAFT_108969 [Selaginella moellendorffii]
gi|300153843|gb|EFJ20480.1| hypothetical protein SELMODRAFT_108969 [Selaginella moellendorffii]
Length = 644
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + + L+ + S G+ D A F +IR V W+ ++ G + +AL LY
Sbjct: 358 GLDRENAVGAALIAMYSRSGRLDEAWTAFEKIREKSVVAWSSLMTGYAQQGKNWRALQLY 417
Query: 68 NLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYL 125
MI PDKFTF ++ C A E+G+ VH + GF RD + ++L+D++
Sbjct: 418 EEMILESEVLPDKFTFSTILGVCAELGAAEEGRRVHSQMLACLGFERDAVLGTSLIDMFA 477
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++D + +FD M R+V +WTT+++GLA G
Sbjct: 478 KCGNIDAAKLVFDGMLERNVQTWTTLVAGLARHG 511
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+VF+W+++I A +G +AL L+ M G +P+ FT V+ AC + + +H
Sbjct: 23 NVFSWSIIISAYAQNGHFREALQLFQAMDLEGMQPNSFTLSSVVAACSGLEDPLQARAIH 82
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDG----GRKMFDKMRVRSVVSWTTMISGLAAS 158
V AGF D FV + ++ ++ +C DG + +FD M RSVVSW +ISG
Sbjct: 83 SRIVGAGFGSDEFVATAMVAMFSRC---DGCWIDAKAVFDGMASRSVVSWNAVISGAIRG 139
Query: 159 GDLDAA 164
G+ D A
Sbjct: 140 GEKDQA 145
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD----HALLVFSQIRCPHVFTWNLMIRALTIDG 58
+I+ G +D+ + ++ + + + D A VF + V +WN +I G
Sbjct: 84 RIVGAGFGSDEFVATAMV---AMFSRCDGCWIDAKAVFDGMASRSVVSWNAVISGAIRGG 140
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
QAL L M G +PD+F+ ++ AC + + + +E H +GF + VQ+
Sbjct: 141 EKDQALRLLWRMDNEGTKPDQFSLTTILSACSS---VRECREFHARIQASGFQAMLAVQN 197
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+LMD Y KCG + + +FD+M R V+SWT +I+
Sbjct: 198 SLMDCYGKCGSLRDAKMVFDEMVERDVISWTCLIA 232
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 1 MQKIIRYGLSNDQLLV---RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
M++ R LS+ Q V + + CS G + ++S+I +V WN +I ++
Sbjct: 250 MEESARRSLSSLQPNVCTFTAVAEACSIVGALEQGRALYSRI---NVAAWNFVIASIAQA 306
Query: 58 GSSLQA--LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
SS A L L+ M G + D TF + C +++GK +H A AG R+
Sbjct: 307 DSSAAADVLELFGEMALEGTKADGVTFAAALGVCTNH--VDRGKSLHSFARDAGLDRENA 364
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V + L+ +Y + G +D F+K+R +SVV+W+++++G A G
Sbjct: 365 VGAALIAMYSRSGRLDEAWTAFEKIREKSVVAWSSLMTGYAQQG 408
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D +L L+D+ + G D A LVF + +V TW ++ L G QA+
Sbjct: 461 GFERDAVLGTSLIDMFAKCGNIDAAKLVFDGMLERNVQTWTTLVAGLARHGRGEQAVWWL 520
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
M GF D+ T ++ C I+ G+
Sbjct: 521 RRMSMEGFCADQATVTTILHGCNHGGLIDAGR 552
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR- 76
L+D G A +VF ++ V +W +I + + S +A+ +Y LM + R
Sbjct: 198 SLMDCYGKCGSLRDAKMVFDEMVERDVISWTCLIASYVHNDESREAIAIYELMEESARRS 257
Query: 77 -----PDKFTFPFVIKACIASLAIEKGKEVH 102
P+ TF V +AC A+E+G+ ++
Sbjct: 258 LSSLQPNVCTFTAVAEACSIVGALEQGRALY 288
>gi|218200986|gb|EEC83413.1| hypothetical protein OsI_28873 [Oryza sativa Indica Group]
Length = 481
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L + G D A+LVF + TWN +I G AL L++ M G RPD
Sbjct: 177 LINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITEYAQIGCGGVALELFDRMGIEGVRPD 236
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F + AC A +E G+++HG A ++ D V + L+DLY KC + RK+FD
Sbjct: 237 RFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFD 296
Query: 139 KMRVRSVVSWTTMISG 154
M R++VSWTTMISG
Sbjct: 297 CMEYRNLVSWTTMISG 312
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 78/159 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R D ++ L+DL + A +F + ++ +W MI + + +A+
Sbjct: 265 RSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAIT 324
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M G++PD F ++ +C + AI +G+++H +KA D +V++ L+D+Y
Sbjct: 325 MFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYA 384
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC + R +FD + +S+ MI G + + DL A
Sbjct: 385 KCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEA 423
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-L 69
+D L LL S G+ A +F ++ ++ +W +I T G A+ L+
Sbjct: 67 DDVFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFAAF 126
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+ P++F V++AC S A+ G++VHG+AVK +++V + L++LY K G
Sbjct: 127 QKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGC 186
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D +F + VR+ V+W T+I+ A G
Sbjct: 187 MDEAMLVFHALPVRTPVTWNTVITEYAQIG 216
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+I+ L D+ + L+D+ Y K +H A VF + ++N MI + +
Sbjct: 363 HVIKADLEADEYVKNALIDM---YAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRD 419
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108
+A+ +++ M RP TF ++ + LAIE K++HGL +K+
Sbjct: 420 LAEAVNIFHRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKS 468
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+H A AG D+F+ + L+ Y G + R +FD+M R++VSW ++IS G
Sbjct: 56 IHARATVAGGLDDVFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 115
Query: 161 LDAA 164
D A
Sbjct: 116 DDCA 119
>gi|255541290|ref|XP_002511709.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548889|gb|EEF50378.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 450
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + ++ T HA ++ +Q + F WN +I+ + QAL++++LM+ NG D
Sbjct: 41 LHEFARYFFFTRHAYIIGAQEK-EDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVD 99
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
KF+ V+KAC +++G ++HGL K F D+F+Q+ L+ LY+KC +D R++FD
Sbjct: 100 KFSVSLVLKACSRLGLVKEGMQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFD 159
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
KM +R VS+ +MI+G G++D A
Sbjct: 160 KMPMRDSVSYNSMIAGYVKHGNIDLA 185
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LLYNLMICNGFRPDKFTFPFV 85
G D A F + V N M+ +G ++AL + +++ + PD T V
Sbjct: 276 GYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATLLIV 335
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ A IEKG E+H + GFS + + L+D+Y KCG + +F+ ++ ++
Sbjct: 336 LSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSKCGSAENAMLVFEGIKGKTA 395
Query: 146 VSWTTMISGLAASG 159
W MI+GLA G
Sbjct: 396 DHWNAMINGLAIHG 409
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G S ++ L L+D+ S G ++A+LVF I+ WN MI L I G A
Sbjct: 355 IQENGFSLEEKLGVALIDMYSKCGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELA 414
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L M G +PD TF ++ AC
Sbjct: 415 LHFLIEMERVGSKPDDITFIGLLNAC 440
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A VF ++ ++N MI G+ A LY++M N +R + ++ ++
Sbjct: 152 DYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPIN-WR-NLVSWNSLLSGY 209
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+ S + G E+ + RD+ ++++D K G ++ + +FD M R+++SW
Sbjct: 210 MRS---DNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTIISWA 266
Query: 150 TMISGLAASGDLDAA 164
M+ G A G +D A
Sbjct: 267 NMVDGYAKLGYVDIA 281
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R + + ++D Y K G VD RK FD M R VV+ M+SG +G
Sbjct: 259 ERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNG 307
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 87/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL +D+ + L+ + S GK+ A VF ++R V +W MI D +L+A
Sbjct: 122 IYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEA 181
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ +G P++ T V++AC + A+ G+ V G+ + + V++ L+D+
Sbjct: 182 IRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDM 241
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + RK+FD + + V +WT MISGLA G
Sbjct: 242 YAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHG 277
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN--GFRPDKFTFPF 84
G +A L+ + + + F N MIRA + QAL L+ M+C RPDKFT+PF
Sbjct: 42 GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++K+C GK++HGL K+G D +V + L+ +Y CG K+F KMR R
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRD 161
Query: 145 VVSWTTMISGL 155
VVSWT+MI G
Sbjct: 162 VVSWTSMIDGF 172
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A VF I VF W MI L G +A+ L++ M G RPD
Sbjct: 238 LIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPD 297
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ T V+ AC + +G + + K G + ++DL + G +D +
Sbjct: 298 ERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFI 357
Query: 138 DKMRVRS-VVSWTTMISGLAASGDLD 162
KM + VV W T+I GD+D
Sbjct: 358 RKMPIEPDVVLWRTLIWASKVHGDID 383
>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
I Y L N+ + KL+ L + G + A VF ++ R F WN +I G
Sbjct: 349 IPPYLLRNNVGISSKLVRLYASCGYAEVAHEVFDRMSKRESSPFAWNSLISGYAELGQYE 408
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY M +G +PD+FTFP V+KAC +++ G+ +H VKAGF D+ V + L+
Sbjct: 409 DAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKAGFGYDVHVLNALV 468
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCGD+ R +FD + + VSW +M++G G L A
Sbjct: 469 DMYAKCGDIVKARNVFDMIPNKDYVSWNSMLTGYLHHGLLHEA 511
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D ++ L+D+ + G A VF I +WN M+ G +A
Sbjct: 452 LVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNKDYVSWNSMLTGYLHHGLLHEA 511
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ LM+ NG PDK V+ L+ + G+++HG ++ G ++ V + L+ L
Sbjct: 512 LDIFRLMVQNGIDPDKVAISSVLARV---LSFKHGRQLHGWVIRRGMEWELSVANALIVL 568
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G + +FD+M R VSW +IS
Sbjct: 569 YSKRGQLGQACFIFDQMLERDTVSWNAIISA 599
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM- 140
F +++ C AI+ G VH L ++ + S L+ LY CG + ++FD+M
Sbjct: 326 FASLLETCYNLRAIDHGVRVHHLIPPYLLRNNVGISSKLVRLYASCGYAEVAHEVFDRMS 385
Query: 141 -RVRSVVSWTTMISGLAASGDLDAA 164
R S +W ++ISG A G + A
Sbjct: 386 KRESSPFAWNSLISGYAELGQYEDA 410
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G+ + + L+ L S G+ A +F Q+ +WN +I A + D + +
Sbjct: 550 VIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSRDSNGFK- 608
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ M +PD TF V+ C + +E G+ + L K G + M + +++
Sbjct: 609 --YFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKMEHYACMVN 666
Query: 123 LYLKCG 128
LY + G
Sbjct: 667 LYGRAG 672
>gi|255541270|ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 474
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + ++ T HA ++ +Q + F WN +I+ + QAL++++LM+ NG D
Sbjct: 65 LHEFARYFFFTRHAYIIGAQEK-EDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVD 123
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
KF+ V+KAC +++G ++HGL K F D+F+Q+ L+ LY+KC +D R++FD
Sbjct: 124 KFSVSLVLKACSRLGLVKEGMQIHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFD 183
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
KM +R VS+ +MI+G G++D A
Sbjct: 184 KMPMRDSVSYNSMIAGYVKHGNIDLA 209
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LLYNLMICNGFRPDKFTFPFV 85
G D A F + V N M+ +G ++AL + +++ + PD T V
Sbjct: 300 GYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATLLIV 359
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ A IEKG E+H + GFS + + L+D+Y KCG + +F+ ++ ++
Sbjct: 360 LSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSKCGSAENAMLVFEGIKGKTA 419
Query: 146 VSWTTMISGLAASG 159
W MI+GLA G
Sbjct: 420 DHWNAMINGLAIHG 433
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G S ++ L L+D+ S G ++A+LVF I+ WN MI L I G A
Sbjct: 379 IQENGFSLEEKLGVALIDMYSKCGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELA 438
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L M G +PD TF ++ AC
Sbjct: 439 LHFLIEMERVGSKPDDITFIGLLNAC 464
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A VF ++ ++N MI G+ A LY++M N +R + ++ ++
Sbjct: 176 DYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPIN-WR-NLVSWNSLLSGY 233
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+ S + G E+ + RD+ ++++D K G ++ + +FD M R+++SW
Sbjct: 234 MRS---DNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTIISWA 290
Query: 150 TMISGLAASGDLDAA 164
M+ G A G +D A
Sbjct: 291 NMVDGYAKLGYVDIA 305
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R + + ++D Y K G VD RK FD M R VV+ M+SG +G
Sbjct: 283 ERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNG 331
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ V +W MI A G QAL +++ M+ GFRP++FT V+
Sbjct: 196 GDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVL 255
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A+ GK++H +K + D+ + S L+ +Y +CG+V + +FD M R+ +
Sbjct: 256 KACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTI 315
Query: 147 SWTTMISGLAASGDLDAA 164
+WT+MISG A SG + A
Sbjct: 316 TWTSMISGYAQSGHGEKA 333
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 77/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ +A + + +W +I G +++AL + M+ +G +P+ +T+ +
Sbjct: 398 GEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSAL 457
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ G+++HG K ++FV S+L+D+Y++CG VD R +FD M ++V
Sbjct: 458 KACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLV 517
Query: 147 SWTTMISGLAASGDLDAA 164
+W +I+G A +G + A
Sbjct: 518 TWKVIITGFAQNGLCEEA 535
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 21 DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L S Y + D A VF ++ V +W M+ G + + L+ M+ +G +
Sbjct: 87 NLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQG 146
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++K+C + G++VH VK G+S ++ V S + Y +CGDV +F
Sbjct: 147 NSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIVDSAIAHFYAQCGDVASASAIF 205
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
DKM R V+SWTTMI+ G
Sbjct: 206 DKMAYRDVISWTTMITAYVQHG 227
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 2 QKIIRYG-----------LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G ND + L+ + + G+ A VF + + TW M
Sbjct: 261 EKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSM 320
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G +A+LL+ M + T ++ AC + + GKE+H +K
Sbjct: 321 ISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSM 380
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ + STL+ Y KCG+ ++ + M R +SWT +ISG
Sbjct: 381 EENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISG 424
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ VH +AV++ S FV + L+ Y + +V R++FD+M RSVVSWT M++
Sbjct: 67 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMN 121
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L + G D A+LVF + TWN +I G AL L++ M G RPD
Sbjct: 161 LINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPD 220
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F + AC A +E G+++HG A ++ D V + L+DLY KC + RK+FD
Sbjct: 221 RFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFD 280
Query: 139 KMRVRSVVSWTTMISG 154
M R++VSWTTMISG
Sbjct: 281 CMEYRNLVSWTTMISG 296
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G S D L+D+ S + A VF+ + + WN MI + +A
Sbjct: 449 IIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEA 508
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+N ++ +G P++FTF ++ ++ G++ H +KAG D V + L+D+
Sbjct: 509 IKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDM 568
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + GR +F+ V+ W +MI+ A G + A
Sbjct: 569 YAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEA 609
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+I+ L D+ + L+D+ Y K +H A VF + ++N MI + +
Sbjct: 347 HVIKADLEADEYVKNALIDM---YAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRD 403
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A+ ++ M RP TF ++ + LAIE K++HGL +K+G S D++ S
Sbjct: 404 LAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASA 463
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y KC V+ + +F+ + + +V W +MI G A + + A
Sbjct: 464 LIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEA 508
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 78/159 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R D ++ L+DL + A +F + ++ +W MI + + +A+
Sbjct: 249 RSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAIT 308
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M G++PD F ++ +C + AI +G+++H +KA D +V++ L+D+Y
Sbjct: 309 MFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYA 368
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC + R +FD + +S+ MI G + + DL A
Sbjct: 369 KCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEA 407
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D L LL S G+ A +F ++ ++ +W +I T G A+ L+
Sbjct: 48 GRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLF 107
Query: 68 -NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ P++F V++AC S A+ G++VHG+AVK +++V + L++LY K
Sbjct: 108 VAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAK 167
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D +F + VR+ V+W T+I+G A G
Sbjct: 168 LGCMDEAMLVFHALPVRTPVTWNTVITGYAQIG 200
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G+ ND + L+D+ + G ++F V WN MI G + +A
Sbjct: 550 IIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEA 609
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
L ++ LM P+ TF V+ AC + + +G H ++K+ + + ++ ++++
Sbjct: 610 LQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLN-HFNSMKSNYDIEPGIEHYASVV 668
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+L+ + G + ++ ++M ++ + W +++S G+ +
Sbjct: 669 NLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAE 710
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+H A AG D+F+ + L+ Y G + R +FD+M R++VSW ++IS G
Sbjct: 40 IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99
Query: 161 LDAA 164
D A
Sbjct: 100 DDCA 103
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+++ G+ N L+V L FY G+ AL F + V +W +I A + G
Sbjct: 209 NMVKVGVGN--LIVES--SLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGH 264
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A+ ++ M+ +GF P++FT ++KAC AI G++VH L VK D+FV ++
Sbjct: 265 GNKAIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTS 324
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LMD+Y KCG++ RK+FD M R+ V+WT++I+ A G
Sbjct: 325 LMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREG 364
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + + + L+ L G++ A V Q+ V +W MI + G +
Sbjct: 410 QIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESE 469
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL MI G P+ FT+ +KAC S ++ G+ +H +A K ++FV S L+
Sbjct: 470 ALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIH 529
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V ++FD M +++VSW MI G A +G
Sbjct: 530 MYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNG 566
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 2 QKIIRYGLSNDQLLVRK-----------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM 50
+K IR+G L+V++ L+D+ + G+ VF + + TW +
Sbjct: 297 EKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSI 356
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I A +G +A+ L+ +M + T +++AC + A+ GKE+H +K
Sbjct: 357 IAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSI 416
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++++ STL+ LY KCG+ + ++ R VVSWT MISG ++ G A
Sbjct: 417 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 470
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 11 NDQLLV--RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+DQ++ L+ C G +A VF + + TW MI G +A L+
Sbjct: 113 DDQVIYFGNNLISSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDGYLKFGLEDEAFSLFE 172
Query: 69 LMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ +G R ++ F ++ C E G++VHG VK G ++ V+S+L+ Y +C
Sbjct: 173 DYVKHGIRFTNERMFVCLLNLCSRRSEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC 231
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G++ + FD M + V+SWT +IS + G + A
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGNKA 268
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
K +H +A+K + ++ + L+ ++ GD+ RK+FD M R+ V+WT MI G
Sbjct: 102 KRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDGYLKF 161
Query: 159 GDLDAA 164
G D A
Sbjct: 162 GLEDEA 167
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+F N +IR + G +A+LLY M+ G P+ +TFPFV+ C A +G +VHG
Sbjct: 96 LFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHG 155
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
VK G D+F+Q+ L+ Y +CG +D G K+F+ M R+VVSWT++I G A
Sbjct: 156 SVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYA 208
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 83/157 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL ++++V L+D+ G D A +F + ++ +N ++ G + +AL +
Sbjct: 262 GLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAIL 321
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M+ G RPD+ T I A + + GK HG ++ G + + ++D+Y+KC
Sbjct: 322 DEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKC 381
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + ++FD M ++VVSW ++ +G +GD+++A
Sbjct: 382 GKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESA 418
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF+QI + WN MI L A+ L+ M G + D+ T +
Sbjct: 413 GDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIA 472
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A E K VH K G DM + + L+D++ +CGD ++F+KM R V
Sbjct: 473 SACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVS 532
Query: 147 SWTTMISGLAASGDLDAA 164
+WT I +A G+ + A
Sbjct: 533 AWTAAIGTMAMEGNGEGA 550
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+ + G DH VF + +V +W +I +A
Sbjct: 157 VVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEA 216
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G RP T VI AC ++ G+ V + G + + + L+D+
Sbjct: 217 VSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDM 276
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KCG +D +++FD+ R++V + T++S A G
Sbjct: 277 YMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQG 312
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D L L+D+ + G A+ VF+++ V W I + ++G+ A
Sbjct: 491 IEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGA 550
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+N M+ G +PD F V+ AC +E+G + L G S + ++DL
Sbjct: 551 TGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDL 610
Query: 124 YLKCGDVDGGRKMFDKMRVRSV----VSWTTMISGLAASGDLDAA 164
+ G + R+ FD ++ + V W ++++ +++ A
Sbjct: 611 LGRAGLL---REAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMA 652
>gi|255570455|ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534490|gb|EEF36190.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL DQ+ V +L C+++ G D A +FS+ R W MI T +G AL+
Sbjct: 253 GLKPDQVTVSNVL--CAYFQSGYIDGATKLFSETREKDKVCWTTMIVGYTQNGKEENALM 310
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+N M+ N RPD +T V+ +C ++ G+ +HG+A+ G D+ V ++L+D+Y
Sbjct: 311 LFNEMLEN-VRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMGIDDDLLVSTSLVDMYC 369
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
KCG +F M RSVVSW M+ G A +G DL+A
Sbjct: 370 KCGVTSDAWVVFSMMPARSVVSWNAMLGGYARNGQDLEA 408
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 32/184 (17%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM-------------------- 50
+D L +LL L + GK HA +F ++ +F+WN M
Sbjct: 57 SDSFLQNRLLHLYAKLGKISHARYLFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDM 116
Query: 51 -----------IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
I +G + +A+ + M GF+P ++T V+ AC L + KGK
Sbjct: 117 PSRDSVSYNTVITGFAKNGRAGKAVEAFVRMQTEGFKPTEYTHVSVLNACTQLLDLRKGK 176
Query: 100 EVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
++HG + + ++F+ + L D+Y KC ++D R +FD++ +++VSW +MISG +
Sbjct: 177 QIHGRILTGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYLKN 236
Query: 159 GDLD 162
G +
Sbjct: 237 GQFE 240
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ +D L+ L+D+ G T A +VFS + V +WN M+ +G L+AL LY
Sbjct: 353 GIDDDLLVSTSLVDMYCKCGVTSDAWVVFSMMPARSVVSWNAMLGGYARNGQDLEALALY 412
Query: 68 NLMICNGFRPDKFTFPFVIKAC 89
M RPD TF V+ AC
Sbjct: 413 EKMFQENIRPDNITFVGVLSAC 434
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHAL---LVFSQIRCPHVFTWNLMIRALTIDGS 59
+I+ GL ND +LL + + + + L+F WN +IR + S
Sbjct: 52 QILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDS 111
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A+ L+ M G RP+ TFPF++KAC +++GK+ H +A+K G D++V++T
Sbjct: 112 PQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNT 171
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y C + G RK+FD+M R++VSW +I+ + D A
Sbjct: 172 LIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEA 216
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 22 LCSFYG---KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FYG + A VF ++ + +WN +I A + +A+ + M +GF PD
Sbjct: 172 LIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPD 231
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T ++ AC + G+ VH V G ++ + + +D+Y K GDV R +F+
Sbjct: 232 ETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFN 291
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ +SV +W+ MI GLA G + A
Sbjct: 292 CLKQKSVWTWSAMILGLAQHGFANEA 317
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 4/159 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G+ + L +D+ + G A VF+ ++ V+TW+ MI L G + +
Sbjct: 257 QVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANE 316
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLM 121
A+ L+ M+ + P+ TF V+ AC + ++K L + G M +++
Sbjct: 317 AIELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMV 376
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASG 159
D+ + G V ++ M V + W T++S A SG
Sbjct: 377 DVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLS--ACSG 413
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQ-IRCPHVFTWNLMIRALTIDGSSLQALLLYN--L 69
++ K + + S +G H++L+F+ + P++F +N +++A + + + +N L
Sbjct: 58 NIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQL 117
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
++ N PD++TF V+KAC + +G++VH K G ++FV+++L+DLY K G
Sbjct: 118 VLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGC 177
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K+FD+M VR VVSW T+ISG SG +D A
Sbjct: 178 NCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G + A +F + +V +WN MI + A+ L+ M G P+ T V
Sbjct: 238 GNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSV 297
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A++ GK +H + +F+ + L D+Y KCG V + +F +M R V
Sbjct: 298 LSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDV 357
Query: 146 VSWTTMISGLAASGDLDAA 164
+SW+ +I GLA G + A
Sbjct: 358 ISWSIIIMGLAMYGYANEA 376
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ V +W+++I L + G + +A + MI +G P+ +F ++ AC +
Sbjct: 348 VFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGL 407
Query: 95 IEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMI 152
++KG E + + G + + ++DL + G +D + + M ++ +V+ W ++
Sbjct: 408 VDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALL 467
Query: 153 SG 154
G
Sbjct: 468 GG 469
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+++ ST++ Y + G+++ R++F+ M +R+VVSW MI+G A +
Sbjct: 221 EKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQN 268
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 32/183 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
II+ GL++ + ++L C S G ++A L+F+ I P+++ WN +IR + +
Sbjct: 48 IIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHL 107
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M+C+ P + T+P V KA A G ++HG VK G +D F+Q+T++
Sbjct: 108 AISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIY 167
Query: 123 LY-------------------------------LKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+Y KCG+VD R++FD M R+ V+W +M
Sbjct: 168 MYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSM 227
Query: 152 ISG 154
ISG
Sbjct: 228 ISG 230
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D + +F + TWN MI + ++AL L+ M P +FT ++
Sbjct: 204 GEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLL 263
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++ G+ VH + F ++ V + ++D+Y KCG + ++F+ R +
Sbjct: 264 SACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLS 323
Query: 147 SWTTMISGLAASG 159
W ++I GLA +G
Sbjct: 324 CWNSIIIGLALNG 336
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++R L D +L+ C S +A+ V SQI+ P++F +N +IR + +
Sbjct: 40 MLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPE 99
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ Y + G PD T PF++KAC G + HG A+K GF +D +VQ++L+
Sbjct: 100 NSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLV 159
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y GD++ R +F +M VVSWT MI+G GD +A
Sbjct: 160 HMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSA 202
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 69/138 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ ++ TW+ MI + +A+ + + G ++ VI
Sbjct: 197 GDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVI 256
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+C A+ G++ H ++ S ++ + + ++D+Y +CG+V+ +F+++ + V+
Sbjct: 257 SSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVL 316
Query: 147 SWTTMISGLAASGDLDAA 164
WT +I+GLA G + A
Sbjct: 317 CWTALIAGLAMHGYAEKA 334
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++R LS + +L ++D+ + G + A++VF Q+ V W +I L + G +
Sbjct: 273 EYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAE 332
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTL 120
+AL ++ M GF P TF V+ AC + +E+G E+ + G + +
Sbjct: 333 KALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCM 392
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRS 144
+DL + G + K KM V+
Sbjct: 393 VDLLGRAGKLRKAEKFVLKMPVKP 416
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G ++ + LLDL + YG D A LVF + + +WN +I + +AL
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ +GFRP F++ + AC ++ +E+GK VH +K+G F +TL+D+Y
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + RK+FD++ R VVSW ++++ A G
Sbjct: 308 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG 342
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q I R+ D ++ LL++ + G + A VF ++ TW +I +
Sbjct: 87 LQSIFRH----DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRP 142
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
ALL +N M+ G+ P++FT VIKA A G ++HG VK GF ++ V S L
Sbjct: 143 CDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSAL 202
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+DLY + G +D + +FD + R+ VSW +I+G A + A
Sbjct: 203 LDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D+ + ++K C + +G+ VH +++ F D+ + +TL+++Y KCG ++ RK+F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 138 DKMRVRSVVSWTTMISGLA 156
+KM R V+WTT+ISG +
Sbjct: 119 EKMPQRDFVTWTTLISGYS 137
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ + G A +F ++ V +WN ++ A G +A+ + M G RP+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ +F V+ AC S +++G + L K G + + T++DL + GD++ + +
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422
Query: 139 KMRVRSVVS-WTTMISG 154
+M + + W +++
Sbjct: 423 EMPIEPTAAIWKALLNA 439
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ L + +LD+ + G+ D A VF++I WN MI + + +G +A
Sbjct: 387 IIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEA 446
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G R D + + AC A+ GKE+HGL +K D++ +S+L+D+
Sbjct: 447 INLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDM 506
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
Y KCG+++ R++FD+M+ ++ VSW ++IS GDL
Sbjct: 507 YAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDL 544
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN MIR T+ G ALL Y M+ G PDK+TFP+V+KAC +++ GK VH
Sbjct: 25 AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETV 84
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
G D+FV S+L+ LY + G + + +FD + + V W M++G +GD
Sbjct: 85 NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGD 139
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+ L + G A +F I WN+M+ +G S A+ ++
Sbjct: 88 GLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIF 147
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M + +P+ TF V+ C + ++ G ++HG+AV G D V +TL+ +Y KC
Sbjct: 148 LEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKC 207
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ RK+FD + +VSW +ISG +G + A
Sbjct: 208 QCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEA 244
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + LL + S A +F + + +WN +I +G +A L+
Sbjct: 189 GLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLF 248
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
MI G +PD TF + L+++ KE+HG ++ D+F++S L+D+Y KC
Sbjct: 249 RGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKC 308
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
DV+ +K + V TTMISG +G
Sbjct: 309 RDVEMAQKNLCQSSSFDTVVCTTMISGYVLNG 340
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR+ + D L L+D+ + A Q MI ++G + +A
Sbjct: 286 IIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEA 345
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + ++ +P TF + A A+ GKE+HG +K V S ++D+
Sbjct: 346 LEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDM 405
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D ++F+++ + + W +MI+ + +G
Sbjct: 406 YAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG 441
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ L +D L+D+ + G + + VF +++ + +WN +I A G +
Sbjct: 488 MIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKEC 547
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M+ NG +PD TF +I AC + +++G + H + + G M + + D
Sbjct: 548 LALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVAD 607
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++ + G + + + M W T++ G+++ A
Sbjct: 608 MFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELA 650
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A +F ++ V +W MI A G QAL +++ M+ GFRP++FT V+
Sbjct: 229 GDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVL 288
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A+ GK++H +K + D+ + S L+ +Y +CG+V + +FD M R+ +
Sbjct: 289 KACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTI 348
Query: 147 SWTTMISGLAASGDLDAA 164
+WT+MISG A SG + A
Sbjct: 349 TWTSMISGYAQSGHGEKA 366
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 77/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ +A + + +W +I G +++AL + M+ +G +P+ +T+ +
Sbjct: 431 GEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSAL 490
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ G+++HG K ++FV S+L+D+Y++CG VD R +FD M ++V
Sbjct: 491 KACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLV 550
Query: 147 SWTTMISGLAASGDLDAA 164
+W +I+G A +G + A
Sbjct: 551 TWKVIITGFAQNGLCEEA 568
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 21 DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L S Y + D A VF ++ V +W M+ G + + L+ M+ +G +
Sbjct: 120 NLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQG 179
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++K+C + G++VH VK G+S ++ V S + Y +CGDV +F
Sbjct: 180 NSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWS-NVIVDSAIAHFYAQCGDVASASAIF 238
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
DKM R V+SWTTMI+ G
Sbjct: 239 DKMAYRDVISWTTMITAYVQHG 260
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 2 QKIIRYG-----------LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G ND + L+ + + G+ A VF + + TW M
Sbjct: 294 EKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSM 353
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G +A+LL+ M + T ++ AC + + GKE+H +K
Sbjct: 354 ISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSM 413
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ + STL+ Y KCG+ ++ + M R +SWT +ISG
Sbjct: 414 EENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISG 457
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ VH +AV++ S FV + L+ Y + +V R++FD+M RSVVSWT M++
Sbjct: 100 RRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMN 154
>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
Length = 781
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A+ + +R P F N+MIR G AL Y M+ +G RPD+FTFP V+
Sbjct: 55 GRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVV 114
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
K C +++G+ HG+ +K G D++ ++L+ Y K G V+ ++FD M VR +V
Sbjct: 115 KCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIV 174
Query: 147 SWTTMISGLAASG 159
+W M+ G ++G
Sbjct: 175 TWNIMVDGYVSNG 187
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL +D L+ + G + A VF + + TWN+M+ +G A
Sbjct: 133 VIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLA 192
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L + M + D + AC + +GKE+HG ++ G +D+ V ++L+D
Sbjct: 193 LACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLD 252
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG+V R +F M +R+VV+W MI G A + D A
Sbjct: 253 MYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEA 294
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +L LL++ GK + + +F +I + +WN MI A +A
Sbjct: 336 VVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEA 395
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ ++ PD FT V+ A + ++ +++H + G++ + + + ++ +
Sbjct: 396 ITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHM 455
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y + GDV R++FDKM + V+SW TMI G A G
Sbjct: 456 YARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHG 491
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+GL D + LLD+ G+ +A VF+ + V TWN MI ++ +A
Sbjct: 235 VIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEA 294
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M G + + T ++ AC + + G+ VHG V+ F + +++ L+++
Sbjct: 295 FDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEM 354
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G V+ K+F K+ +++VSW MI+
Sbjct: 355 YGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G + + L++ +L + + G + +F ++ V +WN MI I G A
Sbjct: 437 IIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTA 496
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
L +++ M NG +P++ TF V+ AC S +++G L ++ G + + D
Sbjct: 497 LEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTD 556
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + GD+ + + M + W ++++ D+D A
Sbjct: 557 LLGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIA 599
>gi|224084768|ref|XP_002307403.1| predicted protein [Populus trichocarpa]
gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 78/133 (58%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF ++ V +W MI A + G +A ++ M+ GF P+ FT ++
Sbjct: 89 GDLKSAFCVFDRMVERDVVSWTTMITACSQQGRCGEAFGMFTQMLNGGFLPNGFTASGIL 148
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ GK++HG VK + D+FV ++L+D+Y KCG+V K+F+ MR R+ V
Sbjct: 149 KACGEEKALKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTV 208
Query: 147 SWTTMISGLAASG 159
+WT++I+G A G
Sbjct: 209 TWTSIIAGYARKG 221
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ +++ L L+ G++ A V Q+ V +W +I G +
Sbjct: 267 QIIKNCSQSNEYLGSTLVWFYCKCGESRTASKVLQQMPFRDVVSWTAIISGHACLGHESE 326
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL M+ G P+ FT+ +KAC + +GK +H A K S ++FV S L+
Sbjct: 327 ALEFLKEMMEEGVEPNSFTYSSALKACANLETVLQGKLIHSSANKTPASSNVFVGSALIH 386
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG V ++FD M R++V+W MI G +G
Sbjct: 387 MYARCGYVSEAIQVFDSMPERNLVTWRAMIMGYVRNG 423
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+V +W MI G +AL ++ I +G P+ TF V+ C L E G++VH
Sbjct: 5 NVVSWTAMINGYFKFGLDDEALSYFSQAIKDGVVPNSKTFVCVLNLCSRRLDFELGRQVH 64
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
VK + R++ V S ++ Y++CGD+ +FD+M R VVSWTTMI+ + G
Sbjct: 65 ARVVKGNW-RNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSWTTMITACSQQGRCG 123
Query: 163 AA 164
A
Sbjct: 124 EA 125
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ +D + L+D+ + G+ + VF+ +R + TW +I G +A
Sbjct: 167 IVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTWTSIIAGYARKGLGEEA 226
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ LM+ + T +++AC A+ G+EVH +K + ++ STL+
Sbjct: 227 ICLFRLMMRRRVVSNNLTIVSMLRACGLIGALLAGREVHAQIIKNCSQSNEYLGSTLVWF 286
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+ K+ +M R VVSWT +ISG A G A
Sbjct: 287 YCKCGESRTASKVLQQMPFRDVVSWTAIISGHACLGHESEA 327
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G ++ + LLDL + YG D A LVF + + +WN +I + +AL
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ +GFRP F++ + AC ++ +E+GK VH +K+G F +TL+D+Y
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + RK+FD++ R VVSW ++++ A G
Sbjct: 308 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG 342
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q I R+ D ++ LL++ + G + A VF ++ TW +I +
Sbjct: 87 LQSIFRH----DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRP 142
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
ALL +N M+ G+ P++FT VIKA A G ++HG VK GF ++ V S L
Sbjct: 143 CDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSAL 202
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+DLY + G +D + +FD + R+ VSW +I+G A + A
Sbjct: 203 LDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D+ + ++K C + +G+ VH +++ F D+ + +TL+++Y KCG ++ RK+F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 138 DKMRVRSVVSWTTMISGLA 156
+KM R V+WTT+ISG +
Sbjct: 119 EKMPQRDFVTWTTLISGYS 137
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ + G A +F ++ V +WN ++ A G +A+ + M G RP+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ +F V+ AC S +++G + L K G + + T++DL + GD++ + +
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422
Query: 139 KMRVRSVVS-WTTMISG 154
+M + + W +++
Sbjct: 423 EMPIEPTAAIWKALLNA 439
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRAL-TIDGSSLQALLLYNLMICNGFRP 77
L S Y K D AL +F + +V TW ++ AL + DG +AL M +G P
Sbjct: 110 LASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAP 169
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ +TF V+ AC + VH VKAG D+FV+S+L+D Y+K GD+DGGR++F
Sbjct: 170 NAYTFSSVLGACTTPGML---TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVF 226
Query: 138 DKMRVRSVVSWTTMISGLAASGD 160
D+M R +V W ++I+G A SGD
Sbjct: 227 DEMVTRDLVVWNSIIAGFAQSGD 249
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +D + L+D G D VF ++ + WN +I G + A+
Sbjct: 195 VKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAI 254
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M GF ++ T V++AC + +E G++VH +K + RD+ + + L+D+Y
Sbjct: 255 ELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMY 312
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ +F +M R V+SW+TM+SGLA +G
Sbjct: 313 CKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNG 347
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGK------EVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
R D + ++K C+ + G+ E HG G + +FV ++L +Y K G
Sbjct: 61 RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDG-AGGLFVSNSLASMYAKFGL 119
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+D +MFD M VR+VV+WTT+++ LA++
Sbjct: 120 LDDALRMFDGMPVRNVVTWTTVVAALASA 148
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++Y D +L LLD+ G + A +F ++ V +W+ M+ L +G S++A
Sbjct: 295 VLKY--DRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEA 352
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L +++LM G P+ T V+ AC + +E G + G + + ++D
Sbjct: 353 LRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVD 412
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMI 152
L + G +D + M + V W T++
Sbjct: 413 LLGRAGKLDEAVEFIHGMSLEPDSVIWRTLL 443
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD----HALLVFSQIRCPHVFTWNLMIRALTIDG 58
+I+ GL D L+ +L+ CS H+LL S P WN +IR
Sbjct: 42 QILVSGLQQDTNLLTELIRFCSLSPSKHLSYAHSLLYNSLDSLP---PWNFLIRGYASGD 98
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ A+ +++ M G P+ FTFPFV+KAC LA+E+GK+VH K G D++V +
Sbjct: 99 APKNAIRVFHRMRKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFKFGLDCDVYVNN 158
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
L+ LY C + K+FD+M VRS+VSW ++I+
Sbjct: 159 NLVHLYGSCKRIWDACKVFDEMPVRSIVSWNSVITA 194
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++GL D + L+ L + A VF ++ + +WN +I A + A
Sbjct: 145 IFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSIVSWNSVITACVQNLWLGDA 204
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M GF P++ T ++ C + G+ +H ++ G + + + + L+D+
Sbjct: 205 IWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTLNCQLGTALVDM 264
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K GD+ + +FD+M ++V +W+ MI GLA G
Sbjct: 265 YAKSGDLGYAKLVFDRMEKKNVWTWSAMILGLAQHG 300
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I G++ + L L+D+ + G +A LVF ++ +V+TW+ MI L G +
Sbjct: 245 QVIERGMTLNCQLGTALVDMYAKSGDLGYAKLVFDRMEKKNVWTWSAMILGLAQHGFGKE 304
Query: 63 ALLLY-----NLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFV 116
L L+ ++ IC P+ TF V+ AC + +++G + + + + G +
Sbjct: 305 GLELFLKMKESVSIC----PNYVTFLGVLCACSHAGLVDEGFRYFYEMEHRHGIRPMVIH 360
Query: 117 QSTLMDLYLKCGDVDGGRK-MFDKMRVRSVVSWTTMISG 154
++D+ + G+++ + D + W T++S
Sbjct: 361 YGAMVDILGRAGNLEEAYNFLMDVPFQPDPILWRTLLSA 399
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL D LV +L+ S D +A + P WN++IR + AL
Sbjct: 691 GLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPVPLPWNILIRGYADSNTPKDALF 750
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+Y M G RP+ TFPF++KAC A A ++GK+VH +K G D++V + L++ Y
Sbjct: 751 VYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYG 810
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
C + K+FD+M R+VVSW +I+ S L A
Sbjct: 811 SCKKILDACKVFDEMPERTVVSWNAVITSCVESLKLGEA 849
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYG---KTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+YGL D + L++ FYG K A VF ++ V +WN +I + ++
Sbjct: 789 EVIKYGLDCDVYVNNNLVN---FYGSCKKILDACKVFDEMPERTVVSWNAVITS-CVESL 844
Query: 60 SLQALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
L + Y L + + GF PD T ++ C + G+ +H ++ G + + +
Sbjct: 845 KLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVLNYQLGT 904
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y K G V + +FD+M+ ++V +W+ MI GLA G
Sbjct: 905 ALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHG 945
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I GL + L L+D+ + G +A LVF +++ +V+TW+ MI L G + +
Sbjct: 890 QVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKE 949
Query: 63 ALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTL 120
L L+ ++M + P+ TF V+ AC + + G + H + G M +
Sbjct: 950 GLELFLDMMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAM 1009
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMIS 153
+D+ + G + KM + + W T++S
Sbjct: 1010 VDILGRAGLLKEAYNFITKMPFQPDPIVWRTLLS 1043
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQA 63
I++ L D + L+ + GK DHA +F + V TWN +I + G S A
Sbjct: 451 IKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTA 510
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LY+ M+ G P+ T VI AC +A+E+G+++H + G+ D+ + + L+D+
Sbjct: 511 VSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDM 570
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R++FD M VV+W MISG G+ A
Sbjct: 571 YAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQA 611
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GLS +V KL+ S G+ A L FS P F WN +IR + AL
Sbjct: 36 VTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCASDFVAAL 95
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQSTL 120
+ M+ + RP FT P A A+ G VH V+ G + V S+L
Sbjct: 96 NAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGSVAVPSSL 155
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+ +Y +CG V K+F++MR R VV+WT ++SG +G+
Sbjct: 156 VYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGE 195
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ + +++ L + S T+ A +F ++ V +W +I G +A+
Sbjct: 246 VKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAM 305
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ +G +PD ++ S + GK H + +K F ++ V + L+ +Y
Sbjct: 306 ELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMY 365
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K VD ++F + R SW MI G +G
Sbjct: 366 GKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAG 400
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI---CNGF 75
L S YGK D+A VF + +WNLMI G ++ L LY M F
Sbjct: 361 LISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEF 420
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
D + I +C + + G+ H ++K D V + L+ +Y +CG D K
Sbjct: 421 LCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACK 480
Query: 136 MFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+F +++ VV+W T+IS A G + A
Sbjct: 481 IFGLAKLKGDVVTWNTLISSYAHLGHSNTA 510
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)
Query: 5 IRYGL----SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS- 59
+RYGL + L+ + + G A+ +F ++R V W ++ +G
Sbjct: 137 VRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGEC 196
Query: 60 --SLQALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
L+ L+ + +G RP+ T ++AC + G+ +HG AVK G V
Sbjct: 197 GDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMV 256
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
S L +Y KC + +F ++ + VVSWT++I
Sbjct: 257 ISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLI 292
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 2 QKIIRY----GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+KI Y G D + L+D+ + G+ A +F + V WN+MI +
Sbjct: 546 EKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMH 605
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G + QAL L+ M +P+ TF ++ AC S +E+G+++ K ++
Sbjct: 606 GEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHY 665
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ ++DL K G + M M V W T++S D +
Sbjct: 666 ACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFE 711
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 24 SFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF 80
SFY G + A F Q+R V W +I A + G +A +++ M+ GF P++F
Sbjct: 109 SFYAQCGDLESAFCAFFQVREKDVVCWTSVISACSQQGRGEEAFRMFSQMLGEGFLPNEF 168
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
T ++KAC A++ G+++H VK + D+F+ ++L+D+Y KCG++ +++FD M
Sbjct: 169 TVCAILKACGEKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGM 228
Query: 141 RVRSVVSWTTMISGLAASG 159
R R+ V+WT++I+G A G
Sbjct: 229 RKRNTVTWTSIIAGYARKG 247
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 81/157 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G+ ++ L L+ G+ + A V Q+ +V +W MI G +
Sbjct: 293 QIIKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLGYEFE 352
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL M+ G P++FT+ +KAC ++ +GK +H A K S +++V S L+
Sbjct: 353 ALEFLKEMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSALIY 412
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG + ++FD M R+++SW TMI A +G
Sbjct: 413 MYSKCGYLSDAIQVFDSMPERNLISWKTMILSYARNG 449
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ +D + L+D+ + G+ + VF +R + TW +I G +A
Sbjct: 193 IVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVTWTSIIAGYARKGLGEEA 252
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ +M + T V++AC + A G+EVH +K+G ++++ STL+
Sbjct: 253 IRLFRVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGSTLVWF 312
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+ + K+ +M R+VVSWT MISG G
Sbjct: 313 YCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLG 348
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A VF Q+ V +W MI G +AL L++ +I NG + TF ++
Sbjct: 15 GELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEALRLFSELIENGVTANNRTFVCIL 74
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C L E G+++H VK + R++ V S ++ Y +CGD++ F ++R + VV
Sbjct: 75 NVCSKRLDFELGRQIHACVVKGNW-RNLIVDSAIVSFYAQCGDLESAFCAFFQVREKDVV 133
Query: 147 SWTTMISGLAASGDLDAA 164
WT++IS + G + A
Sbjct: 134 CWTSVISACSQQGRGEEA 151
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
M+V + L+ +Y + G++ RK+FD+M R VVSWT MI+G + G D A
Sbjct: 1 MYVDNNLISVYARLGELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEA 51
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVF-SQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I YG S + L+++ S G+ A+LVF +VF +N +I +G + +
Sbjct: 37 MITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASK 96
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
Y M G PDK+TFP V++ C + ++K +HG +K G D+FV S L++
Sbjct: 97 GFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKK---IHGCLLKMGLELDVFVGSALVN 153
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
YLK G ++ +K+F ++ +R VV W MI+G A G LD A
Sbjct: 154 TYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEA 195
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ G + + L+D+ YGK H AL++F I +F+WN +I G
Sbjct: 237 VMKMGYDSGVSVSNALIDM---YGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDH 293
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD------- 113
L L++ M+ +G PD T V+ AC A+ G+E+HG + G +D
Sbjct: 294 DGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVD 353
Query: 114 -MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ V + +MD+Y KCG ++ K+FD M + V SW MI G G
Sbjct: 354 NLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHG 400
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L++ G + A VF ++ V WN MI G +A
Sbjct: 136 LLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEA 195
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M G P +FT ++ + ++ GK VHG+ +K G+ + V + L+D+
Sbjct: 196 LEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDM 255
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC + +F+ + + + SW ++IS GD D
Sbjct: 256 YGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGT 296
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 12 DQLLVRK-LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
D LLV ++D+ + G ++AL +F + V +WN+MI + G +L+AL +++ M
Sbjct: 353 DNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQM 412
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
F+P++ T V+ AC + + G+ + + G + + ++D+ + G
Sbjct: 413 CEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGH 472
Query: 130 VDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
++ ++ KM +++ V W ++ G+ + A
Sbjct: 473 LEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELA 508
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF-DKMRVRS 144
+++C + KGK++H L + GFS ++L+++Y KCG + +F D R+
Sbjct: 18 LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77
Query: 145 VVSWTTMISGLAASG 159
V ++ +ISG ++G
Sbjct: 78 VFAYNAIISGFVSNG 92
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 26 YGKTDHALLVF--SQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
+G ++LL+F S F WN +IRA +I G YN M+ G +PD+ T+P
Sbjct: 83 FGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGV-FDGFGTYNTMVRAGVKPDECTYP 141
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
FV+K C + + KG+EVHG+A K GF D+FV +TL+ Y CG K+FD+M R
Sbjct: 142 FVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPER 201
Query: 144 SVVSWTTMI 152
VSW T+I
Sbjct: 202 DKVSWNTVI 210
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR G S D + L D+ S G + A VF+ I ++N++I + SL+
Sbjct: 468 RIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLE 526
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L L++ M G RPD +F V+ AC I +GKE+HGL V+ F +FV ++L+D
Sbjct: 527 SLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLD 586
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY +CG +D K+F ++ + V SW TMI G G+LD A
Sbjct: 587 LYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTA 628
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G + VF +I +V +WN +I + + G + AL ++ LMI G RP+
Sbjct: 282 LVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPN 341
Query: 79 KFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
T ++ + L + K G EVHG ++K D+F+ ++L+D+Y K G +F
Sbjct: 342 SVTISSMLPV-LGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIF 400
Query: 138 DKMRVRSVVSWTTMISGLA 156
+KM VR++VSW MI+ A
Sbjct: 401 NKMGVRNIVSWNAMIANFA 419
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ + +D + L+D+ + G + A +F+++ ++ +WN MI + +A+
Sbjct: 369 LKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAV 428
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M G P+ TF V+ AC + GKE+H ++ G S D+FV + L D+Y
Sbjct: 429 ELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMY 488
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG ++ + +F+ + VR VS+ +I G + + D
Sbjct: 489 SKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTND 523
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 22 LCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC--NGFR 76
L +FYG A+ VF ++ +WN +I ++ G +AL + +M+ G +
Sbjct: 178 LLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQ 237
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRK 135
PD T V+ C + + VH A+K G + V + L+D+Y KCG +K
Sbjct: 238 PDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKK 297
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD++ R+V+SW +I+ + G
Sbjct: 298 VFDEIDERNVISWNAIITSFSFRG 321
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 5 IRYGLSNDQLLVRKL-----------LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRA 53
IR G LLVRKL LDL + G+ D A VF I+ V +WN MI
Sbjct: 559 IRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILG 618
Query: 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
+ G A+ L+ M +G D +F V+ AC IEKG++
Sbjct: 619 YGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRK 665
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G + +V L+ + G A +F + V TW M+ G +A
Sbjct: 324 IIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEA 383
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G +PDK TF + +C + +++GK +H V AG+S D+++QS L+ +
Sbjct: 384 IDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSM 443
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D R +F++M R+VV+WT MI+G A G
Sbjct: 444 YAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHG 479
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ ++ L LL + + G A VF IR ++ +W MI A +L+A
Sbjct: 122 ILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEA 181
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
Y M G +PDK TF ++ A ++ G++VH KAG + V ++L+ +
Sbjct: 182 YKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGM 241
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+ + +FDK+ ++VV+WT +I+G A G +D A
Sbjct: 242 YAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVA 282
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 86/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + GL + + L+ + + G A ++F ++ +V TW L+I G
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L M P+K T+ +++ C LA+E GK+VH +++G+ R+++V + L+
Sbjct: 282 ALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALIT 341
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + RK+F + R VV+WT M++G A G D A
Sbjct: 342 MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEA 383
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+ L G +AL + N MI G R F +++ C ++E+G+EVH +K+G
Sbjct: 68 VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG-LAASGDLDA 163
+ ++++TL+ +Y KCG + R++FD +R R++VSWT MI +A + +L+A
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEA 181
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 2/163 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+++ G S D L L+ + + G D A LVF+Q+ +V W MI G
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCR 482
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTL 120
+AL + M G +PDK TF V+ AC +E+G K + + G + S
Sbjct: 483 EALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCF 542
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+DL + G ++ + M + S W ++S D++
Sbjct: 543 VDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVE 585
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 16 VRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-C 72
+R+LL C +F G+ +A VF I P +F N M+R G+ A +Y M
Sbjct: 34 LRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEA 93
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
+ RPD FTF ++++AC G++VHG VK GF +D +V++ L++++ KCGD+
Sbjct: 94 SRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRV 153
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ D+ VV+W+ +I+G AA GD+ AA
Sbjct: 154 ASVLLDEAGEGDVVAWSAVIAGHAARGDMAAA 185
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF---------------YGKTDHALLVFSQIRCPHVFTWN 48
I + D RK+ D C+ +G+ ++A +F + V +WN
Sbjct: 173 IAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWN 232
Query: 49 LMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVK 107
+I G AL +++ M G+ PD+ T ++ C + ++ G+ +H L ++
Sbjct: 233 TIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLE 292
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+ V + L+ +Y KCGD+ + F+ M+ V +W ++I GLA G +
Sbjct: 293 RRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAE 347
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 80/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G ++V KL+ + + A + H WNL+I + +G +A
Sbjct: 119 IISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEA 178
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M G RPDKFT+P V+KAC L I GK++H + ++FV ++L+ +
Sbjct: 179 LSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSM 238
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G++ R +F+ M R VSW TMISG A+ G
Sbjct: 239 YAKTGELSTARCLFENMLERDDVSWNTMISGYASKG 274
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA +F R ++ TWN M+ T S +A L+ M+ +G P+ T ++ C
Sbjct: 383 HAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCA 442
Query: 91 ASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ GKE H + +AGF + + ++L+D+Y + G V +++FD + R V++T
Sbjct: 443 RVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYT 502
Query: 150 TMISGLAASGD 160
++I+G G+
Sbjct: 503 SLIAGYGIQGE 513
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 27 GKTDHALLVFSQIRCP----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G A +F ++R ++ TWN + G+ +AL L + M G D
Sbjct: 274 GMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVAT 333
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
+ AC AI+ G+E+HG A+++ + V++ L+ +Y +C + +F R
Sbjct: 334 IIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRT 393
Query: 143 RSVVSWTTMISG 154
+++++W +M+SG
Sbjct: 394 KNIITWNSMLSG 405
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + LL L+D+ + GK A +F I T+ +I I G +AL
Sbjct: 460 RAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALK 519
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLY 124
L++ M +PD T V+ AC S + +G ++ L A G + + ++DL+
Sbjct: 520 LFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLF 579
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ G + ++M +M R S W T++ G+ +
Sbjct: 580 GRAGLLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAE 618
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ LS+D ++ L++ G D A VF+ + V +WN MI A + G +A
Sbjct: 199 VIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKA 258
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LLL+ M +P+ T V+ AC + +E G+ + GF+ + + + ++D+
Sbjct: 259 LLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDM 318
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KCG ++ + +F+KM + +VSWTTM+ G A G+ D A
Sbjct: 319 YVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEA 359
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI--CNGFRPDKF 80
C Y K VF+QI P+++ WN +IR Q+ L++ M+ C+ F P+KF
Sbjct: 121 CLIYAKN-----VFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEF-PNKF 174
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
TFPF+ KA + G +HG+ +KA S D+F+ ++L++ Y G D ++F M
Sbjct: 175 TFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNM 234
Query: 141 RVRSVVSWTTMISGLAASGDLDAA 164
+ VVSW MI+ A G D A
Sbjct: 235 PGKDVVSWNAMINAFALGGLPDKA 258
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFT--WNLMIRALTIDGSSLQALLLYNLM-ICNGF 75
+LD + G D A +F + PH +T WN +I A +G AL L++ M +
Sbjct: 346 MLDGHAKLGNYDEAHCIFDAM--PHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDA 403
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD+ T + A AI+ G +H K + + + ++L+D+Y KCG+++ +
Sbjct: 404 KPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAME 463
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+F + + V W+ MI LA G AA
Sbjct: 464 VFHAVERKDVYVWSAMIGALAMYGQGKAA 492
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L LLD+ + G + A+ VF + V+ W+ MI AL + G AL L++ M+
Sbjct: 444 LATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAY 503
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+P+ TF ++ AC + + +G+++ + G + ++D++ + G ++
Sbjct: 504 IKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKA 563
Query: 134 RKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+KM + + W ++ + G+++ A
Sbjct: 564 ASFIEKMPIPPTAAVWGALLGACSRHGNVELA 595
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 2 QKIIRYGLSNDQL-LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRAL--TIDG 58
Q I + N L L ++L + S D+A VF+QI P+ F WN +I A ++D
Sbjct: 47 QAIRNFSTHNSSLFLYSRILHVSSLI-DFDYACRVFNQIDNPNSFMWNTLIGACARSLDR 105
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ Y ++ PDK TFPF++KAC A+ +G++ H K G D++V +
Sbjct: 106 KEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGN 165
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+L+ LY CG + K+F+KM +RS+VSW MI SG + A
Sbjct: 166 SLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENA 211
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + GL D + L+ L + G AL VF ++ + +WN+MI A G
Sbjct: 151 QIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFEN 210
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ + + N F PD +T ++ AC A+ G H ++ + D+ + S+
Sbjct: 211 ALKLF-VEMQNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSS 269
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y KCG + +++F+ M + SW +MI LA G AA
Sbjct: 270 LVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAA 314
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
++ D L+ L+D+ S G A VF + + +WN MI AL + G AL +
Sbjct: 259 AMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCF 318
Query: 68 NLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYL 125
+ ++ F P+ TF V+ AC + G++ + V + L+DL
Sbjct: 319 SRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLS 378
Query: 126 KCGDVDGGRKMFDKMRVRS-VVSWTTMI 152
+ G +D ++ M ++ V W +++
Sbjct: 379 RSGFIDEALELVANMHIKPDAVIWRSLL 406
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+++ GL D L KL+++ G DHA VF + R +F WN + RAL +
Sbjct: 98 HRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGE 157
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIAS----LAIEKGKEVHGLAVKAGFSRDMFVQ 117
L+LY M G ++FT+ +V+KAC+ S + KGKE+H ++ G+ + V
Sbjct: 158 DLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVM 217
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+TL+D+Y + G V +F M +++VSW+ MI+ A +
Sbjct: 218 TTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKN 258
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R+G ++ LLD+ + +G +A VF + ++ +W+ MI + ++A
Sbjct: 205 ILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKA 264
Query: 64 LLLYNLMI---CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L L+ +M+ C+ P+ T V++AC + A+E GK VH ++ G + V +TL
Sbjct: 265 LELFQIMMLEACDTV-PNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTL 323
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ +Y +CG++ G+++FD M+ R V+SW ++IS
Sbjct: 324 ITMYGRCGEISTGQRVFDYMKKRDVISWNSLIS 356
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
+I++L G+ QA+ L +C P K TF +I +CI ++ G +VH V +G
Sbjct: 49 LIQSLCRGGNLKQAVQL----LCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSG 104
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+D ++ + L+++Y G VD K+FD+ R +++ W + LA
Sbjct: 105 LDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALA 151
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL + ++ L+ + G+ VF ++ V +WN +I + G +A
Sbjct: 308 VLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKA 367
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ ++ MI G P TF V+ AC + +E+ K
Sbjct: 368 IQIFENMINRGVSPSYITFITVLCACSHAGLVEEAK 403
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 86/156 (55%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
LSN KL++ + G + LVF + P F W ++I+ + +A+LLY+
Sbjct: 29 LSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDSFMWGVLIKCHVWSHAFEEAILLYD 88
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+CN + F FP V++AC + G +VHG +K GF D F++++L+ LY + G
Sbjct: 89 KMLCNEAQITSFVFPSVLRACAGFGDMFIGAKVHGRIIKCGFDNDPFIETSLLGLYGELG 148
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ RK+FD + VR +VSW+++IS G+ + A
Sbjct: 149 CLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEA 184
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
+ + L+ + S G +D A ++F+ I+ WN +I G+S++A+ L + M
Sbjct: 437 EFVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLVDQMYL 496
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
N + F I+AC + +EKGK +H + G +D+++++ L D+Y KCGD+
Sbjct: 497 NCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYIETALTDMYAKCGDLRT 556
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+F M +SVVSW+ MISG G +DAA
Sbjct: 557 AEGVFHSMSEKSVVSWSAMISGYGMHGRIDAA 588
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
D L L++L + GK + V I +V +WN ++ G +AL+L+ M
Sbjct: 335 QDDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEALVLFVQM 394
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G D F+ I AC +++ G+++HG A+K + FV++ L+ +Y +CG
Sbjct: 395 QKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCILGE-FVKNALIGMYSRCGFS 453
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D +F+ ++ +S V+W ++ISG SG+
Sbjct: 454 DSAYMIFNDIKQKSSVAWNSIISGFVQSGN 483
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G ND + LL L G A VF I + +W+ +I + G + +
Sbjct: 124 RIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANE 183
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ L++ + D V +AC ++ K +HG V+ + ++L++
Sbjct: 184 ALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIE 243
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y C D+ ++F M ++ +SWT+MI SG
Sbjct: 244 MYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSG 280
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
K+I YG+ D + L D+ + G A VF + V +W+ MI + G
Sbjct: 527 HKLIMYGVEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRID 586
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ +N M+ G +P+ TF ++ AC S ++E+GK L G + L+
Sbjct: 587 AAITFFNQMVELGIKPNHITFMNILSACSHSGSVEQGKFYFDLMRDFGVEPSSEHFACLV 646
Query: 122 DLYLKCGDVDGGRKMFDKM 140
DL + GDV+G K+ + M
Sbjct: 647 DLLSRAGDVNGAYKIINSM 665
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 12/173 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCS--------FYGKTD---HALLVFSQIRCPHVFTWNLMIR 52
I++ S +VR+ +D C Y D A +F + +W MI
Sbjct: 215 ILKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIY 274
Query: 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS- 111
G +A ++ M+ P+ T V+K+C + +GK +H A+K G +
Sbjct: 275 CYNRSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTF 334
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D + L++LY CG + K+ + R+VVSW T++S A G + A
Sbjct: 335 QDDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEA 387
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + + LL L + G A VF ++ + WN +I +G +A
Sbjct: 14 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 73
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G +PD FT ++ AC A+ GK VH +K G +R++ + L+DL
Sbjct: 74 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 133
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG V+ + +FD+M ++ VSWT++I GLA +G
Sbjct: 134 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 169
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
G+ +H + +++GF ++VQ++L+ LY CGDV K+FDKM + +V+W ++I+G A
Sbjct: 7 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66
Query: 158 SGDLDAA 164
+G + A
Sbjct: 67 NGKPEEA 73
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL+ + LLDL + G+ + A +F ++ + +W +I L ++G +A
Sbjct: 115 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 174
Query: 64 LLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
+ L+ M G P + TF ++ AC +++G E + ++ + + ++ +
Sbjct: 175 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE-YFRRMREEYKIEPRIEHFGCM 233
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+DL + G V + M ++ +VV W T++ GD D A
Sbjct: 234 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278
>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
Length = 1026
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQALL 65
G D+ +V L++ +GK A L+F++ P V++ NL++R + G + L
Sbjct: 68 GAIQDRFVVTGLVERYVSFGKPASAALLFAEAYRGRPAVYSLNLVVRCFSDHGFHRELLD 127
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY + GF D FTFP VI+AC A+ ++ G++VH ++ G ++ VQ+ L+D+Y
Sbjct: 128 LYRGLC--GFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGSNVGVQTALLDMYA 185
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G +D R++FD M +R ++SW M+SG + +G
Sbjct: 186 KAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNG 219
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ GL+ +V L+ + S GK D + L+F + WN MI ++ A
Sbjct: 368 IIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMA 427
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M G PD T VI C + + K +H AV+ F V + L+ +
Sbjct: 428 LDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAM 487
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y CGD+ +F KM VR ++SW TMISG A GD + +
Sbjct: 488 YADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETS 528
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D+ L L+ + + + + LVF + ++N MI A + +A
Sbjct: 267 LKGGTIDDESLTSALISMYAAFDDLSSSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAF 326
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ LM C G P+ T V+ +C L I G+ VHG+ +K G + + V S L+ +
Sbjct: 327 EVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMIIKLGLAEQVSVVSALVSM 386
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G +D +F ++ + W +MISG + + + A
Sbjct: 387 YSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMA 427
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R + Q ++ LL + + G + +F ++ + +WN MI G S +L
Sbjct: 470 VRNRFESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSL 529
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEK----GKEVHGLAVKAGFSRDMFVQSTL 120
L+ C F + + + I+SL++ + G+ VH LA+K+G D+ + + L
Sbjct: 530 TLF----CQMFHEEVWFDLVTLIGLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNAL 585
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ +Y CG V+ G+++F+ R+ +++ ++SG
Sbjct: 586 ITMYANCGIVEAGQQLFNSFCSRNTITYNALMSG 619
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G ++ + LLD+ + G+ D + VF + + +WN M+ +++G +
Sbjct: 164 RVLRTGHGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFRE 223
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ M G P+ T ++ C ++ G +H A+K G D + S L+
Sbjct: 224 AVETLQEMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALIS 283
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y D+ R +FD V+ +VS+ +MIS
Sbjct: 284 MYAAFDDLSSSRLVFDLQPVKDLVSFNSMISA 315
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
S + ++ +FS + ++ WN + A + + + M+ RPD+ T
Sbjct: 688 SRFNNIEYCRTIFSLVSARNLIVWNAFLSACVQCKQADMVVDYFKHMLFLNVRPDEVTML 747
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+I AC + + + ++ GFS ++ V + L+D + +CG + R++FD +
Sbjct: 748 ALISACSQLGNADFAACIMAVILQKGFSMNILVLNALIDTHSRCGSISFARELFDSSVEK 807
Query: 144 SVVSWTTMISGLAASGDLDAA 164
V+W MI+ + G+ +AA
Sbjct: 808 DSVTWGAMINAYSMHGNGEAA 828
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
M I++ G S + L++ L+D S G A +F TW MI A ++ G+
Sbjct: 766 MAVILQKGFSMNILVLNALIDTHSRCGSISFARELFDSSVEKDSVTWGAMINAYSMHGNG 825
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQST 119
AL L+++MI +G PD TF ++ AC + +E+G+ + L G + M +
Sbjct: 826 EAALDLFSMMIDSGVDPDDITFVSILSACSHNGLVEQGRTLFKSLQADHGITPRMEHYAC 885
Query: 120 LMDLYLKCGDVDGGRKMFDKM 140
++DL + G +D + M
Sbjct: 886 MVDLLGRTGHLDEAYDIVRSM 906
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 77/133 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + AL +F + +V +WN MI + +G + AL L+ M +P+ TF V+
Sbjct: 336 GQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVL 395
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A +E+G E H + +++GF D+ V +TL+ +Y KCG ++ RK+FD+MR +
Sbjct: 396 PACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSA 455
Query: 147 SWTTMISGLAASG 159
S + MI G A +G
Sbjct: 456 SLSAMIVGYAING 468
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L KL+ + G A VF ++ +V +W MI A +AL + M
Sbjct: 99 DISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQ 158
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G +P+ FTF ++ AC +E E H VK GF ++FV + L+D+Y K G ++
Sbjct: 159 DVGIQPNHFTFASILPACTD---LEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIE 215
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R++FDKM R VVSW MI+G +G ++ A
Sbjct: 216 FARELFDKMPQRDVVSWNAMIAGYVQNGLIEDA 248
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109
++++L G +AL + M+ NG P T+ +++ C+ + ++ K +H ++
Sbjct: 35 LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94
Query: 110 FS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
F +D+ + + L+ +Y+K G + R++FD+M V++VVSWT MI+ A
Sbjct: 95 FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYA 142
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G +D L+ L+ + + G + A VF ++R + + MI I+G S ++
Sbjct: 414 VIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKES 473
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
L L+ M G +PD+ TF V+ AC + +++G++ + + + M ++D
Sbjct: 474 LELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMID 533
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
L + G D + +KM ++ W +++S ++D
Sbjct: 534 LLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNID 574
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 39/162 (24%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G ++ + L+D+ + G + A +F ++ V +WN MI +G
Sbjct: 188 EIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIED 247
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ P RD+ +T+M
Sbjct: 248 ALKLFQ------------EIP---------------------------KRDVITWNTMMA 268
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CGDV+ ++F+KM +++VSW TMI+G +G + A
Sbjct: 269 GYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEA 310
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 39/138 (28%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A+ +F ++ ++ +WN MI +GS +A L+ +M P++ +
Sbjct: 274 GDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIM------PERNVISWN- 326
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AV +GF+++ G V+ K+F M +VV
Sbjct: 327 ------------------AVISGFAQN--------------GQVEEALKLFKTMPECNVV 354
Query: 147 SWTTMISGLAASGDLDAA 164
SW MI+G + +G + A
Sbjct: 355 SWNAMIAGYSQNGQAENA 372
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VFS++ +V +WNLMI G + L + M GF+PD+ T ++
Sbjct: 466 GDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISIL 525
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+AC A A+E+GK VH AVK G D V ++L+ +Y KCG+V R +FDK+ R V
Sbjct: 526 EACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTV 585
Query: 147 SWTTMISGLAASG 159
+W M++G G
Sbjct: 586 AWNAMLAGYGQHG 598
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D + L+ + S G+ A +F +++ +V +W +I+A +A LY
Sbjct: 209 GMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELY 268
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ G P+ TF ++ +C A+ +G+ +H + G D+ V + L+ +Y KC
Sbjct: 269 EKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKC 328
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+ R+ FD+M R V+SW+ MI+G A SG D
Sbjct: 329 NCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQD 363
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL+ D L L++ S +G VF ++ V TW+ MI A + +A +
Sbjct: 108 GLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTF 167
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M P++ TF ++KAC +EK +E+H + +G D+ V + L+ +Y KC
Sbjct: 168 ERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKC 227
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G++ ++F KM+ R+VVSWT +I A L+ A
Sbjct: 228 GEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEA 264
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 5/166 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG----S 59
I GL D ++ L+ + A F ++ V +W+ MI G
Sbjct: 306 ISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKE 365
Query: 60 SL-QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
SL + L M G P+K TF ++KAC A+E+G+++H K GF D +Q+
Sbjct: 366 SLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQT 425
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++Y KCG + ++F KM ++VV+W ++++ GDL +A
Sbjct: 426 AIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSA 471
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%)
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ L ++ G + T+ +I+ C E GK VH + G + D+++ ++L+
Sbjct: 61 EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ Y K GDV ++F +M +R VV+W++MI+ A +
Sbjct: 121 NFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNN 158
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ GL +D ++ L+ + S G+ A VF +I WN M+ G +
Sbjct: 543 EAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPE 602
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
A+ L+ M+ P++ TF VI AC + +++G+E+
Sbjct: 603 AVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREI 641
>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
Length = 744
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G ++ + L+D S G+ D A VF I + +W M+ + +A
Sbjct: 165 IFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEA 224
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ M GF+P+ FTF V KAC+ A + GK VHG A+K+ + D++V L+DL
Sbjct: 225 LKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDL 284
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y K GD+D R+ F+++ + V+ W+ MI+ A S
Sbjct: 285 YTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQS 319
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 74/146 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLDL + G D A F +I V W+ MI S +A+ ++ M P+
Sbjct: 281 LLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FTF V++AC + G ++H +K G D+FV + LMD+Y KCG ++ ++F
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFA 400
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ R+ V+W T+I G GD + A
Sbjct: 401 ESPHRNDVTWNTVIVGHVQLGDGEKA 426
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L+A+ L+ + G + F F ++K +++ E G +H K G + FV + L
Sbjct: 121 LEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTAL 180
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+D Y CG VD R++FD + + +VSWT M++ A +
Sbjct: 181 IDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEN 218
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL +D + L+D+ + G+ ++++ +F++ + TWN +I G +A
Sbjct: 367 VIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKA 426
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ + + T+ ++AC + A+E G ++H L VK D ++
Sbjct: 427 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKP----DKLTFVGVLSA 482
Query: 124 YLKCGDVDGGRKMFDKMRVRS-----VVSWTTMISGLAASGDLDAA 164
G +D G+ F M + +T M+ L G LD A
Sbjct: 483 CANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKA 528
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 77 PDKFT---FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
P +F + ++ CI +GK +H +K G D+F + L+++Y+K +
Sbjct: 33 PSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92
Query: 134 RKMFDKMRVRSVVSWTTMISGLAAS 158
K+FD+M R+ +S+ T+I G A S
Sbjct: 93 SKLFDEMPERNTISFVTLIQGYAES 117
>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
(PID:g473874) [Arabidopsis thaliana]
Length = 597
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 9/168 (5%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVF------TWNLMIR 52
Q+I+ GL D +L + L+++ C + H F +++ +WN +I
Sbjct: 55 QRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWNTVIS 114
Query: 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
G + +AL L+ M +GF P+ + I AC L +E+GKE+H VK GF
Sbjct: 115 CFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFEL 174
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D +V S L+D+Y KC ++ R++F KM +S+V+W +MI G A GD
Sbjct: 175 DEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGD 222
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCS-----FYGKTDHALL---VFSQIRCPHVFTWNLMIR 52
+ ++I G Q + +L CS +GK HA L VFS+ + +WN+MI
Sbjct: 230 LNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHANLAETVFSKTQKDVAESWNVMIS 289
Query: 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
+ G+ +A+ +Y+ M+ G +PD TF V+ AC A+EKGK++H ++
Sbjct: 290 SYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLET 349
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D + S L+D+Y KCG+ ++F+ + + VVSWT MIS + G A
Sbjct: 350 DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREA 401
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDG 58
+K ++ G D+ + L+D+ YGK D A VF ++ + WN MI+ G
Sbjct: 165 RKCVKKGFELDEYVNSALVDM---YGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKG 221
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM--FV 116
S + + N MI G RP + T ++ AC S + GK +H + FS+
Sbjct: 222 DSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHANLAETVFSKTQKDVA 281
Query: 117 QS--TLMDLYLKCGDVDGGRKMFDKM 140
+S ++ Y+ G+ +++D+M
Sbjct: 282 ESWNVMISSYISVGNWFKAVEVYDQM 307
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L D+LL+ LLD+ S G A +F+ I V +W +MI A G +AL ++
Sbjct: 347 LETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFD 406
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKG 98
M G +PD T V+ AC + I++G
Sbjct: 407 EMQKFGLKPDGVTLLAVLSACGHAGLIDEG 436
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 85 VIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+++ C S ++ + K VH + G RD+ + +L+++Y C D R +F+ +R
Sbjct: 36 LLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIR 95
Query: 144 SVV---------SWTTMISGLAASGDLDAA 164
S V SW T+IS SG+ + A
Sbjct: 96 SDVYIWNSLMSASWNTVISCFYQSGEAEKA 125
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D + L+ L + +G+ D A LVF + TW +I T G S +
Sbjct: 168 VIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVS 227
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+NLM+ + PDK+ ++ AC ++ GK++H +++ D+ + L+D
Sbjct: 228 LQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDF 287
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG-LAASGDLDA 163
Y KCG V G+ +FD++ V++++SWTTMI+G + S D +A
Sbjct: 288 YTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEA 328
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+YG S D+ L+D+ S A VF + WN + + S +A
Sbjct: 471 IIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEA 530
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LY+ + + RP++FTF + A ++ G++ H +K G D F+ + L+D+
Sbjct: 531 FKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDM 590
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ K+F + W +MIS A G ++ A
Sbjct: 591 YAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEA 631
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D + G+ +F ++ ++ +W MI + +A+ L M G++PD
Sbjct: 284 LIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPD 343
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ V+ +C + A++ G+++H +K D FV + L+D+Y KC +D +++FD
Sbjct: 344 EYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFD 403
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ SVV + MI G + G L A
Sbjct: 404 VVTCHSVVYYNAMIEGYSRQGYLCGA 429
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ L +D + L+D+ S D A VF + C V +N MI + G A
Sbjct: 370 VIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGA 429
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M P TF ++ A L ++ K++HGL +K GFS D F S L+D+
Sbjct: 430 LEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDV 489
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y KC + R +F+ + +V W ++ SG
Sbjct: 490 YSKCSCIRDARYVFEGTTNKDIVVWNSLFSG 520
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ +GL D L LL G A +F ++ ++ +W+ ++ T G + +
Sbjct: 65 QVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEK 124
Query: 63 ALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
ALL + + +++ +I+AC+ E G +VH +K+GF D++V ++L+
Sbjct: 125 ALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLV 184
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY K G++D R +FD + +++ V+WT +I+G SG
Sbjct: 185 VLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSG 222
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++++ GL +D + L+D+ + G + A +FS WN MI G
Sbjct: 570 NQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVE 629
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL ++ M+ N P+ TF V+ AC +E G + + + G + ++++
Sbjct: 630 EALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYGIEPGIEHYASVV 689
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G + R+ +KM +R + + W +++S G+++ A
Sbjct: 690 TLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELA 733
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
A +++ +I ++VH V G D+F+ + L+ Y K G V +FDKM R++VS
Sbjct: 49 APVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVS 108
Query: 148 WTTMIS 153
W++++S
Sbjct: 109 WSSVVS 114
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPF 84
+G A VF ++ ++F+WN+++ G +A+ LY+ M+ G +PD +TFP
Sbjct: 142 FGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPC 201
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V++ C + +GKEVH V+ G+ D+ V + L+ +Y+KCGDV R +FD+M R
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261
Query: 145 VVSWTTMISGLAASG 159
++SW MISG +G
Sbjct: 262 IISWNAMISGYFENG 276
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++RYG D +V L+ + G A L+F ++ + +WN MI +G +
Sbjct: 222 VVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEG 281
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M PD T VI AC G+++H + GF+ D+ V ++L +
Sbjct: 282 LELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQM 341
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
YL G K+F +M + +VSWTTMISG
Sbjct: 342 YLNAGSWREAEKLFSRMERKDIVSWTTMISG 372
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + D + L + G A +FS++ + +W MI + +A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKA 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y +M + +PD+ T V+ AC ++ G E+H LA+KA + V + L+++
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC +D +F + ++V+SWT++I+GL
Sbjct: 443 YSKCKCIDKALDIFHNIPRKNVISWTSIIAGL 474
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 21 DLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L + Y K D AL +F I +V +W +I L ++ +AL+ M +P
Sbjct: 438 NLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQP 496
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ T + AC A+ GKE+H ++ G D F+ + L+D+Y++CG ++ F
Sbjct: 497 NAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF 556
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
+ + + V SW +++G + G
Sbjct: 557 NSQK-KDVTSWNILLTGYSERG 577
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ D L LLD+ G+ + A F+ + V +WN+++ + G
Sbjct: 524 VLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMV 582
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M+ + RPD+ TF ++ C S + +G G + ++ + ++DL
Sbjct: 583 VELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDL 642
Query: 124 YLKCGDVDGGRKMFDKMRV 142
+ G++ K KM V
Sbjct: 643 LGRAGELQEAHKFIQKMPV 661
>gi|255569403|ref|XP_002525669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535105|gb|EEF36787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 494
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
++ WNLMIR+ T G QAL +Y+ M+ +G + FTFP ++KAC + +I G ++H
Sbjct: 15 LYLWNLMIRSSTKAGLFFQALDIYSSMLQSGVHGNGFTFPLLLKACSNTNSIRDGTKIHS 74
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ GF + +FV +TL+D+Y KC D+ RK+FD+M +RS VSW ++IS
Sbjct: 75 HLIQLGF-QHVFVMTTLLDMYSKCYDLASSRKVFDEMPMRSTVSWNSIISA 124
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++YG + + L+ + S G A F R ++ W MI A T G +QA
Sbjct: 274 LVKYGCDDKDPIDNLLVTMYSKCGDLISAQRAFDIAREKSLYLWTSMIAAYTHLGYPVQA 333
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N ++ +P++ T ++ AC ++ G+E+ + G + VQ++L+ +
Sbjct: 334 LRLFNTLLGTAIKPNEATLATILSACADLGSLSMGEEIEEYILANGLHSSVQVQTSLIHM 393
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +CG ++ + +F+++ + + +W++MI+G A G + A
Sbjct: 394 FCRCGSLEKAKAVFERLATKDLAAWSSMINGYAIHGMAEEA 434
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 3/156 (1%)
Query: 6 RYGL--SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++GL +D L LL++ +G+ A +F + + +W +I G+ +A
Sbjct: 174 KFGLLEGSDIPLTNALLNMYVKHGQVHEARTLFDMMHEKSLISWTTVIGGYVDFGNVREA 233
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+N M + R D F +I C + VH L VK G + + L+ +
Sbjct: 234 FSLFNQMRIS-MRLDFIVFITLISGCAREGNLLLASSVHSLLVKYGCDDKDPIDNLLVTM 292
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGD+ ++ FD R +S+ WT+MI+ G
Sbjct: 293 YSKCGDLISAQRAFDIAREKSLYLWTSMIAAYTHLG 328
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ +WN +I A +A+ + M GF P TF + C+
Sbjct: 106 VFDEMPMRSTVSWNSIISAYCRFFLVDEAISMLQKMRLIGFVPTSTTFLCFLPICL---- 161
Query: 95 IEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
++ G + A K G D+ + + L+++Y+K G V R +FD M +S++SWTT+I
Sbjct: 162 LQHGLSIQCCAFKFGLLEGSDIPLTNALLNMYVKHGQVHEARTLFDMMHEKSLISWTTVI 221
Query: 153 SGLAASGDLDAA 164
G G++ A
Sbjct: 222 GGYVDFGNVREA 233
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFR 76
KLL+L G A L F + VF WN+MI G + +AL LY+ M +
Sbjct: 51 KLLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVSSTN 110
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD +T+ V+ AC ++ +GK ++ + G D+ V++ L+++++KCG ++ R++
Sbjct: 111 PDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIEDARRV 170
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FDKM R++VSWT M+SG A G D A
Sbjct: 171 FDKMCERNLVSWTAMVSGYAQGGFADEA 198
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 82/160 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II G D ++ L+++ G + A VF ++ ++ +W M+ G + +
Sbjct: 138 EIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADE 197
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M + + T V+ AC +++GKE+HG ++ G + V + L+D
Sbjct: 198 ALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALID 257
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+Y KCG + +K+FDKM R VVSW I+G A +G D
Sbjct: 258 MYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFD 297
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 27 GKTDHALLVFSQIRCP----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ D + +F +++C V TWN +I A +G Q L L+ M G +P+ T
Sbjct: 294 GRFDECMELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITI 353
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
V+ AC A A+++GK +H L ++ D+ V + L+D+
Sbjct: 354 ASVLSACAAVSALQEGKRIHDLVNRSECKSDICVGNALIDM 394
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C + + + K+VH + G R V++ L++LY+KCG + R FD M V W
Sbjct: 21 CTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTKGDVFPW 80
Query: 149 TTMISGLAASGDLDAA 164
MI G G+ A
Sbjct: 81 NVMIGGYVKHGETREA 96
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 87/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G N+ L K++ L +G A VF + +++M++ + S A
Sbjct: 70 IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M+C+ R + +++ C +L ++KG+E+HGL + GF ++FV + +M L
Sbjct: 130 LCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSL 189
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC +D KMF++M+ + +VSWTT+++G A +G
Sbjct: 190 YAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNG 225
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L ++ ++ L+ + S + D A +F+ + +V TWN MI +G +AL L+
Sbjct: 378 LDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFC 436
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+M G + D FT VI A + K +HGLAV+A ++FV + L+D+Y KCG
Sbjct: 437 MMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCG 496
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ RK+FD M+ R V++W MI G G
Sbjct: 497 AIKTARKLFDMMQERHVITWNAMIDGYGTHG 527
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G ++ ++ ++ L + + D+A +F +++ + +W ++ +G + +A
Sbjct: 171 IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRA 230
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L M G +PD T ++ A A+ G+ +HG A ++GF + V + L+D+
Sbjct: 231 LQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDM 290
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG R +F MR ++VVSW TMI G A +G+ + A
Sbjct: 291 YFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEA 331
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 1/159 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + + LLD+ G A LVF +R V +WN MI +G S +A
Sbjct: 274 RSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFA 333
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ M+ G P + T V+ AC +E+G VH L K ++ V ++L+ +Y
Sbjct: 334 TFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYS 393
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC VD +F+ + ++ V+W MI G A +G + A
Sbjct: 394 KCKRVDIAASIFNNLE-KTNVTWNAMILGYAQNGCVKEA 431
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R + N+ + L+D+ + G A +F ++ HV TWN MI G + L
Sbjct: 474 VRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETL 533
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST----- 119
L+N M +P+ TF VI AC S +E+ GL + D +++ T
Sbjct: 534 DLFNEMQKGAVKPNDITFLSVISACSHSGFVEE-----GLLLFKSMQEDYYLEPTMDHYS 588
Query: 120 -LMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
++DL + G +D +M ++ +S
Sbjct: 589 AMVDLLGRAGQLDDAWNFIQEMPIKPGIS 617
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G+S D + LLDL G + A +F+ +V WNLM+ A ++
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M G P+KFT+P +++ C + IE G+++H L++K GF DM+V L+D+
Sbjct: 331 FEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K +D RK+ + + R VVSWT+MI+G
Sbjct: 391 YSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + D + L++L + G+++ A +F +I TWN +I QAL+++
Sbjct: 477 GYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVF 536
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M G + + FTF I A +A+LA I++GK+VHG AVK G + + V + L+ LY K
Sbjct: 537 MKMSQAGAKYNVFTFISAISA-LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGK 595
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CG ++ + +F +M +R+ VSW T+I+ + G
Sbjct: 596 CGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
T+N +I G AL +++ M +G RPD T ++ AC + ++KGK++H
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL 271
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+KAG S D + +L+DLY+KCGD++ +F+ +VV W M+ DL
Sbjct: 272 LKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + L+D+ S Y D A + + V +W MI +AL
Sbjct: 373 IKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEAL 432
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M G PD AC A+ +G ++H +G++ D+ + +TL++LY
Sbjct: 433 ATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLY 492
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+CG + +F ++ + ++W +ISG S
Sbjct: 493 ARCGRSEEAFSLFREIDHKDEITWNGLISGFGQS 526
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D+L+ L+DL + G A VF ++ +W M+ G +A LY
Sbjct: 73 GLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLY 132
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M P + V+ AC +G+ +H K F + FV + L+ LYL
Sbjct: 133 SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G ++F M V++ T+ISG A G + A
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECA 229
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++ G +++ + L+ L G + A ++FS++ + +WN +I + + G L+
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE 632
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMF 115
AL L++ M G +P+ TF V+ AC +E+G V+GL D +
Sbjct: 633 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP----DHY 688
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ ++D+ + G +D R+ D+M + + + W T++S +++
Sbjct: 689 --ACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIE 734
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H +V G D + + L+DLY K G V R++F ++ R VSW M+SG A G
Sbjct: 64 EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G D A VF + +V +WN +I +G S +AL ++ M+ +GF PD
Sbjct: 192 LIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPD 251
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMF 137
+ T V+ AC + A ++G E+H VK R D+ + + L+D+Y KCG ++ R +F
Sbjct: 252 EVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVF 311
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D+M +R+VVS T+M+SG A + + AA
Sbjct: 312 DRMPIRNVVSETSMVSGYAKTASVKAA 338
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 12/160 (7%)
Query: 12 DQLLVRKLLD---LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ +R ++ + S Y KT A L+F+++ +V +WN +I T +G + +AL
Sbjct: 312 DRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALR 371
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF------SRDMFVQST 119
L+ ++ P +TF ++ AC ++ G++ H +K GF D+FV +
Sbjct: 372 LFRMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNA 431
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y+KCG V+ G ++F+ M R VSW MI G A +G
Sbjct: 432 LIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNG 471
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 31/188 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG---- 58
+II+ + + + +L+D G D A +F Q+ +VF+WN ++ L G
Sbjct: 44 RIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEKNVFSWNAIVSTLVKSGFLDE 103
Query: 59 ----------------SSL-----------QALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+SL +AL + M GF +++TF + AC
Sbjct: 104 GARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAG 163
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
++ G ++HGL +K+ F D+++ S L+D+Y KCG VD +++FD M R+VVSW ++
Sbjct: 164 LKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSL 223
Query: 152 ISGLAASG 159
I+ +G
Sbjct: 224 ITCYEQNG 231
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D F ++ +C+ S ++ + +H +K F+ ++F+Q+ L+D Y KCG D RK+F
Sbjct: 18 DSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIF 77
Query: 138 DKMRVRSVVSWTTMISGLAASGDLD 162
D+M ++V SW ++S L SG LD
Sbjct: 78 DQMPEKNVFSWNAIVSTLVKSGFLD 102
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+YG +D + L+D+ G + +F + +WN MI +G ++AL
Sbjct: 419 QYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALG 478
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
L+ M+ +G +PD T + AC + +++G++
Sbjct: 479 LFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRK 513
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL +D++L L+D+ G D A +F +I V +W MI +
Sbjct: 244 IVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREG 303
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ ++ + RP+++TF V+ AC E GK+VHG + GF F S+L+D+
Sbjct: 304 FSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDM 363
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+++ + + D +VSWT++I G A +G D A
Sbjct: 364 YTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEA 404
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 21 DLCSF---------YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM- 70
DLCS+ G + A +F ++ ++W M+ +AL+LY+LM
Sbjct: 150 DLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 209
Query: 71 -ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+ N RP+ FT + A A I +GKE+HG V+AG D + S+LMD+Y KCG
Sbjct: 210 RVPNS-RPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGC 268
Query: 130 VDGGRKMFDKMRVRSVVSWTTMI 152
+D R +FDK+ + VVSWT+MI
Sbjct: 269 IDEARNIFDKIVEKDVVSWTSMI 291
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+P T+ +I+ C + A+E+GK+VH +GF + + + L+ +Y KCG + RK
Sbjct: 82 KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARK 141
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R + SW M++G A G L+ A
Sbjct: 142 VFDEMPNRDLCSWNVMVNGYAEVGLLEEA 170
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G L+D+ + G + A V P + +W +I +G +A
Sbjct: 345 MTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEA 404
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L ++L++ +G +PD TF V+ AC + +EKG E + + K S + L+D
Sbjct: 405 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVD 464
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G + + + +M ++ S W +++ G + G++D A
Sbjct: 465 LLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLA 507
>gi|255578455|ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530403|gb|EEF32291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 718
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I++ G + +L L+D+ YGK A L+F++I + TWN+++R G+
Sbjct: 184 IVKCGFCGNVILGSALVDV---YGKCKVMSEARLMFNEIENCNDVTWNVIVRRYLDVGNE 240
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+ ++ M RP FTF + AC A A+ +G ++H A+K F D V S+L
Sbjct: 241 REAVKMFFKMFQTDVRPLNFTFSNALIACSAMRALNEGMQIHAFAIKIKFEEDEAVSSSL 300
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y KCG ++ R +FD+ R V+SWT+M+S A SG A
Sbjct: 301 SNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREA 344
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQ 62
I R+G S+ L+ LLD+ G A + F Q+ + +WN ++ + S Q
Sbjct: 417 IYRHGFSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALLTSYARHHQSEQ 476
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A++++ M +P FTF ++ AC A+++GKE+HG ++ G++ D + L+D
Sbjct: 477 AMMIFGEMQWET-KPSTFTFGTLLAACANIFALDQGKEIHGFMIRNGYNLDTVISGALVD 535
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC + +F++ R V+ W ++I G +G
Sbjct: 536 MYSKCRCLSYALTVFNRAGSRDVILWNSIILGCCHNG 572
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN +I+A T G + +AL L+ M G ++ TF V+K+C L + +++HGL
Sbjct: 125 SWNAIIKAYTQCGYAEKALGLFKDMNKEGVFANEITFASVLKSCSDVLDLSLSRQIHGLI 184
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
VK GF ++ + S L+D+Y KC + R MF+++ + V+W ++
Sbjct: 185 VKCGFCGNVILGSALVDVYGKCKVMSEARLMFNEIENCNDVTWNVIV 231
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ D+ + L ++ + GK + A ++F Q V +W M+ A + G + +A
Sbjct: 286 IKIKFEEDEAVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREAR 345
Query: 65 LLY-----------NLMICNGFRP--------------------DKFTFPFVIKACIASL 93
L+ N M+ R D T ++ C
Sbjct: 346 ELFEKMPEWSVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAGIS 405
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMI 152
+E GK+ HG + GFS + V + L+D+Y KCG++ R F +M + R +SW ++
Sbjct: 406 DVEMGKQAHGFIYRHGFSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALL 465
Query: 153 SGLAASGDLDAA 164
+ A + A
Sbjct: 466 TSYARHHQSEQA 477
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + D ++ L+D+ S +AL VF++ V WN +I +G +
Sbjct: 518 MIRNGYNLDTVISGALVDMYSKCRCLSYALTVFNRAGSRDVILWNSIILGCCHNGRGKEV 577
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI----ASLAIE 96
L L+ M G +PD TF V+ AC+ LA+E
Sbjct: 578 LKLFGQMEKEGVKPDHVTFHGVLLACMYEGHVKLAVE 614
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSS 60
II+ GL L+ L++ FY KT LL VF + TW+ +I + +
Sbjct: 80 IIKSGLQVIPLVCHYLIN---FYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEP 136
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ A+ + MI PD FP KAC + GK VH L +K G+ D+FV S+L
Sbjct: 137 VLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSL 196
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KCGD+ R +FD+M R+VVSW+ MI G G+ + A
Sbjct: 197 VDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEA 240
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D + L+D+ + G A VF ++ +V +W+ MI T G +A
Sbjct: 181 VIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEA 240
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ + G + FT VI+ C ++ +E GK++HGL K + FV S+L+ L
Sbjct: 241 MRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISL 300
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++G ++FD++ ++++ W M+ A A
Sbjct: 301 YSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEA 341
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+ L S G + A VF ++ ++ WN M+ A + +A L+ M G RP+
Sbjct: 297 LISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPN 356
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF V+ AC + +E+GK+ L K ++++DL + G + +
Sbjct: 357 FITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIK 416
Query: 139 KMRVRSVVS-WTTMISGLAASGDLDAA 164
M S W I+G G+ D A
Sbjct: 417 GMPTEPTESVWGAFITGCRIHGNTDLA 443
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHA----LLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
L ND ++ +L+ + S D A LL+ S P TWN++ R + + +++
Sbjct: 40 SLQNDSFIISELIRVSSLSHTKDLAFARTLLLHSSDSTPS--TWNMLTRGYSSSDTPVES 97
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +Y+ M +P+K TFPF++KAC + L + G+++ +K GF D++V + L+ L
Sbjct: 98 IWVYSEMKRRRIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDSDVYVGNNLIHL 157
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y C RK+FD+M R+VVSW ++++ L +G +
Sbjct: 158 YGSCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKFN 196
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++++G +D + L+ L KT A VF ++ +V +WN ++ AL +G
Sbjct: 138 EVLKHGFDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKFNL 197
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ + MI F PD+ T ++ AC +L++ GK VH + + + + L+D
Sbjct: 198 VVECFFEMIGRQFCPDETTMVVLLSACGGNLSL--GKLVHSQVMVRELELNCRLGTALVD 255
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G + R +F++M ++V +W+ MI GLA G + A
Sbjct: 256 MYAKSGGLKYARLVFERMADKNVWTWSAMIVGLAQYGFAEEA 297
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 9 LSNDQLLVRKL----------LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
L + Q++VR+L +D+ + G +A LVF ++ +V+TW+ MI L G
Sbjct: 233 LVHSQVMVRELELNCRLGTALVDMYAKSGGLKYARLVFERMADKNVWTWSAMIVGLAQYG 292
Query: 59 SSLQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFV 116
+ +AL L++ +M + RP+ TF V+ AC + ++ G K H + + M
Sbjct: 293 FAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKRHKIKPMMIH 352
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++D+ + G ++ KM V W T++S + D D
Sbjct: 353 YGAMVDILGRAGRLNEAYDFIQKMPFEPDAVVWRTLLSACSIHHDED 399
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G D L KL+++ G D AL VF + R ++ WN + RAL + G +
Sbjct: 104 LVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKEL 163
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIAS----LAIEKGKEVHGLAVKAGFSRDMFVQST 119
L LY M G D+FT+ +V+KAC+ S + KGKE+H ++ G+ ++ V +T
Sbjct: 164 LDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTT 223
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
L+D+Y K G V +F M ++ VSW+ MI+ A +
Sbjct: 224 LLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKN 262
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R+G + ++ LLD+ + +G +A VF + + +W+ MI + ++A
Sbjct: 209 ILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKA 268
Query: 64 LLLYNLMI---CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L L+ LM+ CN P+ T +++AC A+E+GK +HG ++ + V + L
Sbjct: 269 LELFQLMMFEACNSV-PNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNAL 327
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ +Y +CG+V G+++FD M+ R VVSW ++IS
Sbjct: 328 ITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLIS 360
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L G+ QAL L +C P + TF +I +C ++ G +VH V
Sbjct: 51 NQLIQSLCKGGNLKQALHL----LCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+GF +D F+ + L+++Y + G +D K+FD+ R R++ W + LA G
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVG 158
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 22 LCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + YG+ L+ VF ++ V +WN +I + G +A+ ++ MI G P
Sbjct: 327 LITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPS 386
Query: 79 KFTFPFVIKACIASLAIEKGK 99
+F V+ AC + +E+GK
Sbjct: 387 YISFITVLGACSHAGLVEEGK 407
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 25 FYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
FY K D A L+FS++R +VF+W +I G AL+ + M+ NG PD F
Sbjct: 96 FYAKCDALEIAELLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFV 155
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
P V KAC A G+ VHG VKAGF +FV S+L D+Y KCG +D RK+FD++
Sbjct: 156 VPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEIP 215
Query: 142 VRSVVSWTTMISGLAASG 159
R+VV+W ++ G +G
Sbjct: 216 ERNVVAWNALMVGYVQNG 233
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + + L D+ G D A VF +I +V WN ++ +G + +A
Sbjct: 179 VVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEA 238
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M G P + T + A IE+GK+ H +AV G D + +++++
Sbjct: 239 IRLFSDMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNF 298
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G ++ +FD+M + VV+W +ISG G ++ A
Sbjct: 299 YCKVGLIECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDA 339
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 27 GKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ + A +F Q++ P++ +W M+ L +G S +A+L M +G RP+ F+
Sbjct: 470 GQVNEAKEMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNVFSI 529
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ AC ++ G+ +HG ++ + ++++L+D+Y KCGD++ ++F
Sbjct: 530 TVALSACANLASLHYGRSIHGYIIRNQRHCSSVSIETSLVDMYAKCGDINKAERVFRSKL 589
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+ + MISG A G++ A
Sbjct: 590 YSELPLYNAMISGFAVYGNVKEA 612
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D +L +L+ G + A ++F ++ V TWNL+I G Q L+
Sbjct: 284 GLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLI-----SGYVQQGLVED 338
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEK-----GKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +C R + F V + + S A GKEV ++ D+ + ST +D
Sbjct: 339 AIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLESDIVLASTAVD 398
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG + +K+FD + ++ W T++ A SG
Sbjct: 399 MYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESG 435
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG- 109
+ +L G +AL L M R + +++ C+ + GK++H +K G
Sbjct: 22 VSSLCKSGEIREALSLVTEMDFRKIRIGPEIYGEILQGCVYKRNLCTGKQIHARILKKGD 81
Query: 110 -FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
++R+ ++++ L+ Y KC ++ +F K+RVR+V SW +I
Sbjct: 82 FYARNEYIETKLVIFYAKCDALEIAELLFSKLRVRNVFSWAAII 125
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A VF + +N MI + G+ +A+ LY + G +PD
Sbjct: 568 LVDMYAKCGDINKAERVFRSKLYSELPLYNAMISGFAVYGNVKEAIGLYRSLEDMGIKPD 627
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF ++ AC + I + E+ + K G + ++DL G+ D ++
Sbjct: 628 SITFTSLLSACNHAGDINQAFEIFTDMVSKHGLKPCLEHYGLMVDLLASAGETDKALRLM 687
Query: 138 DKM 140
++M
Sbjct: 688 EEM 690
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 9/159 (5%)
Query: 15 LVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRAL-TIDGSS-----LQALLL 66
L +LL CSF Y ++A VF I+ P + +N+MIR+ I+G +AL+L
Sbjct: 56 LFTRLLYFCSFSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALML 115
Query: 67 YNLMICNGFRPDKFTFPFVIKACIA-SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
Y M+ G P+ TFPF++K C G+ +H +K GF D+FV ++L+ L++
Sbjct: 116 YKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFM 175
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G RK+FD+M VR VVSW +M+ G +G+++ A
Sbjct: 176 NFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMA 214
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 12 DQLLVRKLLDLCSFY------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ VR ++ S G+ + AL +F ++ ++ TWN +I L G + ++L
Sbjct: 188 DEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLE 247
Query: 66 LYNLM-ICNG---FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+++ M +G +PDK T V+ AC +I+ GK VH K D+ + + L+
Sbjct: 248 IFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALV 307
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++Y KCGDV ++F+ M + +WT MIS A G
Sbjct: 308 NMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHG 345
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL D LV + + + ++ VF ++ P F WN ++ +
Sbjct: 52 LIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDI 111
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LY M PD++TFP ++K C + + +G +HG ++ G D++V ++L++L
Sbjct: 112 ISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNL 171
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G +D RK+FD M R+VVSWT MI G ++ G+L A
Sbjct: 172 YGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEA 212
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+ W+ +I T +G +A+ + M +PDKF ++ AC ++ K V
Sbjct: 286 IIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDS 345
Query: 104 LAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
A + R V + L+D+ KCG+++ +F+KM R ++S+ +++ GL+ G D
Sbjct: 346 YATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGD 405
Query: 163 AA 164
A
Sbjct: 406 QA 407
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 39/161 (24%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G+ D + L++L G D A VF + +V +W MI + G+ ++A
Sbjct: 153 ILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEA 212
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++LM P+ R++ + ++
Sbjct: 213 KRLFDLM------PE---------------------------------RNVASWNAIIGG 233
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+K GDV K FD+M ++VVS+TTMI G A +GD+ +A
Sbjct: 234 YMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSA 274
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A+ +F ++ + ++ +++ L+I G QA+ L+ M+ PD
Sbjct: 363 LIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPD 422
Query: 79 KFTFPFVIKACIASLAIEKG 98
F ++ AC + +++G
Sbjct: 423 DVAFTVILTACSRAGLVDEG 442
>gi|255568506|ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535524|gb|EEF37193.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 420
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+YG S + + LLD+ + G + AL +F + + +WN +I G A
Sbjct: 209 IKYGYSCNVYVGSALLDMYARSGHLEEALFIFDGLPSRNEVSWNALIAGCARKGDQELAF 268
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ +P +FT+ V+ AC + ++E+GK VH L +K+G FV +TL+ +Y
Sbjct: 269 SFFSKMLRENIQPTQFTYSIVLSACASIGSLEQGKWVHALLIKSGAKLVDFVGNTLLGMY 328
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G ++ RK+FD + R VVSW +M++G A G
Sbjct: 329 AKSGSIEDARKVFDGLVKRDVVSWNSMLAGYAQHG 363
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+D ++ +L++ + G A VF Q+ V TW +I + ALLL+ M
Sbjct: 114 HDLVIQNTILNMYAKCGNLGEARKVFDQMPVKDVVTWTALITGYSQHDRPKDALLLFPQM 173
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ GFRP+ FT ++KA S + G+ +H +K G+S +++V S L+D+Y + G +
Sbjct: 174 LTLGFRPNHFTLSSLLKASGVSPSDSNGRLLHAFCIKYGYSCNVYVGSALLDMYARSGHL 233
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +FD + R+ VSW +I+G A GD + A
Sbjct: 234 EEALFIFDGLPSRNEVSWNALIAGCARKGDQELA 267
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
+L+ +L G+ L L +L+ PD+ + + K C +++G+ VH +
Sbjct: 53 DLLRHSLDQSGTGLHVL---DLIDRASLEPDRTLYHILFKKCTLFNKLKEGQLVHAHLLN 109
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ F D+ +Q+T++++Y KCG++ RK+FD+M V+ VV+WT +I+G
Sbjct: 110 SRFKHDLVIQNTILNMYAKCGNLGEARKVFDQMPVKDVVTWTALITG 156
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDG 58
+++I G D + L+D+ YGK H A+ VF Q+ V WN MI + G
Sbjct: 231 EELINSGFLLDSFISSALVDM---YGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKG 287
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
S+ + L+ M G +P T +I C S + +GK VHG ++ D+F+ S
Sbjct: 288 DSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINS 347
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+LMDLY KCG V+ +F + VVSW MISG A G L A
Sbjct: 348 SLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEA 393
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR + +D + L+DL GK + A +F I V +WN+MI +G +AL
Sbjct: 335 IRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEAL 394
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M + PD TF V+ AC A+EKG+E+H L ++ + V L+D+Y
Sbjct: 395 GLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMY 454
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG VD +F + R +VSWT+MI+ + G
Sbjct: 455 AKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHG 489
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTID 57
QK++ GL ND L + L++L C Y DHA VF + P + WN ++ T +
Sbjct: 27 QKVVTLGLQNDIFLCKNLINLYLSCHLY---DHAKCVFDNMENPCEISLWNGLMAGYTKN 83
Query: 58 GSSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
++AL L+ ++ + +PD +T+P V+KAC GK +H VK G D+ V
Sbjct: 84 YMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVV 143
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+L+ +Y KC + +F++M + V W T+IS SG+ A
Sbjct: 144 GSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEA 191
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 85/157 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D ++ L+ + + + A+ +F+++ V WN +I G+ +A
Sbjct: 132 LVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + LM GF P+ T I +C L + +G E+H + +GF D F+ S L+D+
Sbjct: 192 LEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDM 251
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ ++F++M ++VV+W +MISG GD
Sbjct: 252 YGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGD 288
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II L N+++++ LLD+ + G D A VF + + +W MI A G + A
Sbjct: 435 IIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVA 494
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ M+ + +PD+ TF ++ AC + +++G
Sbjct: 495 LELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEG 529
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++AC+ S ++++GK +H V G D+F+ L++LYL C D + +FD M
Sbjct: 9 LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68
Query: 145 VVS-WTTMISG 154
+S W +++G
Sbjct: 69 EISLWNGLMAG 79
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FY K D A+ +F ++R +VF+W ++ G S ALL + M NG PD
Sbjct: 122 LVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPD 181
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F P V+KAC + I GK VHG +K GF +FV S+L+D+Y KCG ++ RK+FD
Sbjct: 182 NFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFD 241
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M ++VV+W +MI G +G
Sbjct: 242 SMVEKNVVTWNSMIVGYVQNG 262
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L +++ S G + A LVFS++ V TWNL+I + +AL + +LM
Sbjct: 317 DNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMR 376
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
R D T ++ A + I+ GKE H ++ D+ V ++++D+Y KC +D
Sbjct: 377 SENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERID 436
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
RK+FD R +V W T+++ A G
Sbjct: 437 DARKVFDSTTERDLVLWNTLLAAYAQVG 464
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 27 GKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ + A +FSQ++ P++ TW +I L G +A+L + M G RP +
Sbjct: 499 GQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASI 558
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+ AC ++ G+ +HG + F + V ++L+D+Y KCG +D +K+F M
Sbjct: 559 TSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSS 618
Query: 143 RSVVSWTTMISGLAASGD 160
+ + + MIS A G
Sbjct: 619 KELPIYNAMISAYALHGQ 636
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + L+D+ G + A VF + +V TWN MI +G + +A
Sbjct: 208 VLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEA 267
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M G P + T + A A+ +GK+ H +A+ D + S++++
Sbjct: 268 IDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINF 327
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y K G ++ +F +M + VV+W +IS
Sbjct: 328 YSKVGLIEDAELVFSRMLEKDVVTWNLLIS 357
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG- 109
I +L DG +++ L + M F+ + +++ C+ A+ G+++H +K G
Sbjct: 51 ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 110
Query: 110 -FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
F+++ +V++ L+ Y KC + ++F ++RVR+V SW ++
Sbjct: 111 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIV 154
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D A VF + + +N MI A + G +++AL L+ + G PD
Sbjct: 596 LVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPD 655
Query: 79 KFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF ++ AC + + +G + + K + M ++ L +CG++D ++
Sbjct: 656 SITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLI 715
Query: 138 DKM 140
M
Sbjct: 716 LTM 718
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R + D + L+D G A +F I V +WN+MI + G+ +QA
Sbjct: 334 ILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQA 393
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y+ M + +PD TF + AC A++KG+E+H + + V L+D+
Sbjct: 394 LHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDM 453
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGDVD RK+F ++ R +VSWT+MI + G A
Sbjct: 454 YAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEA 494
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + Y K D A+ +F + V WN +I DG + AL ++ M GF P+
Sbjct: 147 LMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPN 206
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF V+ +C L +E+GKEVH ++ D FV S L+D+Y KCG ++ +++F+
Sbjct: 207 SVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFE 266
Query: 139 KMRVRSVVSWTTMISGLAASGD 160
K+ ++ ++W MI+G + GD
Sbjct: 267 KIPRKNAITWNAMITGYSLKGD 288
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTID 57
Q+I G ++ +L + L+ C Y + LVF CP V WN ++ A T +
Sbjct: 27 QRIFSCGFQSNIVLSKSLIGFYFSCHDYASAE---LVFQTNDCPLDVSLWNALLSAYTNN 83
Query: 58 GSSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
++AL L++ + CN + RPD +T+P V+KAC + G+ +H +K G D+FV
Sbjct: 84 FRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFV 143
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+LM++Y KC K+FD+ R V W +IS G + A
Sbjct: 144 GSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMA 191
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ G + A VF +I + TWN MI ++ G S + L M
Sbjct: 241 DAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMN 300
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G +P T +I A S+ + GK +HG ++ D+F+ +L+D Y KCG V
Sbjct: 301 DEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVS 360
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+F + VVSW MISG G+
Sbjct: 361 SAETIFRTISKNEVVSWNVMISGHVMVGN 389
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II + L +++++ LLD+ + G D A +F Q+ + +W MI A G + +A
Sbjct: 435 IINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEA 494
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L++ M R D TF V+ AC + +++G
Sbjct: 495 LRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEG 529
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ G +D + L+ + + G VF ++ + WN MI L G+ +A
Sbjct: 371 ILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEA 430
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+Y+ M G P+K T+ ++ AC+ A+ G+E+H VK GF D+ VQ+ L+ +
Sbjct: 431 SEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISM 490
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG + R +F+KM + ++SWT MI GLA SG
Sbjct: 491 YARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSG 526
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 81/158 (51%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q++I GL+ D + L+++ S G A VF ++ + +N MI
Sbjct: 571 QQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGK 630
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L++ + G +PDK T+ ++ AC S ++E KE+H L +K G+ D + + L+
Sbjct: 631 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALV 690
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +FDKM R+V+SW +I G A G
Sbjct: 691 STYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHG 728
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 85/155 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G D + L+ + + G A L+F+++ + +W MI L G +
Sbjct: 471 RVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAE 530
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M G +P++ T+ ++ AC + A++ G+ +H ++AG + D V +TL++
Sbjct: 531 ALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVN 590
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+Y CG V R++FD+M R +V++ MI G AA
Sbjct: 591 MYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAA 625
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 2/165 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGS 59
+ II++ DQ V L+++ G + A V++++ V +WN M+ G
Sbjct: 165 EHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGY 224
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL L M +G + T ++ +C + A+E G+E+H A+KA D+ V +
Sbjct: 225 IEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANC 284
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++Y KCG + R++FDKM +SVVSWT +I G A G + A
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIA 329
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+L++ + G A VF ++ V +W ++I G S A ++ M G P+
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T+ V+ A A++ GK VH + AG D+ V + L+ +Y KCG R++F+
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFE 404
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
K+ R +++W TMI GLA G+ + A
Sbjct: 405 KLVNRDLIAWNTMIGGLAEGGNWEEA 430
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM 114
TI G +A+ + + G R + + ++K CI + G+EVH ++ D
Sbjct: 118 TITGKD-RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQ 176
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGDLDAA 164
+ + L+++Y++CG ++ R++++K+ R+V SW M+ G G ++ A
Sbjct: 177 YTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEA 228
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 12/168 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +D L L+ + G ALLVF ++ +V +WN +I G
Sbjct: 674 VLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDV 733
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST---- 119
L L+ M G +PD TF ++ AC + +E+G+ SRD + T
Sbjct: 734 LQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYF-----CSMSRDFGITPTIEHY 788
Query: 120 --LMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++DL + G +D + M ++ W ++ G++ A
Sbjct: 789 GCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVA 836
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G+ ++ L LL + + G A VF IR ++ +W MI A +L+A
Sbjct: 73 ILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEA 132
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
Y M G +PDK TF ++ A ++ G++VH V+AG + V ++L+ +
Sbjct: 133 FKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGM 192
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+ R +FD++ ++VV+WT +I+G A G +D A
Sbjct: 193 YAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVA 233
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 87/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ GL + + L+ + + G A ++F ++ +V TW L+I G
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L M P+K TF +++ C A+E GK+VH +++G+ R+++V ++L+
Sbjct: 233 ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLIT 292
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG ++ RK+F + R VV+WT M++G A G D A
Sbjct: 293 MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEA 334
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G + +V L+ + G + A +FS + V TW M+ G +A
Sbjct: 275 IIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEA 334
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G +PDK TF V+ +C + +++GK +H V AG++ D+++QS L+ +
Sbjct: 335 INLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSM 394
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG +D +F++M R+VV+WT +I+G A
Sbjct: 395 YAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQ 429
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+ L G +AL + N MI G R F +++ C ++E+G+EVH +K+G
Sbjct: 19 VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG-LAASGDLDA 163
+ ++++TL+ +Y KCG + R++FD +R R++VSWT MI +A + +L+A
Sbjct: 79 QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEA 132
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 3/164 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID-GSS 60
Q+++ G + D L L+ + + G D A LVF+Q+ +V W +I G
Sbjct: 374 QQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRC 433
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQST 119
+AL ++ M G +PDK TF V+ AC +E+G K + + G + S
Sbjct: 434 REALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSC 493
Query: 120 LMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLD 162
+DL + G ++ + M + W ++S D++
Sbjct: 494 FVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVE 537
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I YGL D ++ K + + + D A +VF I P F WN+MIR DG L
Sbjct: 501 NIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLS 560
Query: 63 ALLLYNLMICNGFRPD-------KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+L LY+ M+ G +PD + + V+ AC A+ KG+ H ++ GF D+
Sbjct: 561 SLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDIL 620
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V + +MD+Y KCG +D R +FD+ + +V W+ MI+ G
Sbjct: 621 VATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHG 664
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G+ +D KL L + A VF + P+V WN +R+ + +
Sbjct: 26 QVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEE 85
Query: 63 ALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTL 120
L L++LMIC G PD FT P +KAC +E GK +HG A K DMFV S L
Sbjct: 86 TLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSAL 145
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++LY KCG + K+F++ + V WT+M++G + D + A
Sbjct: 146 VELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK H + V+ V +W ++ +G + +++ ++ M+ +G +PD ++
Sbjct: 291 GKKIHKIAVWKD-----VVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKIL 345
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A ++ +HG V++GF+ ++FV ++L++LY KCG + K+F M VR VV
Sbjct: 346 AASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVV 405
Query: 147 SWTTMISGLAASG 159
W++MI+ G
Sbjct: 406 IWSSMIAAYGIHG 418
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G D L+ ++D+ S G D A +F + + W+ MI + I G +A
Sbjct: 610 VIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA 669
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ L++ M+ G RP TF V+ AC S +E+GK L + +R + + ++D
Sbjct: 670 IDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVD 729
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G + + + M V S W +++ +LD A
Sbjct: 730 LLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 772
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D LV LL+L + G A +FS++ V +W+ MI + ++ +AL L++ MI
Sbjct: 205 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI 264
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
F P+ T ++AC S +E+GK++H +AV
Sbjct: 265 EKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAV 299
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
++H K G D F + L LY KC + RK+FD+ +V W + +
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTL 74
>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G+TD A+ +F ++ + TWN MI L QAL L+ ++ +
Sbjct: 328 GETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSEL 387
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF ++ C A +A+E+G+++H +K G D+ V S L+++Y KCG ++ K
Sbjct: 388 KPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATK 447
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
F +M R+ V+WT+MISG + G
Sbjct: 448 AFVEMPTRTPVTWTSMISGYSQHG 471
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-A 63
I+YG + L L G + L F +V TW MI + D + L
Sbjct: 204 IKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLG 263
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ G P++FT V+ C A L + GK+V K G ++ V+++ M L
Sbjct: 264 LSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYL 323
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
YL+ G+ D ++F++M S+++W MISG A
Sbjct: 324 YLRKGETDEAMRLFEEMDSSSIITWNAMISGYA 356
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + D + L+++ + A +F + +V TW +I T++ A
Sbjct: 102 MVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALA 161
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M+ G P +T ++ AC A+ I+ G++VHG ++K G + ++L L
Sbjct: 162 LEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRL 221
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y K GD++ G + F ++V++WTTMIS A
Sbjct: 222 YCKSGDLESGLRAFKGTPDKNVITWTTMISSCA 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ C+ + + + +HG VK G + DMFV ++L+++Y++C R++FD M ++
Sbjct: 82 LLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKN 141
Query: 145 VVSWTTMISG 154
VV+WT +I+G
Sbjct: 142 VVTWTALITG 151
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I+ G +D ++ L+++ + G + A F ++ TW MI + G S
Sbjct: 416 NTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQD 475
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
A+ L+ M+ +G RP++ TF ++ AC + +E+ + + ++ + + V +
Sbjct: 476 AIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDM-MRNEYHIEPLVDHYGCM 534
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+D++++ G +D + + W+++++G + G+++ A
Sbjct: 535 VDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 579
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LL 66
G + ++ L+D+ D A+LVF ++ P W +I A T + +AL
Sbjct: 192 GFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFF 251
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
Y++ +G PD FTF V+ AC +++GKEVH + +G S ++FV+S+L+D+Y K
Sbjct: 252 YSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGK 311
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
C V+ + +FD+M V+++VSWT ++ G +GD ++
Sbjct: 312 CRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFES 348
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 10/160 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
K+I GLS + + L+D+ YGK + + VF ++ ++ +W ++ +G
Sbjct: 289 KVITSGLSGNVFVESSLVDM---YGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGD 345
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ ++ G + D ++F V++AC A+ +GKEVH VK RD+ +S
Sbjct: 346 FESVIRIFR----EGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESA 401
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+DLY KCG +D ++F +M VR++++W +MI G A +G
Sbjct: 402 LVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNG 441
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 1/161 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT-DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ GL D+ + LL L G A VF + + +W MI ++
Sbjct: 87 IKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKS 146
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ G P+ FT VIKAC + GK HG+ + GF + + + L+D+
Sbjct: 147 LELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDM 206
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y + VD +F ++ + WT++IS + D A
Sbjct: 207 YGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKA 247
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
GS +A+ + N + F + +++ C +++ G + H A+K+G D FV
Sbjct: 39 GSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVG 98
Query: 118 STLMDLYLKCG-DVDGGRKMFDKMRVRSVVSWTTMISG 154
++L+ LY K G ++ R++FD + + ++SWT+MI+G
Sbjct: 99 NSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITG 136
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+DL + G D A +F ++ ++ TWN MI +G + L++ MI
Sbjct: 395 DVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMI 454
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-----LAVKAGFSRDMFVQSTLMDLYLK 126
G RPD +F V+ AC + +++GK+ +K G + ++DL +
Sbjct: 455 EEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEH----YNCMIDLLGR 510
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAAS 158
G ++ + + R S WT ++ AAS
Sbjct: 511 AGLLEEAENLIENANCRDEPSLWTVLLGACAAS 543
>gi|302789766|ref|XP_002976651.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
gi|300155689|gb|EFJ22320.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
Length = 341
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 77/158 (48%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G +D ++ L+ + S G D A VF ++ W MI A G
Sbjct: 34 SHIVDCGCGSDIVVATGLIGMYSRCGSVDRAREVFDRMSYRDTVAWTAMIAAYAHTGHPR 93
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
QA+ L+ M RPD FT+ VI AC A+ G VH V+ GF D VQ++L+
Sbjct: 94 QAMELFKAMDTWDVRPDGFTYASVINACTGMGALADGMVVHREIVRDGFDGDPVVQNSLV 153
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y KCG + R +FD M R V +WT + SG A G
Sbjct: 154 DMYSKCGSLGEARAVFDDMVKRDVATWTALFSGYAKHG 191
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
RP F F ++ AC+ + G +H V G D+ V + L+ +Y +CG VD R+
Sbjct: 7 RPTSFFFSGILAACLEPGDLPTGMRIHSHIVDCGCGSDIVVATGLIGMYSRCGSVDRARE 66
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD+M R V+WT MI+ A +G
Sbjct: 67 VFDRMSYRDTVAWTAMIAAYAHTG 90
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+R G D ++ L+D+ S G A VF + V TW + G +
Sbjct: 135 REIVRDGFDGDPVVQNSLVDMYSKCGSLGEARAVFDDMVKRDVATWTALFSGYAKHGFNN 194
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS--T 119
+AL + M D+ F V++AC +++G++ + ++++ F V+
Sbjct: 195 EALETFWCMALESMALDEIIFTTVLQACSHLGLVDEGRD-YFVSMRRDFGLAPGVEHYVG 253
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSV-VSWTTMISGLAASGDLDAA 164
++D+ + G + ++ M V+WTT++ D + A
Sbjct: 254 MVDVLGRAGRLKEAEELLGGMPYEPTPVAWTTILGACKIHSDTERA 299
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ L + + +KL+ S + A+ VF+QI+ P V +N +IRA + L
Sbjct: 39 QVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLL 98
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M +G D FT+PF++KAC + + + +H K GF D+FV ++L+D
Sbjct: 99 AFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLID 158
Query: 123 LYLKCG--DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V RK+F+ M R VSW +MI GL G+L A
Sbjct: 159 SYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEA 202
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A ++F ++ ++ W +MI G + A+ LYN M G + D T ++
Sbjct: 259 GDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISIL 318
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S + GK VH + F V + L+D+Y KCG ++ +F M + VV
Sbjct: 319 SACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVV 378
Query: 147 SWTTMISGLAASGDLDAA 164
SW +I GLA G + A
Sbjct: 379 SWNAIIQGLAMHGHGEKA 396
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD +T++D Y+K G+++ ++F+KM R+VVSW+TM+ G + +GD+D A
Sbjct: 211 ERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMA 264
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G ++AL +F + V +WN +I+ L + G +AL L++ M GF PD
Sbjct: 352 LIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPD 411
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
K TF V+ AC + +++G H + G ++ ++DL + G + ++
Sbjct: 412 KVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLV 471
Query: 138 DKMRVR-SVVSWTTMI 152
M + + + W T++
Sbjct: 472 HSMPLEPNAIIWGTLL 487
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF------VIKA 88
VF + +WN MI L G +A L++ M P++ T + +KA
Sbjct: 174 VFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEM------PERDTVSWNTILDGYVKA 227
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
+ A E +++ +R++ ST++ Y K GD+D R +FDKM V+++V W
Sbjct: 228 GEMNAAFELFEKMP--------ARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPW 279
Query: 149 TTMISGLAASG 159
T MISG A G
Sbjct: 280 TIMISGYAEKG 290
>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 878
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLC----SFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTI 56
+I++GL + LDLC S Y KTD +A +F ++ VF W +MI A T
Sbjct: 48 VIKFGLLEN-------LDLCNNLLSLYLKTDGIWNARKLFDEMPQRTVFAWTVMISAFTK 100
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
AL L+ M+ +G P++FTF VI++C + G VHG +K GF + V
Sbjct: 101 SQEFASALSLFEEMMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTGFEGNSVV 160
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
S+L DLY KCG + R++F ++ +SWT MIS L +
Sbjct: 161 GSSLTDLYSKCGKLKEARELFSSLQNADTISWTMMISSLVGA 202
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + + ++ L+D + GK D+A V + T+ ++ G A
Sbjct: 452 LLRRHVDGEMIVGNSLVDAYASSGKVDYAWNVTRSMDMRDNITYTSLVTRFNELGKHEMA 511
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + N M +G R D+ + P I A A E GK +H +VK+GFS + V ++L+D+
Sbjct: 512 LSVINHMYGDGIRMDQLSLPGFISASANLGAHETGKHLHCYSVKSGFSGAVSVLNSLVDM 571
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ +K+F+++ + VVSW ++SGLA+ G + +A
Sbjct: 572 YSKCGSLEDAKKVFEEIAMPDVVSWNGLVSGLASIGRISSA 612
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G+ + +L L+ S + + A+ V + VF W ++ + + +A
Sbjct: 249 IIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSVVSGFVRNLRAKEA 308
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G P+ FT+ ++ C A +++ GK++H +K GF V + L+ +
Sbjct: 309 VGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGFEDSTDVGNALVSM 368
Query: 124 YLKC--GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KC +V+ R +F M +VVSWTT+I GL G
Sbjct: 369 YMKCSASEVEASR-VFGAMISPNVVSWTTLILGLVDHG 405
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + ++ L DL S GK A +FS ++ +W +MI +L +A
Sbjct: 149 VLKTGFEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNADTISWTMMISSLVGARKWSEA 208
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y+ MI G P++FTF ++ A + L +E GK +H + G ++ ++++L+
Sbjct: 209 LRFYSEMIKAGVPPNEFTFVKLLGAS-SFLGLEFGKTIHSSIIVRGIPLNVVLKTSLVYF 267
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y ++ ++ + + V WT+++SG
Sbjct: 268 YSHFSIMEDAVRVLNSTGEQDVFLWTSVVSGF 299
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G S ++ L+D+ S G + A VF +I P V +WN ++ L G AL
Sbjct: 554 VKSGFSGAVSVLNSLVDMYSKCGSLEDAKKVFEEIAMPDVVSWNGLVSGLASIGRISSAL 613
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
+ M G PD TF ++ AC E G E
Sbjct: 614 SAFEEMRMKGTEPDSVTFLILLSACSKGRLTEMGLE 649
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF + P+V +W +I L G L M+ P+ T V++AC
Sbjct: 382 VFGAMISPNVVSWTTLILGLVDHGFEQDCFGLLMEMVKREVEPNFVTLSGVLRACSKLKY 441
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ E+HG ++ +M V ++L+D Y G VD + M +R +++T++++
Sbjct: 442 LRLVLEIHGYLLRRHVDGEMIVGNSLVDAYASSGKVDYAWNVTRSMDMRDNITYTSLVTR 501
Query: 155 LAASGDLDAA 164
G + A
Sbjct: 502 FNELGKHEMA 511
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
G +H +K G ++ + + L+ LYLK + RK+FD+M R+V +WT MIS
Sbjct: 41 GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMPQRTVFAWTVMISAFTK 100
Query: 158 SGDLDAA 164
S + +A
Sbjct: 101 SQEFASA 107
>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 594
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G+TD A+ +F ++ + TWN MI L QAL L+ ++ +
Sbjct: 146 GETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSEL 205
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF ++ C A +A+E+G+++H +K G D+ V S L+++Y KCG ++ K
Sbjct: 206 KPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATK 265
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
F +M R+ V+WT+MISG + G
Sbjct: 266 AFVEMPTRTPVTWTSMISGYSQHG 289
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-ALLLYNLMICNGFRP 77
LC Y K+ + L F +V TW MI + D + L L L+ M+ G P
Sbjct: 36 LCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMP 95
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++FT V+ C A L + GK+V K G ++ V+++ M LYL+ G+ D ++F
Sbjct: 96 NEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLF 155
Query: 138 DKMRVRSVVSWTTMISGLA 156
++M S+++W MISG A
Sbjct: 156 EEMDSSSIITWNAMISGYA 174
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ AC A+ I+ G++VHG ++K G + ++L LY K GD++ G + F ++
Sbjct: 1 MLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKN 60
Query: 145 VVSWTTMISGLA 156
V++WTTMIS A
Sbjct: 61 VITWTTMISSCA 72
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D ++ L+++ + G + A F ++ TW MI + G S A+
Sbjct: 236 IKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAI 295
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMD 122
L+ M+ +G RP++ TF ++ AC + +E+ + + ++ + + V ++D
Sbjct: 296 QLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDM-MRNEYHIEPLVDHYGCMVD 354
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++++ G +D + + W+++++G + G+++ A
Sbjct: 355 MFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA 397
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 18 KLLDLCSF-YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76
KLL+L + G A+L FSQIR P WN +IR + A Y MI +
Sbjct: 43 KLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRK 102
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D T FV+KAC LA + ++H V+ GF D + +TL+D+Y K G++D K+
Sbjct: 103 VDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKV 162
Query: 137 FDKMRVRSVVSWTTMISGLA 156
FD+M R + SW +ISG A
Sbjct: 163 FDEMVKRDIASWNALISGFA 182
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G D LL LLD+ + G+ D A VF ++ + +WN +I +A
Sbjct: 131 IVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEA 190
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +GF+P++ + + AC ++G+++HG F + V + ++D+
Sbjct: 191 LSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDM 250
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGD 160
Y KCG VD +F+ M R +V+W TMI A G+
Sbjct: 251 YAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGE 288
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
++D+ + G D A LVF + C + TWN MI A + G +AL L+ M +G P
Sbjct: 247 VIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSP 306
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D ++ V+ AC +E+G + G ++ +++DL + G + +
Sbjct: 307 DDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIV 366
Query: 138 DKM-RVRSVVSWTTMISGLAASGDLDAA 164
+ M V +V W T++ +++ A
Sbjct: 367 NSMPTVPDIVLWQTLLGASRTHRNVEIA 394
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G D + +LDL YGK A LVF ++ +WN +I AL +
Sbjct: 365 IKSGFDVDVCVRNAILDL---YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYE 421
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ N M+ G PD FT+ V+KAC ++E G VHG A+K+G D FV ST++
Sbjct: 422 DTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVV 481
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D+Y KCG + +K+ D++ + +VSW ++ISG +
Sbjct: 482 DMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFS 516
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I+ GL D + ++D+ G A + +I + +WN +I +++ S +
Sbjct: 464 KAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEE 523
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M+ G +PD FT+ V+ C IE GK++HG +K D ++ STL+D
Sbjct: 524 AQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVD 583
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG++ MF+K + VSW MI G A G
Sbjct: 584 MYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHG 620
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G T A +F + P V +WN ++ G ++ L M G PD+ T ++
Sbjct: 84 GDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLL 143
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC + G ++H +AVK G D+ S L+D+Y KC ++ + F M R+ V
Sbjct: 144 KACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSV 203
Query: 147 SWTTMISG 154
SW I+G
Sbjct: 204 SWGAAIAG 211
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ S D+++ ++D+ Y K D A F + V N M+ L G
Sbjct: 264 IKNKFSADRVVGTAIVDV---YAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGA 320
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L+ M +G D + V AC +G +VH LA+K+GF D+ V++ ++
Sbjct: 321 EALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAIL 380
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
DLY KC + +F +M R VSW +I+ L
Sbjct: 381 DLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAAL 414
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 81 TFPFVIKACIAS--LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + + C + A+ G+ H + +GF FV + L+ +Y +CG R +FD
Sbjct: 4 TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R VSW TM++ A +GD AA
Sbjct: 64 VMPHRDTVSWNTMLTAYAHAGDTGAA 89
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL D VR L YGK + AL F + + +W I +
Sbjct: 163 VKTGLEMD---VRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYT 219
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L L+ M G + + V ++C A + +++H A+K FS D V + ++
Sbjct: 220 RGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIV 279
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K + R+ F + +V + M+ GL +G
Sbjct: 280 DVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + D+ + L+D+ + G +LL+F + + +WN MI + G +
Sbjct: 565 QIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFE 624
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL ++ M P+ TF V++AC
Sbjct: 625 ALEMFERMQQANVVPNHATFVAVLRAC 651
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCG 128
M+ +GF P F + C+ + G H V RD +T++ Y G
Sbjct: 30 MLVSGFMPTTF-----VSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHAG 84
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D +F M VVSW ++SG G
Sbjct: 85 DTGAAASLFGAMPDPDVVSWNALLSGYCQRG 115
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G D++++ ++++ G + A VF I+ P+VF+W ++I A +G ++
Sbjct: 143 IMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEV 202
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
L L + M G +PD +TF V+ AC A A+E+ K +H + + G RD V + L++
Sbjct: 203 LRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALIN 262
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG ++ +F ++ + +VSW++MI+ A SG +A
Sbjct: 263 LYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSA 304
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L++L G + A VF QI + +W+ MI A G + A+ L
Sbjct: 249 GLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLL 308
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
LM G RP+ TF V++A + A + GKE+H V+AG+S D+ + S L+ +Y
Sbjct: 309 MLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNW 368
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
G V+ R +F+ R R VVSW++MI+G
Sbjct: 369 GWVETARSIFESSRERDVVSWSSMIAG 395
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF-PFV 85
G TD AL VF +++ +V W +I A T G A++L+ M+ +G PD+ TF +
Sbjct: 64 GCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSIL 123
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+K +++GK VH ++ G+ D V + ++++Y KCGDV+ +FD ++ +V
Sbjct: 124 LKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNV 183
Query: 146 VSWTTMISGLAASG 159
SWT +I+ A +G
Sbjct: 184 FSWTIIIAAYAQNG 197
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 82/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G S+D L L+ + +G + A +F R V +W+ MI + + S +
Sbjct: 345 RIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPAR 404
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M +G +P+ TF I AC A+ +G ++H G +D+ V + L++
Sbjct: 405 ALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVN 464
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCG ++ +F M+ +++++WT++ +G
Sbjct: 465 LYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNG 501
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDM-----FVQSTLMDLYLKCGDVDGGRKMFDK 139
++ AC A+ +GK VHGL ++ +D +++ ++ +YL+CG D +FD+
Sbjct: 16 ILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDR 75
Query: 140 MRVRSVVSWTTMISGLAASG 159
M+ ++VV+WT++IS +G
Sbjct: 76 MKDQNVVAWTSLISAFTFAG 95
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L++L G+ + A VF ++ ++ TW + A +G ++L L
Sbjct: 451 GLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLL 510
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLK 126
+ M G +PD F ++ +C + + KG + L + G + + ++D+ +
Sbjct: 511 HGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGR 570
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
G ++ ++ + M+ S ++W +++ A D
Sbjct: 571 AGKLEAAEQLINTMKFESSLAWMMLLTACKAHND 604
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FY K D A+ +F ++R +VF+W ++ G S ALL + M NG PD
Sbjct: 1217 LVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPD 1276
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F P V+KAC + I GK VHG +K GF +FV S+L+D+Y KCG ++ RK+FD
Sbjct: 1277 NFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFD 1336
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M ++VV+W +MI G +G
Sbjct: 1337 SMVEKNVVTWNSMIVGYVQNG 1357
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L +++ S G + A LVFS++ V TWNL+I + +AL + +LM
Sbjct: 1412 DNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMR 1471
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
R D T ++ A + I+ GKE H ++ D+ V ++++D+Y KC +D
Sbjct: 1472 SENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERID 1531
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
RK+FD R +V W T+++ A G
Sbjct: 1532 DARKVFDSTTERDLVLWNTLLAAYAQVG 1559
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 27 GKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ + A +FSQ++ P++ TW +I L G +A+L + M G RP +
Sbjct: 1594 GQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASI 1653
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+ AC ++ G+ +HG + F + V ++L+D+Y KCG +D +K+F M
Sbjct: 1654 TSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSS 1713
Query: 143 RSVVSWTTMISGLAASGD 160
+ + + MIS A G
Sbjct: 1714 KELPIYNAMISAYALHGQ 1731
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + L+D+ G + A VF + +V TWN MI +G + +A
Sbjct: 1303 VLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEA 1362
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M G P + T + A A+ +GK+ H +A+ D + S++++
Sbjct: 1363 IDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINF 1422
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y K G ++ +F +M + VV+W +IS
Sbjct: 1423 YSKVGLIEDAELVFSRMLEKDVVTWNLLIS 1452
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG- 109
I +L DG +++ L + M F+ + +++ C+ A+ G+++H +K G
Sbjct: 1146 ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 1205
Query: 110 -FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
F+++ +V++ L+ Y KC + ++F ++RVR+V SW ++
Sbjct: 1206 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIV 1249
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D A VF + + +N MI A + G +++AL L+ + G PD
Sbjct: 1691 LVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPD 1750
Query: 79 KFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF ++ AC + + +G + + K + M ++ L +CG++D ++
Sbjct: 1751 SITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLI 1810
Query: 138 DKM 140
M
Sbjct: 1811 LTM 1813
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 86/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++YGL D + L+D+ + + A L+F + + TW +MI G++ ++
Sbjct: 1207 VLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKES 1266
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L++ + GF PDK ++ AC A+ K + VH + FS D+ + + ++D+
Sbjct: 1267 LVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDM 1326
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGDVD R++FD M ++V+SW+ MI+ G
Sbjct: 1327 YAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHG 1362
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 84/152 (55%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L N+ + KLL + + A +F ++ + +W++MI G +Q +
Sbjct: 1111 LYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFK 1170
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+I NG +PD +T PFVIKAC ++A++ G+ +H + +K G D FV + L+D+Y KC
Sbjct: 1171 ELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCK 1230
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++ + +FD M + +V+WT MI G A G+
Sbjct: 1231 VIEDAKLLFDVMPSKDLVTWTVMIGGYAECGN 1262
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R S D +L ++D+ + G D A +F + +V +W+ MI A G +AL
Sbjct: 1310 RNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALE 1369
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLY 124
L+ +M+ +G P+ TF ++ AC + +E G + L ++ G D+ + ++DL
Sbjct: 1370 LFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLL 1429
Query: 125 LKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
+ G + + + M V + W++++ +D A
Sbjct: 1430 GRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLA 1470
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 36/198 (18%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II + LS+ L+ +L+ S +H+L VF+ + ++FT+N +IR LT +
Sbjct: 103 QIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFN 162
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ + LM+ +G +PD+ T+PFV+K+ + E G +H + ++ G D FV+ +L+D
Sbjct: 163 AIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVD 222
Query: 123 LYL------------------------------------KCGDVDGGRKMFDKMRVRSVV 146
+Y+ K G + K+F M + V
Sbjct: 223 MYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENV 282
Query: 147 SWTTMISGLAASGDLDAA 164
SW+T+I G A +GD+D A
Sbjct: 283 SWSTLIDGFAKNGDMDRA 300
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 75/146 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D + G D A+ +F Q+ +V +W M+ + +G S +AL +++ M+ G RP+
Sbjct: 287 LIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPN 346
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT + AC +E G +H G + + L+D+Y KCG+++ ++F
Sbjct: 347 AFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFG 406
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ +S+ +WT MI G A G + A
Sbjct: 407 ETEQKSIRTWTVMIWGWAIHGHSEQA 432
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+IK C + +++K ++ KA ++ STL+D + K GD+D ++FD+M ++
Sbjct: 256 LIKGCCKAGSMKKAVKL----FKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKN 311
Query: 145 VVSWTTMISGLAASGDLDAA 164
VVSWTTM+ G + +GD + A
Sbjct: 312 VVSWTTMVDGFSRNGDSEKA 331
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + L L+D+ + G + A VF + + TW +MI I G S QA+ +
Sbjct: 377 GLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACF 436
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
M+ G +PD+ F ++ AC+ S ++ G
Sbjct: 437 KQMMFAGIKPDEVVFLALLTACMHSGQVDIG 467
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + +GK DHAL +F +++ V +W MI T +
Sbjct: 463 QVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTE 522
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M G + D F I AC A+++G+++H + +G+S D+ + + L+
Sbjct: 523 ALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVS 582
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY +CG V FD++ + VSW +++SG A SG + A
Sbjct: 583 LYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEA 624
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 15/150 (10%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+++D ++ LLDL Y K S I+ H F L L S Q
Sbjct: 379 IKAGMTSDIVVEGSLLDL---YVKC-------SDIKTAHEFF--LCYGQLDNLNKSFQ-- 424
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M G P++FT+P ++K C A + G+++H +K GF +++V S L+D+Y
Sbjct: 425 -IFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMY 483
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G +D K+F +++ VVSWT MI+G
Sbjct: 484 AKHGKLDHALKIFRRLKENDVVSWTAMIAG 513
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I G + + L+DL G A VF ++ +W MI L+ +G +
Sbjct: 189 KTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEE 248
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+LL+ C V+ AC E GK++HGL +K GFS + +V + L+
Sbjct: 249 AMLLF----CQ----------IVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVT 294
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY + G++ ++F M R VS+ ++ISGLA G ++ A
Sbjct: 295 LYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G S++ + L+ L S G A +F + ++N +I L G +A
Sbjct: 277 VLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + +PD T ++ AC + A+ GK+ H A+KAG + D+ V+ +L+DL
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDL 396
Query: 124 YLKCGDVDGGRKMF 137
Y+KC D+ + F
Sbjct: 397 YVKCSDIKTAHEFF 410
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S+D + L+ L + GK A F QI +WN ++ G +AL ++
Sbjct: 569 GYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIF 628
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G + FTF + A + GK++HG+ K G+ + V + L+ LY KC
Sbjct: 629 AQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKC 688
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D +SW +MI+G + G
Sbjct: 689 GTIDD-------------ISWNSMITGYSQHG 707
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL+D +G + A+ VF ++ + WN + + + L+ M+
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF 161
Query: 78 DKFTFPFVIKACIA-SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D+ F V++ C +++ +++H + +GF F+ + L+DLY K G + +K+
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F+ ++ R VSW MISGL+ +G + A
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEA 249
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P +F WN +IRA + +L L+ L+ + PD FT+PFV+KAC S ++ G +
Sbjct: 61 PPLFAWNTLIRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTL 120
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD- 160
H L +K GF V + L+++Y +C V R +FD+M R VVSW+++I+ AS
Sbjct: 121 HSLTLKTGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYVASNSP 180
Query: 161 LDA 163
LDA
Sbjct: 181 LDA 183
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +VF ++ V +W+ +I A S L A ++ M +P+ T ++ AC
Sbjct: 152 ARMVFDEMTDRDVVSWSSLIAAYVASNSPLDAFYVFREMGMENEQPNSVTLVSLLSACTK 211
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+L + G+ +H G D+ + + L ++Y KCG++D +F+ M +++ S T M
Sbjct: 212 TLNLRVGESIHSYVTSNGIEMDVALGTALFEMYAKCGEIDKALLVFNSMGDKNLQSCTIM 271
Query: 152 ISGLAASG 159
IS LA G
Sbjct: 272 ISALADHG 279
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ G+ D L L ++ + G+ D ALLVF+ + ++ + +MI AL G
Sbjct: 225 VTSNGIEMDVALGTALFEMYAKCGEIDKALLVFNSMGDKNLQSCTIMISALADHGREKDV 284
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ L+ M G R D +F ++ AC +++GK
Sbjct: 285 ISLFTQMEDGGLRLDSLSFAVILSACSHMGLVDEGK 320
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
++ L +F++I+ P + +N++I+ + S A+ L++ ++ + F PD FT P VIK C
Sbjct: 59 EYVLSIFNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQLL-HEFNPDGFTLPCVIKGC 117
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
A ++GK++HGL +K GF + FV S+L+++Y KC D+D +K+F M + +VSW
Sbjct: 118 ARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWN 177
Query: 150 TMISGLAASGDLD 162
++I G G ++
Sbjct: 178 SLIDGYVKCGQVE 190
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ ++ +WN M+ ++ +AL L+ M+ F P+ T A +
Sbjct: 257 LFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVSGLAS 316
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ GK +H VK GF D + ++L+++Y KCG+++ +F + + + WT +I G
Sbjct: 317 LSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITKKKLGHWTAIIVG 376
Query: 155 LAASGDLDAA 164
L G D A
Sbjct: 377 LGMHGMADNA 386
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
RD+F + L+D + KCG VD R++FDKM R++VSW MI+G +GD
Sbjct: 201 ERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMKAGDF 251
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D +L L+++ S G + AL VF I + W +I L + G + A
Sbjct: 327 MVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNA 386
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
L ++ M G RP TF V+ AC + +E G++
Sbjct: 387 LEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDGRK 423
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++ + L+++ S D A VF + + +WN +I G
Sbjct: 133 VLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELG 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M D F++ +I ++ +E+ SR++ + +++
Sbjct: 193 MKLFEEMP----ERDLFSWTVLIDGFSKCGKVDVARELFDKMP----SRNLVSWNAMING 244
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y+K GD ++FDKM ++++SW +M++G
Sbjct: 245 YMKAGDFVLASELFDKMPEKNLISWNSMVAG 275
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF-YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I +G S Q KL+ C+ +A +F + P+VF + MI A
Sbjct: 66 LISHGHSQTQFFAFKLVRFCNLTLADLCYARYIFDNLTSPNVFLYTAMITAYASYPDPKA 125
Query: 63 ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A LLY M+ G RP+ F +P V+++C L K VH +K+GF VQ+ ++
Sbjct: 126 AFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIV 185
Query: 122 DLYLK-CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D Y + D+ R+MFD+M R+VVSWT MISG A G+ D+A
Sbjct: 186 DSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGYARLGNFDSA 229
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF---------RP 77
G D A+ +F + V WN +I +G +A+ L+ M+ +P
Sbjct: 224 GNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKP 283
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+K T + AC + + GK +HG K +D F+ + L+D+Y KCG++ R++F
Sbjct: 284 NKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLKVARRVF 343
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D + ++++ SW ++I+ LA G +A
Sbjct: 344 DMITLKNLTSWNSLINCLALHGHSGSA 370
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 14/162 (8%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLM 70
D + LLD+ G A VF I ++ +WN +I L + G S A+ L+ L+
Sbjct: 319 DSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELI 378
Query: 71 IC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------LMDL 123
C +G +P++ TF V+ AC +EKG + RD ++ L+DL
Sbjct: 379 HCGDGVKPNEVTFVGVLNACTHGGLVEKGYSYFEM-----MRRDYDIEPQIEHFGCLIDL 433
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ G + ++ M + V W ++++ G D A
Sbjct: 434 LGRAGRFEEAMEVVRGMNIEPDEVVWGSLLNACKIHGRSDLA 475
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 98.6 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 77/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF +I ++ WN +I G S QAL ++LM+ +PD+FT ++
Sbjct: 231 GDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLL 290
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++E+GK+VH + ++ FV + L+D+Y KCGD+ R +FD MR ++
Sbjct: 291 SACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNE 350
Query: 147 SWTTMISGLAASGDLDAA 164
W TMIS LA+ G D A
Sbjct: 351 CWNTMISALASHGQSDEA 368
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 82 FPFVIKACIASLAIEKG--KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
P ++KA AS E G K +H A+K+ F+RD+ V +T++ +Y KCG + R+ FD+
Sbjct: 57 LPVLLKAAAASSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116
Query: 140 MRVRSVVSWTTMISGLAASGDLDAA 164
M R+V+S+ +++G A +GD+D A
Sbjct: 117 MPDRNVISYNALLAGYAVAGDMDGA 141
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D AL +F +R TW +IR G +A + G R T+ ++
Sbjct: 136 GDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFE-ATPPGMR-TVVTWTVLV 193
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+ + + +E +EV +R+ FV S+++ Y K GD + R +FD++ R++V
Sbjct: 194 QGYVCAGDMETAREVFDRMP----ARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLV 249
Query: 147 SWTTMISGLAASG 159
+W +I+G A G
Sbjct: 250 NWNALIAGYAQIG 262
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 60/132 (45%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ + ++ L+D+ + G HA +F +R + WN MI AL G S +AL L+
Sbjct: 314 IRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFF 373
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M +G +P+ T V+ AC +++G ++ G + L+DL + G
Sbjct: 374 QMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVEAGVEHYGCLVDLLGRAG 433
Query: 129 DVDGGRKMFDKM 140
+ ++ + M
Sbjct: 434 KLKEAYEIVNNM 445
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R + + L+ Y+ GD++ R++FD+M R+ W++M++G +GD + A
Sbjct: 184 RTVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEA 236
>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]
Length = 1154
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 76/136 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G HA +FS +VF WN +IRA + S +L LY+ M+ G + FTFPF++
Sbjct: 511 GSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLL 570
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC E G H V G+ D+FV ++LM +Y + G D R++F++M R+VV
Sbjct: 571 KACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVV 630
Query: 147 SWTTMISGLAASGDLD 162
SW++M+ A +G +
Sbjct: 631 SWSSMVGAYAHNGRYE 646
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I GL +DQ + + + + G+ D A F I + W MI A + A
Sbjct: 687 VIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINA 746
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G PD T +I A + + + VHG+ ++ F + + + ++DL
Sbjct: 747 LELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDL 806
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KCG+++ RK FD+M R+++SW+TMISG G
Sbjct: 807 YVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHG 842
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ +G +D + L+ + +G D + VF ++ +V +W+ M+ A +G +
Sbjct: 588 HVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEE 647
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
LLL+ M+ G P++ + ++ A + + + + G D VQ+ M
Sbjct: 648 GLLLFWRMLNEGIAPNRGS---IVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMG 704
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y +CG +D R+ F + + +V+WT+MI
Sbjct: 705 MYARCGRIDVARRFFYGILDKDLVAWTSMIEA 736
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R N L ++DL G ++A F ++ ++ +W+ MI + G +A
Sbjct: 788 ITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREA 847
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDM 114
L L++ M + +PD F V+ AC L++E + + VK +D+
Sbjct: 848 LCLFDQMKAS-IKPDHIAFVMVLSACSHELLSMESNTSRNSIQVKVMSCKDL 898
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSS 60
+I GL + + LL C S G +A L+F + P WN +IR +I S
Sbjct: 28 VIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAWNYLIRGFSISSSP 87
Query: 61 LQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L +L YN M+ + RPD FTF F +KAC I K E+HG +++GF D V +
Sbjct: 88 LYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSGFLADAIVSTN 147
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+ Y G V+ K+FD+M VR +VSW MIS + +G
Sbjct: 148 LVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAG 187
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G D ++ L+ S G + A VF ++ + +WN MI + G QA
Sbjct: 133 VIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+Y+ M G D +T ++ +C A+ G +H +A +FV + L+D+
Sbjct: 193 FSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDM 252
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ +F MR R V++W +MI G G
Sbjct: 253 YAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHG 288
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G ++A+ VF +R V TWN MI + G ++A+ + M+ +G RP+
Sbjct: 249 LIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS--TLMDLYLKCGDVDGGRKM 136
TF ++ C +++G E H + + F V+ ++DL+ + G ++ +M
Sbjct: 309 AVTFLGLLLGCSHQGLVKEGVE-HFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEM 367
Query: 137 FDKMRVRS-VVSWTTMISGLAASGDLD 162
V W T++ +L+
Sbjct: 368 IHTSSCHEDPVLWRTLLGSCKIHRNLE 394
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 98.6 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 77/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF +I ++ WN +I G S QAL ++LM+ +PD+FT ++
Sbjct: 231 GDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLL 290
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++E+GK+VH + ++ FV + L+D+Y KCGD+ R +FD MR ++
Sbjct: 291 SACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNE 350
Query: 147 SWTTMISGLAASGDLDAA 164
W TMIS LA+ G D A
Sbjct: 351 CWNTMISALASHGQSDEA 368
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 82 FPFVIKACIASLAIEKG--KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
P ++KA AS E G K +H A+K+ F+RD+ V +T++ +Y KCG + R+ FD+
Sbjct: 57 LPVLLKAAAASSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDE 116
Query: 140 MRVRSVVSWTTMISGLAASGDLDAA 164
M R+V+S+ +++G A +GD+D A
Sbjct: 117 MPDRNVISYNALLAGYAVAGDMDGA 141
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D AL +F +R TW +IR G +A + G R T+ ++
Sbjct: 136 GDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFE-ATPPGMR-TVVTWTVLV 193
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+ + + +E +EV +R+ FV S+++ Y K GD + R +FD++ R++V
Sbjct: 194 QGYVCAGDMETAREVFDRMP----ARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLV 249
Query: 147 SWTTMISGLAASG 159
+W +I+G A G
Sbjct: 250 NWNALIAGYAQIG 262
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 60/132 (45%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ + ++ L+D+ + G HA +F +R + WN MI AL G S +AL L+
Sbjct: 314 IRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFF 373
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M +G +P+ T V+ AC +++G ++ G + L+DL + G
Sbjct: 374 QMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVGAGVEHYGCLVDLLGRAG 433
Query: 129 DVDGGRKMFDKM 140
+ ++ + M
Sbjct: 434 KLKEAYEIVNNM 445
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R + + L+ Y+ GD++ R++FD+M R+ W++M++G +GD + A
Sbjct: 184 RTVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEA 236
>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
Length = 674
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 85/157 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G ++ + L+D + +G D A F ++ + WN+M+ ++G +A
Sbjct: 204 ILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKA 263
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ LM G + D FTF +I +C + GK+VHGL ++ F D+ V S L+D+
Sbjct: 264 FGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDM 323
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y K +++ RK FD M V+++VSWTTM G GD
Sbjct: 324 YSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGD 360
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR D L+ L+D+ S + A F + ++ +W M G +
Sbjct: 305 IIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEX 364
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L MI PD+ ++ +C A + +VH V+ GF + + + L+
Sbjct: 365 MRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSA 424
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + + F + ++SWT+++ A G
Sbjct: 425 YSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHG 460
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALL-----LYNLMICNGFRPDKFTFPFVIKAC 89
+F ++ +V +WN +I + ++G+ AL+ + M+ P+ T +++A
Sbjct: 130 MFDEMPLKNVVSWNTLICGV-VEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRAS 188
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
I + +++H +K+GF + FV S L+D Y K G VD + FD++ R +V W
Sbjct: 189 IELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWN 248
Query: 150 TMISGLAASG 159
M+S A +G
Sbjct: 249 VMVSCYALNG 258
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ GK++H +K G + +Q+ ++ +Y+KC + + KMFD+M +++VVSW T+I G
Sbjct: 89 LHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICG 148
Query: 155 L 155
+
Sbjct: 149 V 149
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A FS + P + +W ++ A G S Q + ++ ++ + RPDK F V+
Sbjct: 429 GSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVL 488
Query: 87 KACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
AC + +G L + D ++++DL + G +D + M V
Sbjct: 489 SACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVE 546
>gi|125564403|gb|EAZ09783.1| hypothetical protein OsI_32071 [Oryza sativa Indica Group]
Length = 628
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF- 75
L+D + +G + A L+F ++ +W MI +G + +AL + M+ +
Sbjct: 276 NSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNGLTSEALAHFVKMLTQEYI 335
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF V+ AC ++ + G+ VH A + GF+ ++V + L+D+Y KCGDV+G
Sbjct: 336 QPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANN 395
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD + + +VSW TM+ G A +G
Sbjct: 396 VFDAIHQKDLVSWNTMLFGFAING 419
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 13 QLLVRKLLDLCSFY------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
++ R L CS G + A +F ++ WN ++ + G++ Q L L
Sbjct: 134 EMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLAL 193
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+N M +G D T ++ AC G +H + V++G++ V ++L+ Y K
Sbjct: 194 FNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTK 253
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D ++F+ M+ R+ SW ++I A G ++ A
Sbjct: 254 FSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQA 291
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G ++ + L+D+ + G + A VF I + +WN M+ I+G +AL +Y
Sbjct: 369 GFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVY 428
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFVQSTL 120
+M + PD+ TF ++ AC S +E+G+ VHG+ K S +
Sbjct: 429 EIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEH------LSCV 482
Query: 121 MDLYLKCGDVDGGRKMFDK 139
+D+Y + G++ +M ++
Sbjct: 483 LDMYARSGNIAKAIEMMEQ 501
>gi|222629606|gb|EEE61738.1| hypothetical protein OsJ_16261 [Oryza sativa Japonica Group]
Length = 767
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 39 IRCPH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96
+ CPH + +W M+ +G +AL L+ LM +G RP++FT+ AC +
Sbjct: 279 MECPHRSLVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCAR 338
Query: 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G++VH A K F+ DMFVQS LMD++L+CG V+ R++F +M + VVSW +I G
Sbjct: 339 SGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFV 398
Query: 157 ASG-DLDA 163
G D DA
Sbjct: 399 ERGHDGDA 406
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L KL+ + +G A VF + V +W M+ +G +AL L+ LM
Sbjct: 92 DLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMR 151
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G RP++FT+ AC + G++VH A K F+ DMFVQS LMD++L+CG V+
Sbjct: 152 ASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVE 211
Query: 132 GGRKMFDKMRVRSVV---SW 148
R++F +M + V SW
Sbjct: 212 DARQLFAEMGKKDVCCISSW 231
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 82 FPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
F F++ CI+S A +GK VHG +A + D+ + + L+ Y + GDV RK+FD M
Sbjct: 60 FRFLLLCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGM 119
Query: 141 RVRSVVSWTTMISGLAASG 159
RSVVSWT M+SG A +G
Sbjct: 120 PHRSVVSWTAMVSGYARNG 138
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ D + L+D+ G + A +F+++ V +WN +IR G AL L++
Sbjct: 352 FAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFS 411
Query: 69 LMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ PD +T +KAC I +A+ + +H +K G+ + V +L++ Y KC
Sbjct: 412 SMLKEAMIPDHYTLGSALKACGIVGVAVNV-ELIHSCIIKLGYWDEKVVIGSLINSYAKC 470
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ R ++D + +VS T +ISG
Sbjct: 471 RSMSSARVIYDSISEPDLVSSTALISG 497
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQ 62
II+ G ++++++ L++ + A +++ I P + + +I T+D + S
Sbjct: 448 IIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSED 507
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ + G D V+ C + + G ++H K D+ + + L+D
Sbjct: 508 AMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVD 567
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G+ ++ FD+M R+V+SWT++I+ +G + A
Sbjct: 568 MYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDA 609
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G+ A F ++ +V +W +I A +GS A+ L+N M+
Sbjct: 558 DIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMV 617
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+G RP+ TF ++ AC KG E + + G S+ +DL + G +
Sbjct: 618 EDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQL 677
Query: 131 DGGRKMFDKMRVR 143
+ K+ K ++
Sbjct: 678 EDAWKLVQKTNLK 690
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + S D + L+D S G A VF + +V +WN +I +G +++A
Sbjct: 182 ISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEA 241
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
L + M GF+PD+ T V+ AC A ++G ++H VK+ F D+ + + L+D
Sbjct: 242 LEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVD 301
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V+ R +FD+M VR+ VS TTM+SG A S + AA
Sbjct: 302 MYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAA 343
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 12 DQLLVRKLLD---LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ VR + + S Y K+ A +F+ I+ + +WN +I T +G + +AL
Sbjct: 317 DRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALG 376
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF------SRDMFVQST 119
L+ ++ P +TF ++ A +E G++ H VK GF D+FV ++
Sbjct: 377 LFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNS 436
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y+KCG V+ G ++F+ M + VSW TMI G A +G
Sbjct: 437 LIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNG 476
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G D + +FS + +WN MI +AL + M + F + ++F
Sbjct: 103 WGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSG 162
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC ++ G ++HGL K+ +S D+F+ S L+D Y KCG V R++FD M ++V
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNV 222
Query: 146 VSWTTMISGLAASG 159
VSW +I+ +G
Sbjct: 223 VSWNCLITCYEQNG 236
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
F D F ++ C+ + + VHG ++ F ++F+Q+ L+D+Y KCG +D R
Sbjct: 20 FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD+M R+V S+ ++IS L G +D +
Sbjct: 80 KVFDRMSERNVFSFNSIISTLMRWGFVDES 109
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D + L+D+ G + L VF + +WN MI +G ++AL L+
Sbjct: 426 GEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELF 485
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHG-LAVKAGFSRDMFVQST 119
M+ +G +PD T + AC + +E+G+ + HG L VK + +
Sbjct: 486 QKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHY-------TC 538
Query: 120 LMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISG 154
++DL + G ++ + + + M + V W++++S
Sbjct: 539 MVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSA 574
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL DQ+ + +L G D A F +I+ W M+ +G ALLL+
Sbjct: 251 GLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLF 310
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ RPD FT V+ +C ++ +G+ VHG AV G D+ V S L+D+Y KC
Sbjct: 311 REMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKC 370
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
G+ +F +M R+V+SW +MI G A +G DL+A
Sbjct: 371 GETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEA 407
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+L S G + VF Q+ ++N +I + +G S QAL + M GF
Sbjct: 95 MLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFEST 154
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+T V+ AC L I++GK++HG V +FV + L ++Y KCG +D R +FD
Sbjct: 155 DYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFD 214
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+M ++VVSW +MISG +G
Sbjct: 215 RMVNKNVVSWNSMISGYLQNG 235
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K + +G+ +D L+ L+D+ S G+T A +VF ++ +V +WN MI +G L+
Sbjct: 347 KAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLE 406
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLM 121
AL LY M+ +PD TF V+ AC+ + +E+G+ + ++ G + S ++
Sbjct: 407 ALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMI 466
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMIS 153
+L + G +D + M + + W+T++S
Sbjct: 467 NLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
D F+Q+ L+ LY K G++ R +FDKM R V SW M+S + SG+++
Sbjct: 57 DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVE 106
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ L + L ++ + G D A +F ++ +V +WN MI +G
Sbjct: 180 RIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPET 239
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+ M +G PD+ T S ++
Sbjct: 240 CTKLFCEMQSSGLMPDQVTI-----------------------------------SNILS 264
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG +D K F +++ + V WTTM+ G A +G + A
Sbjct: 265 AYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDA 306
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
RD+F + ++ Y K G+V+ R +FD+M V VS+ T+I+G + +G
Sbjct: 87 RDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNG 134
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL D ++ +L+ CS + HA P +WN++IR S L+A
Sbjct: 43 GLYQDTRVLSELVYFCSLSPSKNLRHARSFVHHAATPSPISWNILIRGYAASDSPLEAFW 102
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M G P+K TFPF++K+C + A+ +GK+VH AVK G D++V + L++ Y
Sbjct: 103 VFRKMRERGAMPNKLTFPFLLKSCAVASALFEGKQVHADAVKCGLDSDVYVGNNLINFYG 162
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
C + RK+F +M R+VVSW ++++ S
Sbjct: 163 CCKKIVDARKVFGEMPERTVVSWNSVMTACVES 195
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYG---KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL +D + L++ FYG K A VF ++ V +WN ++ A
Sbjct: 143 VKCGLDSDVYVGNNLIN---FYGCCKKIVDARKVFGEMPERTVVSWNSVMTACVESLWLG 199
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ + M GF PD+ + ++ AC + G+ VH V G + + + L+
Sbjct: 200 DGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVLSVQLGTALV 259
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K G + R +F++M R+V +W+ MI GLA G
Sbjct: 260 DMYGKSGALGYARDVFERMENRNVWTWSAMILGLAQHG 297
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM-----ICN 73
L+D+ G +A VF ++ +V+TW+ MI L G +AL L+ +M
Sbjct: 258 LVDMYGKSGALGYARDVFERMENRNVWTWSAMILGLAQHGFGEEALELFAIMNNNNNDNR 317
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
RP+ T+ V+ AC + +++G + H + G M ++D+ + G ++
Sbjct: 318 DIRPNYVTYLGVLCACSHAGMVDEGYQYFHDMECVHGIKPLMTHYGAMVDVLGRAGRLEE 377
Query: 133 GRKMFDKMRVRS-VVSWTTMIS 153
+ M + V W T++S
Sbjct: 378 AYEFIQSMPIEPDPVVWRTLLS 399
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 75/133 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G HA +FS +VF WN +IRA + S +L LY+ M+ G + FTFPF++
Sbjct: 48 GSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLL 107
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC E G H V G+ D+FV ++LM +Y + G D R++F++M R+VV
Sbjct: 108 KACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVV 167
Query: 147 SWTTMISGLAASG 159
SW++M+ A +G
Sbjct: 168 SWSSMVGAYAHNG 180
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I GL +DQ + + + + G+ D A F I + W MI A + A
Sbjct: 224 VIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINA 283
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G PD T +I A + + + VHG+ ++ F + + + ++DL
Sbjct: 284 LELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDL 343
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KCG+++ RK FD+M R+++SW+TMISG G
Sbjct: 344 YVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHG 379
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ +G +D + L+ + +G D + VF ++ +V +W+ M+ A +G +
Sbjct: 125 HVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEE 184
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
LLL+ M+ G P++ + + ACI + + + + G D VQ+ M
Sbjct: 185 GLLLFWRMLNEGIAPNRGSIVNAM-ACIHRE--HEADDFCRVVIDNGLDSDQSVQNAAMG 241
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y +CG +D R+ F + + +V+WT+MI
Sbjct: 242 MYARCGRIDVARRFFYGILDKDLVAWTSMIEA 273
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R N L ++DL G ++A F ++ ++ +W+ MI + G +A
Sbjct: 325 ITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREA 384
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L L++ M + +PD F V+ AC I +G E + G + + ++D
Sbjct: 385 LCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVD 443
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G + + ++M + W ++ +L+ A
Sbjct: 444 LLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETA 486
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D + L+ + G D A VF + V T+N+M+ G +
Sbjct: 183 QVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEK 242
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L+ M G +P+K +F ++ C A+ GK VH + AG D+ V ++L+
Sbjct: 243 AFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIR 302
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CG ++G R++FD M+VR VVSWT MI G A +G+++ A
Sbjct: 303 MYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDA 344
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G + + L+ L S G A +F + V TWN +I G +A
Sbjct: 83 IIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEA 142
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M+ G P TF V+ AC + + GKEVH V AGF D + + L+ +
Sbjct: 143 FALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSM 202
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+K G +D R++FD + +R V ++ M+ G A SGD + A
Sbjct: 203 YVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKA 243
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D + L+ + + G + A VF ++ V +W +MI +G+ A L+
Sbjct: 289 GLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLF 348
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G +PD+ T+ ++ AC S + +E+H AGF D+ V + L+ +Y KC
Sbjct: 349 ATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKC 408
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + R++FD M R VVSW+ MI +G
Sbjct: 409 GAIKDARQVFDAMPRRDVVSWSAMIGAYVENG 440
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D L+ L+ + + G A VF + V +W+ MI A +G +A +
Sbjct: 390 GFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETF 449
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+LM + PD T+ ++ AC A++ G E++ A+KA + + + L+ + K
Sbjct: 450 HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKH 509
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G V+ R +FD M R V++W MI G + G+ A
Sbjct: 510 GSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREA 546
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ L + L L+ + + +G + A +F + V TWN MI ++ G++ +
Sbjct: 486 QAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNARE 545
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLM 121
AL L++ M+ FRP+ TF V+ AC + +++G+ ++ G + + ++
Sbjct: 546 ALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMV 605
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + G++D + M V+ S W++++ G+LD A
Sbjct: 606 DLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVA 649
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G D T+ + + C GK+V ++ G +++ +TL+ LY CG+V
Sbjct: 52 GNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEA 111
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R++FD + ++VV+W +I+G A G + A
Sbjct: 112 RQIFDSVENKTVVTWNALIAGYAQVGHVKEA 142
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ L D +V KL+ S + A F+Q++ P+V +N MIRA + + Q
Sbjct: 68 QILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQ 127
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A + M +G D FTFPF++K C ++ + + VH K GF D+FV ++L+D
Sbjct: 128 AFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLID 187
Query: 123 LYLKCGD--VDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
Y KCG + +K+F M R VVSW +MISGLA G + A
Sbjct: 188 SYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEA 232
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A ++F ++ ++ +W +++ G + +A+ L++ M + D T ++
Sbjct: 289 GDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSIL 348
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR----- 141
AC S + G+++H F + + L+D+Y KCG +D G + F M
Sbjct: 349 AACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGLIDDGIRYFSTMERDYTL 408
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
V V + M+ L G L+ A
Sbjct: 409 VPEVEHYGCMVDLLGRKGRLEEA 431
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R++ ST++ Y K GD++ R +FDKM V+++VSWT ++SG A G
Sbjct: 272 ERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKG 320
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 80/150 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL + + L++L + G D A+LVF + + TW +I + G AL
Sbjct: 141 VRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVAL 200
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M +G RPD+F + AC A +E G++ HG A + D V + L+DLY
Sbjct: 201 ELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLY 260
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
KC + RK+FD M R++VSWTTMI+G
Sbjct: 261 CKCSRLSLARKLFDCMENRNLVSWTTMIAG 290
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G S D L+D+ S + + A VF+ + + WN MI L + +A
Sbjct: 443 IVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEA 502
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+N + +G P++FTF ++ +++ G++ H +KAG D V + L+D+
Sbjct: 503 VKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDM 562
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + GR +F+ + V+ W +MIS A G + A
Sbjct: 563 YAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEA 603
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R + D ++ L+DL + A +F + ++ +W MI + +A+
Sbjct: 243 RIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMA 302
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ + G++PD F ++ +C + AI +G++VH A+KA D +V+++L+D+Y
Sbjct: 303 MFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYA 362
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC + R +F+ + +S+ MI G + GDL A
Sbjct: 363 KCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGA 401
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ L +D+ + L+D+ Y K +H A VF + ++N MI + G
Sbjct: 343 IKANLESDEYVKNSLIDM---YAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLA 399
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ +++ M +P TF ++ + AIE K++HGL VK+G S D++ S+L+
Sbjct: 400 GAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLI 459
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D+Y K V+ + +F+ M R +V W MI GLA
Sbjct: 460 DVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLA 494
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM- 70
D L LL S G+ A +F ++ ++ +W I G A+ L+
Sbjct: 45 DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104
Query: 71 -ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
G P++F ++AC S A+ G++VHG+AV+ G +++V + L++LY K G
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D +FD + V++ V+WT +I+G + G
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIG 194
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G +D + L+D+ + G L+F V WN MI G + +
Sbjct: 543 QIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEE 602
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
AL ++ +M G P+ TF V+ AC + +++G + + K ++++
Sbjct: 603 ALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVV 662
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+L+ + G + ++ ++M + + W +++S G+++
Sbjct: 663 NLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVE 704
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
H AV G D+F+ + L+ Y K G V R++FD+M +++VSW + IS A G
Sbjct: 33 AHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHG 91
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL DQ L+D+ S G+ + A+ VF I P V +WN +I + + A
Sbjct: 209 MLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLA 268
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L + M +G RP+ FT +KAC A E G+++H +K D+F L+D+
Sbjct: 269 LMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDM 328
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD-LDA 163
Y KC +D R+ +D M + +++W +ISG + GD LDA
Sbjct: 329 YSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDA 369
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++G S D L L+ L S + +A + + V +W+ ++ +G +A
Sbjct: 7 LIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEA 66
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL++N M G + ++FTFP V+KAC + G++VHG+AV GF D FV +TL+ +
Sbjct: 67 LLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVM 126
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y KCG +D R++F + R+VVSW + S
Sbjct: 127 YAKCGLLDDSRRLFGGIVERNVVSWNALFS 156
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G+ +D ++ LLD YGK +H A +F + + + MI A + G
Sbjct: 412 IKSGIYSDFYVINSLLDT---YGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGE 468
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL LY M +PD F ++ AC A E+GK++H A+K GF D+F ++L+
Sbjct: 469 EALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLV 528
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++Y KCG ++ + F ++ R +VSW+ MI G A G
Sbjct: 529 NMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHG 566
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D + L+ + + G D + +F I +V +WN + +A+ L+
Sbjct: 112 GFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLF 171
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G P++F+ ++ AC + G+++HGL +K G D F + L+D+Y K
Sbjct: 172 KEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKA 231
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
G+++G +F + VVSW +I+G
Sbjct: 232 GEIEGAVAVFQDIAHPDVVSWNAIIAG 258
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ +D L+D+ S D A + + + WN +I + G L A
Sbjct: 310 LIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDA 369
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M ++ T V+K+ + AI+ K++H +++K+G D +V ++L+D
Sbjct: 370 VSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDT 429
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC +D K+F++ +V++T+MI+ + GD + A
Sbjct: 430 YGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEA 470
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
E+H +K GFSRD +++ L+ LY KC RK+ D+ VVSW++++SG +G
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61
Query: 160 DLDAA 164
++ A
Sbjct: 62 FVEEA 66
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++G D L+++ + G + A FS+I + +W+ MI G +AL
Sbjct: 513 IKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEAL 572
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
L+N M+ +G P+ T V+ AC + + +GK+
Sbjct: 573 RLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQ 608
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G ++ + LLDL + YG D A LVF + + +WN +I + +AL
Sbjct: 179 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKAL 238
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ GFRP F++ + AC ++ +E+GK VH +K+G F +TL+D+Y
Sbjct: 239 ELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 298
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + RK+FD++ R VVSW ++++ A G
Sbjct: 299 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG 333
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q I R+ D ++ LL++ + G + A VF ++ TW +I +
Sbjct: 78 IQSIFRH----DLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRP 133
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL+L+N M+ GF P++FT VIKA A G ++HG VK GF ++ V S L
Sbjct: 134 FDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSAL 193
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+DLY + G +D + +FD + R+ VSW +I+G A
Sbjct: 194 LDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 229
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D+ + ++K C + +G+ VHG +++ F D+ + +TL+++Y KCG ++ RK+F
Sbjct: 50 DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109
Query: 138 DKMRVRSVVSWTTMISGLA 156
DKM R V+WTT+ISG +
Sbjct: 110 DKMPERDFVTWTTLISGYS 128
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ + G A +F ++ V +WN ++ A G +A+ + M G RP+
Sbjct: 294 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPN 353
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ +F V+ AC S +++G + L K G + + T++DL + GD++ + +
Sbjct: 354 EISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIE 413
Query: 139 KMRVRSVVS-WTTMISG 154
+M + + W +++
Sbjct: 414 EMPIEPTAAIWKALLNA 430
>gi|414865182|tpg|DAA43739.1| TPA: hypothetical protein ZEAMMB73_281838 [Zea mays]
Length = 1925
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALL 65
G D +V L++ ++GK A L+F++ P V++ NL +R + G + L
Sbjct: 68 GAIQDTFVVTGLVERYVYFGKAASAALLFAETYRSRPAVYSLNLAVRCFSDHGFHRELLH 127
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY + C F D FTFP VI+AC A + G+E+H ++ G ++ VQ+ L+DLY
Sbjct: 128 LYRELCC--FGSDNFTFPPVIRACTAVSCLRLGREMHCRVLRTGHGGNVGVQTALLDLYA 185
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G +D R++FD M +R ++SW M+SG
Sbjct: 186 KAGQIDVSRRVFDCMVLRDLISWNAMVSG 214
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
L+ C PD T VI C + + K +H AV+ F V + L+ +Y C
Sbjct: 397 LLFCCCVAPDATTIMNVISGCRYTKDLHMAKSIHAYAVRNKFESYHSVMNALLAMYADCR 456
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
D+ +F KM VR ++SW TMISG A GD D
Sbjct: 457 DISTSHTLFQKMEVRMLISWNTMISGFAEIGDSD 490
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R G + + LLDL + G+ D + VF + + +WN M+ +++ +
Sbjct: 164 RVLRTGHGGNVGVQTALLDLYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSLNECFRE 223
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ + M G RP+ TF ++ C + + G +H A+K G D + S L+
Sbjct: 224 AVEMLQEMQQGGMRPNASTFVGIVGMCGSVGDRDVGDSLHAFALKGGVINDESLTSALIT 283
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y D+ R +FD V+ +VS+ +MIS
Sbjct: 284 MYAAFDDLSSSRMVFDLHPVKDLVSFNSMISA 315
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 29 TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88
T H L F ++ + +WN MI G S L+L+ M + D T +I +
Sbjct: 460 TSHTL--FQKMEVRMLISWNTMISGFAEIGDSDTCLILFCQMFHEEVQFDLVTLIGLISS 517
Query: 89 -CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
+ AI G+ VH LA+K+G + D+ + + L+ +Y CG V+ G+++FD R+ ++
Sbjct: 518 FSVPGDAI-VGESVHSLAIKSGCNSDVSLTNALITMYANCGIVEAGQQLFDSCCSRNTIT 576
Query: 148 WTTMISG 154
+ ++SG
Sbjct: 577 YNALMSG 583
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ ND+ L L+ + + + + +VF + ++N MI A +A
Sbjct: 267 LKGGVINDESLTSALITMYAAFDDLSSSRMVFDLHPVKDLVSFNSMISAYMQHHIWKEAF 326
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ LM C RP+ T V+ +C I G+ VHG+ +K G + + V S L+ +Y
Sbjct: 327 EIFRLMHCVAVRPNLVTVVSVLPSCSDFFGINHGESVHGMIIKLGLAEHVSVASALVSMY 386
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G +D +F + +ISG + DL A
Sbjct: 387 SKLGKLDSSLLLFCCCVAPDATTIMNVISGCRYTKDLHMA 426
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
M I++ G S + L++ L+D S G A +F TW MI A ++ G+
Sbjct: 730 MAVILQKGFSTNILVLNALIDTHSRCGSISLARELFDSSVEKDSVTWGAMINAYSMHGNG 789
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQST 119
AL L+++MI +G PD TF ++ AC + +E+G+ + L G + M +
Sbjct: 790 EAALDLFSMMIDSGVDPDDITFVSILSACAHNGLVEQGRTLFKSLQADYGITPRMEHYAC 849
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVR 143
++DL + G +D + M R
Sbjct: 850 MVDLLGRTGHLDEAYDVVRSMPFR 873
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 64/141 (45%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
S + ++ +FS I ++ WN + A + + + M+ RPD T
Sbjct: 652 SRFNNIEYCSKIFSLIGARNLIVWNAFLSACVQCKQADMVVDCFKHMLFLNVRPDAVTML 711
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+I AC + + ++ GFS ++ V + L+D + +CG + R++FD +
Sbjct: 712 ALISACSQLGNAYFAACIMAVILQKGFSTNILVLNALIDTHSRCGSISLARELFDSSVEK 771
Query: 144 SVVSWTTMISGLAASGDLDAA 164
V+W MI+ + G+ +AA
Sbjct: 772 DSVTWGAMINAYSMHGNGEAA 792
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + L+ KL+ L + L+F + P F +N +I++ + L
Sbjct: 32 LIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHC 91
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y M+ + P +TF VIK+C A+ GK VH AV +GF D +VQ+ L+
Sbjct: 92 VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTF 151
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD++G R++FD+M +S+V+W +++SG +G D A
Sbjct: 152 YSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEA 192
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 22 LCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY G + A VF ++ + WN ++ +G + +A+ ++ M +GF PD
Sbjct: 148 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 207
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF ++ AC + A+ G VH + G ++ + + L++LY +CGDV R++FD
Sbjct: 208 SATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFD 267
Query: 139 KMRVRSVVSWTTMISGLAASG 159
KM+ +V +WT MIS G
Sbjct: 268 KMKETNVAAWTAMISAYGTHG 288
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q II GL + L L++L S G A VF +++ +V W MI A G
Sbjct: 232 QYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQ 291
Query: 62 QALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108
QA+ L+N M + G P+ TF V+ AC + +E+G+ V+ K+
Sbjct: 292 QAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKS 339
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ L D +V KL+ S + A F+Q++ P+V +N MIRA + + Q
Sbjct: 42 QILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQ 101
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A + M +G D FTFPF++K C ++ + + VH K GF D+FV ++L+D
Sbjct: 102 AFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLID 161
Query: 123 LYLKCGD--VDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
Y KCG + +K+F M R VVSW +MISGLA G + A
Sbjct: 162 SYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEA 206
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 67/133 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A ++F ++ ++ +W +++ G + +A+ L++ M + D T ++
Sbjct: 263 GDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSIL 322
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S + G+++H F + + L+D+Y KCG ++ +F+ ++ + VV
Sbjct: 323 AACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVV 382
Query: 147 SWTTMISGLAASG 159
SW M+ GLA G
Sbjct: 383 SWNAMLQGLAMHG 395
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G+ + A VF+ I+ V +WN M++ L + G ++AL L+ M GF P+
Sbjct: 356 LVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPN 415
Query: 79 KFTFPFVIKACIASLAIEKG 98
K T V+ AC + I+ G
Sbjct: 416 KVTMIGVLCACTHAGLIDDG 435
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R++ ST++ Y K GD++ R +FDKM V+++VSWT ++SG A G
Sbjct: 246 ERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKG 294
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ D LV + + + + F+Q+ P+VF +N MI+ G +A
Sbjct: 159 MIKTNAIQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRA 218
Query: 64 LLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L Y +++ + P +TF ++KAC A+E G+ VH K GF +FVQ+ L+D
Sbjct: 219 LQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVD 278
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K + RK+FD+M R +WT M+S LA GD+D+A
Sbjct: 279 FYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSA 320
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A L+F+Q+ + +W MI + + AL +Y+ M NG PD+ T V
Sbjct: 346 GNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVA 405
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E GKE+H + G + D+++ S L+D+Y KCG +D +F K+ +++
Sbjct: 406 SACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLY 465
Query: 147 SWTTMISGLAASGDLDAA 164
W +I GLA G + A
Sbjct: 466 CWNAVIEGLAVHGYAEKA 483
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ GL+ D + L+D+ + G D +LL+F ++ +++ WN +I L + G + +A
Sbjct: 424 VMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKA 483
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMD 122
L ++ +M P+ TF ++ AC + +++G+ + D+ ++D
Sbjct: 484 LRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVD 543
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ K G ++ ++ M + + W +++G G+ + A
Sbjct: 544 MLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIA 586
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L +L + +G+ HA VF+++ VF+WN+M+ G +AL LY M+ G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD +TFP V++ C G+EVH ++ GF ++ V + L+ +Y KCGD+ R
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD M V +SW MI+G + + +A
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAG 282
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L Y K+ H A+ VF + V +W+ MI + S +AL + M+ + +P+
Sbjct: 440 LLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPN 498
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + AC A+ A+ GKE+H ++ G + +V + L+DLY+KCG F
Sbjct: 499 SVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFS 558
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ VVSW M+SG A G D A
Sbjct: 559 VHSEKDVVSWNIMLSGFVAHGLGDIA 584
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G ++ ++ L+ + + G A VF + +WN MI +
Sbjct: 223 VLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAG 282
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ N +P+ T V A + KE+HG AVK GF+ D+ ++L+ +
Sbjct: 283 LELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQM 342
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G + K+F +M + +SWT MISG +G D A
Sbjct: 343 YTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKA 383
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + D L+ + + G+ A +FS++ +W MI +G +AL
Sbjct: 325 VKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKAL 384
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y LM + PD T + AC ++ G ++H LA GF R + V + L+++Y
Sbjct: 385 EVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMY 444
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K +D ++F M + VVSW++MI+G
Sbjct: 445 AKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ ++ + LLDL G+T +A FS V +WN+M+ G A
Sbjct: 525 VLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIA 584
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L L+N M+ G PD+ TF ++ AC + + +G E+ H + K ++ + ++D
Sbjct: 585 LSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVD 644
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
L + G + + ++M ++ W +++G
Sbjct: 645 LLSRVGKLTEAYNLINRMPIKPDAAVWGALLNG 677
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+RAL G QAL L + + PD+ + + + C A++ G A
Sbjct: 71 LRALCSHGQLAQALWL---LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHP 127
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S + + + ++ + ++ G++ ++F KM R V SW M+ G G L+ A
Sbjct: 128 SFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEA 181
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G+ + ++ KL+ S+Y D A +F + +W++M+ G +
Sbjct: 88 HGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGT 147
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ +I G RPD +T PFVI+AC ++ G+ +H + K G D FV + L+D+Y+K
Sbjct: 148 FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 207
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
C +++ R +FDKM+ R +V+WT MI G A G + +
Sbjct: 208 CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 245
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G+ + ++ KL+ S+Y D A +F + +W++M+ G +
Sbjct: 764 HGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGT 823
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ +I G RPD +T PFVI+AC ++ G+ +H + K G D FV + L+D+Y K
Sbjct: 824 FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGK 883
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
C +++ R +FDKM R +V+WT MI G A G+ + +
Sbjct: 884 CREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANES 921
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ ++GL D + L+D+ + + A +F +++ + TW +MI G + ++
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 245
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L+ M G PDK V+ AC A+ K + + + F D+ + + ++D+
Sbjct: 246 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 305
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V+ R++FD+M ++V+SW+ MI+ G
Sbjct: 306 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 341
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ ++GL D + L+D+ + + A +F ++ + TW +MI G++ ++
Sbjct: 862 VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANES 921
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L++ M G PDK V+ AC A+ K + + + F D+ + + ++D+
Sbjct: 922 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDM 981
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ KCG V+ R++FD+M ++V+SW+ MI+ G
Sbjct: 982 HAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 1017
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R D +L ++D+ + G + A +F ++ +V +W+ MI A G +A
Sbjct: 287 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 346
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ +M+ +G PDK T ++ AC + +E+G + + D+ + ++D
Sbjct: 347 LDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVD 406
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
L + G +D K+ M +
Sbjct: 407 LLGRAGRLDEALKLIKSMTIE 427
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R D +L ++D+ + G + A +F ++ +V +W+ MI A G +A
Sbjct: 963 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 1022
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ +M+ +G P+K T ++ AC + +E+G
Sbjct: 1023 LDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 1057
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
F I A + + + ++VH A G ++ V + L+ Y +D +FD M VR
Sbjct: 64 FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 123
Query: 144 SVVSWTTMISGLAASGD 160
VSW+ M+ G A GD
Sbjct: 124 DSVSWSVMVGGFAKVGD 140
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
++VH A G +++ V + L+ Y +D +FD M VR VSW+ M+ G A
Sbjct: 755 RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814
Query: 159 GD 160
GD
Sbjct: 815 GD 816
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
L KLL + G A+ VF ++ +FTWN M+ A G L+A+ LY M
Sbjct: 80 FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVL 139
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G D TFP V+KAC A G E+HG+AVK GF +FV + L+ +Y KCGD+ G
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGA 199
Query: 134 RKMFDK--MRVRSVVSWTTMISGLAASG 159
R +FD M VSW ++IS G
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVTEG 227
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L ++++ G D+A F IR + +W MI +G ++AL L+ +
Sbjct: 483 DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+PD + A +++KGKE+HG ++ GF + + S+L+D+Y CG V+
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
RKMF ++ R ++ WT+MI+ G
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHG 630
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+ + + G+ + A VF+ + C +WN ++ L + AL + M
Sbjct: 282 DVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQ 341
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+ +PD+ + +I A S + GKEVH A++ G +M + +TL+D+Y KC V
Sbjct: 342 NSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVK 401
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAAS 158
F+ M + ++SWTT+I+G A +
Sbjct: 402 HMGYAFECMHEKDLISWTTIIAGYAQN 428
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN +I A +G L+AL L+ M G + +TF ++ ++ G +HG A
Sbjct: 215 SWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAA 274
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+K+ D++V + L+ +Y KCG ++ ++F M R VSW T++SGL
Sbjct: 275 LKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGL 324
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 1/155 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL ++ + L+D+ + H F + + +W +I + L+A+
Sbjct: 376 IRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAI 435
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + G D V++AC + +E+HG K + D+ +Q+ ++++Y
Sbjct: 436 NLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVY 494
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ G D R+ F+ +R + +VSWT+MI+ +G
Sbjct: 495 GEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNG 529
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C+A A+ +G+++H +K+ S F+ + L+ +Y KCG + K+FD+M R++ +W
Sbjct: 56 CVAVKALPQGQQLHARLLKSHLS--AFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTW 113
Query: 149 TTMISGLAASG 159
M+ +SG
Sbjct: 114 NAMMGAFVSSG 124
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + + L+D+ + G +++ +F ++ + W MI A + G +A
Sbjct: 576 LIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEA 635
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
+ L+ M PD TF ++ AC S + +GK + +K G+ + + + + ++
Sbjct: 636 IALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEI-MKYGYQLEPWPEHYACMV 694
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMI 152
DL + ++ + M ++ S W ++
Sbjct: 695 DLLSRSNSLEEAYQFVRSMPIKPSSEVWCALL 726
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQA 63
I++ L D + L+ + GK DHA +F + V TWN +I + G S A
Sbjct: 452 IKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAA 511
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LY+ M+ G P+ T VI AC +A+E+G+++H + G+ D+ + + L+D+
Sbjct: 512 MSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDM 571
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R++FD M VV+W MISG G+ A
Sbjct: 572 YAKCGQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQA 612
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL L KL+ S G+ A L FS P F WN +IR + AL
Sbjct: 37 VTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCASDFVAAL 96
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQSTL 120
+ M+ +G RP FT P A A+ G VH V+ G + V S+L
Sbjct: 97 SAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGDSVAVASSL 156
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+ +Y +CG+V K+F++M R VV+WT +ISG +G+
Sbjct: 157 VYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGE 196
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 70/156 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G+ + +++ L + S T+ A +F ++ V +W +I G +A
Sbjct: 246 VVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEA 305
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ +G +PD+ V+ + + GK H + K F + + + L+ +
Sbjct: 306 MELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISM 365
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K VD ++F + R SW M+ G +G
Sbjct: 366 YGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAG 401
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 5 IRYGL----SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+RYGL + + L+ + + G A+ VF ++ V W +I +G S
Sbjct: 138 VRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGES 197
Query: 61 LQALLLYNLMIC----NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+ L M+ RP+ T ++AC + G+ +HG VK G V
Sbjct: 198 GEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMV 257
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
S L +Y KC + +F ++ + VVSWT++I
Sbjct: 258 ISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLI 293
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK D A VF + +WNLM+ G ++ L LY M D
Sbjct: 362 LISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLR----D 417
Query: 79 KFTFPFV-------IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
K+ F V I +C + G+ H ++K D V + L+ +Y +CG D
Sbjct: 418 KYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFD 477
Query: 132 GGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
K+F +++ VV+W T+IS A G +AA
Sbjct: 478 HACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAA 511
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 2 QKIIRY----GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
+KI Y G D + L+D+ + G+ A +F + V WN+MI +
Sbjct: 547 EKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYGMH 606
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G + QAL L+ M +P+ TF ++ A S +E+G++V K ++
Sbjct: 607 GEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYSLEPNLKHY 666
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMIS 153
+ ++DL K G + M M + W T++S
Sbjct: 667 ACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLS 703
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHV---FTWNLMIRALTIDGSSLQALLLYNLMICN-G 74
L S YG+ ++A VF ++R V +WN ++ A G S++A+ ++ M + G
Sbjct: 167 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 226
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD + V+ AC + A +GK+VHG A+++G D+FV + ++D+Y KCG ++
Sbjct: 227 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 286
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+F++M+V+ VVSW M++G + G D A
Sbjct: 287 KVFERMKVKDVVSWNAMVTGYSQIGRFDDA 316
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 9 LSNDQLLVRKL----LDLCSFYGKTDHALLVFSQIRCPH-----VFTWNLMIRALTIDGS 59
L + QLLV+ L + S Y + S +R H VF WN +IR G
Sbjct: 47 LIHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGF 106
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L LY M G+RPD +TFPFV+KAC + G VH + +GF ++FV +
Sbjct: 107 LEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNG 166
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSV---VSWTTMISGLAASGD 160
L+ +Y +CG + R++FD+MR R V VSW ++++ GD
Sbjct: 167 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+D +++ L+D+ S A +F I + V TW ++I G + +AL L++
Sbjct: 407 DDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFS 466
Query: 69 LMIC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM-FVQSTLMDLYL 125
M+ N P+ FT + AC A+ G+++H ++ F M FV + L+D+Y
Sbjct: 467 QMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYS 526
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K GDVD R +FD M R+ VSWT++++G G + A
Sbjct: 527 KSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEA 565
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 27 GKTDHALLVFSQIRCP----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ D AL +F +IR +V TW+ +I G +AL ++ M G P+ T
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFS-------RDMFVQSTLMDLYLKCGDVDGGRK 135
++ C + + GKE H A+K + D+ V + L+D+Y KC R
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 430
Query: 136 MFD--KMRVRSVVSWTTMISGLAASGDLDAA 164
MFD + RSVV+WT +I G A G+ + A
Sbjct: 431 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEA 461
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G D A +VF + + +W ++ + G +AL ++ M G PD
Sbjct: 521 LIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPD 580
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC S +++G +G+ G + ++DL + G +D ++
Sbjct: 581 GVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELI 640
Query: 138 DKMRVRSVVS-WTTMIS 153
M ++ + W ++S
Sbjct: 641 RGMPMKPTPAVWVALLS 657
>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 770
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 11/144 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G+T+ A+ +F ++ V TWN MI L QAL ++ ++ +
Sbjct: 330 GETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAM 389
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF ++ C +A+E+G+++H +K GF D+ V S L+++Y KCG ++ K
Sbjct: 390 KPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATK 449
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
F +M R++V+WT+MISG + G
Sbjct: 450 AFVEMPTRTLVTWTSMISGYSQHG 473
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 84/153 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D + L+++ G + A +F ++ +V TW +I T++ + A
Sbjct: 104 MVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLA 163
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M+ G P +T ++ AC+AS I+ GK+VHG +K G + + ++L L
Sbjct: 164 LEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRL 223
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y K G+++ G + F ++ ++V++WTTMIS A
Sbjct: 224 YTKSGNLESGIRAFKRIPDKNVITWTTMISACA 256
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-A 63
I+YG ++ + L L + G + + F +I +V TW MI A D + +
Sbjct: 206 IKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELG 265
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ P++FT V+ C SL + GK+V G K G + ++ V+++ M L
Sbjct: 266 LNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYL 325
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
YL+ G+ + ++F++M SV++W MISG A
Sbjct: 326 YLRKGETEEAMRLFEEMEDNSVITWNAMISGFA 358
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 47/70 (67%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ CI + ++ K +HG VK G D+FV ++L+++Y++CG+ R +FD+M ++
Sbjct: 84 LLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKN 143
Query: 145 VVSWTTMISG 154
VV+WT +I+G
Sbjct: 144 VVTWTALITG 153
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G +D ++ L+++ + G ++A F ++ + TW MI + G
Sbjct: 418 QTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHD 477
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ MI G +P++ TF ++ AC A L E + + + M ++
Sbjct: 478 AIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMI 537
Query: 122 DLYLKCGDVDGG-----RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D++++ G +D RK F+ + W+++++G + G+++ A
Sbjct: 538 DMFVRLGRLDDAYAFIKRKGFEP----NEAIWSSLVAGCRSHGNMELA 581
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 27 GKTDHALLVFSQIR------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF 80
G D AL V +Q+ P+V +W+ +I G + +AL L+ M P+
Sbjct: 228 GLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVV 287
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
T V+ AC+ LA+ G+E+HG A+KA R V++ L+++Y KCG V G RK+FD M
Sbjct: 288 TMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGM 347
Query: 141 RVRSVVSWTTMISGLAASGDLDAA 164
+ R ++SW +M++G G D A
Sbjct: 348 KTRDLISWNSMLAGYGMHGLCDEA 371
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGK 99
P TW ++ A G L L+ M +G + + + AC LA+ KGK
Sbjct: 108 PDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGK 167
Query: 100 EVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+HG V G +FV ++L+ +Y K G++D +K F ++ V+W T+I+ AA+
Sbjct: 168 AIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAA 227
Query: 159 GDLDAA 164
G D A
Sbjct: 228 GLCDEA 233
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L L+ L+++ + GK A VF ++ + +WN M+ + G +AL L+
Sbjct: 317 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 376
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKC 127
M PD TF V+ AC + + +G+ + V+A S M + ++ L +
Sbjct: 377 DMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRA 436
Query: 128 GDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGD 160
G + ++ + M VR + W +++ GD
Sbjct: 437 GLLRDASELVETMPVRPDLCVWGALLNSCRIHGD 470
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P+ +T P ++A + VH A+ G V ++ Y + G R++
Sbjct: 9 PNSYTLPLALRAAASPRV---ASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRV 65
Query: 137 FDKMRV-RSVVSWTTMISGLAASGDLDAA 164
FD M R+ W +IS ++ D DAA
Sbjct: 66 FDAMPPGRTTFHWNALISAYSSGCDPDAA 94
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I + L+ + +DL F ++A L+FSQI P+ + +N+MIR LT
Sbjct: 53 QMIINAIHKPNFLLHRFIDLKDF----NNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFN 108
Query: 63 -ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ Y M G RP+ FT+PFV AC L + G+ H +K+G D V+ +L+
Sbjct: 109 LTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLI 168
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG++ R++FD++ + +VSW +MISG + G
Sbjct: 169 TMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMG 206
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 12 DQLLVRKLLDLCSF--------YGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ +V +DL SF YGK A VF ++ V TWN MI +G S
Sbjct: 250 EGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVS 309
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A++L++ M +G PDK T V+ AC + A++ GK + A + G D++V + L
Sbjct: 310 DEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTAL 369
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D+Y KCG +D ++F+ M ++ VSW MIS LA G
Sbjct: 370 IDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHG 408
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+ + S G+ A VF +I + +WN MI + G + A
Sbjct: 152 VLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDA 211
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M GF PD+ T ++ AC + G + G V+ + FV S L+ +
Sbjct: 212 VGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGM 271
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+ R++FD+M + VV+W MI+G A +G D A
Sbjct: 272 YGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEA 312
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL ND + L+D+ + G D AL VF + + +WN MI AL G ++L L+
Sbjct: 358 GLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLF 417
Query: 68 NLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLY 124
M G RP+ +F V+ AC+ + +++G+++ L + G + S ++DL
Sbjct: 418 KRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLL 477
Query: 125 LKCGDVDGGRKMFDKM 140
+ G V +KM
Sbjct: 478 ARAGHVHEAWDFIEKM 493
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++++ GL D + K L C +D +A +VF P F WNLMIR +
Sbjct: 65 RMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDE 124
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++LLLY M+C + +TFP ++KAC A+E+ ++H K G+ D++ ++
Sbjct: 125 PERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNS 184
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L++ Y G+ +FD++ VSW ++I G A +G +D A
Sbjct: 185 LINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIA 229
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK D AL +F ++ + +W MI G +AL L++ M + PD + +
Sbjct: 224 GKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANAL 283
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E+GK +H K D + L+D+Y KCGD+ ++F ++ +SV
Sbjct: 284 SACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQ 343
Query: 147 SWTTMISGLAASG 159
+WT +ISG A G
Sbjct: 344 AWTALISGYAYHG 356
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ + G AL VF I+ V W +I G +A+ + M
Sbjct: 310 DSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQ 369
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL------MDLYL 125
G +P+ TF V+ AC + +E+GK + RD ++ T+ +DL
Sbjct: 370 KMGIKPNVITFTTVLTACSYTGLVEEGK-----LIFYNMERDYNLKPTIEHYGCVVDLLS 424
Query: 126 KCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
+ G +D ++ +M ++ + V W ++
Sbjct: 425 RAGLLDEAKRFIQEMPLKPNAVIWGALLKA 454
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHV---FTWNLMIRALTIDGSSLQALLLYNLMICN-G 74
L S YG+ ++A VF ++R V +WN ++ A G S++A+ ++ M + G
Sbjct: 186 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 245
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD + V+ AC + A +GK+VHG A+++G D+FV + ++D+Y KCG ++
Sbjct: 246 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 305
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+F++M+V+ VVSW M++G + G D A
Sbjct: 306 KVFERMKVKDVVSWNAMVTGYSQIGRFDDA 335
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 9 LSNDQLLVRKL----LDLCSFYGKTDHALLVFSQIRCPH-----VFTWNLMIRALTIDGS 59
L++ QLLV+ L + S Y + S +R H VF WN +IR G
Sbjct: 66 LTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGF 125
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L LY M G+RPD +TFPFV+KAC + G VH + +GF ++FV +
Sbjct: 126 LEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNG 185
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSV---VSWTTMISGLAASGD 160
L+ +Y +CG + R++FD+MR R V VSW ++++ GD
Sbjct: 186 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+D +++ L+D+ S A +F I + V TW ++I G + +AL L++
Sbjct: 426 DDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFS 485
Query: 69 LMIC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM-FVQSTLMDLYL 125
M+ N P+ FT + AC A+ G+++H ++ F M FV + L+D+Y
Sbjct: 486 QMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYS 545
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K GDVD R +FD M R+ VSWT++++G G + A
Sbjct: 546 KSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEA 584
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 27 GKTDHALLVFSQIRCP----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ D AL +F +IR +V TW+ +I G +AL ++ M+ G P+ T
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFS-------RDMFVQSTLMDLYLKCGDVDGGRK 135
++ C ++ + GKE H A+K + D+ V + L+D+Y KC R
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 449
Query: 136 MFD--KMRVRSVVSWTTMISGLAASGDLDAA 164
MFD + RSVV+WT +I G A G+ + A
Sbjct: 450 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEA 480
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G D A +VF + + +W ++ + G +AL ++ M PD
Sbjct: 540 LIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPD 599
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC S +++G +G+ G + ++DL + G +D ++
Sbjct: 600 GVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELI 659
Query: 138 DKMRVRSVVS-WTTMIS 153
M ++ + W ++S
Sbjct: 660 RGMPMKPTPAVWVALLS 676
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPF 84
+G A VF ++ ++F+WN+++ G +A+ LY+ M+ G +PD +TFP
Sbjct: 142 FGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPC 201
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V++ C + +G+EVH V+ G+ D+ V + L+ +Y+KCGDV R +FD+M R
Sbjct: 202 VLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261
Query: 145 VVSWTTMISGLAASG 159
++SW MISG +G
Sbjct: 262 IISWNAMISGYFENG 276
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++RYG D +V L+ + G A L+F ++ + +WN MI +G +
Sbjct: 222 VVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEG 281
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M PD T VI AC G+++H + GF+ D+ V ++L +
Sbjct: 282 LKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQM 341
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
YL G K+F +M + +VSWTTMISG
Sbjct: 342 YLYAGSWREAEKLFSRMDCKDIVSWTTMISG 372
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 78/152 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + D + L + + G A +FS++ C + +W MI + +A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKA 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y +M + +PD+ T V+ AC ++ G E+H LA+KA + V + L+++
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC +D +F + ++V+SWT++I+GL
Sbjct: 443 YSKCKCIDKALDIFHNIPRKNVISWTSIIAGL 474
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ L+++ S D AL +F I +V +W +I L ++ +AL+ + M
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMT 493
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+P+ T + AC A+ GKE+H ++ G D F+ + L+D+Y++CG ++
Sbjct: 494 -LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIA 552
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASG 159
F+ + + V SW +++G + G
Sbjct: 553 WNQFNSQK-KDVSSWNILLTGYSERG 577
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ D L LLD+ G+ + A F+ + V +WN+++ + G
Sbjct: 524 VLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQGSVV 582
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M+ RPD+ TF ++ C S + +G + G + ++ + ++DL
Sbjct: 583 VELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYACVVDL 642
Query: 124 YLKCGDVDGGRKMFDKMRV 142
+ G++ K KM V
Sbjct: 643 LGRAGELQEAHKFIQKMPV 661
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I GLS D+ V K+L + G +++ V + P +F WN +IR + +
Sbjct: 37 VITLGLSQDEPFVSKILSFSALSDSGNINYSCWVLFSLLNPTIFNWNTVIRGYSKSKNPN 96
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
++ ++ M+ G PD T+PF++KA L E G +H +K GF D F+ ++L+
Sbjct: 97 GSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSIHAHIIKHGFESDRFISNSLV 156
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y GD+ R +FD M V+++VSW +M+ G A G++
Sbjct: 157 HMYASFGDISCARYVFDGMPVKNLVSWNSMVDGSAKCGNM 196
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM------------- 50
II++G +D+ + L+ + + +G A VF + ++ +WN M
Sbjct: 140 IIKHGFESDRFISNSLVHMYASFGDISCARYVFDGMPVKNLVSWNSMVDGSAKCGNMVLA 199
Query: 51 ------------------IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
I +G A+++++ M +G +P++ T V+ AC
Sbjct: 200 RQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAHL 259
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM--RVRSVVSWTT 150
A++KG+ +H + + + ++L+D+Y KCG ++ +F + + V+ W
Sbjct: 260 GALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNA 319
Query: 151 MISGLAASG 159
MI GLA G
Sbjct: 320 MIGGLATHG 328
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+L L+D+ + G + A VF I V WN MI L G ++L L+ M
Sbjct: 282 VLCTSLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMN 341
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G +PD+ T+ ++ AC +++ K G + + + ++D+ + G +
Sbjct: 342 FVGVKPDEITYLSLLHACAHGGLVKEAWYFFDCLGKHGMTLKIEHYACIVDVMARAGQIA 401
Query: 132 GG--------RKMFDKMRVR 143
RK ++M VR
Sbjct: 402 KAYQFLSRNMRKAMERMGVR 421
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G ++ + L+D S G+ D A VF I + +W M+ + +A
Sbjct: 165 IFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEA 224
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ M GF+P+ FTF V KAC+ A + GK VHG A+K+ + D++V L+DL
Sbjct: 225 LKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDL 284
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y K GD+D R F+++ + V+ W+ MI+ A S
Sbjct: 285 YTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQS 319
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGSS 60
+I+ GL +D + L+D+ + G+ ++++ +F++ PH V WN +I G
Sbjct: 367 VIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAE--SPHRNDVTPWNTVIVGHVQLGDG 424
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL L+ M+ + + T+ ++AC + A+E G ++H L VK F +D+ V + L
Sbjct: 425 EKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNAL 484
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D+Y KCG + R +FD M + VSW MISG + G
Sbjct: 485 IDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 523
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLDL + G D A F +I V W+ MI S +A+ ++ M P+
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FTF V++AC + G ++H +K G D+FV + LMD+Y KCG ++ +F
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFA 400
Query: 139 KMRVRS-VVSWTTMISGLAASGDLDAA 164
+ R+ V W T+I G GD + A
Sbjct: 401 ESPHRNDVTPWNTVIVGHVQLGDGEKA 427
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L+A+ L+ + G + F F ++K ++ E G +H K G + FV + L
Sbjct: 121 LEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTAL 180
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+D Y CG VD R++FD + + +VSWT M++ A +
Sbjct: 181 IDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEN 218
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT---FPFVIKACIASLAIEKGKEVHGL 104
N +IR + G S+Q+ L + + P +F + ++ CI +GK +H
Sbjct: 6 NFLIR-FSRRGFSVQSAKLTQEFVGH-VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCE 63
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+K G D+F + L+++Y+K + K+FD+M R+ +S+ T+I G A S
Sbjct: 64 ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAES 117
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L +L + +G+ HA VF+++ VF+WN+M+ G +AL LY M+ G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD +TFP V++ C G+EVH ++ GF ++ V + L+ +Y KCGD+ R
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD M V +SW MI+G + + +A
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAG 282
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L Y K+ H A+ VF + V +W+ MI + S +AL + M+ + +P+
Sbjct: 440 LLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPN 498
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + AC A+ A+ GKE+H ++ G + +V + L+DLY+KCG F
Sbjct: 499 SVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFS 558
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ VVSW M+SG A G D A
Sbjct: 559 VHSEKDVVSWNIMLSGFVAHGLGDIA 584
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G ++ ++ L+ + + G A VF + +WN MI +
Sbjct: 223 VLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAG 282
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ N +P+ T V A + KE+HG AVK GF+ D+ ++L+ +
Sbjct: 283 LELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQM 342
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G + K+F +M + +SWT MISG +G D A
Sbjct: 343 YTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKA 383
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + D L+ + + G+ A +FS++ +W MI +G +AL
Sbjct: 325 VKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKAL 384
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y LM + PD T + AC ++ G ++H LA GF R + V + L+++Y
Sbjct: 385 EVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMY 444
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K +D ++F M + VVSW++MI+G
Sbjct: 445 AKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ ++ + LLDL G+T +A FS V +WN+M+ G A
Sbjct: 525 VLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIA 584
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L L+N M+ G PD+ TF ++ AC + + +G E+ H + K ++ + ++D
Sbjct: 585 LSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVD 644
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
L + G + + ++M ++ W +++G
Sbjct: 645 LLSRVGKLTEAYNLINRMPIKPDAAVWGALLNG 677
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+RAL G QAL L + + PD+ + + + C A++ G A
Sbjct: 71 LRALCSHGQLAQALWL---LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHP 127
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S + + + ++ + ++ G++ ++F KM R V SW M+ G G L+ A
Sbjct: 128 SFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEA 181
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQAL 64
L +D + L+ + +G D A +F + + +WN MI A + S A+
Sbjct: 131 LVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAI 190
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ +G RP++F F V+ AC S +E G++VHG V+ G+ +D+F + L+D+Y
Sbjct: 191 GVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMY 250
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K GD++ +F+KM VVSW ISG G
Sbjct: 251 SKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHG 285
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D L+D+ S G + A VF ++ V +WN I G +A
Sbjct: 231 VVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRA 290
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L M +G P+ FT V+KAC + A G+++HG VKA D FV L+D+
Sbjct: 291 LELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDM 350
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G +D RK+FD M R ++ W +ISG + G
Sbjct: 351 YAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDG 386
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL +D ++ L+D G+ D+A+ VF + R + + M+ AL+ A+
Sbjct: 437 KIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIK 496
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M+ G PD F ++ AC + A E+GK+VH +K F+ D+F + L+ Y
Sbjct: 497 LFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYA 556
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ F + R +VSW+ MI GLA G
Sbjct: 557 KCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHG 590
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D+ + L+D+ + +G D A VF + + WN +I + DG + L L++ M
Sbjct: 340 DEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMR 399
Query: 72 CNGFRPD--KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
G D + T V+K+ +S AI ++VH LA K G D V + L+D Y KCG
Sbjct: 400 KEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQ 459
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLA 156
+D K+F + R ++S TTM++ L+
Sbjct: 460 LDYAIKVFKESRSDDIISSTTMMTALS 486
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF +I P +W+ ++ A + +G ALL + M G ++F P V+K C
Sbjct: 56 ARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CAP 114
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM----RVRSVVS 147
+ G +VH LAV D+FV + L+ +Y G VD R+MFD+ R+ VS
Sbjct: 115 DVRF--GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVS 172
Query: 148 WTTMISG 154
W TMIS
Sbjct: 173 WNTMISA 179
>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
Length = 673
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 86/160 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL D L+ L+ G D A VF ++ +V +W+ +I AL G A+
Sbjct: 243 IRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRGRDAI 302
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M +G +P++ T V++AC ++ AI +G+ H GF + V + L+++Y
Sbjct: 303 ELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNMY 362
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG + R +FD M R+VVSWT M++G A G + A
Sbjct: 363 GKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEA 402
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 80/162 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G D + L+ + G + A F +I +V +WN MI AL G +
Sbjct: 38 RVVATGFDADVTVATALISALARCGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFAR 97
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL +Y M G +P ++ + +C +E+GK +H GF +FV + L++
Sbjct: 98 ALEIYRRMEPEGVKPSDISYIHALCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVN 157
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KC +D R+ F+++ + VVSW +MI+ + G D A
Sbjct: 158 MYSKCRRLDLAREAFERIDSKDVVSWNSMIAAHSQLGGSDEA 199
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
L+++ S + D A F +I V +WN MI A + G S +AL Y MI P
Sbjct: 155 LVNMYSKCRRLDLAREAFERIDSKDVVSWNSMIAAHSQLGGSDEALETYRRMIGEERLEP 214
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
K T + A ++ + K + A++ G D+ V S L+ KCG +D R +F
Sbjct: 215 TKITLVHALGAALSLRSAGDTKLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVF 274
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D+M R+VVSW+ +I+ LA G
Sbjct: 275 DRMERRNVVSWSGLIAALAEHG 296
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGK-----EVHGLAVKAGFSRDMFVQSTLMDLY 124
M +G RP+ F +++AC S EK E+ V GF D+ V + L+
Sbjct: 1 MELDGCRPNAVIFTRLLEACARS--PEKSDRSRLAEIQFRVVATGFDADVTVATALISAL 58
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CGD++G R+ FD++ ++VVSW +MI+ L G A
Sbjct: 59 ARCGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARA 98
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQ 62
II GLS + KL+ + ++ VF I +V+ WN +IRALT +G Q
Sbjct: 45 IITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQ 104
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL Y M +PD FTFP VI +C L +E G VH A++ GF D+++ + L+D
Sbjct: 105 ALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALID 164
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y + D+D R +F++M R VSW ++ISG ++G
Sbjct: 165 MYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNG 201
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + G +D + L+D+ S + D+A VF ++ +WN +I +G
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL +Y+ G PD FT V+ AC + +A+++G VHG+ K G + D+ + + L+
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLL 264
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K + R++F KM V+ V+W TMI G A G +A+
Sbjct: 265 SMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 80/157 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++G + ++ LLD+ + G+ D L VFS + + +WN +I +
Sbjct: 448 VIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ N M G PD+ T ++ C +GKE+HG K+GF ++ + + L+++
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEM 567
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ K+F M+ + VV+WT +IS G+
Sbjct: 568 YSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGE 604
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G++ D ++ LL + + + A VFS++ TWN MI G +
Sbjct: 248 IEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ MI +GF PD + I+AC S ++ GK VH + +GF D + L+D+
Sbjct: 308 VKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDM 366
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGD+ +++FD + + V+W ++I+G SG
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSG 402
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G D + L+D+ + G A VF +C TWN +I T G +
Sbjct: 348 LIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEG 407
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + +M +PD TF ++ I +G+ +H +K GF ++ + ++L+D+
Sbjct: 408 LESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDV 466
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y KCG++D K+F M ++SW T+I+
Sbjct: 467 YAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G ++ + L+++ S G ++ + VF ++ V TW +I A + G +A
Sbjct: 549 IFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKA 608
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L + M +G PD F I AC S +++G + + M + ++D
Sbjct: 609 LKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVD 668
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G + + M ++ S W ++S A G+ + A
Sbjct: 669 LLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIA 711
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ G D + +LDL YGK A LVF ++ +WN +I AL +
Sbjct: 380 VKSGFDVDVCVRNAILDL---YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYE 436
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ N M+ +G PD FT+ V+KAC ++E G VHG A+K+G D FV ST++
Sbjct: 437 DTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVV 496
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D+Y KCG + +K+ D++ + +VSW ++ISG +
Sbjct: 497 DMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFS 531
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I+ GL D + ++D+ G A + +I + +WN +I ++ S +
Sbjct: 479 KAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEE 538
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M+ G +PD FT+ V+ C IE GK++HG +K D ++ STL+D
Sbjct: 539 AQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVD 598
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG++ MF+K R VSW MI G A G
Sbjct: 599 MYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHG 635
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G TD A +F + P V +WN +I G ++ L M G D+ T ++
Sbjct: 99 GDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLL 158
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
K+C + G ++H LAVK G D+ S L+D+Y KC +D + F M R+ V
Sbjct: 159 KSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSV 218
Query: 147 SWTTMISG 154
SW I+G
Sbjct: 219 SWGAAIAG 226
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ S+D+++ ++D+ + G A F + +V T N M+ L G +A+
Sbjct: 279 IKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAM 338
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M +G D + V AC +G +VH LAVK+GF D+ V++ ++DLY
Sbjct: 339 QLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLY 398
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
KC + +F +M R VSW +I+ L
Sbjct: 399 GKCKALVEAYLVFQEMEQRDSVSWNAIIAAL 429
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 81 TFPFVIKACIAS--LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + + C ++ A+ G+ H + +GF FV + L+ +Y +CG +FD
Sbjct: 19 TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R VSW TM++ +GD D A
Sbjct: 79 TMPHRDTVSWNTMLTAYVHAGDTDTA 104
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL D VR L YGK D AL F + + +W I +
Sbjct: 178 VKTGLETD---VRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYT 234
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ + L+ M G + + ++C A + +++H A+K FS D V + ++
Sbjct: 235 RGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIV 294
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K G++ R+ F + +V + M+ GL +G
Sbjct: 295 DVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTG 332
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + D+ + L+D+ + G +LL+F + R +WN MI + G L+
Sbjct: 580 QIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLE 639
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL ++ M P+ TF V++AC
Sbjct: 640 ALEMFERMQRANVVPNHATFVAVLRAC 666
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCG 128
M+ +GF P F + C+ + G H V RD +T++ Y+ G
Sbjct: 45 MLVSGFMPTTF-----VSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAG 99
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D D +F M VVSW T+ISG G
Sbjct: 100 DTDTAASLFGTMPDPDVVSWNTLISGYCQHG 130
>gi|255558956|ref|XP_002520501.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540343|gb|EEF41914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 383
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G ++ L KLL L + G A + F + + +WN MI G
Sbjct: 33 QMVVVGYVANEYLKNKLLILYAKSGDLKTAHMFFDNLMDKSLISWNAMIAGYVQSGLEEI 92
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L LY M NG PD++TF +AC A ++ GK+ HG+ +K ++ V S L+D
Sbjct: 93 GLSLYYKMRQNGLTPDQYTFASAFRACAALATLQHGKKAHGVMIKCNLRENVVVNSALID 152
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC + G K F+K R++V+WT++ISG G
Sbjct: 153 MYFKCSSLTDGHKAFNKSVNRNIVTWTSLISGYGQHG 189
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
G+ +H V G+ + ++++ L+ LY K GD+ FD + +S++SW MI+G
Sbjct: 27 GRRIHAQMVVVGYVANEYLKNKLLILYAKSGDLKTAHMFFDNLMDKSLISWNAMIAGYVQ 86
Query: 158 SG 159
SG
Sbjct: 87 SG 88
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L+++ +G HA L F + + WN ++R L G +A+ Y+ M+ +G P
Sbjct: 72 QLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTP 131
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D +T+P V+KAC + A++ G+ VH + +++VQ ++D++ KCG V+ R+MF
Sbjct: 132 DNYTYPLVLKACSSLHALQLGRWVHE-TMHGKTKANVYVQCAVIDMFAKCGSVEDARRMF 190
Query: 138 DKMRVRSVVSWTTMISGLAASGD 160
++M R + SWT +I G +G+
Sbjct: 191 EEMPDRDLASWTALICGTMWNGE 213
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL +D ++ L+ + + G A +F + WN MI + G A
Sbjct: 360 VLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESA 419
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + RP+ T ++ C A+ +GKE+HG K+G ++ V ++L+D+
Sbjct: 420 FFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDM 479
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ G K+F +M VR+V ++ TMIS + G
Sbjct: 480 YSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQ 516
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 75/140 (53%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
++D+ + G + A +F ++ + +W +I +G L+ALLL+ M G PD
Sbjct: 173 VIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPD 232
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ AC A++ G + AV++GF D++V + ++D+Y KCGD ++F
Sbjct: 233 SVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFS 292
Query: 139 KMRVRSVVSWTTMISGLAAS 158
M VVSW+T+I+G + +
Sbjct: 293 HMVYSDVVSWSTLIAGYSQN 312
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G +D + ++D+ G A VFS + V +W+ +I + + ++
Sbjct: 260 VRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESY 319
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY MI G + V+ A +++GKE+H +K G D+ V S L+ +Y
Sbjct: 320 KLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMY 379
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
CG + +F+ + ++ W +MI G GD ++A
Sbjct: 380 ANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESA 419
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL + + L+D+ S G + VF Q+ +V T+N MI A G +
Sbjct: 461 VTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKG 520
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
L Y M G RP+K TF ++ AC + +++G ++ + G +M S ++D
Sbjct: 521 LAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVD 580
Query: 123 LYLKCGDVDGGRKMFDKM 140
L + GD+DG K +M
Sbjct: 581 LIGRAGDLDGAYKFITRM 598
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 86/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G +L+ L+D+ + GK D A++VFS++ V +W ++ + +GS +A
Sbjct: 67 IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M +G PD+ V+ AC ++ G+++H VK+G + V ++L+ +
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + + FD M R V+SWT +I G A +G
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNG 222
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN +I +G AL + M + D++T P V+ + + ++ VH L
Sbjct: 8 SWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLI 67
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K GF V + L+D+Y K G +D +F KM + VVSWT++++G + +G + A
Sbjct: 68 IKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + + L+ + + G A F + V +W +I +G +
Sbjct: 168 LVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHS 227
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFV 116
L Y+ MI G +PD TF ++ AC + + G+ +V+G +K G
Sbjct: 228 LQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYG--IKPGPEH---- 281
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ ++DL + G + + + ++M V V W +++ +L+
Sbjct: 282 YACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELE 328
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 90/159 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+ L LL+ + +C +D+A VFS I+ P+V +N MI+ ++ G L++
Sbjct: 27 LLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLES 86
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M G D++T+ ++K+C + + GK VHG ++ GF R ++ +++L
Sbjct: 87 LSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVEL 146
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y G + +K+FD+M R+VV W MI G SGD++
Sbjct: 147 YTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVE 185
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
L++R D G + L +F Q+ + +WN MI +L+ G +AL L+ MI
Sbjct: 172 NLMIRGFCD----SGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMID 227
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF-VQSTLMDLYLKCGDVD 131
GF PD+ T V+ + ++ GK +H A +G +D V + L+D Y K GD++
Sbjct: 228 QGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLE 287
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
+F KM+ R+VVSW T+ISG A +G
Sbjct: 288 AATAIFRKMQRRNVVSWNTLISGSAVNG 315
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
L+D G + A +F +++ +V +WN +I ++G + L++ MI G P
Sbjct: 276 LVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAP 335
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRK 135
++ TF V+ C + +E+G+E+ GL ++ F + + ++DL + G + K
Sbjct: 336 NEATFLGVLACCSYTGQVERGEELFGLMMER-FKLEARTEHYGAMVDLMSRSGRITEAFK 394
Query: 136 MFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
M V + + W +++S + GD+ A
Sbjct: 395 FLKNMPVNANAAMWGSLLSACRSHGDVKLA 424
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ + G A LVFS++R + +WN +I + + + +AL L+NL++
Sbjct: 431 DIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLL 490
Query: 72 CNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
F PD+ T V+ AC + A +KG+E+HG ++ G+ D V ++L+D+Y KCG +
Sbjct: 491 VEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FD + + +VSWT MI+G G
Sbjct: 551 LLARLLFDDITSKDLVSWTVMIAGYGMHG 579
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY K D A VF ++ V +WN +I +G + + L ++ M+ +G D
Sbjct: 236 LVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEID 295
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V C S I G+ VH VKA FSR+ +TL+D+Y KCGD+D + +F
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFR 355
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+M RSVVS+T+MI+G A G
Sbjct: 356 EMSGRSVVSYTSMIAGYAREG 376
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ S + LLD+ S G D A +VF ++ V ++ MI +G + +A+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAV 382
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD +T V+ C + +++GK VH + D+FV + LMD+Y
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMY 442
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG + +F +MRV+ ++SW T+I G + +
Sbjct: 443 AKCGSMREAELVFSEMRVKDIISWNTVIGGYSKN 476
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L KL + + G A VF Q++ WN+++ L G ++ L+ M+
Sbjct: 128 DSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM 187
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G D +TF V K+ + ++ G+++HG +K+GF V ++L+ YLK VD
Sbjct: 188 SSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVD 247
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
RK+FD+M R V+SW ++I+G ++G
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNG 275
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +R G+ A+ L L + + D T V++ C S +++ GKEV
Sbjct: 65 NTQLRRFCESGNLKNAVKL--LHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GF D + S L +Y CGD+ ++FD++++ + W +++ LA SGD +
Sbjct: 123 NGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGS 179
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +D+ + L+D+ + G A L+F I + +W +MI + G +A
Sbjct: 525 IMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEA 584
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ L+N M G PD+ +F ++ AC S +++G
Sbjct: 585 IALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEG 619
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ + D + L+D+ G A +F + + V TWN +I + T G +A
Sbjct: 417 IIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQ-RDVVTWNTLISSYTHSGHYAEA 475
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ MI P+ T V+ AC ++EKGK VH + GF ++ + + L+D+
Sbjct: 476 ITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDM 535
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ R++F+ M+ + V+SW MISG GD ++A
Sbjct: 536 YAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSA 576
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G +N+ + KL+ L + + K + VF F WN +I++ +G+ +A
Sbjct: 55 IITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNYFKA 114
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
Y M + P++FT P ++ C L +E+GK +HGL K+G F+ + V S+ +
Sbjct: 115 FDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVY 174
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+Y KCG ++ MFD++ VR VVSWT ++ G + D
Sbjct: 175 MYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDD 212
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL Q++ LL + S G + A F Q+ VF+W +I G + L
Sbjct: 262 VKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECL 321
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M + PD ++ S+ + +GK HGL V+ + D V + L+ +Y
Sbjct: 322 NLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMY 381
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G ++ K+FD + S SW TM+ G
Sbjct: 382 CKFGTLNPAEKLFDGVHEWSKESWNTMVFG 411
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS---LQALLLYNLMICNGFRPDKFTFP 83
G + A L+F +I V +W ++ + S L+ L + +G + + T
Sbjct: 180 GVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLE 239
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+AC A+ G+ +HGLAVK G VQS+L+ +Y KCG+V+ F ++ +
Sbjct: 240 GGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDK 299
Query: 144 SVVSWTTMISGLAASG 159
V SWT++I A G
Sbjct: 300 DVFSWTSVIGVCARFG 315
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q I G + L L+D+ + G+ + + +F+ ++ V +WN+MI + G +
Sbjct: 515 QYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDAN 574
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
A+ ++ M + +P+ TF ++ AC + +++GK++
Sbjct: 575 SAMEVFQQMEQSNVKPNAITFLSLLSACTHAGYVDEGKQL 614
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
VH +K D+ + ++L+D+Y K G++ KMF + + R VV+W T+IS SG
Sbjct: 413 VHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQ-RDVVTWNTLISSYTHSGH 471
Query: 161 LDAA 164
A
Sbjct: 472 YAEA 475
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
L + ++ +C+F +A L+F + V WN +R+ S A+ L+ +
Sbjct: 48 LPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREF 107
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
PD +T FV+KAC L + GK VHG K G +MF+Q+ ++ LY CG++
Sbjct: 108 DISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVA 167
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FDKM R V++W MI+ L GD + A
Sbjct: 168 RKVFDKMPQRDVITWNIMIARLVKMGDAEGA 198
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 80/138 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F+++ +V +W MI G S +A+ L+ M G P++ T V+
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVL 252
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC + G+ +H + ++G+ +++ V +TL+D+Y+KCG ++ ++FD M R+VV
Sbjct: 253 VACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVV 312
Query: 147 SWTTMISGLAASGDLDAA 164
SW+ MI+GLAA G + A
Sbjct: 313 SWSAMIAGLAAHGRAEDA 330
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + + L+D+ G + A +F + V +W+ MI L G + AL
Sbjct: 273 RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALA 332
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV------QST 119
L+N MI G +P+ TF ++ AC +EKG++ A +RD +
Sbjct: 333 LFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYF-----ASMTRDYGIVPRIEHYGC 387
Query: 120 LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
++DL+ + G + + M + + V W ++ G ++ A
Sbjct: 388 MVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLA 433
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQ 62
II GLS + KL+ + ++ VF I +V+ WN +IRALT +G Q
Sbjct: 45 IITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQ 104
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL Y M +PD FTFP VI +C L +E G VH A++ GF D+++ + L+D
Sbjct: 105 ALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALID 164
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y + D+D R +F++M R VSW ++ISG ++G
Sbjct: 165 MYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNG 201
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + G +D + L+D+ S + D+A VF ++ +WN +I +G
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL +Y+ G PD FT V+ AC + +A+++G VHG+ K G + D+ + + L+
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLL 264
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K + R++F KM V+ V+W TMI G A G +A+
Sbjct: 265 SMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 80/157 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++G + ++ LLD+ + G+ D L VFS + + +WN +I +
Sbjct: 448 VIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ N M G PD+ T ++ C +GKE+HG K+GF ++ + + L+++
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEM 567
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ K+F M+ + VV+WT +IS G+
Sbjct: 568 YSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGE 604
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G++ D ++ LL + + + A VFS++ TWN MI G +
Sbjct: 248 IEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ MI +GF PD + I+AC S ++ GK VH + +GF D + L+D+
Sbjct: 308 VKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDM 366
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGD+ +++FD + + V+W ++I+G SG
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSG 402
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G D + L+D+ + G A VF +C TWN +I T G +
Sbjct: 348 LIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEG 407
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + +M +PD TF ++ I +G+ +H +K GF ++ + ++L+D+
Sbjct: 408 LESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDV 466
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
Y KCG++D K+F M ++SW T+I+
Sbjct: 467 YAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G ++ + L+++ S G ++ + VF ++ V TW +I A + G +A
Sbjct: 549 IFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKA 608
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L + M +G PD F I AC S +++G + + M + ++D
Sbjct: 609 LKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVD 668
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G + + M ++ S W ++S A G+ + A
Sbjct: 669 LLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIA 711
>gi|302765755|ref|XP_002966298.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
gi|300165718|gb|EFJ32325.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
Length = 644
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I GL +D + L+++ + +G A VFSQI V +WN ++ A + QA
Sbjct: 258 IRERGLESDVGVGTSLVNMYARWGDPQQAQEVFSQIEARDVSSWNCLLAAYSRCSRQEQA 317
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+LY M+ G +PD+ T VI C + +E+G +H +GF+ D+ + + L+
Sbjct: 318 LVLYREMMLEGVKPDRLTLNTVIDVCASLKDLEQGSRIHQQIASSGFASDLMLDTALITF 377
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG +D ++F+ + R V+W TMI+ L +AA
Sbjct: 378 YGRCGKLDAALEIFEALPARDNVTWNTMIASLNDHSSPEAA 418
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
W +MI A G +ALLL+ + G RP + TF ++ AC ++++GK++H L
Sbjct: 96 WTVMISAYVRRGWINEALLLFKKSLLEGVRPSEGTFIALLHACSRPASLDQGKKLHRLLE 155
Query: 107 KAGFSRDMF--VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+AGF + + ++L+ +Y KCG +D K+ +K+ R V WT MI+ L+ G LD A
Sbjct: 156 EAGFQESIAPSLATSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRA 215
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+I G ++D +L L+ GK D AL +F + TWN MI +L S
Sbjct: 357 QQIASSGFASDLMLDTALITFYGRCGKLDAALEIFEALPARDNVTWNTMIASLNDHSSPE 416
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ + M G P + T V+ C + + + K VH ++GF +D V++TL+
Sbjct: 417 AAMGFFQRMQQEGMAPSRVTLLTVLGLCGS---VGEAKLVHSCVRESGFEQDSEVKNTLI 473
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG + ++F+ + + SW M+ AA G AA
Sbjct: 474 TAYGRCGGLAQAVEIFEALPRKIESSWNAMMGAYAAQGKPRAA 516
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L YGK D A V +I V W +MI +L+ G +A L M G RP
Sbjct: 171 LIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPS 230
Query: 79 KFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
K TF V++AC A + G +HGL + G D+ V ++L+++Y + GD +++F
Sbjct: 231 KMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDPQQAQEVF 290
Query: 138 DKMRVRSVVSWTTMISG 154
++ R V SW +++
Sbjct: 291 SQIEARDVSSWNCLLAA 307
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 95 IEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTM 151
+E G+ +H +A S+ V L+ +Y++CG ++ RK+FD M V R+ WT M
Sbjct: 40 LEAGERIHCVASCLNLVESKRKRVGVALLGMYVRCGSIESARKLFDSMAVERNGECWTVM 99
Query: 152 ISGLAASGDLDAA 164
IS G ++ A
Sbjct: 100 ISAYVRRGWINEA 112
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 76/137 (55%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
S +G +A +FS P++F WN +IR +I S + A+ LY M G P+ +TF
Sbjct: 12 SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
FV+ AC L + +G+E+H VKAG + + + L+ LY CG +D MFD+M
Sbjct: 72 FVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEP 131
Query: 144 SVVSWTTMISGLAASGD 160
SW+TM+SG + +G
Sbjct: 132 DSASWSTMVSGYSQNGQ 148
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ GL + L+ L+ L + G D+A ++F ++ P +W+ M+ + +G +++
Sbjct: 92 QIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVE 151
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L M D FT V+ C ++ GK VH K G D+ + + L+
Sbjct: 152 TLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVG 211
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D K+F M R V +W+ MI+G A G + A
Sbjct: 212 MYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKA 253
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D +L L+ + S G D+AL VF + V TW++MI I G +A
Sbjct: 194 IDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKA 253
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L L++ M + P+ TF V+ A S +EKG ++ + + + + ++D
Sbjct: 254 LQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVD 313
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASG 159
L+ + G V K M + +VV W T++ G
Sbjct: 314 LFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 351
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ GL +D KL+ + + +A + ++I P+ FT N +IRA +
Sbjct: 32 MLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIRAYANSSTP 91
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL ++ M+ PDK++F FV+KAC A E+G+++HGL +K+ D+FV++TL
Sbjct: 92 EIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTL 151
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++Y + G + RK+ D+M VR VSW +++S G ++ A
Sbjct: 152 INVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEA 195
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFV 85
G A VF + V +WN M+ A G + L ++N+M+ + RPD FT V
Sbjct: 221 GLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNV 280
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + ++ +G+ VH K G + FV + L+D+Y KCG +D ++F R V
Sbjct: 281 LSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDV 340
Query: 146 VSWTTMISGLAASG 159
+W ++I+GL+ G
Sbjct: 341 STWNSIITGLSVHG 354
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++G+ + + L+D+ S GK D AL VF V TWN +I L++ G A
Sbjct: 300 IDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDA 359
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L +++ M+ GF+P+ TF V+ AC
Sbjct: 360 LEIFSEMVYEGFKPNGITFIGVLSAC 385
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ D LV + + + + F+Q+ P+VF +N MI+ G +A
Sbjct: 62 MIKTNAIQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRA 121
Query: 64 LLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L Y +++ + P +TF ++KAC A+E G+ VH K GF +FVQ+ L+D
Sbjct: 122 LQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVD 181
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K + RK+FD+M R +WT M+S LA GD+D+A
Sbjct: 182 FYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSA 223
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A L+F+Q+ + +W MI + + AL +Y+ M NG PD+ T V
Sbjct: 249 GNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVA 308
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E GKE+H + G + D+++ S L+D+Y KCG +D +F K+ +++
Sbjct: 309 SACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLY 368
Query: 147 SWTTMISGLAASGDLDAA 164
W +I GLA G + A
Sbjct: 369 CWNAVIEGLAVHGYAEKA 386
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ GL+ D + L+D+ + G D +LL+F ++ +++ WN +I L + G + +A
Sbjct: 327 VMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKA 386
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMD 122
L ++ +M P+ TF ++ AC + +++G+ + D+ ++D
Sbjct: 387 LRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVD 446
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ K G ++ ++ M + + W +++G G+ + A
Sbjct: 447 MLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIA 489
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + KL+ L +G T A LVF QI P + W +++R ++ S + + Y
Sbjct: 83 GLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFY 142
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+L++ +GF D F +KAC ++ GK++H VK S D V + L+D+Y KC
Sbjct: 143 DLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVP-SFDNVVLTGLLDMYAKC 201
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
G++ K+F+ + +R+VV WT+MI+G
Sbjct: 202 GEIKSSYKVFEDITLRNVVCWTSMIAG 228
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 82/155 (52%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S D +++ LLD+ + G+ + VF I +V W MI + + L+L+N
Sbjct: 185 SFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNR 244
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M N +++T+ ++ AC A+ +GK HG +K+G + ++L+D+Y+KCGD
Sbjct: 245 MRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGD 304
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R++F++ +V WT MI G +G ++ A
Sbjct: 305 ISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 339
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC-- 89
A VF + WN +I + +GS +AL L++ M P+ T + AC
Sbjct: 408 AKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACAS 467
Query: 90 IASLAIEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
+ SLAI G +H +VK GF S + V + L+D Y KCGD + R +FD + ++ ++
Sbjct: 468 LGSLAI--GSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTIT 525
Query: 148 WTTMISGLAASGD 160
W+ MI G GD
Sbjct: 526 WSAMIGGYGKQGD 538
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G+ LV LLD+ G +A VF++ + W MI T +GS +A
Sbjct: 280 LIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 339
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G +P+ T V+ C +E G+ +HGL++K G D V + L+ +
Sbjct: 340 LSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDTNVANALVHM 398
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC + +F+ + +V+W ++ISG + +G + A
Sbjct: 399 YAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEA 439
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD + G + A L+F I + TW+ MI G + +L L+ M+ +P+
Sbjct: 498 LLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPN 557
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF V+ AC + + +GK+ K F+ + ++D+ + G+++ +
Sbjct: 558 ESTFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDII 617
Query: 138 DKMRVRSVV 146
+KM ++ V
Sbjct: 618 EKMPIQPDV 626
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 90/161 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I L + L KL+ + G+ + +F +I +V +N+MIR+ +G A
Sbjct: 62 LIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDA 121
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL++ M GF PD +T+P V+KAC S + G ++HG VK G ++++ + L+ +
Sbjct: 122 LLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSM 181
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC +D R++ D+M R +VSW +M++G A +G + A
Sbjct: 182 YGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDA 222
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F +++ + +WN+MI + +A+ LY M +G PD + V+ AC A
Sbjct: 262 MFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSA 321
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
G+ +H + ++ +++ L+D+Y KCG + R +FD+M R VVSWT+MIS
Sbjct: 322 AVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISA 381
Query: 155 LAASG 159
SG
Sbjct: 382 YGMSG 386
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 1/164 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + R L + LL L+D+ + G A VF Q+ V +W MI A + G
Sbjct: 330 EYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGK 389
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M +GF PD F V+ AC + +++G+ L + G + + + ++
Sbjct: 390 DAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMV 449
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + G +D + +M + W +++S ++ A
Sbjct: 450 DLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIA 493
>gi|302818269|ref|XP_002990808.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
gi|300141369|gb|EFJ08081.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
Length = 484
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ + D ++ LL + + G + HA VF + +V TWN +++A + G +AL
Sbjct: 172 LEQAVQTDVVVCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYALQGEFGEAL 231
Query: 65 LLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ L +PD+ TF I C +E+G+ +H V +G D+ + +TL+++
Sbjct: 232 ALFQRLEAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLVNM 291
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V R +FDKM VR VV+W+++++ A++G
Sbjct: 292 YGKCGQVGTARGLFDKMVVRDVVTWSSLLATYASNG 327
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 71/133 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A F++I P++++W ++I A +G +AL+ ++ M G + + TF I
Sbjct: 6 GSLPEAWDCFARIALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGIKANAITFVVAI 65
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC +GK +H V GF V ++L+ +Y KC D+D + F++++ + VV
Sbjct: 66 NACAMLGDPRRGKALHDFLVPCGFFDSSLVGNSLIHMYGKCRDLDAAKSAFNELKKKDVV 125
Query: 147 SWTTMISGLAASG 159
+W ++IS A +G
Sbjct: 126 TWNSIISAYAQNG 138
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L YGK D A F++++ V TWN +I A +G +AL LYN M + PD
Sbjct: 99 LIHMYGKCRDLDAAKSAFNELKKKDVVTWNSIISAYAQNGRGKEALELYNDM---DWTPD 155
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K T+ I+AC +S +E+ + D+ V +TL+ +Y KCG R +F+
Sbjct: 156 KITYVGAIEACASSQDLEQAVQT-----------DVVVCNTLLSMYAKCGASAHARAVFE 204
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R+V++W ++ A G+ A
Sbjct: 205 SMSRRNVITWNGIMKAYALQGEFGEA 230
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
L + ++ +C+F +A L+F + V WN +R+ S A+ L+ +
Sbjct: 47 SLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLRE 106
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
PD +T FV+KAC L + GK VHG K G +MF+Q+ ++ LY CG++
Sbjct: 107 FDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGV 166
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FDKM R V++W MI+ L GD + A
Sbjct: 167 ARKVFDKMPQRDVITWNIMIARLVKMGDAEGA 198
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 80/138 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F+++ +V +W MI G S +A+ L+ M G P++ T V+
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVL 252
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC + G+ +H + ++G+ +++ V +TL+D+Y+KCG ++ ++FD M R+VV
Sbjct: 253 VACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVV 312
Query: 147 SWTTMISGLAASGDLDAA 164
SW+ MI+GLAA G + A
Sbjct: 313 SWSAMIAGLAAHGRAEDA 330
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + + L+D+ G + A +F + V +W+ MI L G + AL
Sbjct: 273 RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALA 332
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV------QST 119
L+N MI G +P+ TF ++ AC +EKG++ A +RD +
Sbjct: 333 LFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYF-----ASMTRDYGIVPRIEHYGC 387
Query: 120 LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
++DL+ + G + + M + + V W ++ G ++ A
Sbjct: 388 MVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLA 433
>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G ++ ++ L+DL + D A +F ++ P W +I A T + +AL +
Sbjct: 183 GFHSNHVIGSALIDLYGRNYELDDARRLFDELLEPDAICWTSVISAYTRNDMYDKALGFF 242
Query: 68 NLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
LM G PD FTF V+ AC +++GKEVH + +GFS ++ V+S+L+D+Y K
Sbjct: 243 YLMQRKLGLAPDGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSGNVVVESSLVDMYGK 302
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
CG VD +++FD+M V++ VSW+ ++ G +GD ++
Sbjct: 303 CGLVDESQRVFDRMSVKNSVSWSALLGGFCQNGDFES 339
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K+I G S + ++ L+D+ G D + VF ++ + +W+ ++ +G
Sbjct: 280 KLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMSVKNSVSWSALLGGFCQNGDFES 339
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ M G D ++F V++AC A+ +GKEVH V+ G RD+ ++S L+D
Sbjct: 340 VIRIFREM---GEADDLYSFGTVLRACAGLAAVRQGKEVHCQYVRRGGWRDVIIESALVD 396
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG +D ++F KM VR++++W +MI G A +G + A
Sbjct: 397 LYAKCGCIDFAHRIFTKMTVRNLITWNSMICGFAQNGWAEEA 438
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+++ GL D+ + LL L F TD VF + V +W MI
Sbjct: 77 VVKSGLETDRFVGNSLLAL-YFKLSTDFFETRRVFDGLYFRDVISWTSMITGYVKGEKPK 135
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L+ M+ G P+ FT VIKAC + GK H + + GF + + S L+
Sbjct: 136 KALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHSNHVIGSALI 195
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DLY + ++D R++FD++ + WT++IS + D A
Sbjct: 196 DLYGRNYELDDARRLFDELLEPDAICWTSVISAYTRNDMYDKA 238
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 40 RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-----FTFPFVIKACIASLA 94
C + ++NL + + I G LL+ L I N + F + +++ C ++
Sbjct: 7 HCSSLPSFNLKNKEIKIIGFCKSGALLHALDILNSIDSREISNKPFIYASLLQTCTKVVS 66
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG-DVDGGRKMFDKMRVRSVVSWTTMIS 153
G ++H VK+G D FV ++L+ LY K D R++FD + R V+SWT+MI+
Sbjct: 67 FNHGLQIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFDGLYFRDVISWTSMIT 126
Query: 154 G 154
G
Sbjct: 127 G 127
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ +R G D ++ L+DL + G D A +F+++ ++ TWN MI +G + +
Sbjct: 378 QYVRRGGWRDVIIESALVDLYAKCGCIDFAHRIFTKMTVRNLITWNSMICGFAQNGWAEE 437
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL +++ M+ G +PD TF V+ AC
Sbjct: 438 ALRIFDEMVKEGTKPDYITFIGVLFAC 464
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 6/151 (3%)
Query: 8 GLSNDQLLVRKLL--DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL D+ + KL+ + S G ++A +F+ I P +F +NLMI+A GS A+
Sbjct: 35 GLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAIS 94
Query: 66 LYNLMICNGFRPDKFTFPFVIK--ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ + +G PD +T+P+V+K CI + +G++VH VK G D +V ++ MD+
Sbjct: 95 LFQQLREHGVWPDNYTYPYVLKGIGCIGE--VREGEKVHAFVVKTGLEFDPYVCNSFMDM 152
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y + G V+G ++F++M R VSW MISG
Sbjct: 153 YAELGLVEGFTQVFEEMPDRDAVSWNIMISG 183
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + +D+ + G + VF ++ +WN+MI +A
Sbjct: 134 VVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEA 193
Query: 64 LLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y M + +P++ T + AC +E GKE+H + + + + L+D
Sbjct: 194 VDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDY-IASELDLTTIMGNALLD 252
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V R++FD M V++V WT+M++G G LD A
Sbjct: 253 MYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQA 294
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A +F + + W MI + + L+ M G +PDKF ++
Sbjct: 289 GQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLL 348
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
C S A+E+GK +H + D V + L+++Y KCG ++ ++F+ ++ +
Sbjct: 349 TGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTT 408
Query: 147 SWTTMISGLAASGDLDAA 164
SWT++I GLA +G A
Sbjct: 409 SWTSIICGLAMNGKPSEA 426
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+++ + G + + +F+ ++ +W +I L ++G +AL L+ M
Sbjct: 375 DAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQ 434
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G +PD TF V+ AC + +E+G+++ H ++ ++ +DL + G +
Sbjct: 435 TCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLL 494
Query: 131 DGGRKMFDKMRVRS----VVSWTTMISGLAASGDLD 162
++ K+ ++ V + ++S G++D
Sbjct: 495 QEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNID 530
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQ----LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
Q++ Y L N + L+D+ + G+ D + +FS+I TWN MI + +
Sbjct: 469 QELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQN 528
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G +AL L+ M G + T V+ AC + AI GKE+HG+ +K D+F +
Sbjct: 529 GEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAE 588
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
S L+D+Y KCG+++ ++F+ M ++ VSW ++I+ A G
Sbjct: 589 SALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYG 630
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R + D LV L+D+ A V+ + V + MI ++G S +A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ ++ G RP+ V+ AC + A++ G+E+H A+K + +V+S LMD+
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDM 493
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +D +F K+ + V+W +MIS A +G+ + A
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEA 534
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLL 66
+ D L +L+ + + A+ VFS + WN +IR LT+ G ALL
Sbjct: 72 ATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLF 131
Query: 67 YNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y M + P D TFP+V+K+C A AI G+ VH A G DMFV S L+ +Y
Sbjct: 132 YLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMY 191
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + R++FD M R V W M+ G +G + +A
Sbjct: 192 ANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSA 231
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++YGL ++ + L+ + + D +F + + TWN MI +G QAL
Sbjct: 274 VKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQAL 333
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LL+ M +G RPD T ++ A +GKE+HG V+ D+F+ S L+D+Y
Sbjct: 334 LLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIY 393
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC V + ++D + VV +TMISG +G
Sbjct: 394 FKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNG 428
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+ + + G A VF + WN+M+ GS A+ L+
Sbjct: 176 GLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELF 235
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEK-----GKEVHGLAVKAGFSRDMFVQSTLMD 122
M +G P+ F AC S++ + G ++H LAVK G ++ V +TL+
Sbjct: 236 GDMRASGCEPN-----FATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVS 290
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KC +D G K+F M +V+W MISG +G +D A
Sbjct: 291 MYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQA 332
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ + D L+D+ G + A VF + + +WN +I + G ++
Sbjct: 576 VIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKES 635
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ L M GF+ D TF ++ AC + +++G + + + + M + ++D
Sbjct: 636 VSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVD 695
Query: 123 LYLKCGDVDGGRKMFDKM 140
LY + G +D ++ M
Sbjct: 696 LYSRAGKLDKAMELIVDM 713
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL +D+++ L D+ G + A +F ++ + TW MI DG +
Sbjct: 229 IMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEG 288
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ ++ +G RP++FTF V+ AC + E GK+VHG + GF F S L+ +
Sbjct: 289 FDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHM 348
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG++ ++F + + SWT++I+G A +G D A
Sbjct: 349 YSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEA 389
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 21 DLCSF------YGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
DLCS+ Y K A +F ++ F+W MI +AL L+ +M
Sbjct: 135 DLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMK 194
Query: 72 -CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ + +KFT + A A + GKE+HG ++ G D V S L D+Y KCG +
Sbjct: 195 RSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSI 254
Query: 131 DGGRKMFDKMRVRSVVSWTTMI 152
+ R +FDKM R +V+WT MI
Sbjct: 255 EEARHIFDKMVDRDIVTWTAMI 276
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+P + +I++CI S +++GK+VH +GF +F+ + L+++Y KC + +K
Sbjct: 67 KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R + SW +ISG A G L A
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEA 155
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G L+ + S G A VF + P +F+W +I +G +A
Sbjct: 330 MTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEA 389
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ + L++ +G +PD TF V+ AC + ++KG + H + + G + + ++D
Sbjct: 390 IRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIID 449
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
L + G D + KM ++ W +++ G G+L A
Sbjct: 450 LLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLA 492
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YG+ D A +F ++ V TW+ +I + + G S ALLLY+ M+ G +P+
Sbjct: 461 LISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPN 520
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T VI +C A+E G+ +H G D+ + + L+D+Y+KCG + RKMFD
Sbjct: 521 SATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFD 580
Query: 139 KMRVRSVVSWTTMISGLAASGD 160
M R VV+W MISG G+
Sbjct: 581 SMLERDVVTWNVMISGYGMHGE 602
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
CP F WN ++R+ L + M +G RP +FT P V A A+ G
Sbjct: 69 CPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128
Query: 101 VHGLAVKAGF---SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
VH +V+ G + V S+L+ +Y +CG V ++FD+M R VV+WT +ISG
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188
Query: 158 SG 159
+G
Sbjct: 189 NG 190
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+R+GL V L Y G A+ +F ++ V W +I +G
Sbjct: 134 VRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCG 193
Query: 62 QALLLYNLMICN----GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ L M+ + G RP+ T ++AC + G +HG VKAG V
Sbjct: 194 EGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVV 253
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+L +Y KC + R +F ++ + +VSWT++I +G + A
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKA 300
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ + +V L + + T+ A ++F ++ + +W +I A G + +A+
Sbjct: 242 VKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAV 301
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M +G +PD+ ++ + GK H V+ F + + + L+ +Y
Sbjct: 302 ELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMY 361
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC VD +F + R SW++M+ +G
Sbjct: 362 AKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAG 396
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+D+ G+ A +F + V TWN+MI + G ++QAL L+
Sbjct: 551 GLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLF 610
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
++M +P+ TF ++ AC + ++KG+E+ + ++ + ++DL K
Sbjct: 611 SMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKS 670
Query: 128 GDVDGGRKMFDKMRVR 143
G + + M +
Sbjct: 671 GHLQEAEDVVSAMPIE 686
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R + L+ L+ + + + D A VF + +W+ M+ A G L+
Sbjct: 342 IVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKC 401
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLA-------IEKGKEVHGLAVKAGFSRDMFV 116
L LY M FR DK F + + I+ ++ + G+ H ++K + V
Sbjct: 402 LELYREM---QFR-DKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSV 457
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ L+ +Y +CG+ D RK+F ++ + VV+W+ +IS + G
Sbjct: 458 ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLG 500
>gi|297745258|emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHV---FTWNLMIRALTIDGSSLQALLLYNLMICN-G 74
L S YG+ ++A VF ++R V +WN ++ A G S++A+ ++ M + G
Sbjct: 167 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 226
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD + V+ AC + A +GK+VHG A+++G D+FV + ++D+Y KCG ++
Sbjct: 227 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 286
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+F++M+V+ VVSW M++G + G D A
Sbjct: 287 KVFERMKVKDVVSWNAMVTGYSQIGRFDDA 316
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
VF WN +IR G L LY M G+RPD +TFPFV+KAC + G VH
Sbjct: 91 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV---VSWTTMISGLAASGD 160
+ +GF ++FV + L+ +Y +CG + R++FD+MR R V VSW ++++ GD
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL D + ++D+ + G + A VF +++ V +WN M+ + G AL
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 317
Query: 65 LLYNLMICNGFR--PDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
L+ + P+ T ++ C + + GKE H A+K
Sbjct: 318 GLFEKIREEKIELNPNVVTLVSLLSGCALAGTLLHGKETHCHAIK 362
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 86/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+ +D+ + L+ L S G+ + A VF ++ V +W +I + ++A
Sbjct: 127 VFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEA 186
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ MI NG P++ T V++AC + A+ G+ +H + FS + V + L+D+
Sbjct: 187 IRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDM 246
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +DG ++FD+ + V WT +I+GLA+ G
Sbjct: 247 YAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHG 282
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 8/136 (5%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-------FRPDK 79
G ++A + + P+ F +N MIRA + +A L+ L + N RPD
Sbjct: 43 GDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLF-LYMQNPDDASVAVPRPDH 101
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
FT+PFV+KAC S GK++HGL K+G D ++ + L+ LY G+ + K+FDK
Sbjct: 102 FTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDK 161
Query: 140 MRVRSVVSWTTMISGL 155
M R VVSWT++I G
Sbjct: 162 MPDRDVVSWTSIIDGF 177
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDG 58
+++I G D + L+D+ YGK H A+ +F Q+ V WN MI + G
Sbjct: 231 EELINSGFLLDSFISSALVDM---YGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKG 287
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ + L+ M G +P T +I C S + +GK VHG ++ D+FV S
Sbjct: 288 DIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNS 347
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+LMDLY KCG V+ K+F + VVSW MISG A G L A
Sbjct: 348 SLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEA 393
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR + D + L+DL GK + A +F I V +WN+MI +G +AL
Sbjct: 335 IRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEAL 394
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M + D TF V+ AC A+EKGKE+H L ++ + V L+D+Y
Sbjct: 395 GLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMY 454
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG VD +F + R +VSWT+MI+ + G
Sbjct: 455 AKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHG 489
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 6/161 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+ GL D ++ L+ + YGK + A+ +F+++ V WN +I G+
Sbjct: 132 LIKTGLMMDIVVGSSLVGM---YGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL + LM GF P+ T I +C L + +G E+H + +GF D F+ S L
Sbjct: 189 KDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSAL 248
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+D+Y KCG ++ ++F++M ++VV+W +MISG GD+
Sbjct: 249 VDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDI 289
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTID 57
QK++ GL ND L + L++ C Y DHA VF + P + WN ++ T +
Sbjct: 27 QKVVTLGLQNDIFLCKTLINQYLSCHLY---DHAKCVFDNMENPCEISLWNGLMAGYTKN 83
Query: 58 GSSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
++AL L+ ++ + +PD +T+P V KAC GK +H +K G D+ V
Sbjct: 84 YMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVV 143
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+L+ +Y KC + +F++M + V W T+IS SG+ A
Sbjct: 144 GSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDA 191
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++AC+ S ++++GK +H V G D+F+ TL++ YL C D + +FD M
Sbjct: 9 LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPC 68
Query: 145 VVS-WTTMISG 154
+S W +++G
Sbjct: 69 EISLWNGLMAG 79
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II L N+++++ LLD+ + G D A VF + + +W MI A G + A
Sbjct: 435 IIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGA 494
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ M+ + +PD+ F ++ AC + +++G
Sbjct: 495 LELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEG 529
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQI--RCPHVFTWNLMIRALTIDG 58
I++Y +++D + LL +FYGK + ++FS++ R V +WN MI G
Sbjct: 685 ILKYSVADDNAIENALL---AFYGKCEQMEDCEIIFSRMSERRDEV-SWNSMISGYLHSG 740
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+A+ L M+ G + D FTF V+ AC + +E+G EVH AV+A D+ V S
Sbjct: 741 ILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGS 800
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG +D + F+ M VR++ SW +MISG A G
Sbjct: 801 ALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHG 841
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G ++D L+++ G A +F ++ ++ +W+ +I T + +
Sbjct: 165 QLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDE 224
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A L+ +I +G P+ F ++AC S I+ G ++H K DM + + L
Sbjct: 225 ACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVL 284
Query: 121 MDLYLKC-GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
M +Y C G +D ++FD+++ R+ V+W ++IS GD +A
Sbjct: 285 MSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSA 329
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSLQAL 64
++GL D + LL L + + VF Q+ +WN I AL + S LQAL
Sbjct: 585 KWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQAL 644
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M+ G+RP++ TF ++ A + + G ++H L +K + D +++ L+ Y
Sbjct: 645 KYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFY 704
Query: 125 LKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
KC ++ +F +M R VSW +MISG SG L A
Sbjct: 705 GKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKA 745
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + YGK D+A VF + +WN MI L + +A+ ++ M NG P
Sbjct: 497 LVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPS 556
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F+ + +C + + G+++HG K G D+ V + L+ LY + ++ +K+F
Sbjct: 557 NFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFF 616
Query: 139 KMRVRSVVSWTTMISGLA 156
+M VSW + I LA
Sbjct: 617 QMPEYDQVSWNSFIGALA 634
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG----FRPDKFTF 82
G D A VF +I+ + TWN +I G ++ A L+++M G RP+++T
Sbjct: 293 GSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTL 352
Query: 83 -PFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
V AC +A + +++ K+GF RD++V S L++ + + G +D + +F +M
Sbjct: 353 CSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQM 412
Query: 141 RVRSVVSWTTMISGLA 156
R+ V+ ++ GLA
Sbjct: 413 YDRNAVTMNGLMVGLA 428
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R L +D ++ L+D+ + GK D+A F + ++++WN MI G +AL
Sbjct: 788 VRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKAL 847
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M +G PD TF V+ AC +++G K + G S + S ++DL
Sbjct: 848 KIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDL 907
Query: 124 YLKCGDV 130
+ GDV
Sbjct: 908 LGRAGDV 914
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
S ++ +H K GF+ D+F +TL+++Y++ G++ RK+FD+M +++VSW+ +
Sbjct: 153 SSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCL 212
Query: 152 ISGLAASGDLDAA 164
ISG + D A
Sbjct: 213 ISGYTQNRMPDEA 225
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 97 KGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
KG+EVH ++G + + + L+++Y KC +D +F M + VSW +MISGL
Sbjct: 473 KGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGL 532
Query: 156 AASGDLDAA 164
+ + A
Sbjct: 533 DHNERFEEA 541
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQ----LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID 57
Q++ Y L N + L+D+ + G+ D + +FS+I TWN MI + +
Sbjct: 469 QELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQN 528
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G +AL L+ M G + T V+ AC + AI GKE+HG+ +K D+F +
Sbjct: 529 GEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAE 588
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
S L+D+Y KCG+++ ++F+ M ++ VSW ++I+ A G
Sbjct: 589 SALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYG 630
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R + D LV L+D+ A V+ + V + MI ++G S +A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ ++ G RP+ V+ AC + A++ G+E+H A+K + +V+S LMD+
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDM 493
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +D +F K+ + V+W +MIS A +G+ + A
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEA 534
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLL 66
+ D L +L+ + + A+ VFS + WN +IR LT+ G ALL
Sbjct: 72 ATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLF 131
Query: 67 YNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y M + P D TFP+V+K+C A AI G+ VH A G DMFV S L+ +Y
Sbjct: 132 YLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMY 191
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + R++FD M R V W M+ G +G + +A
Sbjct: 192 ANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSA 231
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++YGL ++ + L+ + + D +F + + TWN MI +G QAL
Sbjct: 274 VKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQAL 333
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LL+ M +G RPD T ++ A +GKE+HG V+ D+F+ S L+D+Y
Sbjct: 334 LLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIY 393
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC V + ++D + VV +TMISG +G
Sbjct: 394 FKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNG 428
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+ + + G A VF + WN+M+ GS A+ L+
Sbjct: 176 GLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELF 235
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEK-----GKEVHGLAVKAGFSRDMFVQSTLMD 122
M +G P+ F AC S++ + G ++H LAVK G ++ V +TL+
Sbjct: 236 GDMRASGCEPN-----FATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVS 290
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KC +D G K+F M +V+W MISG +G +D A
Sbjct: 291 MYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQA 332
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ + D L+D+ G + A VF + + +WN +I + G ++
Sbjct: 576 VIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKES 635
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ L M GF+ D TF ++ AC + +++G + + + + M + ++D
Sbjct: 636 VSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVD 695
Query: 123 LYLKCGDVDGGRKMFDKM 140
LY + G +D ++ M
Sbjct: 696 LYSRAGKLDKAMELIVDM 713
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 84/159 (52%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+R G+ ++ L L+++ G A VF R + +WN MI GS
Sbjct: 510 EDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYE 569
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L+ M G PDK TF V+ C A+E G+++H L +++G D+ + + L+
Sbjct: 570 AAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALI 629
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++Y++CG + ++F +R R+V+SWT MI G A G+
Sbjct: 630 NMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGE 668
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II GL D L L+++ G A VF +R +V +W MI G +A
Sbjct: 613 IIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKA 672
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M +GF+P K TF ++KAC++S +++GK+V + +G+ D V + L+
Sbjct: 673 FELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISA 732
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G + RK+FDKM R ++SW MI+G A +G
Sbjct: 733 YSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNG 768
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G+ D L L+++ A VF ++ V +WN +I G +
Sbjct: 107 QMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKK 166
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L+ M GF P K T+ ++ AC + +E GK++H ++AG+ RD VQ++L++
Sbjct: 167 AFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLN 226
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+Y KC D+ R++F + R VVS+ TM+
Sbjct: 227 MYGKCEDLPSARQVFSGIYRRDVVSYNTML 256
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G S+D + L+ + + G A +F+ + + +WN +I +A
Sbjct: 411 ISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEA 470
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LY M G +P + TF ++ AC S A GK +H +++G + + + LM++
Sbjct: 471 MKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNM 530
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG + + +F+ R R ++SW +MI+G A G +AA
Sbjct: 531 YRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAA 571
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ G D + L+ S G A VF ++ + +WN MI +G A
Sbjct: 714 ILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTA 773
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L M G +KF+F ++ AC + A+E+GK VH VK D+ V + L+ +
Sbjct: 774 LQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISM 833
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ +++FD ++VV+W MI+ A G
Sbjct: 834 YAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHG 869
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 6/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
KII G D + LL++ YGK + A VFS I V ++N M+
Sbjct: 208 KIIEAGYQRDPRVQNSLLNM---YGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAY 264
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ + L+ M G PDK T+ ++ A +++GK +H LAV G + D+ V +
Sbjct: 265 VEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTA 324
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L ++++CGDV G ++ + R VV + +I+ LA G + A
Sbjct: 325 LATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEA 369
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + VR C AL F+ V +N +I AL G +A
Sbjct: 319 IRVGTALATMFVR-----CGDVAGAKQALEAFAD---RDVVVYNALIAALAQHGHYEEAF 370
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y M +G ++ T+ V+ AC S A+ G+ +H + G S D+ + ++L+ +Y
Sbjct: 371 EQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMY 430
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CGD+ R++F+ M R ++SW +I+G A D A
Sbjct: 431 ARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEA 470
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 71 ICNGFRP-----DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ N ++P ++ + +++ C ++ + K +H V+AG D+F+ + L+++Y+
Sbjct: 69 LSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYV 128
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC V ++F KM R V+SW ++IS A G
Sbjct: 129 KCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQG 162
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 2/161 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ + D + L+ + + G + A VF +V TWN MI A G + +
Sbjct: 814 EIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASK 873
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL +N M G +PD TF ++ AC S L +E + L + G S + L+
Sbjct: 874 ALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLV 933
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
L + G + ++M W T++ G++
Sbjct: 934 GLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNV 974
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLDL + +G + L VF ++ V W+ MI S +A+ L+ M P+
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FTF V+++C + ++ GK+VH +K G ++FV + LMD+Y KCG +D K+F
Sbjct: 243 QFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFM 302
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ R+ V+W TMI G SGD D A
Sbjct: 303 ELPNRNEVTWNTMIVGYVQSGDGDKA 328
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 87/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + + L+D+ + G+ D+++ +F ++ + TWN MI G +A
Sbjct: 269 VLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKA 328
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M+ + + T+ V++AC + A+E G ++H L++K + +D+ V + L+D+
Sbjct: 329 LSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDM 388
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R +FD + R +SW MISG + G
Sbjct: 389 YAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHG 424
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G ++ + L+D + G + A F I C + +W M+ + +
Sbjct: 67 IYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDS 126
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M GF P+ FTF V+KACI A GK VHG +K + D++V L+DL
Sbjct: 127 LQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDL 186
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K GD + ++F++M V+ W+ MIS A S
Sbjct: 187 YTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSN 222
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G + F F ++K ++ E +H K G + FV + L+D Y CG V+
Sbjct: 35 EGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNS 94
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAAS 158
R+ FD + + +VSWT M++ A +
Sbjct: 95 ARQAFDAIACKDMVSWTGMVACYAEN 120
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ + G +A LVF + +WN MI ++ G +AL + +M
Sbjct: 378 DVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQ 437
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDV 130
P+K TF ++ AC + ++ G+ V+ G M + ++ L + G +
Sbjct: 438 ETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHL 497
Query: 131 DGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
D K+ +++ + V W ++ D+D
Sbjct: 498 DKAVKLIEEIPLEPNVKVWRALLGACVIHNDVD 530
>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 559
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L KL+ + +G A VF + V +W M+ +G +AL L+ LM
Sbjct: 46 DLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMR 105
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G RP++FT+ AC + G++VH A K F+ DMFVQS LMD++L+CG V+
Sbjct: 106 ASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVE 165
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
R++F +M + VVSW +I G G D DA
Sbjct: 166 DARQLFAEMGKKDVVSWNALIRGFVERGHDGDA 198
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G +P + +++ CI+S A +GK VHG +A + D+ + + L+ Y + GDV
Sbjct: 6 GAKPTAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAA 65
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
RK+FD M RSVVSWT M+SG A +G
Sbjct: 66 ARKVFDGMPHRSVVSWTAMVSGYARNG 92
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ D + L+D+ G + A +F+++ V +WN +IR G AL L++
Sbjct: 144 FAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFS 203
Query: 69 LMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ PD +T +KAC I +A+ + +H +K G+ + V +L++ Y KC
Sbjct: 204 SMLKEAMIPDHYTLGSALKACGIVGVAVNV-ELIHSCIIKLGYWDEKVVIGSLINSYAKC 262
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ R ++D + +VS T +ISG
Sbjct: 263 RSMSSARVIYDSISEPDLVSSTALISG 289
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQ 62
II+ G ++++++ L++ + A +++ I P + + +I T+D + S
Sbjct: 240 IIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSED 299
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ + G D V+ C + + G ++H K D+ + + L+D
Sbjct: 300 AMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVD 359
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G+ ++ FD+M R+V+SWT++I+ +G + A
Sbjct: 360 MYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDA 401
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G+ A F ++ +V +W +I A +GS A+ L+N M+
Sbjct: 350 DIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMV 409
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+G RP+ TF ++ AC KG E + + G S+ +DL + G +
Sbjct: 410 EDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQL 469
Query: 131 DGGRKMFDKMRVR 143
+ K+ K ++
Sbjct: 470 EDAWKLVQKTNLK 482
>gi|302776854|ref|XP_002971568.1| hypothetical protein SELMODRAFT_96189 [Selaginella moellendorffii]
gi|300160700|gb|EFJ27317.1| hypothetical protein SELMODRAFT_96189 [Selaginella moellendorffii]
Length = 542
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+I+ GL D+L+ L+ + C G + A +F ++ H W ++ A +G
Sbjct: 96 RILHLGLEADKLVANFLILMYGKCKSNGFLEEAEAIFRKLPRRHFVAWTALVTAYAQNGQ 155
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ +A + LM +G +PD F V+ AC A++ G+ VH AG S D V +
Sbjct: 156 ATKAFRTFQLMDLDGSQPDSIAFISVLDACATVFALDAGRLVHRTVADAGVSLDARVVNM 215
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ LY +CG + R +FDK+ R+VVSWTTM++ A +G D A
Sbjct: 216 LIHLYGRCGALREARSLFDKLDERNVVSWTTMVAAYAQNGYPDEA 260
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A +F ++ ++ +WN M+ A +G +AL ++ LM G + D FT+ +
Sbjct: 255 GYPDEARAIFDEMPRRNLVSWNAMVTAYAENGRGKKALDIFRLMDLEGTQADGFTYLGSL 314
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC + G+ +H ++ S D V + L++LY KCG + +F M ++ +
Sbjct: 315 DACSTIPDLAYGRLIHAEIRESRSSSDPKVGNALLNLYAKCGHLRDAVALFATMPMKILA 374
Query: 147 SWTTMISGLAASG 159
+W TMI A +G
Sbjct: 375 AWNTMIGAFAQTG 387
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 23/150 (15%)
Query: 33 LLVFSQIRCPH-----------------VFTWNL-MIRALTIDGSSLQALLLYNL--MIC 72
LL F+++RC H V W TID ++ + + +
Sbjct: 5 LLAFTRVRCFHRHHRRSYSSLSRRGLVKVEPWRKGKTNKFTIDEEQCRSRIRQAVEELCT 64
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC---GD 129
+G R D T+ +++ C + A+ +GK VH + G D V + L+ +Y KC G
Sbjct: 65 DGCRADINTYASLLQQCGNAGALAEGKRVHARILHLGLEADKLVANFLILMYGKCKSNGF 124
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ +F K+ R V+WT +++ A +G
Sbjct: 125 LEEAEAIFRKLPRRHFVAWTALVTAYAQNG 154
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S+D + LL+L + G A+ +F+ + + WN MI A G +A+ ++
Sbjct: 339 SSDPKVGNALLNLYAKCGHLRDAVALFATMPMKILAAWNTMIGAFAQTGHGKEAIEVFEH 398
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSR--DMFVQSTLMDLYLK 126
+ G PD+ +F V+ C + + G + + G +R D FV + +++ +
Sbjct: 399 LAMEGLLPDEISFISVLSGCAYAGIFKDGLRIFVSITSDYGVTRVYDHFVCA--VNILCQ 456
Query: 127 CGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
G ++ ++ D M V + W T+++ D+ A
Sbjct: 457 AGMLEEAEELADTMPFVTDAIPWMTLLAAAKVQNDMPRA 495
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 11/144 (7%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRA-----------LTIDGSSLQALLLYNLMICNGF 75
G+TD A+ F ++ + TWN MI L QAL ++ + +
Sbjct: 330 GETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAM 389
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF ++ C + +A+E+G+++H +K GF D+ V S L+++Y KCG ++ K
Sbjct: 390 KPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATK 449
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
F +M +R++V+WT+MISG + G
Sbjct: 450 AFVEMSIRTLVTWTSMISGYSQHG 473
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-ALLLYNLMICNGFRP 77
LC Y K+ + A+ F + +V TW MI A D + + L L+ M+ +G P
Sbjct: 220 LCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLP 279
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++FT V+ C L + GK+V K G ++ V+++ M LYL+ G+ D + F
Sbjct: 280 NEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFF 339
Query: 138 DKMRVRSVVSWTTMISGLA 156
++M S+++W MISG A
Sbjct: 340 EEMDDVSIITWNAMISGYA 358
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G S D + L++ G + A +F Q+ +V TW +I T++ L+A
Sbjct: 104 MVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEA 163
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M+ G P +T ++ AC AS + G +VHG +K + ++L +
Sbjct: 164 LEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRM 223
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y K G ++ + F + ++V++WTTMIS A
Sbjct: 224 YAKSGSLESAMRAFRMVPDKNVITWTTMISACA 256
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ C+ + ++ + +HG VK G S DMFV ++L++ Y++CG R +FD+M ++
Sbjct: 84 LLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKN 143
Query: 145 VVSWTTMISGLAASGDL 161
VV+WT +I+G + L
Sbjct: 144 VVTWTALITGYTVNSQL 160
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G +D ++ L+++ + G + A F ++ + TW MI + G +
Sbjct: 418 QTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQE 477
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
A+ L+ M G RP++ TF V+ AC + EK + + +K + + V +
Sbjct: 478 AIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDM-MKEEYKIEPIVDHYGCM 536
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+D++++ G +D + + W+++++G + G+++ A
Sbjct: 537 VDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELA 581
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I +++ L + KLL L S +G +A +F + P+ F W +I T + A
Sbjct: 27 LISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENA 86
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M P FT V+KA I+ G V+GLAV+ G+ D+ V++ +++L
Sbjct: 87 FAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIEL 146
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++CG++ R+MFD+M R VSW +MI+G +G +D A
Sbjct: 147 FMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIA 187
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
A ++F ++ + +W +M+ A G+ + A L+ LM + D T+ +I C
Sbjct: 217 EARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIH----DVGTWNLMISGCC 272
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ ++ KE + R++ ++D Y+K GDVD R +FD+M +++V+W+T
Sbjct: 273 KAGEMDAAKEFFDRMQE----RNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWST 328
Query: 151 MISGLAASG 159
MI G A +G
Sbjct: 329 MIGGYAKTG 337
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF-V 85
G D A VF Q+ ++ W+ MI G +L LY G +PD+ TF +
Sbjct: 306 GDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDE-TFALGI 364
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
I AC + + V V ++ V ++L+D+Y KCG+++ ++F+ + + +
Sbjct: 365 ISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDL 424
Query: 146 VSWTTMISGLAASG 159
++T+I+ A G
Sbjct: 425 HCYSTVITAFANHG 438
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK--FTFPF 84
G+ D A +F ++ +V +W MI+ G L+A +L+ M P+K ++
Sbjct: 182 GRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERM------PEKDLASWKV 235
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ A ++ + + + L D+ + ++ K G++D ++ FD+M+ R+
Sbjct: 236 MVSAYMSVGNLVAARNLFELMP----IHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERN 291
Query: 145 VVSWTTMISGLAASGDLDAA 164
V SW +I G GD+DAA
Sbjct: 292 VASWVMIIDGYIKVGDVDAA 311
>gi|302800080|ref|XP_002981798.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
gi|300150630|gb|EFJ17280.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
Length = 483
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I G D +L L+++ S D A+ VF + V W MI A + G L+
Sbjct: 35 RMITLGCELDTVLGTNLINMYSRCDVPDKAIEVFDAMHNKSVVVWTAMIAAHSQQGQGLE 94
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M G R DK F V+ C A+ + + +H +DM V++TL++
Sbjct: 95 ALELFKRMDIEGVRADKVAFSLVLDVCANLAALAQARILHATVAGTELEQDMVVKNTLVN 154
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG ++ R++F+KM + +VSWT++I+ A G AA
Sbjct: 155 MYGKCGKLNEARQVFEKMASKDMVSWTSIIAAYAQQGSASAA 196
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M G R D+ TF VI+AC + G+ +H + G D + + L+++Y +C
Sbjct: 1 MELEGLRGDRSTFTSVIEACACLPDLTLGQLLHYRMITLGCELDTVLGTNLINMYSRCDV 60
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D ++FD M +SVV WT MI+ + G
Sbjct: 61 PDKAIEVFDAMHNKSVVVWTAMIAAHSQQG 90
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G+ D + +FS++ TWN MI + +G +AL L+ MI G + +
Sbjct: 491 LMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYN 550
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T ++ AC AI GKE+HG+ +K D+F +S L+D+Y KCG+++ ++F+
Sbjct: 551 NVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFE 610
Query: 139 KMRVRSVVSWTTMISGLAASG 159
M ++ VSW ++IS A G
Sbjct: 611 HMPEKNEVSWNSIISAYGAHG 631
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 45 FTWNLMIRALTIDGSSLQALLLYNLMICN--GFRPDKFTFPFVIKACIASLAIEKGKEVH 102
WN +IR T+ G A+L Y M + RPD T P+V+K+C A A+ G+ VH
Sbjct: 111 LPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVH 170
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
G RDM+V S L+ +Y G +DG R++FD M R V W M+ G +GD+
Sbjct: 171 RTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVA 230
Query: 163 AA 164
+A
Sbjct: 231 SA 232
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R D LV L+D+ A VF + V + MI ++ S A
Sbjct: 375 IVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAA 434
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ ++ G +P+ + AC + A+ G+E+HG +K + +V+S LMD+
Sbjct: 435 VKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDM 494
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +D MF KM + V+W +MIS A +G+ + A
Sbjct: 495 YSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEA 535
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++YGL + + L+ + + + A +F + + TWN MI +G AL
Sbjct: 275 VKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDAL 334
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M +G +PD T ++ A ++GKE+HG V+ D+F+ S L+D+Y
Sbjct: 335 RLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIY 394
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
KC DV + +FD + VV +TMISG
Sbjct: 395 FKCRDVRMAQNVFDATKSIDVVIGSTMISG 424
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+ + + G D A VF + WN+M+ G A+ L+
Sbjct: 177 GLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLF 236
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+M +G P+ T + C A + G ++H LAVK G ++ V +TL+ +Y KC
Sbjct: 237 RVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKC 296
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ ++F M +V+W MISG +G +D A
Sbjct: 297 QCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDA 333
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ + D L+D+ G + AL VF + + +WN +I A G ++
Sbjct: 577 IIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKES 636
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ L M GF+ D TF +I AC + +++G + + + + S ++D
Sbjct: 637 VDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVD 696
Query: 123 LYLKCGDVDGGRKMFDKM 140
LY + G +D + M
Sbjct: 697 LYSRAGKLDKAMQFIADM 714
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YG+ D A +F ++ V TW+ +I + + G S ALLLY+ M+ G +P+
Sbjct: 461 LISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPN 520
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T VI +C A+E G+ +H G D+ + + L+D+Y+KCG + RKMFD
Sbjct: 521 SATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFD 580
Query: 139 KMRVRSVVSWTTMISGLAASGD 160
M R VV+W MISG G+
Sbjct: 581 SMLERDVVTWNVMISGYGMHGE 602
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
CP F WN ++R+ L + M +G RP +FT P V A A+ G
Sbjct: 69 CPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128
Query: 101 VHGLAVKAGF---SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
VH +V+ G + V S+L+ +Y +CG V ++FD+M R VV+WT +ISG
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188
Query: 158 SG 159
+G
Sbjct: 189 NG 190
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+R+GL V L Y G A+ +F ++ V W +I +G
Sbjct: 134 VRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCG 193
Query: 62 QALLLYNLMICN----GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ L M+ + G RP+ T ++AC + G +HG VKAG V
Sbjct: 194 EGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVV 253
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+L +Y KC + R +F ++ + +VSWT++I +G + A
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKA 300
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ + +V L + + T+ A ++F ++ + +W +I A G + +A+
Sbjct: 242 VKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAV 301
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M +G +PD+ ++ + GK H V+ F + + + L+ +Y
Sbjct: 302 ELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMY 361
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC VD +F + R SW++M+ +G
Sbjct: 362 AKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAG 396
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+D+ G+ A +F + V TWN+MI + G ++QAL L+
Sbjct: 551 GLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLF 610
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
++M +P+ TF ++ AC + ++KG+E+ + ++ + ++DL K
Sbjct: 611 SMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKS 670
Query: 128 GDVDGGRKMFDKMRVR 143
G + + M +
Sbjct: 671 GHLQEAEDVVSAMPIE 686
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R + L+ L+ + + + D A VF + +W+ M+ A G L+
Sbjct: 342 IVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKC 401
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLA-------IEKGKEVHGLAVKAGFSRDMFV 116
L LY M FR DK F + + I+ ++ + G+ H ++K + V
Sbjct: 402 LELYREM---QFR-DKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSV 457
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ L+ +Y +CG+ D RK+F ++ + VV+W+ +IS
Sbjct: 458 ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALIS 494
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 81/151 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D + L+D + G D A L+F ++ TW +I G S +
Sbjct: 180 VVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVS 239
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N M PD++ V+ AC +E GK++HG ++ GF D+ V + ++D
Sbjct: 240 LKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDF 299
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
YLKC V GRK+F+++ + VVSWTTMI+G
Sbjct: 300 YLKCHKVKTGRKLFNRLVDKDVVSWTTMIAG 330
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II++G+S D L+D+ S A LVF +I + WN M + + ++
Sbjct: 483 IIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEES 542
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY + + +P++FTF VI A ++ G++ H +K G D FV ++L+D+
Sbjct: 543 LKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDM 602
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ K F R + W +MIS A GD A
Sbjct: 603 YAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKA 643
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NL 69
+D LV LL S A +F + ++ TW+ M+ T G S++ALLL+
Sbjct: 85 HDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRF 144
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M +P+++ V++AC + + ++HG VK GF +D++V ++L+D Y K G
Sbjct: 145 MRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGY 204
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VD R +FD ++V++ V+WT +I+G A G
Sbjct: 205 VDEARLIFDGLKVKTTVTWTAIIAGYAKLG 234
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D +V ++D K +F+++ V +W MI + A
Sbjct: 281 VLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDA 340
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G++PD F V+ +C + A++KG++VH A+K D FV++ L+D+
Sbjct: 341 MDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDM 400
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC + RK+FD + +VVS+ MI G + L A
Sbjct: 401 YAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEA 441
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ + ND + L+D+ Y K D +A VF + +V ++N MI + +
Sbjct: 383 IKVNIDNDDFVKNGLIDM---YAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLV 439
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L+ M + P TF ++ + +E ++H L +K G S D F S L+
Sbjct: 440 EALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALI 499
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D+Y KC V R +F+++ R +V W M SG +
Sbjct: 500 DVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYS 534
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ GL +D + L+D+ + G + + FS + WN MI G +
Sbjct: 582 NQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAA 641
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL ++ MI G +P+ TF ++ AC + ++ G K G + + ++
Sbjct: 642 KALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGIDHYACMV 701
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
L + G + ++ KM ++ + V W +++S SG ++
Sbjct: 702 SLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVE 743
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQ-LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+IIR GL DQ L+ + S ++ VF ++ P + WN +I+ +
Sbjct: 32 RIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFF 91
Query: 62 QALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ + + M+ G RPD++TFP V+K C + + G VHGL ++ GF +D+ V ++
Sbjct: 92 ETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSF 151
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D Y KC D+ RK+F +M R+ VSWT ++ SG+L+ A
Sbjct: 152 VDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEA 195
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F + R V W+ +I +G +A +++ M +PD+F ++ AC
Sbjct: 260 LFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGC 319
Query: 95 IEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
E ++V L + +V L+D+ KCG +D K+F++M R +VS+ +M+
Sbjct: 320 FELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMME 379
Query: 154 GLAASG 159
G+A G
Sbjct: 380 GMAIHG 385
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+ +V L+D+ + G D A +F ++ + ++ M+ + I G +A+ L+ M
Sbjct: 338 SSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKM 397
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG---FSRDMFVQSTLMDLYLKC 127
+ G PD+ F ++K C S +E+G L K S D + S +++L +
Sbjct: 398 VDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHY--SCIVNLLSRT 455
Query: 128 GDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
G + ++ M + S W +++ G + G+ + A
Sbjct: 456 GKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIA 493
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G D ++ +D FYGK A VF ++ + +W ++ A G
Sbjct: 136 VLRIGFDKDVVVGTSFVD---FYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGEL 192
Query: 61 LQALLLYNLMICNGFRPDKF--TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+A +++LM P++ ++ ++ + S + K++ K RD+ +
Sbjct: 193 EEAKSMFDLM------PERNLGSWNALVDGLVKSGDLVNAKKLFDEMPK----RDIISYT 242
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++D Y K GD+ R +F++ R V +W+ +I G A +G + A
Sbjct: 243 SMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEA 288
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 70/111 (63%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V++WN +I G SLQAL ++ M P++ TFP IK+C + + GK++H
Sbjct: 51 VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQ 110
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
A G+ D+FV S L+D+Y KCG ++ RK+FD++ R+VVSWT+MISG
Sbjct: 111 QAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISG 161
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
L+D + G+ + VF + V +WN +I +G S++A L++ M+ G R
Sbjct: 239 LMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRY 298
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ T V+ AC S A++ GK +H VK ++ V ++++D+Y KCG V+ RK F
Sbjct: 299 NAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAF 358
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D+++ ++V SWT M++G G
Sbjct: 359 DRLKRKNVKSWTVMVAGYGMHG 380
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 13/170 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+ +G +D + L+D+ S G + A +F +I +V +W MI + +
Sbjct: 110 QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAR 169
Query: 62 QALLL-----------YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAG 109
+A+ L Y+ ++ G D VI AC A + ++ E VHGLAVK G
Sbjct: 170 EAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISAC-ARVCVKSVTECVHGLAVKKG 228
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
F + V +TLMD Y KCG++ RK+FD M V SW ++I+ A +G
Sbjct: 229 FEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ L ++ ++ ++D+ G+ + A F +++ +V +W +M+ + G +
Sbjct: 325 QVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKE 384
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
A+ ++ MI G +P+ TF V+ AC + +++G +K F + ++ S +
Sbjct: 385 AMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFN-KMKCEFDVEPGIEHYSCM 443
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMI 152
+DL + G + + +M+V+ + W +++
Sbjct: 444 VDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLL 476
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L DQ+ +L G D A VF +IR W +MI +G ALLL+
Sbjct: 251 NLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLF 310
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M+ RPD +T V+ +C ++ G+ VHG A G + D+ V S L+D+Y KC
Sbjct: 311 SEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKC 370
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
G +F M+ R+VVSW +MI G A +G DL+A
Sbjct: 371 GVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEA 407
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 31/175 (17%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM-------------------- 50
ND + +LL+L + G+ HA +F ++ F+WN M
Sbjct: 56 NDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNM 115
Query: 51 -----------IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
I +G AL ++ M G +P ++T V+ AC L + +GK
Sbjct: 116 PSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGK 175
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++HG + ++FV + L DLY +CG++D R++FD+M +R+VV+W MISG
Sbjct: 176 QIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+++D L+ L+D+ G T A +FS ++ +V +WN MI ++G L+AL LY
Sbjct: 352 GVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLY 411
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMDLYLK 126
M+ +PD TF V+ AC+ + +E+GKE ++ + G + +++L+ +
Sbjct: 412 ENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGR 471
Query: 127 CGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDL 161
G +D + M + + + WTT++S GD+
Sbjct: 472 SGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDI 507
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 35/162 (21%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II L + + L DL + G+ D A +F ++ +V TWNLMI + +
Sbjct: 180 RIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEK 239
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L++ M + +PD+ T S+++
Sbjct: 240 CIDLFHEMQVSNLKPDQVT-----------------------------------ASSVLG 264
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y++ G +D RK+F ++R + V WT MI G A +G + A
Sbjct: 265 AYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDA 306
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D F+ + L++LY K G++ RK+FD+M R SW M+S A SG
Sbjct: 57 DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSG 103
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
N +L +R+ +D G H + C RA +D QA L + M
Sbjct: 2 NSKLKLRQAIDTLYTNGPASHECYTRLALEC---------FRASDVD----QAKRLKSHM 48
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGD 129
+ F+P+ TF I + +L + G+ H + + RD F + ++ LY K G
Sbjct: 49 HLHLFKPND-TF---IHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGL 104
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V+ R +FD M R VS+ T+ISG A +G
Sbjct: 105 VEDLRVIFDNMPSRDSVSYNTVISGFAGNG 134
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 9/161 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQI--RCPHVFTWNLMIRALTIDG 58
I+++ +++D + LL +FYGK + ++FS++ R V +WN MI +G
Sbjct: 584 ILKHSVADDNAIENTLL---AFYGKCEQMEDCEIIFSRMSERRDEV-SWNAMISGYIHNG 639
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+A+ L LM+ G R D FT V+ AC + +E+G EVH A++A ++ V S
Sbjct: 640 ILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGS 699
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG +D + F+ M VR++ SW +MISG A G
Sbjct: 700 ALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHG 740
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + GL++D L+++ G A +F ++ ++ +W+ ++ +G +
Sbjct: 64 QIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDE 123
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A +L+ +I G P+ + ++AC + ++ G E+HGL K+ ++ DM + + L
Sbjct: 124 ACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVL 183
Query: 121 MDLYLKC-GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
M +Y C +D R++F+++++++ SW ++IS GD +A
Sbjct: 184 MSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISA 228
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 46 TWNLMIRAL-TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
+WN I AL T + S LQA+ + M+ G++P++ TF ++ A + +E G+++H L
Sbjct: 524 SWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHAL 583
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDLDA 163
+K + D +++TL+ Y KC ++ +F +M R VSW MISG +G L
Sbjct: 584 ILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHK 643
Query: 164 A 164
A
Sbjct: 644 A 644
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLV-RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IR L + +L+ L++L + D+A +F + +WN +I L + +
Sbjct: 380 LIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEE 439
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ ++ M NG P KF+ + +C + I G+++HG +K G D+ V + L+
Sbjct: 440 AVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLT 499
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
LY + ++ +K+F M VSW + I LA S
Sbjct: 500 LYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATS 535
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 47/73 (64%)
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
S +E ++H K G + D+F +TL++++++ G++ +K+FD+M +++VSW+ +
Sbjct: 52 SCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCL 111
Query: 152 ISGLAASGDLDAA 164
+SG A +G D A
Sbjct: 112 VSGYAQNGMPDEA 124
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR L + ++ L+D+ + GK D+A F + ++++WN MI G +AL
Sbjct: 687 IRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKAL 746
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQ 117
L+ M +G PD TF V+ AC +++G EV+ LA + + F
Sbjct: 747 KLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRI----EHF-- 800
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMI 152
S ++DL + GDV + M + + + W T++
Sbjct: 801 SCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTIL 836
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YG+ D A +F ++ V TW+ +I + + G S ALLLY+ M+ G +P+
Sbjct: 461 LISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPN 520
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T VI +C A+E G+ +H G D+ + + L+D+Y+KCG + RKMFD
Sbjct: 521 SATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFD 580
Query: 139 KMRVRSVVSWTTMISGLAASGD 160
M R VV+W MISG G+
Sbjct: 581 SMLERDVVTWNVMISGYGMHGE 602
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
CP F WN ++R+ L + M +G RP +FT P V A A+ G
Sbjct: 69 CPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128
Query: 101 VHGLAVKAGF---SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
VH +V+ G + V S+L+ +Y +CG V ++FD+M R VV+WT +ISG
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188
Query: 158 SG 159
+G
Sbjct: 189 NG 190
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+R+GL V L Y G A+ +F ++ V W +I +G
Sbjct: 134 VRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCG 193
Query: 62 QALLLYNLMICN----GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ L M+ + G RP+ T ++AC + G +HG VKAG V
Sbjct: 194 EGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVV 253
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S+L +Y KC + R +F ++ + +VSWT++I +G + A
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKA 300
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ + +V L + + T+ A ++F ++ + +W +I A G + +A+
Sbjct: 242 VKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAV 301
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M +G +PD+ ++ + GK H V+ F + + + L+ +Y
Sbjct: 302 ELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMY 361
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC VD +F + R SW++M+ +G
Sbjct: 362 AKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAG 396
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + L+D+ G+ A +F + V TWN+MI + G ++QAL L+
Sbjct: 551 GLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLF 610
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
++M +P+ TF ++ AC + ++KG+E+ + ++ + ++DL K
Sbjct: 611 SMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKS 670
Query: 128 GDVDGGRKMFDKMRVR 143
G + + M +
Sbjct: 671 GHLQEAEDVVSAMPIE 686
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R + L+ L+ + + + D A VF + +W+ M+ A G L+
Sbjct: 342 IVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKC 401
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLA-------IEKGKEVHGLAVKAGFSRDMFV 116
L LY M FR DK F + + I+ ++ + G+ H ++K + V
Sbjct: 402 LELYREM---QFR-DKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSV 457
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ L+ +Y +CG+ D RK+F ++ + VV+W+ +IS + G
Sbjct: 458 ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLG 500
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 74/133 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A LVF ++ + +WN MI L +G +A + M GF PD T ++
Sbjct: 459 GSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSIL 518
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC ++ A+++ KEVH A++AG D+ V S L+ Y KCG +D R +F+ M R ++
Sbjct: 519 NACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMASRDII 578
Query: 147 SWTTMISGLAASG 159
+W MI GLA G
Sbjct: 579 TWNVMIGGLAQHG 591
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL +D + L+ + + G A LVF ++ ++ TWN MI L G L+A
Sbjct: 234 LRAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEAF 293
Query: 65 LLYNLMICNGFRPDKFTFPFVIK-ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G PD T+ ++ AC ++ A++ ++VH A K G D+ V + L+ +
Sbjct: 294 SLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVRVGNALVHM 353
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D R++F M R VVSWT MI GLA G
Sbjct: 354 YAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHG 389
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 5 IRY-GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IR+ G +D L L+ + + G D A LVF+ + + TWN+MI L G +A
Sbjct: 132 IRHAGFQSDLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M GF PD T+ ++ A + A+ KEVH A++AG D+ V + L+ +
Sbjct: 192 FSLFLQMQREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVRVGTALVHM 251
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y + G + R +FDKM R++++W +MI GLA G
Sbjct: 252 YARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHG 287
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ + + KL+ + G+ + VF + +VF W +MI + A
Sbjct: 31 IIKSEMEQHPYVANKLMSIYIRCGRLQNTREVFDTLVEKNVFNWTIMIGGYAENNHFEDA 90
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +YN M NG +P++ TF ++KAC + +A++ G+++H AGF D+ + + L+ +
Sbjct: 91 IEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLRLGNALIHM 150
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG +D R +F+ M R +++W MI L G
Sbjct: 151 YARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHG 186
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL D + L+ + + G D A VF + V +W +MI L G +A
Sbjct: 337 KVGLDFDVRVGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFS 396
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M GF P+ T+ ++ ++ A+E KEVH AV A + V + L+ +Y
Sbjct: 397 LFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYA 456
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ R +FD+M R ++SW MI GLA +G
Sbjct: 457 KCGSIENARLVFDRMEDRDIISWNAMIGGLAQNG 490
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL +D + L+ + G+ D A LVF + + TWN+MI L G +A L+
Sbjct: 541 GLESDLRVGSALVHTYAKCGRIDDARLVFEGMASRDIITWNVMIGGLAQHGREHEAFSLF 600
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M GF PD T+ ++ ++ A+E KEVH AV+AGF D V S L+ +Y KC
Sbjct: 601 LQMQDVGFVPDAITYLSILGGNVSIEALEWVKEVHRHAVRAGFDTDPRVSSALVHMYTKC 660
Query: 128 GDVDGGRKMFDKMRVRSV--VSWTTMISGLAASGDLDAA 164
GD+D + F + + +W ++ GD++ A
Sbjct: 661 GDIDNAKLHFTPNMLPDLDGTAWGDLLDACRNHGDVEMA 699
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D +T+ +++ + K+VH +K+ + +V + LM +Y++CG + R++F
Sbjct: 4 DSYTYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVF 63
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D + ++V +WT MI G A + + A
Sbjct: 64 DTLVEKNVFNWTIMIGGYAENNHFEDA 90
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D L+ L+ + G+ + A VF I V WN MI +G S +A+ L+
Sbjct: 216 GMEVDSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALF 275
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M G RPDK T V+ +C A A+E G E+ G A+ G +++V + L+D+Y KC
Sbjct: 276 HSMREAGLRPDKITLVGVLSSCAAVGALELGVELDGYALHRGLYSNVYVGTALVDMYAKC 335
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
GD++ +F KM ++ SW +I GLA +G
Sbjct: 336 GDLEKATYVFGKMPFKNEASWNALICGLAFNG 367
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+ LL+ S P F++N+ +R +L L+ M+ RPD +T PF++ A
Sbjct: 67 DYVLLLLSSHPAPTAFSYNVALRFFASSRPD-TSLRLFLSMLRAELRPDAYTLPFLLLAA 125
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+ + H K G +L+ +Y GD R++FD + R VVSW
Sbjct: 126 ARCPSPAVARSAHAFLEKLGLRDHDHTVHSLITMYSCLGDHLTARRVFDGIPHRDVVSWN 185
Query: 150 TMISGLAASGDLDA 163
+++ + DA
Sbjct: 186 SIMKAYERAACRDA 199
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 30/154 (19%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL + V L+ + S G A VF I V +WN +++A
Sbjct: 143 KLGLRDHDHTVHSLITMYSCLGDHLTARRVFDGIPHRDVVSWNSIMKA------------ 190
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ AC + + GK V AG D + S L+ +Y
Sbjct: 191 ------------------YERAACRDAGNLVLGKWVEEWVRSAGMEVDSLIGSALVGMYE 232
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG+++ R++FD + + VV+W MI+G A +G
Sbjct: 233 KCGEMEEARRVFDGISNKDVVAWNAMITGYAQNG 266
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL ++ + L+D+ + G + A VF ++ + +WN +I L +G A+ +
Sbjct: 317 GLYSNVYVGTALVDMYAKCGDLEKATYVFGKMPFKNEASWNALICGLAFNGRGYDAIQQF 376
Query: 68 NLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYL 125
LM G +PD TF V+ AC+ + +E G+ + L + S ++DL
Sbjct: 377 ELMRNEKGLQPDDITFIGVLSACVHAGLLEYGRRLFSSLTPVFKIIPKIEHYSCIVDLLA 436
Query: 126 KCGDVDGGRKMFDKM 140
+ G ++ +KM
Sbjct: 437 RAGHLEAAWDFIEKM 451
>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1198
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 69/126 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G HA +FS F WN+MIR A+LLY M+ +P FT FV
Sbjct: 519 GFISHAYSLFSTSNPTDAFLWNVMIRGFVDHAQYYDAILLYRQMVQLSIKPTNFTLTFVF 578
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC IE GK+VH AVK G+ D+FV ++L+ +Y +CG + R++FDKM R+ +
Sbjct: 579 KACGCLRDIEFGKQVHDDAVKDGYKLDLFVLNSLITMYARCGSYELSRQVFDKMSDRNGI 638
Query: 147 SWTTMI 152
W +MI
Sbjct: 639 CWNSMI 644
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + DQ + + + + G+ D A +F I + TW MI A T LQ+L+L+
Sbjct: 699 GFNLDQYVQNAAIGMYAKCGRLDLARSIFDGILNKDIVTWANMIEAYTQVDLPLQSLVLF 758
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQSTLMDLYL 125
M+ PD T V++AC +++ VHG+ + G F+ ++ V++ + DLY
Sbjct: 759 KQMMLQNACPDSVTLLSVVRACTILASLQHAHAVHGIVIVTGGFFNSELAVETAVTDLYA 818
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG + RK+FD+M+ R+++SW+ +ISG G
Sbjct: 819 KCGSLTYARKVFDRMQNRNIISWSAIISGYGMHG 852
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D ++ L+ + + G + + VF ++ + WN MI A I + +
Sbjct: 598 VKDGYKLDLFVLNSLITMYARCGSYELSRQVFDKMSDRNGICWNSMIGACLITERYDEGV 657
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G R D+ V++ C+ + G V +A AGF+ D +VQ+ + +Y
Sbjct: 658 KLFWQMSGEGIRLDRAALLNVMR-CVRTE--NDGNGVSRVARDAGFNLDQYVQNAAIGMY 714
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
KCG +D R +FD + + +V+W MI
Sbjct: 715 AKCGRLDLARSIFDGILNKDIVTWANMIEA 744
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 8 GLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL + + KL+ C S G +A L+FSQI+ P++F +N +IRA + + AL
Sbjct: 31 GLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLIRAYSRSSTPQLALH 90
Query: 66 LYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMDL 123
+ LM+ + PD+ TFPF+I AC SL + GK++H +K G S D VQ+ L+
Sbjct: 91 YFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRF 150
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +C + RK+FD++ VV W +++G G
Sbjct: 151 YAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRG 186
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +F +I V WN+++ G + +AL + M+ +G PD+F +K C
Sbjct: 160 ARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQ 219
Query: 92 SLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
A+++GK +H K + D+F+ + L+D+Y KCG +D ++F+ M R+V SW+
Sbjct: 220 LGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSA 279
Query: 151 MISGLAASGDLDAA 164
MI G A G + A
Sbjct: 280 MIGGFALHGHVRKA 293
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL- 64
R L D + L+D+ + G D ++ VF + +VF+W+ MI + G +A+
Sbjct: 236 RKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQ 295
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDL 123
L + + +G RPD VI AC + E+G+ + + + G S ++DL
Sbjct: 296 CLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDL 355
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G +D K+ +M ++ + W ++SG ++D A
Sbjct: 356 LCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLA 397
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + YG+ ++ A VF ++ + WN MI A + + L LY MI G +PD
Sbjct: 24 LIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPD 83
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF +KAC + + ++ G+ + AV G+ D+FV S++++LY K G +D + +FD
Sbjct: 84 SSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFD 143
Query: 139 KMRVRSVVSWTTMISGLAASG-DLDA 163
KM R VVSWTTMI+G A SG LDA
Sbjct: 144 KMVKRDVVSWTTMITGFAQSGRPLDA 169
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + +G D +V +L+L + GK D A +VF ++ V +W MI G L
Sbjct: 108 NQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPL 167
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ +Y M D +I+AC + + G VHG V+ + D +Q++L+
Sbjct: 168 DAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLI 227
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K G ++ ++F+ + +SV+SW +ISG A +G
Sbjct: 228 DMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNG 265
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R ++ D +L L+D+ + GK + A VF I V +W +I +G + +
Sbjct: 211 MVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKT 270
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L M +GF+PD + + AC ++ GK +HG VK + D + L+D+
Sbjct: 271 LASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLY-LDKVSGTALIDM 329
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG + R +FD++ R ++ W MIS GD
Sbjct: 330 YAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGD 366
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D++ L+D+ + G A +F QI + WN MI + I G ++AL L+ M
Sbjct: 319 DKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMK 378
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
PD TF ++ AC S +E+G+ H L K+ + ++DL + G V
Sbjct: 379 ETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQV 438
Query: 131 DGGRKMFDKMRVRSVVS-WTTMISG 154
+ ++ + M ++ ++ W ++SG
Sbjct: 439 EEAYQLIESMHIKPGLAIWVALLSG 463
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL + +G A VF ++ +F+WN+++ G +AL LY+ M+ G RPD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+TFP V++ C + +G+EVH ++ GF D+ V + L+ +Y+KCGD+ R +FD
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254
Query: 139 KMRVRSVVSWTTMISG 154
+M R +SW MISG
Sbjct: 255 RMPRRDRISWNAMISG 270
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL++ ++ L+D+ S D AL VF +I +V +W +I L ++ S +AL
Sbjct: 425 RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALF 484
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ MI + +P+ T V+ AC A+ GKE+H A++ G D F+ + L+D+Y+
Sbjct: 485 FFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYV 543
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CG ++ F+ + V SW +++G A G
Sbjct: 544 RCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQG 576
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IRYG +D +V L+ + G A LVF ++ +WN MI + L+
Sbjct: 221 VIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEG 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ +M PD T VI AC A G+EVHG +K GF ++ V ++L+ +
Sbjct: 281 LRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM 340
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ G D +F KM + +VSWT MISG +G
Sbjct: 341 HSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNG 376
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+ + S G D A +VFS++ + +W MI +G +A
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y +M G PD+ T V+ AC ++KG +H A + G + + V ++L+D+
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC +D ++F ++ ++V+SWT++I GL
Sbjct: 442 YSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL D L LLD+ G+ + A F+ V +WN+++ G A+
Sbjct: 524 LRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAV 582
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDL 123
L++ MI + PD+ TF ++ AC S + G E + K + ++ ++++DL
Sbjct: 583 ELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDL 642
Query: 124 YLKCGDVDGGRKMFDKMRV 142
+ G ++ + KM +
Sbjct: 643 LGRAGRLEDAYEFIKKMPI 661
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I L + G +AL+ + M ++ T+ +++ C A +G VH K
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + + L+ ++++ GD+ +F KM R + SW ++ G A +G D A
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA 179
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 96/161 (59%), Gaps = 4/161 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL ++ +L KL + G+ D ++ VF+ P+VF+++ +I + +A
Sbjct: 70 LLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRA 129
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
Y+ M+ G P+ FTF V+K+C ++E GK +H A+K G D++V++ L+D+
Sbjct: 130 FGYYSQMLSCGVEPNAFTFSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDV 185
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y + GDV R++FDKM RS+VS TTM++ + G+LD A
Sbjct: 186 YARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKA 226
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Query: 12 DQLLVRKLLDLCSF------YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ R L+ L + G+ D A +F ++ V WN+MI G ++L
Sbjct: 200 DKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLK 259
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M+ P++ T V+ AC A+E G+ +H G ++ V + L+D+Y
Sbjct: 260 LFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYS 319
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ R +FD++R + VV+W +MI G A G
Sbjct: 320 KCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHG 353
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G + A LVF +IR V WN MI + G S AL L+ M G +P
Sbjct: 314 LIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPT 373
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF ++ AC +E+G+ L K G + +++L + G ++ +
Sbjct: 374 DITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLV 433
Query: 138 DKMRVRS-VVSWTTMI 152
M + + V W T++
Sbjct: 434 KNMTIAADPVLWGTLL 449
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++ GL D++ KLL C+ G +A VF +I P+ F WN MIR +
Sbjct: 40 QMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEP 99
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ALLLY+ M+ + + +TFPF++KAC + A+E+ +++H +K GF +++ ++L
Sbjct: 100 EEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSL 159
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR 143
+++Y K GD+ R +FD++ R
Sbjct: 160 LNVYSKSGDIKSARLLFDQVDQR 182
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 17/156 (10%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G ++ LL++ S G A L+F Q+ D +A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV-----------------DQRDTEA 186
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ M G + D ++AC +++GK +H K D + L+D+
Sbjct: 187 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 246
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGD++ ++F KM + V WT MISG A G
Sbjct: 247 YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 282
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ + D +L L+D+ + G + A+ VF ++ V W MI I G +A
Sbjct: 228 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 287
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-------ASLAIEKGKEVHGLAVKAGFSRDMFV 116
L + M G P++ TF ++ AC A L E + +H GF +
Sbjct: 288 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH------GFKPSIEH 341
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
++DL + G + ++ + M V+ + W +++ G+L+
Sbjct: 342 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 388
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Query: 16 VRKLLDLCSFYGKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+ LL L + G H LL+F+ P +V TW +I L+ QAL +N M
Sbjct: 135 INTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTT 194
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G P+ FTF ++ AC + + +G+++H L K F D FV + L+D+Y KCG +
Sbjct: 195 GIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLA 254
Query: 134 RKMFDKMRVRSVVSWTTMISGL 155
+FD+M R++VSW +MI G
Sbjct: 255 ENVFDEMPHRNLVSWNSMIVGF 276
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ ND + LLD+ + G A VF ++ ++ +WN MI + +A
Sbjct: 226 IHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRA 285
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ ++ G PD+ + V+ AC + ++ GK+VHG VK G ++V+++L+D+
Sbjct: 286 IGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDM 343
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y KCG + K+F R VV+W MI G
Sbjct: 344 YCKCGLFEDATKLFCGGGDRDVVTWNVMIMG 374
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V TWN+MI + QA + MI G PD+ ++ + A + A+ +G +H
Sbjct: 365 VVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHS 424
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
+K G ++ + S+L+ +Y KCG + ++F + + +VV WT MI+ G +
Sbjct: 425 HVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANE 484
Query: 164 A 164
A
Sbjct: 485 A 485
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 21 DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L + YGK A VF + + +V W MI G + +A+ L+ M+ G P
Sbjct: 440 SLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVP 499
Query: 78 DKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
+ TF V+ AC + I+ G K + +A + + ++DL + G ++ +
Sbjct: 500 EYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRF 559
Query: 137 FDKM 140
+ M
Sbjct: 560 IESM 563
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+FTWN R L G + AL+L+ M +G P+ TFPFV+KAC + + +H
Sbjct: 18 LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+K+ F ++FVQ+ +D+Y+KCG ++ +F +M VR + SW M+ G A SG LD
Sbjct: 78 HVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLD 136
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D +V L+ + S G A +F+ + +W +MI A G +A+
Sbjct: 284 VKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAM 343
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+N M G +PD T +I C + A+E GK + ++ G ++ V + L+D+Y
Sbjct: 344 TLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMY 403
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG + +++F M R+VVSWTTMI+ A +GD+ A
Sbjct: 404 AKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDA 443
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQ 62
IR G+ D + L+ S G A +F +I V +WN MI A ++
Sbjct: 181 IRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVK 240
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ Y M+ GF PD T ++ +C+ A+ G VH VK G D+ V +TL+
Sbjct: 241 AVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLIC 300
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCGDV R +F+ M ++ VSWT MIS A G + A
Sbjct: 301 MYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEA 342
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A VF ++ + +WN M+ G + L M +G RPD T +I
Sbjct: 102 GRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLI 161
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS 144
+ + ++ V+ ++ G D+ V +TL+ Y KCG++ +FD++ +RS
Sbjct: 162 DSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRS 221
Query: 145 VVSWTTMISGLA 156
VVSW +MI+ A
Sbjct: 222 VVSWNSMIAAYA 233
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I GL ++ ++ L+D+ + G + A +F + V +W MI A ++G AL
Sbjct: 385 INNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDAL 444
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDL 123
L+ +M+ G +P+ TF V++AC +E+G E + K G + + S ++DL
Sbjct: 445 ELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDL 504
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G + ++ M W+ ++S G ++
Sbjct: 505 LGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKME 544
>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
Length = 834
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I+ GL D + ++D+ G AL + +I + +WN +I +++ S +
Sbjct: 457 KAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEE 516
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M+ G +PD FT+ V+ +C IE GK++HG +K D F+ STL+D
Sbjct: 517 AQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVD 576
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG++ + MF+K++ VSW MI G A G
Sbjct: 577 MYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHG 613
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
G D + +LDL YGK A LVF ++ +WN +I AL + +
Sbjct: 361 GFDVDVCVRNAILDL---YGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTI 417
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ N M+ +G D FT+ V+KAC ++E G VHG A+K+G D FV ST++D+Y
Sbjct: 418 VHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMY 477
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
KCG + K+ D++ + +VSW ++I+G +
Sbjct: 478 CKCGMITEALKLHDRIGGQELVSWNSIIAGFS 509
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P V +WN ++ G + L M G PD+ T ++KAC + G ++
Sbjct: 126 PDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQI 185
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
H LAVK G D+ S L+D+Y KC ++ F M R+ VSW +I+G
Sbjct: 186 HALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAG 238
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 81 TFPFVIKACIAS--LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF V + C ++ A+ G+ H + +GF MFV + L+ +Y +CG +FD
Sbjct: 31 TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFD 90
Query: 139 KMRVRSVVSWTTMISGLAASGD 160
M R VSW TM++ A GD
Sbjct: 91 TMPHRDTVSWNTMLTAYAHMGD 112
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ S+D+++ ++D+ Y K D A F + V T N M+ L G
Sbjct: 272 IKNKFSSDRVVGTAIVDV---YAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGA 328
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ L+ M +G + V AC A GF D+ V++ ++
Sbjct: 329 EAMQLFQFMTRSGIGFGVVSLSGVFSAC---------------AEVKGFDVDVCVRNAIL 373
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
DLY KC + +F +M R VSW T+I+ L
Sbjct: 374 DLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAAL 407
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + D+ + L+D+ + G + L+F +++ +WN MI + G +
Sbjct: 558 QIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQGFE 617
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL ++ P+ TF V++AC
Sbjct: 618 ALEMFERTQKANVAPNHATFVAVLRAC 644
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C A + +++H A+K FS D V + ++D+Y K + R+ F + +V +
Sbjct: 255 CKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETC 314
Query: 149 TTMISGLAASG 159
M+ GL +G
Sbjct: 315 NAMMVGLVRTG 325
>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
Length = 627
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G + A +F ++ +V +W MI L +G + +AL L+ +M+ + PD FTF V
Sbjct: 286 GCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSV 345
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + ++ G+ VH A ++GF+ ++V ++LMD+Y KCGDV+GG +F + + +
Sbjct: 346 LHACATAASLASGRMVHCRAFRSGFAAYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKDL 405
Query: 146 VSWTTMISGLAASG 159
VSW TM+ G A +G
Sbjct: 406 VSWNTMLFGFAING 419
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 13 QLLVRKLLDLCSF---YGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
++ R L CS Y +DH +L +F Q+ + WN ++ + G++ Q LLL
Sbjct: 134 EMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNANQCLLL 193
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+N M G D T + AC G +H +AV++G+S V ++L+ LY K
Sbjct: 194 FNKMRAEGMACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSLISLYSK 253
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMI 152
+D ++F+ M VR++VSW ++I
Sbjct: 254 FSLLDDAVRIFESMEVRTIVSWNSLI 279
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ R G + + L+D+ + G + VF I + +WN M+ I+G + +
Sbjct: 364 RAFRSGFAAYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKDLVSWNTMLFGFAINGWANE 423
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMF 115
AL++Y+ M + PD+ TF ++ AC S +E G+ VHG+ K
Sbjct: 424 ALVVYDSMKSHEVCPDEVTFAGLLTACNHSGLLEHGESFFESMVSVHGIQPKPEH----- 478
Query: 116 VQSTLMDLYLKCGDVDGGRKMFD 138
S ++D+Y + G++ +M D
Sbjct: 479 -LSCILDMYARSGNITKAMEMLD 500
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN M+ A G AL L++ PD F+ + A A + G ++H
Sbjct: 45 AWNAMLTAYVRAGQPRDALTLFS----RAPAPDAFSLTAALSAAAALRSPVAGAQLHARL 100
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
++AG + V +TL+D+Y KC D + F +MR R+ +SW +++ S L
Sbjct: 101 IRAGLRALLPVGNTLVDMYAKCARADDAARAFGEMRERNALSWCSLLHAYVVSDHL 156
>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
Length = 641
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 89/156 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G SND LV LL+ + A+ +F I V +W+ +I +G++ +A
Sbjct: 170 VIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEA 229
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL++N M+ +G P+ T V++AC A+ +E+G++ H LA++ G ++ V + L+D+
Sbjct: 230 LLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDM 289
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KC + +F ++ + VVSW +ISG +G
Sbjct: 290 YMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNG 325
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL + + L+D+ + A VFS+I V +W +I T++G + +++
Sbjct: 272 IRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSI 331
Query: 65 LLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+++M+ N RPD V+ +C +E+ K H +K GF + F+ ++L++L
Sbjct: 332 EEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVEL 391
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG + K+F+ + ++ V WT++I+G G
Sbjct: 392 YSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHG 427
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
++ WN ++++L+ + + L ++ M + +PD FT P +KAC + G+ +HG
Sbjct: 6 LYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHG 65
Query: 104 LAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K D++V S+L+ +Y+KCG + +MFD++ +V+W++M+SG +G
Sbjct: 66 FVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNG 122
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G+ AL +F ++ P + TW+ M+ +GS QA+ + M+ + PD+ T +
Sbjct: 91 GRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITL 150
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC G+ VHG ++ GFS D+ + ++L++ Y K +F + + V
Sbjct: 151 VSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDV 210
Query: 146 VSWTTMISGLAASG 159
+SW+T+I+ +G
Sbjct: 211 ISWSTVIACYVQNG 224
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+YG ++ + L++L S G +A VF+ I W +I I G +A
Sbjct: 373 VIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKA 432
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLM 121
L +N M+ + +P++ TF ++ AC + I +G + L V + ++ + L+
Sbjct: 433 LETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLV 492
Query: 122 DLYLKCGDVDGGRKMFDKM 140
DL + GD+D ++ +M
Sbjct: 493 DLLGRVGDLDTAIEITKRM 511
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R+ L + +L KL S G +H+L +F+Q + P+VF + +I A T QA
Sbjct: 57 LYRHNLHHHPILSFKLQRSYSSLGHLNHSLTLFNQTQNPNVFFYTSIIHAHTFHKLHYQA 116
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL Y M+ P+ FTF ++K+C +E + +H A+K G D++V++ L+D+
Sbjct: 117 LLFYAQMLTQKVTPNAFTFSSILKSC----PLEFAQIIHAQAIKFGLDSDLYVRTCLVDV 172
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y + GD R +FD++ +S+VS T MI+ A G + A
Sbjct: 173 YARGGDFVSARNLFDEIPEKSLVSSTAMITCFAKHGMVKEA 213
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G A ++F + + WN+MI G + + L+L+ M+ + RP + T V
Sbjct: 207 HGMVKEARVLFDGLEDRDLVCWNVMIDGYVQHGLANEGLVLFRQMLKDRVRPSEVTVLAV 266
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A+E G+ VH G + V S L+D+Y KCG+++ R +F++++ + V
Sbjct: 267 LSACGQIGALESGRWVHSYIQNNGIEINAHVGSALIDMYSKCGNLEDARLVFERIKYKDV 326
Query: 146 VSWTTMISGLAASG 159
V W +M++G A G
Sbjct: 327 VVWNSMVTGYATHG 340
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G + A LVF +I+ V WN M+ G S AL L+N M G++P
Sbjct: 301 LIDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQPT 360
Query: 79 KFTFPFVIKAC 89
TF V+ AC
Sbjct: 361 DITFIGVLSAC 371
>gi|212275378|ref|NP_001130377.1| uncharacterized protein LOC100191472 [Zea mays]
gi|194688970|gb|ACF78569.1| unknown [Zea mays]
Length = 361
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G + A +F ++ +V +W MI L +G + +AL L+ +M+ + PD FTF V
Sbjct: 20 GCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSV 79
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + ++ G+ VH A ++GF+ ++V ++LMD+Y KCGDV+GG +F + + +
Sbjct: 80 LHACATAASLASGRMVHCRAFRSGFAAYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKDL 139
Query: 146 VSWTTMISGLAASG 159
VSW TM+ G A +G
Sbjct: 140 VSWNTMLFGFAING 153
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ R G + + L+D+ + G + VF I + +WN M+ I+G + +
Sbjct: 98 RAFRSGFAAYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKDLVSWNTMLFGFAINGWANE 157
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMF 115
AL++Y+ M + PD+ TF ++ AC S +E G+ VHG+ K
Sbjct: 158 ALVVYDSMKSHEVCPDEVTFAGLLTACNHSGLLEHGESFFESMVSVHGIQPKPEH----- 212
Query: 116 VQSTLMDLYLKCGDVDGGRKMFD 138
S ++D+Y + G++ +M D
Sbjct: 213 -LSCILDMYARSGNITKAMEMLD 234
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R + ++L+D Y+K G V+ +F ++ +V+SWT MI GLA +G D A
Sbjct: 4 RTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEA 56
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 8 GLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
GL + + KL+ C S G +A L+FSQI+ P++F +N +IRA + + AL
Sbjct: 31 GLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLIRAYSRSSTPQLALH 90
Query: 66 LYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMDL 123
+ LM+ + PD+ TFPF+I AC SL + GK++H +K G S D VQ+ L+
Sbjct: 91 YFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRF 150
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +C + RK+FD++ VV W +++G G
Sbjct: 151 YAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRG 186
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F +I V WN+++ G + +AL + M+ +G PD+F +K C A
Sbjct: 163 LFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGA 222
Query: 95 IEKGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+++GK +H K + D+F+ + L+D+Y KCG +D ++F+ M R+V SW+ MI
Sbjct: 223 LQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIG 282
Query: 154 GLAASGDLDAA 164
G A G + A
Sbjct: 283 GFALHGHVRKA 293
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL- 64
R L D + L+D+ + G D ++ VF + +VF+W+ MI + G +A+
Sbjct: 236 RKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQ 295
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDL 123
L + + +G RPD VI AC + E+G+ + + + G S ++DL
Sbjct: 296 CLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDL 355
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G +D K+ +M ++ + W ++SG ++D A
Sbjct: 356 LCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLA 397
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG---SSLQALLLY 67
ND ++ +L + + G + A VF ++ V TW MI + DG S+ AL+L+
Sbjct: 124 NDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLF 183
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G RP++F ++K C + GK++HG K GF ++FV S+L+D+Y +C
Sbjct: 184 LEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARC 243
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G++ R +FD++ ++ VSW +ISG A G+ + A
Sbjct: 244 GELRESRLVFDELESKNEVSWNALISGFARKGEGEEA 280
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 81/154 (52%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+YG + + L+D+ + G+ + LVF ++ + +WN +I G +AL
Sbjct: 223 KYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALG 282
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M GF +FT+ ++ + + ++E+GK +H +K+G +V +TL+ +Y
Sbjct: 283 LFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYA 342
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G++ +K+FD++ VVS +M+ G A G
Sbjct: 343 KSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHG 376
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 66/110 (60%)
Query: 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM 114
+++ +S L + +L+ PD+ + ++K C +++GK VH + + F D+
Sbjct: 67 SLNPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDL 126
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++++++ +Y KCG ++ R++FD+M V+ VV+WT+MI+G + G +A
Sbjct: 127 VIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSA 176
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I + L +D LV LL F+ +T ++ L+FS + P++F +N +I + +
Sbjct: 36 LINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHET 95
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ + +G FTFP V+KAC + + + G ++H L VK GF+ D+ ++L+ +
Sbjct: 96 LDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSI 155
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y G ++ K+FD++ RSVV+WT + SG SG
Sbjct: 156 YSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 84/155 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++D + LL + S G+ + A +F +I V TW + T G +A
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREA 196
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G +PD + V+ AC+ ++ G+ + + ++ FV++TL++L
Sbjct: 197 IDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNL 256
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG ++ R +FD M + +V+W+TMI G A++
Sbjct: 257 YAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 76/143 (53%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L + GK + A VF + + TW+ MI+ + + + L+ M+ +PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F+ + +C + A++ G+ L + F ++F+ + L+D+Y KCG + G ++F
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 139 KMRVRSVVSWTTMISGLAASGDL 161
+M+ + +V ISGLA +G +
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHV 395
>gi|255572347|ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533535|gb|EEF35275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 364
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 68/125 (54%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A+ F QI P WN ++R L + + Y MI ++ D T FV+KAC
Sbjct: 56 AIKAFYQILTPSTNDWNAVLRGLIQSPDPIDSFKWYKTMIRGSYKVDALTCSFVLKACAR 115
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
LA + ++H V+ GF D + +TL+DLY K GD+D +KMFD+M V+ + SW +
Sbjct: 116 VLAFSESTQLHSHIVRKGFVADALLGTTLLDLYAKTGDLDSAQKMFDEMIVKDIASWNAL 175
Query: 152 ISGLA 156
ISG A
Sbjct: 176 ISGFA 180
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G D LL LLDL + G D A +F ++ + +WN +I +A
Sbjct: 129 IVRKGFVADALLGTTLLDLYAKTGDLDSAQKMFDEMIVKDIASWNALISGFAQGNKPSEA 188
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M GF+P++ T + AC A ++G+++H ++ V + +D+
Sbjct: 189 LGLFKRMEVLGFKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDMNVQVCNAAIDM 248
Query: 124 YLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
Y KCG D +F+ M +S+V+W TMI A GD D A
Sbjct: 249 YAKCGFADKAYLVFESMSCGKSLVTWNTMIMAFAMHGDGDKA 290
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 20 LDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+D+ + G D A LVF + C + TWN MI A + G +AL L+ M G PD
Sbjct: 246 IDMYAKCGFADKAYLVFESMSCGKSLVTWNTMIMAFAMHGDGDKALKLFKYMHQEGVSPD 305
Query: 79 KFTFPFVIKACIASLAIEKGKE 100
++ V+ AC S GKE
Sbjct: 306 AVSYLAVLCACNHS-----GKE 322
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVF--SQIRC-PHVFTWNLMIRALTIDGS 59
+II G L +++ + + +G A VF S I C ++ WN ++RA G
Sbjct: 56 QIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGY 115
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL +Y M G D FTFP VI+AC + + + VHG V+ GF ++ V +
Sbjct: 116 CEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNE 175
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LM +Y K G +D RK+F++M VRS VSW TM+SG A + D A
Sbjct: 176 LMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGA 220
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P++ TW ++ + G ++ + L+ M G V+ + A ++GK +
Sbjct: 234 PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVI 293
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
HG VK GF +FV+++L+ LY K G+V+ R +F +++ +++VSW +IS A G
Sbjct: 294 HGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWC 353
Query: 162 DAA 164
D A
Sbjct: 354 DEA 356
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 27 GKTDHALLVFSQIRC--------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
G D A +F Q+ P+V +W+ +I G +AL L+ M + +
Sbjct: 351 GWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKAN 410
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V+ C A+ G+E+HG V++ ++ V + L+++Y K G G +F+
Sbjct: 411 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFE 470
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K+ + ++SW TM++G G
Sbjct: 471 KIENKDLISWNTMVAGYGIHG 491
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + + L+ L+++ + G LVF +I + +WN M+ I G A
Sbjct: 437 VVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENA 496
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ ++ MI +GF PD TF V+ AC + + +G+E+ +K M + ++D
Sbjct: 497 IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVD 556
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
L + G + K+ M V
Sbjct: 557 LLGRAGLLQEASKVVKSMPVE 577
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 90/162 (55%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ GL+++ + L+++ + K + A VF + ++ WN M+ +G + +
Sbjct: 374 QAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASK 433
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L++ M GF PD+FT+ ++ AC +E G+++H +K F ++FV++TL+D
Sbjct: 434 VMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVD 493
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG ++ R+ F+ +R R VSW +I G D D A
Sbjct: 494 MYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEA 535
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ +++G + L ++DL + G + A F+Q+ + WN ++ + GS Q
Sbjct: 106 QTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQ 165
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ + + G P++FT+ V+ +C + I+ GK+VH +K GF + F + +L+D
Sbjct: 166 VIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLID 225
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG + RK+FD + VSWT MI+G G
Sbjct: 226 MYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVG 262
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II++ + + L+D+ + G + A F IR +WN +I + +A
Sbjct: 476 IIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEA 535
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ MI +G PD+ + ++ C A+E+G++VH VK+G ++ S+L+D+
Sbjct: 536 FNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDM 595
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
Y+KCG ++ R +F M RSVVS +I+G A + ++A
Sbjct: 596 YVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEA 635
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 28 KTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
KTD A ++FS+ + P W +I T +G S +AL LY M N RPD+ TF V+
Sbjct: 703 KTD-ADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVL 761
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-V 145
+AC ++ G+ +H L G D S ++D+Y KCGD+ ++F++M ++ V
Sbjct: 762 RACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDV 821
Query: 146 VSWTTMISGLAASGDLDAA 164
+SW +MI G A +G + A
Sbjct: 822 ISWNSMIVGFAKNGYAENA 840
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
MQK+ GL DQ+ ++ C G+ D A +F Q+ +V WN+MI G
Sbjct: 274 MQKL---GLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCD 330
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++A+ + M G + + T V+ A + A+ G VH A+K G + +++V S+L
Sbjct: 331 IEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSL 390
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+++Y KC ++ +K+FD + R++V W M+ G A +G
Sbjct: 391 INMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNG 429
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQ 62
I GL +D+L ++D+ + G ++ VF ++ + V +WN MI +G +
Sbjct: 780 IFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAEN 839
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLM 121
AL +++ M RPD TF V+ AC + + +G+E+ + V + + + ++
Sbjct: 840 ALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMI 899
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGD 160
DL + G + + DK+ + + W T++ GD
Sbjct: 900 DLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGD 939
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 56 IDGSSLQALLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM 114
++ +S + + L IC + K PF + A K +H +K GF
Sbjct: 57 VNQTSEHKIFTHLLKICLQQCQRIKIRHPFDETPQRLAQASRTSKTIHAQTLKFGFGSKG 116
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
+ S ++DLY KCG+V+ K F+++ R +++W +++S + G L+
Sbjct: 117 RLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLE 164
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL L+D+ G + A VFS + V + N +I ++A
Sbjct: 577 LVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYA-QNDLVEA 635
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM-FVQSTLMD 122
+ L+ M G P + TF ++ AC + G+++H L K G D F+ +L+
Sbjct: 636 IDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLV 695
Query: 123 LYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASG 159
+Y+ +F + + +S + WT +ISG +G
Sbjct: 696 MYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNG 733
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 36/161 (22%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + L+D+ S G A +F + P +W MI G +A
Sbjct: 208 VIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEA 267
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M G PD+ F VI AC+ GL
Sbjct: 268 LKVFEDMQKLGLVPDQVAFVTVITACV------------GL------------------- 296
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
G +D +F +M +VV+W MISG G D++A
Sbjct: 297 ----GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEA 333
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
++A VF QI P+ WN M R + + S ++L+ M P+ FTFP ++K+C
Sbjct: 2 ENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSC 61
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+ A+++G+EVH +K+GF + FV +TL+D+Y G + ++F +M R+V++WT
Sbjct: 62 VKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWT 121
Query: 150 TMISGLAASGDLDAA 164
MI+G DL A
Sbjct: 122 AMINGYITCCDLVTA 136
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKACIASL 93
+F ++ +VF+WN +I T +G + L + M+ +G P+ T V+ AC
Sbjct: 201 LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLG 260
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
A++ GK VH A G+ +++V++ LMD+Y KCG V+ +F M + ++SW T+I
Sbjct: 261 ALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIG 320
Query: 154 GLAASG 159
GLA G
Sbjct: 321 GLAVHG 326
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+D+ + G A VF ++ +V W MI + A
Sbjct: 77 VIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTA 136
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++L D + +I I + + + +E+ ++D+ +T+++
Sbjct: 137 RRLFDL----APERDIVLWNTMISGYIEAKDVIRARELFDKMP----NKDVMSWNTVLNG 188
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y GDV ++F++M R+V SW +I G +G
Sbjct: 189 YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNG 224
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G + + L+D+ + G + AL VF + + +WN +I L + G AL L
Sbjct: 275 HGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNL 334
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
++ M G PD TF ++ AC +E G
Sbjct: 335 FSHMKIAGENPDGITFIGILCACTHMGLVEDG 366
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL + +G A VF ++ +F+WN+++ G +AL LY+ M+ G RPD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+TFP V++ C + +G+EVH ++ GF D+ V + L+ +Y+KCGD+ R +FD
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254
Query: 139 KMRVRSVVSWTTMISG 154
+M R +SW MISG
Sbjct: 255 RMPRRDRISWNAMISG 270
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL++ ++ L+D+ S D AL VF +I +V +W +I L ++ S +AL
Sbjct: 425 RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALF 484
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ MI + +P+ T V+ AC A+ GKE+H A++ G D F+ + L+D+Y+
Sbjct: 485 FFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYV 543
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CG ++ F+ + V SW +++G A G
Sbjct: 544 RCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQG 576
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IRYG +D +V L+ + G A LVF ++ +WN MI + L+
Sbjct: 221 VIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEG 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ +M PD T VI AC A G+EVHG +K GF ++ V ++L+ +
Sbjct: 281 LRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM 340
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ G D +F KM + +VSWT MISG +G
Sbjct: 341 HSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNG 376
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+ + S G D A +VFS++ + +W MI +G +A
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y +M G PD+ T V+ AC ++KG +H A + G + + V ++L+D+
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC +D ++F ++ ++V+SWT++I GL
Sbjct: 442 YSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL D L LLD+ G+ + A F+ V +WN+++ G A+
Sbjct: 524 LRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAV 582
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDL 123
L++ MI + PD+ TF ++ AC S + G E + K + ++ ++++DL
Sbjct: 583 ELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDL 642
Query: 124 YLKCGDVDGGRKMFDKMRV 142
+ G ++ + KM +
Sbjct: 643 LGRAGRLEDAYEFIKKMPI 661
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I L + G +AL+ + M ++ T+ +++ C A +G VH K
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + + L+ ++++ GD+ +F KM R + SW ++ G A +G D A
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA 179
>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
Length = 694
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
LS+D ++ ++++ G+ D A +F ++ +WN MI A + G + QA L
Sbjct: 385 LSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSE 444
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M G PD+ TF ++ AC+A A+ +GK +H + +G +D V + L++ Y KCG
Sbjct: 445 RMRREGVLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCG 504
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++D +F + R VVSW +I+G A +G
Sbjct: 505 NLDTATSLFGALDYRDVVSWNGIIAGFAHNG 535
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ D A+ VFS++R + +WN I A G L L M G PDK TF +
Sbjct: 61 RADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALN 120
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
ACI S ++ G+ +H L ++ G D+ + + L+ +Y +CG ++ R++F +M R+VVS
Sbjct: 121 ACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVS 180
Query: 148 WTTMIS 153
W M++
Sbjct: 181 WNAMVA 186
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G+ D +L L+ + G + A +F ++ +V +WN M+ + T++ +A
Sbjct: 138 VLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEA 197
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M+ P + +F V+ A A+ +G+ +H + + + V + L+
Sbjct: 198 IELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVT 257
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG V ++F M R +VSW MIS A SG
Sbjct: 258 MYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSG 294
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI G AL ++ M+ G R ++ TF ++ C + + +G+ +H
Sbjct: 317 VISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRALLRQGETIHR 376
Query: 104 LAV--KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+ S D V + ++++Y KCG++D R +F+ R++ SW +MIS A G
Sbjct: 377 CVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRA 436
Query: 162 DAA 164
+ A
Sbjct: 437 EQA 439
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II GL D ++ L++ S G D A +F + V +WN +I +G + +
Sbjct: 480 RIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHARE 539
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL LM +G RPD TF ++ A A + G + +AV R + ++
Sbjct: 540 ALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMI 599
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
DL + G + MR VSW T++S GD + A
Sbjct: 600 DLLGRAGRIGEAEYFVSAMRDEDKEVSWMTLLSACEVHGDEERA 643
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCG 128
M + P++ TF +++AC + +E GK++H ++ D+ V + +M +Y KC
Sbjct: 1 MAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCE 60
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D +F +MR R ++SW I+ A SGD
Sbjct: 61 RADLAMAVFSEMRERDLISWNNAIAANAESGD 92
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRAL-TIDGSSLQALLLYNLMICNGFRP 77
L+ + + +G D AL +F ++ +V TW ++ AL DG +AL M +G P
Sbjct: 121 LVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAP 180
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ +TF V+ AC + +H VK G D+FV+S+L+D Y+K GD+DGGR++F
Sbjct: 181 NAYTFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVF 237
Query: 138 DKMRVRSVVSWTTMISGLAASGD 160
D+M R +V W ++I+G A SGD
Sbjct: 238 DEMVTRDLVVWNSIIAGFAQSGD 260
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +D + L+D G D VF ++ + WN +I G + A+
Sbjct: 206 VKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAI 265
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M GF ++ T V++AC + +E G++VH +K + RD+ + + L+D+Y
Sbjct: 266 ELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMY 323
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ +F +M R V+SW+TMISGLA +G
Sbjct: 324 CKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNG 358
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++Y D +L LLD+ G + A +F ++ V +W+ MI L +G S +A
Sbjct: 306 VLKY--ERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEA 363
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L +++LM G P++ T V+ AC + +E G + G + + ++D
Sbjct: 364 LRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVD 423
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG--LAASGDLDA 163
L + G +D + M + V W T++ + SG+L A
Sbjct: 424 LLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAA 467
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGK------EVHGL--AVKAGFSRDMFVQSTLMDLYLKC 127
R D + ++K C+ G+ E HG G +FV ++L+ +Y K
Sbjct: 69 RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G +D ++FD+M R+VV+WTT+++ LA
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALA 157
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S D + L+D+ S G A VFS + ++ TWN +I +G + +AL ++
Sbjct: 179 STDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVR 238
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCG 128
M+ +G PD+ T V+ AC + A+++G ++H VK F D+ + + L+D+Y KC
Sbjct: 239 MMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCS 298
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V+ R++FD+M +R+VVS T+M+SG A + + AA
Sbjct: 299 KVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAA 334
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 24/128 (18%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +FS++ +V +WN +I T +G + +AL L+ L+ P +TF ++K+
Sbjct: 334 ARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS--- 390
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
D+FV ++L+D+Y+KCG ++ G ++F+KM+ R VSW +
Sbjct: 391 ---------------------DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAI 429
Query: 152 ISGLAASG 159
I G A +G
Sbjct: 430 IVGYAQNG 437
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+ + + G D A +F + P +WN M+ ++L + M F +
Sbjct: 87 LISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLN 146
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+++F + AC + + G +VH L K+ +S D+++ S L+D+Y KCG V ++F
Sbjct: 147 EYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS 206
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R++V+W ++I+ +G A
Sbjct: 207 GMIERNLVTWNSLITCYEQNGPASEA 232
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
+ P+ F ++ +C+ S + + VH + FS ++F+Q+ L+D+Y KC +D R
Sbjct: 11 YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD+M R+ +W ++IS L SG LD A
Sbjct: 71 KLFDRMPQRNTFTWNSLISVLTKSGFLDEA 100
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L +D + L+D+ G + VF +++ +WN +I +G +AL ++
Sbjct: 388 LKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFR 447
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGK------EVHGLAVKAGFSRDMFVQSTLMD 122
M+ G +PD T V+ AC + +E+G+ E HGL +D + + ++D
Sbjct: 448 KMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPL----KDHY--TCMVD 501
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
L + G ++ + + + M V V W ++++ G+++
Sbjct: 502 LLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIE 542
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 74/135 (54%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G HA +F I P +N +IRA +AL L+ M+ G P++FT PFV
Sbjct: 59 HGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFV 118
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+KAC + A E VHG+A++ G +FV + L+ Y G + R+ FD+M R+V
Sbjct: 119 VKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNV 178
Query: 146 VSWTTMISGLAASGD 160
VSW +MI G A +GD
Sbjct: 179 VSWNSMIGGYAQAGD 193
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL + LL + G + F ++ +V +WN MI G + +
Sbjct: 139 LRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVC 198
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M GF D+FT ++ AC +E G+ VH + +G D+ ++S L+D+Y
Sbjct: 199 SLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMY 258
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD+ R+ F+ M ++SVVSWT+M+ G ++AA
Sbjct: 259 GKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAA 298
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G + A F + ++ +WN MI G +AL LYN M G PD+ T V
Sbjct: 292 HGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAV 351
Query: 86 IKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+ A I L + GK VH ++ D+ + ++L+D+Y KCG VD +F +M R
Sbjct: 352 LSASGRIGDLTV--GKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNR 409
Query: 144 SVVSWTTMISGLAASG 159
+VVSW +I GLA G
Sbjct: 410 NVVSWNVIIGGLAMHG 425
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 5 IRYGLSN-DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IR + N D LV LLD+ + G+ D A+ +FS++ +V +WN++I L + G +L
Sbjct: 371 IRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDT 430
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-----HGLAVKAGFSRDMFVQS 118
+ + M+ + F PD TF ++ AC +E G+ H VK ++ +
Sbjct: 431 ITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVK----HEVEHYA 486
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
++DL + G ++ + +M ++ VV W ++ G++
Sbjct: 487 CMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNV 530
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G ND + L+D+ + + D+++ VF WN M+ +GS +AL
Sbjct: 514 IKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEAL 573
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G RP TF +I A + GK++H ++A F+ ++F+ S+L+D+Y
Sbjct: 574 GIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMY 633
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG+VD R++F+ ++ +VSWT MI G A G
Sbjct: 634 CKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 668
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 66/130 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ +WN +I +AL + M +GF PD FT V+
Sbjct: 443 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 502
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
I++G VHG A+K GF D+FV S+L+D+Y C +D K+FD V W +M++G
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 562
Query: 155 LAASGDLDAA 164
A +G ++ A
Sbjct: 563 YAQNGSVEEA 572
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR +++ + L+D+ G D A VF+ I+ P + +W MI + G + +A
Sbjct: 614 LIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEA 673
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+L+ M +P+ TF V+ AC + ++ G K + ++ + GF + + L D
Sbjct: 674 FVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALAD 733
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ GD+D +M+++ S W+T++
Sbjct: 734 TLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 764
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 26/168 (15%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVF-TWNLMIRALTIDGSSLQALLLYNLMI 71
QLL K+ + S ++ ++ + + PH +W IR G L A+ L+ L +
Sbjct: 298 QLLALKV-KISSHRSHSNCYIMSLAAVASPHFPPSWAYQIRMAASQGQFLHAISLF-LQM 355
Query: 72 CNGFRPDK---FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
P + P +K+C +H LA+++G D F + L++L +K
Sbjct: 356 RASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLP 415
Query: 129 DV-----------DGG---------RKMFDKMRVRSVVSWTTMISGLA 156
+GG RK+FD+M R VSW T+I G A
Sbjct: 416 GFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCA 463
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDG 58
+I GL + + LL C S G HA L+F P WN +IR +
Sbjct: 26 SHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYLIRGFSNSS 85
Query: 59 SSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
S L ++L YN M+ + RPD FTF F +K+C +I K E+HG +++GF D V
Sbjct: 86 SPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVA 145
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+ Y G V+ K+FD+M VR +VSW MI + G
Sbjct: 146 TSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G +D ++ L+ S G + A VF ++ + +WN+MI + G QA
Sbjct: 133 VIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y M G D +T ++ +C A+ G +H +A +FV + L+D+
Sbjct: 193 LSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDM 252
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ +F+ MR R V++W +MI G G
Sbjct: 253 YAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHG 288
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G ++A+ VF+ +R V TWN MI + G ++A+ + M+ +G RP+
Sbjct: 249 LIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKM 136
TF ++ C +++G E H + + F V+ ++DLY + G ++ +M
Sbjct: 309 AITFLGLLLGCSHQGLVKEGVE-HFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEM 367
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL + + L+D+ + + + VF+ + +WN +I +G + L
Sbjct: 327 IRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 386
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M+ +P ++F ++ AC + GK++HG + GF ++F+ S+L+D+Y
Sbjct: 387 KFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMY 446
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD-LDA 163
KCG++ R++FD+MR+R +VSWT MI G A G LDA
Sbjct: 447 AKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDA 486
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D +F + + +WN +I +G + L + M +PD FT V+
Sbjct: 251 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLI 310
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ I KGKE+HG +++ G +++V S+L+D+Y KC V ++F + R +SW
Sbjct: 311 AENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWN 370
Query: 150 TMISGLAASGDLD 162
++I+G +G D
Sbjct: 371 SIIAGCVQNGLFD 383
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+L +F+ + P W +IR T G ++L + M+ +G PD FP V+KAC
Sbjct: 61 SLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAM 120
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD-------GGRKMFDKM--RV 142
+ + G+ +HG ++ G D++ + LM++Y K + G ++ D+M R
Sbjct: 121 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERT 180
Query: 143 RSVVSWTTMI 152
RSV + + ++
Sbjct: 181 RSVRTASVLV 190
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R G + + L+D+ + G A +F ++R + +W MI + G +L A
Sbjct: 427 ITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDA 486
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G P+ F V+ AC A L E K + + + G + + + + D
Sbjct: 487 IELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSD 546
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G ++ M + S W T++S ++D A
Sbjct: 547 LLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMA 589
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ GL +D + L+D+ + G+ + AL VF ++ WN +I + S A
Sbjct: 137 IIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 196
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M GF ++ T V++AC +E G + H VK + +D+ + + L+D+
Sbjct: 197 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDM 254
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ R++F++M+ R V++W+TMISGLA +G
Sbjct: 255 YCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNG 290
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
LV L+++ + + A +F Q+ +V +W MI A + +AL L LM+ +G
Sbjct: 50 LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDG 109
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RP+ +T+ V++AC + + +H +K G D++V+S L+D++ K G+ +
Sbjct: 110 VRPNVYTYSSVLRACNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDAL 166
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M + W ++I G A + D A
Sbjct: 167 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 196
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 16/157 (10%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++Y D +L L+D+ G + A VF+Q++ V TW+ MI L +G S +A
Sbjct: 238 IVKY--DQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEA 295
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
L L+ LM +G +P+ T V+ AC + +E G K+++G+ R+ +
Sbjct: 296 LKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI----NPGREHY- 350
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMI 152
++DL K G +D K+ ++M V+W T++
Sbjct: 351 -GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
+G D T+ +IK C++ A+ +G + G MF+ + L+++Y+K ++
Sbjct: 7 HGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLND 66
Query: 133 GRKMFDKMRVRSVVSWTTMISGLA 156
++FD+M R+V+SWTTMIS +
Sbjct: 67 AHQLFDQMPQRNVISWTTMISAYS 90
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDL-CSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSS 60
+++ GL D + K+++ +F D+A Q F +N +I
Sbjct: 27 QLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLINGYVGGEFP 86
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A+ +Y M+ +GF PD FTFP ++KAC +G++VHG+ VK G D +VQ++L
Sbjct: 87 QMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSL 146
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y CGD K+FD+M VR VVSW ++ISG +G D A
Sbjct: 147 IRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEA 190
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L +LD+ G A +F ++ + +W +MI L Q+L L+++M
Sbjct: 238 VLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTL 297
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G PD V+ AC + ++ G VH + G D+ + + ++D+Y KCG ++
Sbjct: 298 GISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMA 357
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+F M R+ +W ++ GLA G + A
Sbjct: 358 LKIFYSMSQRNTFTWNALLCGLAMHGLVHEA 388
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + L+ G A VF ++ V +WN +I G +A
Sbjct: 131 VVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEA 190
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M P T V+ AC + + GK +HG+ ++ F ++ + + ++D+
Sbjct: 191 ISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHGV-IERRFKVNLVLGNAMLDM 246
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y+K G + +FD++ R +VSWT MI+GL S
Sbjct: 247 YVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQS 281
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I + G+ D + ++D+ + G + AL +F + + FTWN ++ L + G
Sbjct: 327 EYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVH 386
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTL 120
+AL L+ +MI +G +P++ TF ++ AC +++G++ ++ + +
Sbjct: 387 EALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCM 446
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+DL+ + G ++ ++ M ++ V+ W +++ G+++
Sbjct: 447 IDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIE 489
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 23 CSFYGKTD-----HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
C+ G+ HA +F ++ P F +N +IRA + G +AL L+ ++ G P
Sbjct: 46 CALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILP 105
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++FT PFV+KAC + A E HG+A+K G+ R +FV + L+ G + R++F
Sbjct: 106 NEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLF 165
Query: 138 DKMRV-RSVVSWTTMISGLAASGDLDAA 164
+M R+VVSW TMI G A +G+ A
Sbjct: 166 AEMAPHRNVVSWNTMIGGCAQAGETSEA 193
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH V +WN MI G + +A L+ M G D FTF ++ C +E G+
Sbjct: 170 PHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGR 229
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VH + +G D+ + + L+D+Y KCGD+ + FD M +++VVSWT+M+ LA G
Sbjct: 230 LVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHG 289
Query: 160 DLDAA 164
+DAA
Sbjct: 290 SVDAA 294
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Query: 22 LCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
LC+ +G D A F Q+ ++ +WN MI G + L LYN M G PD+
Sbjct: 282 LCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDE 341
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
T V+ + + G+ +H + + V ++L+D+Y +CG VD +F +
Sbjct: 342 VTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTE 401
Query: 140 MRVRSVVSWTTMISGLAASGDLDAA 164
M ++ +SW +I LA G A
Sbjct: 402 MPNKNTISWNVIIGALAMHGRAQEA 426
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 51/85 (60%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
++ L+D+ + G+ D ++ +F+++ + +WN++I AL + G + +A++ + M+ +
Sbjct: 378 VLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDA 437
Query: 75 FRPDKFTFPFVIKACIASLAIEKGK 99
F PD+ TF ++ AC +E G+
Sbjct: 438 FSPDEITFVGLLSACSHGGLLEDGQ 462
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
D +++ C+ + D HA L+F + F WN M+RA T L LY
Sbjct: 44 DPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKY 103
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ GF P+ +TF F+++AC + G +H AV+ G+ FVQ+ L+ LY C
Sbjct: 104 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 163
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D R++FD R VV+WT +I+G A SG + A
Sbjct: 164 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVA 198
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F ++ + +W+ MI G +AL L+N M GFRP+ +
Sbjct: 193 GQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGAL 252
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+++G+ +H + D + + L+D+Y KCG V+ ++FD+M R V
Sbjct: 253 TACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVF 312
Query: 147 SWTTMISGLAASG 159
++T++ISGLA G
Sbjct: 313 AFTSLISGLANHG 325
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D++L L+D+ + G + A VF ++ VF + +I L G S A+ ++ M
Sbjct: 279 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 338
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG 98
G P++ TF ++ AC +E+G
Sbjct: 339 NEGVCPNEVTFICLLSACSRVGLVEEG 365
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
D +++ C+ + D HA L+F + F WN M+RA T L LY
Sbjct: 19 DPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKY 78
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ GF P+ +TF F+++AC + G +H AV+ G+ FVQ+ L+ LY C
Sbjct: 79 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 138
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D R++FD R VV+WT +I+G A SG + A
Sbjct: 139 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVA 173
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F ++ + +W+ MI G +AL L+N M GFRP+ +
Sbjct: 168 GQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGAL 227
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+++G+ +H + D + + L+D+Y KCG V+ ++FD+M R V
Sbjct: 228 TACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVF 287
Query: 147 SWTTMISGLAASG 159
++T++ISGLA G
Sbjct: 288 AFTSLISGLANHG 300
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D++L L+D+ + G + A VF ++ VF + +I L G S A+ ++ M
Sbjct: 254 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 313
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG 98
G P++ TF ++ AC +E+G
Sbjct: 314 NEGVCPNEVTFICLLSACSRVGLVEEG 340
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL++D + L+D+ + G A VF+ R V ++N++I + LQ+L
Sbjct: 341 VRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEV-SYNILIIGYSETDDCLQSL 399
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G +PD +F VI AC A+++GKEVHG+A++ +FV ++L+D Y
Sbjct: 400 NLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFY 459
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG +D ++F+++ + V SW TMI G G+L+ A
Sbjct: 460 TKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETA 499
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 60/95 (63%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ G + D TFPFV+K C S I KG EVHG+ K GF D++V +TL+ LY CG
Sbjct: 1 MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ R++FD+M R VVSW T+I L+ +GD A
Sbjct: 61 LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEA 95
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G D + L+D+ + G + A +F + ++ +WN MI ++ L+A+
Sbjct: 240 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAI 299
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M G P+ TF V+ AC + GKE+H + V+ G + D+FV ++L+D+Y
Sbjct: 300 RFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMY 359
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG + R +F+ R + VS+ +I G + + D
Sbjct: 360 AKCGCLHSARNVFNTSR-KDEVSYNILIIGYSETDD 394
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL + L+D G VF++ + +WN +I L G AL
Sbjct: 139 VKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDAL 198
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ +MI G +P+ T ++ + + GKE+HG +++ G D+F+ ++L+D+Y
Sbjct: 199 NAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMY 258
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
K G +F + R++VSW MI+ A
Sbjct: 259 AKSGHSTEASTIFHNLDRRNIVSWNAMIANYA 290
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G D + LL L G + A +F ++ V +WN +I L+++G +A
Sbjct: 36 VFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEA 95
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
Y MI +P+ + ++ A E + +H +VK G + + L+D
Sbjct: 96 RNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVD 155
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V ++F++ ++ VSW ++I+GLA G
Sbjct: 156 AYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKG 192
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 1/159 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R L + + LLD + G+ D A +F+QI V +WN MI + G A+
Sbjct: 441 LRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAI 500
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M + + D ++ V+ AC +E+G + + + ++DL
Sbjct: 501 SMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLL 560
Query: 125 LKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G V+ K+ ++ + + W ++ G+++
Sbjct: 561 GRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 599
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 18/180 (10%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KIIR D +V +LL +CS +A +FS + P+V+ + +I L +
Sbjct: 54 KIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTD 113
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ LY MI + PD + V+KAC LA+++G+EVH +K G S + ++ L++
Sbjct: 114 GIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIE 173
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS------------------WTTMISGLAASGDLDAA 164
LY KCG + R++FD+M R VV+ WT MI GL +G+ + A
Sbjct: 174 LYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRA 233
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 18/175 (10%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVF----------SQIRCPHVF------- 45
++++ GLS+++ + KL++L G + A VF S + + F
Sbjct: 155 QVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDT 214
Query: 46 -TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
W MI L +G S +AL ++ M P++ T V+ AC A++ G+ V
Sbjct: 215 VCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSY 274
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K + FV L+++Y +CGD+D +++F++M+ ++V+++ +MI G A G
Sbjct: 275 MDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHG 329
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G D A VF Q++ +V T+N MI + G S++A+ L+ +I GF P
Sbjct: 290 LINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPS 349
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC E G E+ H +A G + ++DL + G ++
Sbjct: 350 SVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFI 409
Query: 138 DKMRVR-SVVSWTTMISGLAASGDLDAA 164
M+V V ++S G+L+ A
Sbjct: 410 RMMKVAPDHVMLGALLSACKIHGNLELA 437
>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g01580
gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 89/156 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G SND LV LL+ + A+ +F I V +W+ +I +G++ +A
Sbjct: 189 VIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEA 248
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL++N M+ +G P+ T V++AC A+ +E+G++ H LA++ G ++ V + L+D+
Sbjct: 249 LLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDM 308
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KC + +F ++ + VVSW +ISG +G
Sbjct: 309 YMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNG 344
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
+ C + + A +F ++ ++ WN ++++L+ + + L ++ M + +PD
Sbjct: 1 MGFCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDN 60
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT P +KAC + G+ +HG K D++V S+L+ +Y+KCG + +MFD
Sbjct: 61 FTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFD 120
Query: 139 KMRVRSVVSWTTMISGLAASG 159
++ +V+W++M+SG +G
Sbjct: 121 ELEKPDIVTWSSMVSGFEKNG 141
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL + + L+D+ + A VFS+I V +W +I T++G + +++
Sbjct: 291 IRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSI 350
Query: 65 LLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+++M+ N RPD V+ +C +E+ K H +K GF + F+ ++L++L
Sbjct: 351 EEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVEL 410
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG + K+F+ + ++ V WT++I+G G
Sbjct: 411 YSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHG 446
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G+ AL +F ++ P + TW+ M+ +GS QA+ + M+ + PD+ T +
Sbjct: 110 GRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITL 169
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC G+ VHG ++ GFS D+ + ++L++ Y K +F + + V
Sbjct: 170 VSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDV 229
Query: 146 VSWTTMISGLAASG 159
+SW+T+I+ +G
Sbjct: 230 ISWSTVIACYVQNG 243
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+YG ++ + L++L S G +A VF+ I W +I I G +A
Sbjct: 392 VIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKA 451
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLM 121
L +N M+ + +P++ TF ++ AC + I +G + L V + ++ + L+
Sbjct: 452 LETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLV 511
Query: 122 DLYLKCGDVDGGRKMFDKM 140
DL + GD+D ++ +M
Sbjct: 512 DLLGRVGDLDTAIEITKRM 530
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ +GLS D L KL+ L +G + A L+F +IR P +++W +MIR ++ S +
Sbjct: 62 LVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEI 121
Query: 64 LLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ YN + D F V+KAC ++G+++H VK G S D FV + L+D
Sbjct: 122 VQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVD 180
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y KC +V+ R++FD++ R+VV WT+MI G
Sbjct: 181 MYAKCREVEDSRRVFDEILDRNVVCWTSMIVG 212
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S D L+D+ + A VF + V WN +I T +G + +AL L++
Sbjct: 370 SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQ 429
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCG 128
M + PD T V+ AC + A G +HG A+KAG S ++V + L++ Y KCG
Sbjct: 430 MRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCG 489
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
D + R +FD+M ++ ++W+ MI G GD
Sbjct: 490 DAESARVIFDEMGEKNTITWSAMIGGYGIQGD 521
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G S D ++ L+D+ + + + + VF +I +V W MI + +
Sbjct: 163 QIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKE 221
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+L+N M +++T ++ AC A+ +GK VHG +K+GF + F+ + L+D
Sbjct: 222 GLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLD 281
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCGD+ +FD++ +VSWT MI G A G
Sbjct: 282 LYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRG 318
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + LV LLDL G A VF ++ + +W MI G +A
Sbjct: 264 VIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREA 323
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ P+ T V+ AC + ++ G+ VH L +K G S D ++ L+D+
Sbjct: 324 LKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFENALVDM 382
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC + R +F+ + + V++W ++ISG +G
Sbjct: 383 YAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNG 418
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++H L V G S D+ ++ L+ LY G V+ R MFD++R + SW MI
Sbjct: 56 RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI 109
>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
Length = 1068
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L +L + +G+ HA VF+++ VF+WN+M+ G +AL LY M+ G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RPD +TFP V++ C G+EVH ++ GF ++ V + L+ +Y KCGD+ R
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD M + +SW MI+G + + +A
Sbjct: 253 KVFDGMAMTDCISWNAMIAGHFENHECEAG 282
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L Y K+ H A+ VF + V +W+ MI + S AL + M+ + +P+
Sbjct: 440 LLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPN 498
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + AC A+ A+ GKE+H ++ G + +V + L+DLY+KCG F
Sbjct: 499 SVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFS 558
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ VVSW M+SG A G D A
Sbjct: 559 VHSEKDVVSWNIMLSGFVAHGLGDIA 584
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L Y K+ H A+ VF + V +W+ MI + S AL + M+ + +P+
Sbjct: 639 LLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPN 697
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + AC A+ A+ GKE+H ++ G + +V + L+DLY+KCG F
Sbjct: 698 SVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFS 757
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ VVSW M+SG A G D A
Sbjct: 758 VHSEKDVVSWNIMLSGFVAHGLGDIA 783
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G ++ ++ L+ + + G A VF + +WN MI +
Sbjct: 223 VLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAG 282
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ N +P+ T V A + KE+HG AVK GF+ D+ ++L+ +
Sbjct: 283 LELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQM 342
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y G + K+F +M + +SWT MISG +G D A
Sbjct: 343 YTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKA 383
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + D L+ + + G+ A +FS++ +W MI +G +AL
Sbjct: 325 VKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKAL 384
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y LM + PD T + AC ++ G ++H LA GF R + V + L+++Y
Sbjct: 385 EVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMY 444
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K +D ++F M + VVSW++MI+G
Sbjct: 445 AKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ ++ + LLDL G+T +A FS V +WN+M+ G A
Sbjct: 525 VLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIA 584
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N M+ + + AC ++ G ++H LA GF R + V + L+++
Sbjct: 585 LSLFNQMMYTSL--GRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEM 642
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y K +D ++F M + VVSW++MI+G
Sbjct: 643 YAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 674
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ ++ + LLDL G+T +A FS V +WN+M+ G A
Sbjct: 724 VLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIA 783
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N M+ G PD+ TF + A + I+ + H K ++ + ++DL
Sbjct: 784 LSLFNQMVEMGEHPDEVTFVLMCACSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDL 843
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
+ G + + ++M ++ W +++G
Sbjct: 844 LSRVGKLTEAYNLINRMPIKPDAAVWGALLNG 875
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+RAL G QAL L + + PD+ + + + C A++ G A
Sbjct: 71 LRALCSHGQLAQALWL---LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHP 127
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
S + + + ++ + ++ G++ ++F KM R V SW M+ G G L+ A
Sbjct: 128 SFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEA 181
>gi|302793011|ref|XP_002978271.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
gi|300154292|gb|EFJ20928.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
Length = 680
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I GL +D + L+++ + +G A VFSQI V +WN ++ A + QA
Sbjct: 192 IRERGLESDVGVGTSLVNMYARWGDAQQAQEVFSQIEARDVSSWNCLLAAYSRCSRQEQA 251
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+LY M+ G +PD+ T VI C + +E+G +H +GF+ D+ + + L+
Sbjct: 252 LVLYREMMLEGVKPDRLTLNTVIDVCASLKDLEQGSRIHQQIASSGFASDLMLDTALITF 311
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG ++ ++F+ + R V+W TMI+ L +AA
Sbjct: 312 YGRCGKLEAALEIFEALPARDNVTWNTMIASLNDHSSPEAA 352
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
W +MI A G +ALLL+ + G RP + TF ++ AC ++++GK++H L
Sbjct: 30 WTVMISAYVRRGWINEALLLFKKSLLEGVRPSEGTFIALLHACSRPASLDQGKKLHRLLE 89
Query: 107 KAGFSRDMF--VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+AGF + + ++L+ +Y KCG +D K+ +K+ R V WT MI+ L+ G LD A
Sbjct: 90 EAGFQESIAPSLATSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRA 149
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+I G ++D +L L+ GK + AL +F + TWN MI +L S
Sbjct: 291 QQIASSGFASDLMLDTALITFYGRCGKLEAALEIFEALPARDNVTWNTMIASLNDHSSPE 350
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ + M G P + T V+ C + + + K VH ++GF +D V++TL+
Sbjct: 351 AAMGFFQRMQQEGMAPSRVTLLTVLGLCGS---VGEAKLVHSCVRESGFEQDSEVKNTLI 407
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG + ++F+ + + SW M+ AA G AA
Sbjct: 408 TAYGRCGGLPQALEIFEALPRKIESSWNAMMGAYAAQGKPRAA 450
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L YGK D A V +I V W +MI +L+ G +A L M G RP
Sbjct: 105 LIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPS 164
Query: 79 KFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
K TF V++AC A + G +HGL + G D+ V ++L+++Y + GD +++F
Sbjct: 165 KMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDAQQAQEVF 224
Query: 138 DKMRVRSVVSWTTMIS 153
++ R V SW +++
Sbjct: 225 SQIEARDVSSWNCLLA 240
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 6/155 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D + L+ G AL +F + +WN M+ A G AL L+
Sbjct: 395 GFEQDSEVKNTLITAYGRCGGLPQALEIFEALPRKIESSWNAMMGAYAAQGKPRAALELF 454
Query: 68 NLMIC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ M+ +P T + +C ++ GK V ++ D FVQ+ ++D+
Sbjct: 455 HRMVKLEQMIQPSVSTIILALNSC---RSLADGKLVISSIPESLVEEDGFVQAAMVDMLA 511
Query: 126 KCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159
+CG +D + F K+ + + V WTTM++ A G
Sbjct: 512 RCGSLDDASEFFHKLGKNKDTVLWTTMVAAFARHG 546
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 120 LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
L+ +Y++CG V+ RK+FD M V R+ WT MIS G ++ A
Sbjct: 1 LLGMYVRCGSVESARKLFDSMAVERNGECWTVMISAYVRRGWINEA 46
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQALLLY 67
+ D + ++D+ + G D A F ++ + W M+ A G S +AL L+
Sbjct: 496 VEEDGFVQAAMVDMLARCGSLDDASEFFHKLGKNKDTVLWTTMVAAFARHGHSARALGLF 555
Query: 68 NLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M+ +G PD+ T V+ AC + + + GL + A + D VQ ++LY
Sbjct: 556 EAMLLDGGGSPDEVTLVSVLSACSHAGLLHR-----GLQIFASTASDFGVQWRSLELY 608
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R LS + +++ +C+ +G+ HA VF+QI P++ N MI+A + A+
Sbjct: 34 VRLCLSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNLHLHNAMIKAYAQNHLHRDAV 93
Query: 65 LLYNLMI-------CNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+Y M+ GF D+FT+PF++KAC A A G++VH ++G V
Sbjct: 94 EVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVV 153
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Q++L+++Y +CGD+ RK FD MR + VVSW T+IS A G + A
Sbjct: 154 QNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRA 201
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F + V +W ++ T G A+ ++ LM GF PD + V+
Sbjct: 196 GQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVL 255
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E G+ ++ K G +++ + LM++Y KCG ++ ++F M + V+
Sbjct: 256 PACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVI 315
Query: 147 SWTTMISGLAASG 159
SW+T I GLAA G
Sbjct: 316 SWSTAIGGLAAHG 328
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G++ D L L+++ + G ++A VF +I V +W +I +G
Sbjct: 153 QVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSG 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G ++FT+ +KAC L +E GK+VH A+K G D+FV S L+D
Sbjct: 213 AVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVD 272
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
LY KCG++ ++F M ++ VSW +++G A GD +
Sbjct: 273 LYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAE 312
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 84/157 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ L + + L+D+ + + A +F+++ +F W +++ DG +
Sbjct: 557 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEK 616
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ + M G +P++FT + C ++ G+++H +A+KAG S DMFV S L+D
Sbjct: 617 AVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVD 676
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V+ +FD + R VSW T+I G + G
Sbjct: 677 MYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 713
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G D+ + L+D+ S G AL VF +I P V +W+ +I L G S +A
Sbjct: 357 IRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAA 416
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M +G P++FT ++ A + G+ +H K GF D V + L+ +Y
Sbjct: 417 EVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMY 476
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+K G V G ++F+ R ++SW ++SG
Sbjct: 477 MKIGSVQDGCRVFEATTNRDLISWNALLSGF 507
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ +YG D + L+ + G VF + +WN ++ + +
Sbjct: 457 VCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTG 516
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++N M+ GF P+ +TF ++++C + ++ GK+VH VK + FV + L+D+
Sbjct: 517 LRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDM 576
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K ++ +F+++ R + +WT +++G A G + A
Sbjct: 577 YAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKA 617
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G +D + L+DL + G+ A VF + + +WN ++ G + +
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK 313
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M + KFT V+K C S + G+ VH LA++ G D F+ L+D
Sbjct: 314 VLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVD 373
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG K+F ++ VVSW+ +I+ L G
Sbjct: 374 MYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKG 410
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ C + + +GK +HG +K+G + D + ++L+++Y KCG + K+F ++ R
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193
Query: 145 VVSWTTMISGLAASG 159
VVSWT +I+G A G
Sbjct: 194 VVSWTALITGFVAEG 208
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G S D + L+D+ + G + A +VF + +WN +I + G +AL
Sbjct: 660 IKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKAL 719
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDL 123
+ M+ G PD+ TF V+ AC IE+GK+ + L+ G + + + ++D+
Sbjct: 720 KAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDI 779
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ G ++M++ S V+ W T++ G+++
Sbjct: 780 LGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 819
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S D + L+D+ S G A VFS + ++ TWN +I +G + +AL ++
Sbjct: 179 STDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVR 238
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCG 128
M+ +G PD+ T V+ AC + A+++G ++H VK F D+ + + L+D+Y KC
Sbjct: 239 MMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCS 298
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V+ R++FD+M +R+VVS T+M+SG A + + AA
Sbjct: 299 KVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAA 334
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A +FS++ +V +WN +I T +G + +AL L+ L+ P +TF ++ AC
Sbjct: 334 ARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACAN 393
Query: 92 SLAIEKGKEVHGLAVKAGFS------RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ G++ H +K GF D+FV ++L+D+Y+KCG ++ G ++F+KM+ R
Sbjct: 394 LADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDC 453
Query: 146 VSWTTMISGLAASG 159
VSW +I G A +G
Sbjct: 454 VSWNAIIVGYAQNG 467
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+ + + G D A +F + P +WN M+ ++L + M F +
Sbjct: 87 LISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLN 146
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+++F + AC + + G +VH L K+ +S D+++ S L+D+Y KCG V ++F
Sbjct: 147 EYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS 206
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R++V+W ++I+ +G A
Sbjct: 207 GMIERNLVTWNSLITCYEQNGPASEA 232
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
+ P+ F ++ +C+ S + + VH + FS ++F+Q+ L+D+Y KC +D R
Sbjct: 11 YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+FD+M R+ +W ++IS L SG LD A
Sbjct: 71 KLFDRMPQRNTFTWNSLISVLTKSGFLDEA 100
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D + L+D+ G + VF +++ +WN +I +G +AL ++
Sbjct: 417 GAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIF 476
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK------EVHGLAVKAGFSRDMFVQSTLM 121
M+ G +PD T V+ AC + +E+G+ E HGL +D + + ++
Sbjct: 477 RKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPL----KDHY--TCMV 530
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
DL + G ++ + + + M V V W ++++ G+++
Sbjct: 531 DLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIE 572
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 84/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL D + L+D+ + + + VF+ + +WN +I +G + L
Sbjct: 266 IRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 325
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M+ +P ++F ++ AC + GK++HG + GF ++F+ S+L+D+Y
Sbjct: 326 RFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMY 385
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++ +++FD+MR+R +VSWT MI G A G
Sbjct: 386 AKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHG 420
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F + + +WN +I +G + L + M +PD FT V+ ++
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
I +GKE+HG +++ G D++V S+L+D+Y KC V ++F + R +SW ++I+G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314
Query: 155 LAASGDLD 162
+G D
Sbjct: 315 CVQNGLFD 322
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 32/160 (20%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+L +F+ I P W +IR T G Q+L + M+ +G PD FP V+K+C
Sbjct: 59 SLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCAL 118
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK-------------CGDV-------- 130
+ + G+ +HG ++ G D++ + LM++Y K G+V
Sbjct: 119 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERT 178
Query: 131 -----------DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D RK+F+ M + +VSW T+I+G A +G
Sbjct: 179 RSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNG 218
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 9/163 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R G + + L+D+ + G A +F ++R + +W MI + G + A
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G + V+ AC L E K + + G + + + + D
Sbjct: 426 IELFEQMETEGIKA-------VLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSD 478
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G ++ M + S W T++S ++D A
Sbjct: 479 LLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMA 521
>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
Length = 653
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I G D + L+ + + G + A F I + WN M+ A
Sbjct: 204 RITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKD 263
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M+ GF PD+FTF V+ +C + A+ +GK +H + GF +D+ + + L++
Sbjct: 264 ALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVN 323
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + +K FD + + VVSW+ MI+ A G + A
Sbjct: 324 MYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEA 365
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI A T+ G A L++ M G PD +TF ++ AC + +E G+ +H
Sbjct: 144 VVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHV 203
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
GF RD +Q+ L+ +Y +CG ++ R+ F + + + +W TM++ A
Sbjct: 204 RITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYA 256
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF +I+ + F+W++++ + +AL +Y M+ D +T V+ AC
Sbjct: 1 ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTT 150
L +E+G+ V A + GF +D+ V ++L+ L+ KCG ++ +F M +R ++S T
Sbjct: 61 LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120
Query: 151 MISGLAAS 158
MI S
Sbjct: 121 MIGAYCGS 128
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 79/134 (58%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL+ C G AL +F +I P + TW ++I T G +A+ +Y+ ++ RP
Sbjct: 16 KLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRP 75
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
DKF V KAC AS + K++H A++ GF++D+ + + L+D++ KC V+G R +F
Sbjct: 76 DKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVF 135
Query: 138 DKMRVRSVVSWTTM 151
D M V+ VVSWT+M
Sbjct: 136 DDMVVKDVVSWTSM 149
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 30 DHALLVFSQIRCPHV----FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+ L +F Q+R + +WN I +G AL + M +G +P++ T
Sbjct: 259 ERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSA 318
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ C ++ GKE+HG + F D+ + + L+ LY KCGD++ R +F+ M + V
Sbjct: 319 LPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDV 378
Query: 146 VSWTTMISGLAASG 159
V+W TMI + G
Sbjct: 379 VAWNTMIMANSMHG 392
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 5 IRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I++G + D +L L+D+ C F + A VF + V +W M G
Sbjct: 104 IQFGFNKDLVLGNALIDMFGKCKF---VNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCR 160
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
Q +LL+ M NG R + T ++ AC + I+ G+EVHG ++ +++V S L+
Sbjct: 161 QGILLFREMGLNGIRANSLTVSSILPAC--ADYIKLGREVHGFILRNEMEGNVYVSSALV 218
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++Y + R +FD M R +VSW M++
Sbjct: 219 NMYASSLGLKQARLVFDSMYHRDIVSWNVMLTA 251
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R+ D + L+ L + G + + VF+ + V WN MI A ++ G ++
Sbjct: 338 VFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGES 397
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L+L+N M+ +G P+ TF V+ C S ++G V + ++ + + D S ++D
Sbjct: 398 LILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVD 457
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
+ + G ++ KM +
Sbjct: 458 VLSRAGRLEEAYDFIRKMPIE 478
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 30 DHALLVFSQIR------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
D AL V +Q+ P+V +W+ +I G + +AL L+ M P+ T
Sbjct: 568 DKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMA 627
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
V+ AC+ LA+ G+E+HG A+KA R V++ L+++Y KCG V G RK+FD M+ R
Sbjct: 628 TVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTR 687
Query: 144 SVVSWTTMISGLAASGDLDAA 164
++SW +M++G G D A
Sbjct: 688 DLISWNSMLAGYGMHGLCDEA 708
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGK 99
P TW ++ A G L L+ M +G + + + AC LA+ KGK
Sbjct: 445 PDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGK 504
Query: 100 EVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+HG V G +FV ++L+ +Y K G++D +K F ++ V+W T+I+ AA+
Sbjct: 505 AIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAA 564
Query: 159 GDLDAA 164
D A
Sbjct: 565 RLCDKA 570
Score = 42.7 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L L+ L+++ + GK A VF ++ + +WN M+ + G +AL L+
Sbjct: 654 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 713
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKC 127
M PD TF V+ AC + + +G+ + V+A S M + ++ L +
Sbjct: 714 DMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRA 773
Query: 128 GDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGD 160
G + ++ + M VR + W +++ GD
Sbjct: 774 GLLRDASELVETMPVRPDLCVWGALLNSCRIHGD 807
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN ++RA AL LY M + P+ +T P ++A + VH A
Sbjct: 315 WNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPLALRAAASPRV---ASAVHAHA 371
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
+ G V ++ Y + G R++FD M R+ W +IS ++ D DAA
Sbjct: 372 LHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAA 431
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 85/160 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL D + L+D+ + + + VF+ + +WN +I +G + L
Sbjct: 266 IRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 325
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M+ +P ++F ++ AC + GK++HG + GF ++F+ S+L+D+Y
Sbjct: 326 RFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMY 385
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG++ +++FD+MR+R +VSWT MI G A G A
Sbjct: 386 AKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F + + +WN +I +G + L + M +PD FT V+ ++
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
I +GKE+HG +++ G D++V S+L+D+Y KC V ++F + R +SW ++I+G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314
Query: 155 LAASGDLD 162
+G D
Sbjct: 315 CVQNGLFD 322
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 32/160 (20%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
+L +F+ I P W +IR T G Q+L + M+ +G PD FP V+K+C
Sbjct: 59 SLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCAL 118
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK-------------CGDV-------- 130
+ + G+ +HG ++ G D++ + LM++Y K G+V
Sbjct: 119 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERT 178
Query: 131 -----------DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D RK+F+ M + +VSW T+I+G A +G
Sbjct: 179 RSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNG 218
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R G + + L+D+ + G A +F ++R + +W MI + G + A
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G +P+ F V+ AC L E K + + G + + + + D
Sbjct: 426 IELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSD 485
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G ++ M + S W T++S ++D A
Sbjct: 486 LLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMA 528
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++YG + + L+D+ + G D A L F + +WN +I G AL
Sbjct: 216 LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHAL 275
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M F+P FT+ V+ AC + A+E+GK VH +K+G F+ +TL+D+Y
Sbjct: 276 HLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMY 335
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G +D +++FD++ VVSW TM++G A G
Sbjct: 336 AKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L N +L ++++ + G D A +F ++ + TW +I + + ALLL+
Sbjct: 119 LDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFP 178
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ GF+P+ FT ++KA + ++ G ++H +K G+ ++V S L+D+Y +CG
Sbjct: 179 QMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG 238
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D + FD M +S VSW +ISG A G+ + A
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHA 274
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL + LLD+ + G D A VF ++ P V +WN M+ G +
Sbjct: 316 MIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKET 375
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M+ G P++ +F V+ AC S +++G L K D+ T +DL
Sbjct: 376 LDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDL 435
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ G +D + +M + + W ++
Sbjct: 436 LGRVGLLDRAERFIREMPIEPTAAVWGALL 465
>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ +GLS D L KL+ L +G + A L+F +IR P +++W +MIR ++ S +
Sbjct: 109 LVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEI 168
Query: 64 LLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ YN + D F V+KAC ++G+++H VK G S D FV + L+D
Sbjct: 169 VQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVD 227
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y KC +V+ R++FD++ R+VV WT+MI G
Sbjct: 228 MYAKCREVEDSRRVFDEILDRNVVCWTSMIVG 259
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G S D ++ L+D+ + + + + VF +I +V W MI + +
Sbjct: 210 QIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKE 268
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+L+N M +++T ++ AC A+ +GK VHG +K+GF + F+ + L+D
Sbjct: 269 GLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLD 328
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY KCGD+ +FD++ +VSWT MI G A G
Sbjct: 329 LYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRG 365
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + LV LLDL G A VF ++ + +W MI G +A
Sbjct: 311 VIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREA 370
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ P+ T V+ AC + ++ G+ VH L +K G S D ++ L+D+
Sbjct: 371 LKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFENALVDM 429
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC + R +F+ + + V++W ++ISG +G
Sbjct: 430 YAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNG 465
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S D L+D+ + A VF + V WN +I T +G + +AL L++
Sbjct: 417 SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQ 476
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKC 127
M + PD T V+ AC + A G +HG A+KAG RD S ++L+
Sbjct: 477 MRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGRDC---SRSLELF--- 530
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + +K+ V+ +TT++S + SG
Sbjct: 531 -----GDMLKEKLEPNEVI-FTTILSACSHSG 556
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++H L V G S D+ ++ L+ LY G V+ R MFD++R + SW MI
Sbjct: 103 RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI 156
>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 621
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A ++F ++ V +W MI A G +AL ++ MI GF P++FT ++
Sbjct: 235 GDVDGASMMFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPAMISEGFHPNEFTVCSIL 294
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A+ GK++HG VK F D+ V S L+ +Y + +V + +FD M R+ +
Sbjct: 295 KACAEEKALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTI 354
Query: 147 SWTTMISGLAASGDLDAA 164
+WT++ISG A SG + A
Sbjct: 355 TWTSLISGYAQSGHAERA 372
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 75/138 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ +A + ++ W MI G S +AL + M+ +G P+ +T+ +
Sbjct: 437 GEYTYAARILEEMPDRDAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSAL 496
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ G+ +HG+ K ++FV S+L+D+Y++CG VD R++F + ++V
Sbjct: 497 KACAKLEALQDGRRIHGVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEHNLV 556
Query: 147 SWTTMISGLAASGDLDAA 164
+W +I+G A +G + A
Sbjct: 557 TWKVIITGFAQNGLCEEA 574
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
L L+ + + + A VF ++ V +W M+ G+ + + L+ MI +
Sbjct: 122 FLANNLITSYARFHEIPDARKVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLFLDMIAS 181
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G R + +F ++K+C + G++VH VK G+S ++ + S + Y +CGDVDG
Sbjct: 182 GERGNSLSFVCLLKSCGEQCDGKLGQQVHCCVVKGGWS-NVIMDSAVAHFYAQCGDVDGA 240
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
MFDKM R V+SWTTMI+ G D A
Sbjct: 241 SMMFDKMTSRDVISWTTMITAYVQHGRGDKA 271
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLD--------LCSFYGKTDH---ALLVFSQIRCPHVFTWNLM 50
+K +R G LV+KL L + Y + A VF + + TW +
Sbjct: 300 EKALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTITWTSL 359
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G + +A++L+ M + T ++ AC + ++ GKE+H +K
Sbjct: 360 ISGYAQSGHAERAIMLFRQMKTRRVSVNNLTIVGLLSACGSLRSLCLGKELHAQVIKNSI 419
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ + STL+ Y KCG+ ++ ++M R V+WT MISG + G
Sbjct: 420 QENLQIGSTLVWCYCKCGEYTYAARILEEMPDRDAVAWTAMISGYNSVG 468
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD T +++C A + + VHG+AV++ +F+ + L+ Y + ++ RK+
Sbjct: 87 PDAETLASWLRSCGAVADV---RGVHGVAVRSPDGPGIFLANNLITSYARFHEIPDARKV 143
Query: 137 FDKMRVRSVVSWTTMISGLAASGD 160
FD+M R+VVSWT M++G SG+
Sbjct: 144 FDEMPERTVVSWTAMMNGYQKSGN 167
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ GK D A VFS + ++ TW ++I +G +A LM G+ D
Sbjct: 530 LIDMYMRCGKVDEARRVFSALPEHNLVTWKVIITGFAQNGLCEEAFKYMYLMQQQGYDAD 589
Query: 79 KFTFPFVIKAC 89
F V+ +C
Sbjct: 590 DFMLSKVLTSC 600
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL + KL+ L YG D A VF I ++ M++ +A
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M + P + F +++K C + GKE+HGL VK+GFS D+F + L ++
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC V+ RK+FD+M R +VSW T+++G + +G
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNG 215
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL + +V L+ + + D A +F +++ + +WN MI +G + AL
Sbjct: 364 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 423
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAI-EKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M +PD FT+ VI A IA L+I K +HG+ +++ +++FV + L+D+
Sbjct: 424 NYFSQMRSRTVKPDTFTYVSVITA-IAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R +FD M R V +W MI G G
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHG 518
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 80/141 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A +F + +V +WN MI A + + +A+L++ M+ G +P
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPT 336
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + AC +E+G+ +H L+V+ G R++ V ++L+ +Y KC +VD MF
Sbjct: 337 DVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFG 396
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K++ R++VSW MI G A +G
Sbjct: 397 KLQSRTLVSWNAMILGFAQNG 417
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G S D + L ++ + + + A VF ++ + +WN ++ + +G + A
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M +P T V+ A A I GKE+HG A+++GF + + + L+D+
Sbjct: 221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDM 280
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ R++FD M R+VVSW +MI + + A
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R L + + L+D+ + G A L+F + HV TWN MI G A
Sbjct: 464 VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAA 523
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ M +P+ TF VI AC S +E G
Sbjct: 524 LELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
++++ +++ L K G ++ F Q+ L+ L+ + G VD ++F+ + + V + TM+
Sbjct: 49 SLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLK 108
Query: 154 GLAASGDLDAA 164
G A DLD A
Sbjct: 109 GFAKVSDLDKA 119
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL-MICNGFR 76
KL++L + G A F I V+ WNLMI G S + + ++L M+ +G +
Sbjct: 91 KLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQ 150
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD TFP V+KAC + G ++H LA+K GF D++V ++L+ LY + G V R +
Sbjct: 151 PDYRTFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARIL 207
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FD+M R + SW MISG SG+ A
Sbjct: 208 FDEMPTRDMGSWNAMISGYCQSGNAKEA 235
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++GL ++ + KL+DL + +G VF ++ + +WN +I+A ++ L+A+
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
LL+ M + +PD T + + ++ L I + V G ++ G F D+ + + ++
Sbjct: 334 LLFQEMRLSRIQPDCLTL-ISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVV 392
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G VD R +F+ + + V+SW T+ISG A +G
Sbjct: 393 MYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNG 429
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+++G D + L+ L YG +A ++F ++ + +WN MI G++ +AL
Sbjct: 177 LKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL 236
Query: 65 LLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +G R D T ++ AC + +G +H ++K G ++FV + L+DL
Sbjct: 237 TL-----SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
Y + G + +K+FD+M VR ++SW ++I
Sbjct: 292 YAEFGSLKDCQKVFDRMYVRDLISWNSII 320
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG--FRPDKFTFPF 84
G D A VF+ + V +WN +I +G + +A+ +YN+M G ++ T+
Sbjct: 398 GLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVS 457
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V+ AC + A+ +G ++HG +K G D+FV ++L D+Y KCG +D +F ++ +
Sbjct: 458 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVN 517
Query: 145 VVSWTTMIS--GLAASGD 160
V W T+I+ G G+
Sbjct: 518 SVPWNTLIACHGFHGHGE 535
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ GL D + L D+ G+ D AL +F QI + WN +I G +
Sbjct: 477 RLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEK 536
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
A++L+ M+ G +PD TF ++ AC S +++G+ + G + + ++
Sbjct: 537 AVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMV 596
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
DLY + G ++ M ++ S W ++S G++D
Sbjct: 597 DLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVD 638
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ K +H V + +++ + + L++LY G+V R FD + R V +W MISG
Sbjct: 67 LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126
Query: 155 LAASG 159
+G
Sbjct: 127 YGRAG 131
>gi|302755014|ref|XP_002960931.1| hypothetical protein SELMODRAFT_74762 [Selaginella moellendorffii]
gi|300171870|gb|EFJ38470.1| hypothetical protein SELMODRAFT_74762 [Selaginella moellendorffii]
Length = 643
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G++ D L+ LL L + +TD A VFS+I V W +I AL DG S A
Sbjct: 353 LLSSGVTLDDQLLTALLGLYAKCSRTDDARRVFSEIWEKGVVPWTALISALAADGRSSDA 412
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M G RP+++TF I+A + L I G+ +H A AG D FV +T+M +
Sbjct: 413 VAALRRMELEGVRPNEYTFVAAIEAA-SQLGIAHGRSLHARATSAGLDSDPFVANTVMAM 471
Query: 124 YLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159
Y CG + R +FD M R++VSW MI LA G
Sbjct: 472 YASCGSIAEARAVFDGMGHRRNLVSWNCMIEALARHG 508
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS-LQALL 65
+GLS D+ L L D+ G+ D + +F I +VF+W ++I A + +AL
Sbjct: 40 HGLSQDRFLANCLADMYGKCGRPDESRKIFDAIADKNVFSWTILIAAFSESADRRWEALH 99
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L M +G P+ TF V+ AC ++ +H G ++ V + L++ Y
Sbjct: 100 LLRFMDQSGVAPNAATFVSVLVACSELRCLDAVIALHARIASLGLDLEIVVGTALVNAYG 159
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG VD R F KM ++ + WT +I+ A +G A
Sbjct: 160 KCGSVDRARNAFAKMPRKNSICWTAVITANAQNGRFGPA 198
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + ++ LL++ G+ D A +F + + WN+MI + G+ +AL +
Sbjct: 254 GHGSSPIVAAALLNMYGKLGELDRAREIFHSLPERNAVMWNVMIAVSSQAGAIHEALGFF 313
Query: 68 NLMICNGF-RPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
M +G RPD TF +I AC A + + +HG + +G + D + + L+ LY
Sbjct: 314 WAMNLDGAARPDGSTFTSIISACAAGGVPPDLAVRIHGALLSSGVTLDDQLLTALLGLYA 373
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC D R++F ++ + VV WT +IS LAA G
Sbjct: 374 KCSRTDDARRVFSEIWEKGVVPWTALISALAADG 407
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
T+ V++ C A+E+G+ +H K G S+D F+ + L D+Y KCG D RK+FD
Sbjct: 12 TYAAVLRRCADDRALEQGQRIHDHIRKFHGLSQDRFLANCLADMYGKCGRPDESRKIFDA 71
Query: 140 MRVRSVVSWTTMISGLAASGD 160
+ ++V SWT +I+ + S D
Sbjct: 72 IADKNVFSWTILIAAFSESAD 92
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I GL + ++ L++ G D A F+++ + W +I A +G
Sbjct: 138 RIASLGLDLEIVVGTALVNAYGKCGSVDRARNAFAKMPRKNSICWTAVITANAQNGRFGP 197
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS----------LAIEKGKEVHGLAVKAGFSR 112
A+ LY M+ G +PD+ TF + AC +S +A ++ + +G
Sbjct: 198 AMELYERMVLEGLKPDRVTFVSALDACASSPRSPPPRYRAVAAQRIASLAAAVAASGHGS 257
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V + L+++Y K G++D R++F + R+ V W MI+ + +G + A
Sbjct: 258 SPIVAAALLNMYGKLGELDRAREIFHSLPERNAVMWNVMIAVSSQAGAIHEA 309
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQALLL 66
GL +D + ++ + + G A VF + ++ +WN MI AL G SL++L L
Sbjct: 457 GLDSDPFVANTVMAMYASCGSIAEARAVFDGMGHRRNLVSWNCMIEALARHGHSLESLEL 516
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS------TL 120
Y+ M +G P TF V+ AC +E G F RD +Q+ +
Sbjct: 517 YSEMELDGVPPSAATFVSVLAACSHVGEVELGYHYF-----VAFRRDYGIQAEAEHIGCV 571
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSV-VSWTTMISGLAASGD 160
+DL + G +D + + SW ++ GD
Sbjct: 572 VDLLGRAGWLDSAESFIQSLPAADLSSSWAVLLGACKTHGD 612
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 30 DHALLVFSQIR------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
D AL V +Q+ P+V +W+ +I G + +AL L+ M P+ T
Sbjct: 231 DKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMA 290
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
V+ AC+ LA+ G+E+HG A+KA R V++ L+++Y KCG V G RK+FD M+ R
Sbjct: 291 TVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTR 350
Query: 144 SVVSWTTMISGLAASGDLDAA 164
++SW +M++G G D A
Sbjct: 351 DLISWNSMLAGYGMHGLCDEA 371
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGK 99
P TW ++ A G L L+ M +G + + + AC LA+ KGK
Sbjct: 108 PDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGK 167
Query: 100 EVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+HG V G +FV ++L+ +Y K G++D +K F ++ V+W T+I+ AA+
Sbjct: 168 AIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAA 227
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L L+ L+++ + GK A VF ++ + +WN M+ + G +AL L+
Sbjct: 317 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 376
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKC 127
M PD TF V+ AC + + +G+ + V+A S M + ++ L +
Sbjct: 377 DMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRA 436
Query: 128 GDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGD 160
G + ++ + M VR + W +++ GD
Sbjct: 437 GLLRDASELVETMPVRPDLCVWGALLNSCRIHGD 470
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P+ +T P ++A + VH A+ G V ++ Y + G R++
Sbjct: 9 PNSYTLPLALRAAASP---RVASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRV 65
Query: 137 FDKMRV-RSVVSWTTMISGLAASGDLDAA 164
FD M R+ W +IS ++ D DAA
Sbjct: 66 FDAMPPGRTTFHWNALISAYSSGCDPDAA 94
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 81/134 (60%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D A+ +F +++ ++ +WN +I LT +GS L AL + LM G +PD+ TF +
Sbjct: 402 GQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGL 461
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+C A++ GK++H L +K+G++ D+FV + L+ +Y KCG + +F + VV
Sbjct: 462 SSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVV 521
Query: 147 SWTTMISGLAASGD 160
SW ++I+ A +G+
Sbjct: 522 SWNSLIAAYALNGN 535
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 22 LCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
LC F +GK A +F Q+ +V WN MI A + +A+ L+ M P+K
Sbjct: 240 LCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM------PEK 293
Query: 80 --FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++ VI + +++ +++ + R++ Q+ ++ Y++ +D R++F
Sbjct: 294 NSISWTTVINGYVRMGKLDEARQL----LNQMPYRNVAAQTAMISGYVQNKRMDDARQIF 349
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+++ +R VV W TMI+G + G +D A
Sbjct: 350 NQISIRDVVCWNTMIAGYSQCGRMDEA 376
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ + A +F ++ +++W LMI T +G +A L+NL+ P K+ P
Sbjct: 92 RVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLL------PYKWN-PVCCN 144
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
A +A A + + A ++D+ ++++ Y + G++ G + F++M R VVS
Sbjct: 145 AMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVS 204
Query: 148 WTTMISGLAASGDLDAA 164
W M+ G GDL+++
Sbjct: 205 WNLMVDGFVEVGDLNSS 221
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q +++ G + D + L+ + + G A L+F I V +WN +I A ++G+
Sbjct: 478 QLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGR 537
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--ST 119
+AL L++ M G PD+ TF ++ AC I++G ++ V+A ++ + + +
Sbjct: 538 EALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQA-YNIEPLAEHYAC 596
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
++DL + G ++ ++ M++ + W ++ G+L+ A
Sbjct: 597 MVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 642
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 40/137 (29%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ D A +F+QI V WN MI + G +AL L+ M+
Sbjct: 341 RMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV---------------- 384
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
+D+ +T++ Y + G +D K+F++M+ +++VS
Sbjct: 385 -----------------------KKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVS 421
Query: 148 WTTMISGLAASGD-LDA 163
W ++ISGL +G LDA
Sbjct: 422 WNSLISGLTQNGSYLDA 438
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV- 101
+VF NL I L G +A+ ++ M + T +I A + I +++
Sbjct: 14 YVFRHNLKITQLGKSGQIDEAIKVFQHMT----HKNTVTHNSMISAFAKNGRISDARQLF 69
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
G+ R++ ++++ YL V+ R++FDKM R + SWT MI+ +G+L
Sbjct: 70 DGMP-----QRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGEL 124
Query: 162 DAA 164
A
Sbjct: 125 AKA 127
>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
Length = 745
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I G D + L+ + + G + A F I + WN M+ A
Sbjct: 296 RITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKD 355
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY M+ GF PD+FTF V+ +C + A+ +GK +H + GF +D+ + + L++
Sbjct: 356 ALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVN 415
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + +K FD + + VVSW+ MI+ A G + A
Sbjct: 416 MYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEA 457
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V +WN MI A T+ G A L++ M G PD +TF ++ AC + +E G+ +H
Sbjct: 236 VVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHV 295
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
GF RD +Q+ L+ ++ +CG ++ R+ F + + + +W TM++ A
Sbjct: 296 RITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYA 348
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 26 YGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
YGK + A VF +I+ + F+W++++ + +AL +Y M+ D +T
Sbjct: 12 YGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTL 71
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-R 141
V+ AC L +E+G+ V A + GF +D+ V ++L+ L+ KCG ++ +F M
Sbjct: 72 SSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGA 131
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+R ++S T MI G D A
Sbjct: 132 MRDIISVTAMIGAYVRHGKNDLA 154
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSS 60
+K G D ++ L+ L + G + A VF + + + MI A G +
Sbjct: 92 RKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKN 151
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL Y M G PD FT+ ++ AC + + GK +H +++ ++ V++ L
Sbjct: 152 DLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNAL 211
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
+ +Y KCG + + +F M V+ VVSW MI+ G D DA
Sbjct: 212 ITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDA 255
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ D + L+ + S GK D A +F +I WN MI L+++ +AL
Sbjct: 445 KAAFHEDIYVASGLIGMYSKCGKMDIADCIFKKISKQDTVCWNSMIAGLSLNSLDNEALA 504
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ M +G P +F++ ++ C ++ GK++H K GF D++V S L+D+Y
Sbjct: 505 FFQQMRQSGMSPTQFSYATILSCCAKLSSLIHGKQIHAQIAKEGFVNDVYVGSALVDMYC 564
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG+V R+ FD M ++ V+W MI G A +G
Sbjct: 565 KCGEVGEARQFFDIMSSKNTVTWNEMIHGYAQNG 598
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q++ G D++ +L C G + +F + CP V +WN M+ +
Sbjct: 339 LQRMQSCGFEPDEVTYINMLTACVRSGDIEIGRQIFDCMACPGVSSWNGMLSGYFQIENH 398
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+ L+ M +PD+ T ++ +C +E GK+VH ++ KA F D++V S L
Sbjct: 399 NEAIKLFREMQFQNVKPDRTTLAIILSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGL 458
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+ +Y KCG +D +F K+ + V W +MI+GL+
Sbjct: 459 IGMYSKCGKMDIADCIFKKISKQDTVCWNSMIAGLS 494
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 74/132 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G +A +FS++ ++ +WN +I AL QAL +YN MI G P FT ++
Sbjct: 86 GNLQNAHRLFSEMPERNIVSWNNLISALVRGRLEQQALDVYNEMIWEGLMPTHFTLASIL 145
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC L +E G++ H L VK G +++V + L+ +Y KCG V ++F++M+ + V
Sbjct: 146 SACGTLLNMESGRKCHTLIVKIGLDNNVYVSNALLSVYSKCGLVRDAVRLFEEMQEPNEV 205
Query: 147 SWTTMISGLAAS 158
++T M+SG +
Sbjct: 206 TYTAMMSGFTQT 217
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL N+ + LL + S G A+ +F +++ P+ T+ M+ T ++A
Sbjct: 164 IVKIGLDNNVYVSNALLSVYSKCGLVRDAVRLFEEMQEPNEVTYTAMMSGFTQTDRVVEA 223
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-----------ASLAIEKGKEVHGLAVKAGFSR 112
L ++ LM G D + V+ C SL GK HGLA+K GF
Sbjct: 224 LEMFRLMCRQGICIDSVSLSSVLGVCTKGGCGESDQSDGSLRNALGKLAHGLAIKLGFES 283
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D+ + ++L+D+Y K GD+D ++F + SVVSW MI+G
Sbjct: 284 DLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSVVSWNVMIAG 325
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 35/150 (23%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D L LLD+ + G D A VF+ + V +WN+MI S +A+
Sbjct: 277 IKLGFESDLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSVVSWNVMIAGYGQKCKSGKAI 336
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M GF PD+ T+ ++ AC+ S
Sbjct: 337 EYLQRMQSCGFEPDEVTYINMLTACVRS-------------------------------- 364
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
GD++ GR++FD M V SW M+SG
Sbjct: 365 ---GDIEIGRQIFDCMACPGVSSWNGMLSG 391
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++++CI A GK +H + G S D F+ + L++ Y KC ++ +F +M ++
Sbjct: 12 LLQSCIDKKAHLSGKLLHARIFRIGLSTDTFLLNRLIEFYFKCKNMGYAHNLFHQMPHKN 71
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ SW +++ +G+L A
Sbjct: 72 IYSWNAILTEYCKAGNLQNA 91
>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 86/160 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I +GL D L L++L + G+ D A LVF + + +WN MI T G +QAL
Sbjct: 84 IHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQAL 143
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G +FT I AC A AI + K++H +A+K + FV + ++D+Y
Sbjct: 144 KLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVY 203
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC + +F+KM R++V+W+++ +G +G + A
Sbjct: 204 AKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEA 243
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ L ++ + +LD+ + A VF ++ + TW+ + +G +AL
Sbjct: 185 LKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEAL 244
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIE-KGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ G +FT ++ AC ASLA++ +G ++H + +K GF + FV ++L+D+
Sbjct: 245 HLFRCAQREGVELTEFTLSAILSAC-ASLALKIEGIQLHAVILKCGFHGNFFVAASLVDV 303
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y +CG ++ +F M ++VV W MI+ +
Sbjct: 304 YARCGQIEKAYALFAYMEHKNVVIWNAMIASFS 336
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
GK HGLA+ G D + L++LY KCG D R +FD M VRS+VSW TMI+G
Sbjct: 76 GKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTH 135
Query: 158 SGD 160
SG+
Sbjct: 136 SGE 138
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + + L+D+ + G+ + A +F+ + +V WN MI + + S +A
Sbjct: 285 ILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEA 344
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
++L+ M G P++ T+ V+ C + +EKG+ L + ++ S ++D
Sbjct: 345 MILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVD 404
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ + G D ++ +KM S W +++
Sbjct: 405 VLGRSGKTDEAWELLNKMPFEPTASMWGSLL 435
>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
Length = 559
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L KL+ + +G A +F + V +W M+ +G +AL L+ LM
Sbjct: 46 DLHLSTKLIIFYARFGDVAAARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMR 105
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G RP++FT+ AC + G++VH A K F+ DMFVQS LMD++L+CG V+
Sbjct: 106 ASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVE 165
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG-DLDA 163
R++F +M + VVSW +I G G D DA
Sbjct: 166 DARQLFAEMGKKDVVSWNALIRGFVERGHDGDA 198
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G +P + +++ CI+S A +GK VHG +A + D+ + + L+ Y + GDV
Sbjct: 6 GAKPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAA 65
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
RKMFD M RSVVSWT M+SG A +G
Sbjct: 66 ARKMFDGMPHRSVVSWTAMVSGYARNG 92
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ D + L+D+ G + A +F+++ V +WN +IR G AL L++
Sbjct: 144 FAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFS 203
Query: 69 LMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ PD +T +KAC I +A+ + +H +K G+ + V +L++ Y KC
Sbjct: 204 SMLKEAMIPDHYTLGSALKACGIVGVAVNV-ELIHSCIIKLGYWDEKVVIGSLINSYAKC 262
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ R ++D + +VS T +ISG
Sbjct: 263 RSMSSARVIYDSISEPDLVSSTALISG 289
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQ 62
II+ G ++++++ L++ + A +++ I P + + +I T+D + S
Sbjct: 240 IIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSED 299
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ + G D V+ C + + G ++H K D+ + + L+D
Sbjct: 300 AMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVD 359
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G+ ++ FD+M R+V+SWT++I+ +G + A
Sbjct: 360 MYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDA 401
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+D+ + G+ A F ++ +V +W +I A +GS A+ L+N M+
Sbjct: 350 DIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMV 409
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+G RP+ TF ++ AC KG E + + G S+ +DL + G +
Sbjct: 410 EDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQL 469
Query: 131 DGGRKMFDKMRVR 143
+ K+ K ++
Sbjct: 470 EDAWKLVQKTNLK 482
>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
Length = 739
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I GL D L L+ + +G D A F +I +VF+W ++I A +G +
Sbjct: 59 RMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAFAQNGHHRE 118
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL+L+ M G + ++ T V+ C + + G+ +HG + A +D+ + + L++
Sbjct: 119 ALVLFRQMEREGVKANEVTLAAVLGICSSIKDLAGGRSIHGRVIAA--KKDVVIGNALVN 176
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + R F +M VR VVSWTTMI+ L+ G+ + A
Sbjct: 177 MYSKCGSLREARASFQEMVVRDVVSWTTMITALSEHGEWNEA 218
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMIC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+W MI A T + + + LY MI + D + V++AC + A++ G++VH
Sbjct: 306 SWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACSSLSALKVGRQVHE 365
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V AGF ++ + ++++Y KCG + R++FD M+ R++++W +M+ G G
Sbjct: 366 EIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKARNMIAWNSMMGGYTQHG 421
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ G ++ L ++++ G A VF ++ ++ WN M+ T G
Sbjct: 365 EEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKARNMIAWNSMMGGYTQHGHPK 424
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQ 117
+AL L+ L +G PD+ TF ++ AC + ++ G G +++A F S D +V
Sbjct: 425 RALQLFELACLDGVLPDEITFVTILTACSHAGMVKPGVWHFG-SIRADFGMEPSVDHYV- 482
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRS-----VVSWTTMISGLAASGDLDAA 164
++D+ + G +D ++ ++M S V W +++ D+ A
Sbjct: 483 -CMVDMLGRAGWLDAAERLVERMPAFSNPADEFVPWMALLASCKVHTDVKRA 533
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C+A++ +E+H + G D ++ + L+ +Y K G +D FD++ ++V SW
Sbjct: 49 CLAAV-----EELHCRMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVFSW 103
Query: 149 TTMISGLAASG 159
T +IS A +G
Sbjct: 104 TIVISAFAQNG 114
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVF--SQIRC-PHVFTWNLMIRALTIDGS 59
+II G L +++ + + +G A VF S I C ++ WN ++RA G
Sbjct: 56 QIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGY 115
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL +Y M G D FTFP VI+AC + + + VHG V+ GF ++ V +
Sbjct: 116 CEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNE 175
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LM +Y K G +D RK+F++M VRS VSW TM+SG A + D A
Sbjct: 176 LMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGA 220
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P++ TW ++ + G ++ + L+ M G V+ + A ++GK +
Sbjct: 234 PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVI 293
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
HG VK GF +FV+++L+ LY K G+V+ R +F +++ +++VSW +IS A G
Sbjct: 294 HGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWC 353
Query: 162 DAA 164
D A
Sbjct: 354 DEA 356
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 27 GKTDHALLVFSQIRC--------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
G D A +F Q+ P+V +W+ +I G +AL L+ M + +
Sbjct: 351 GWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKAN 410
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V+ C A+ G+E+HG V++ ++ V + L+++Y K G G +F+
Sbjct: 411 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFE 470
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K+ + ++SW TM++G G
Sbjct: 471 KIENKDLISWNTMVAGYGIHG 491
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + + L+ L+++ + G LVF +I + +WN M+ I G A
Sbjct: 437 VVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENA 496
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ ++ MI +GF PD TF V+ AC + + +G+E+ +K M + ++D
Sbjct: 497 IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVD 556
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
L + G + K+ M V
Sbjct: 557 LLGRAGLLQEASKVVKSMPVE 577
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++Y +D + LLD+ + G+ D A+ VF Q+ + +WN +I G L
Sbjct: 192 VKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTL 251
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M NGF FT+ V A A+E+GK VH +K+G FV +T++D+Y
Sbjct: 252 LMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMY 311
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + RK+FD++ + VV+W +M++ A G
Sbjct: 312 AKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYG 346
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + + +W +I + +AL L M+ F+P+ FTF ++
Sbjct: 113 GAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLL 172
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KA AS + G+++H L VK + D++V S L+D+Y +CG +D +FD++ ++ V
Sbjct: 173 KAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGV 232
Query: 147 SWTTMISGLAASGD 160
SW +I+G A GD
Sbjct: 233 SWNALIAGFARKGD 246
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+I AC +++ + +H + F+ +F+ ++L+ LY KCG V R++FD M R
Sbjct: 70 LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ SWT++I+G A + D A
Sbjct: 130 MCSWTSLIAGYAQNDMPDEA 149
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + +LD+ + G A VF ++ V TWN M+ A G +A
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G ++ TF ++ AC +++GK+ + + ++ T++DL
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDL 411
Query: 124 YLKCG 128
+ G
Sbjct: 412 LGRAG 416
>gi|449442080|ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 83/138 (60%), Gaps = 3/138 (2%)
Query: 25 FYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
FY + A + F ++R V W MI + + G +A+ +++ M+ + F P++F+
Sbjct: 231 FYAQCKDISSAFVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFSNMLSDEFLPNEFS 290
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
V+KAC ++ G+++HGL +K D+FV ++L+D+Y KCG++ R++FD MR
Sbjct: 291 VCSVLKACGEERELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMR 350
Query: 142 VRSVVSWTTMISGLAASG 159
R+ V+WT++I+G A G
Sbjct: 351 NRNTVTWTSIIAGYAREG 368
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 25 FYGKTDHAL---LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
FY K + L +V + V +W +I G +AL MI G P+ FT
Sbjct: 433 FYCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGVEPNSFT 492
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ +KAC A+ +GK +H A K ++FV S L+ +Y KCG V ++FD M
Sbjct: 493 YSSTLKACAKMEAVLQGKMIHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVFDSMP 552
Query: 142 VRSVVSWTTMISGLAASG 159
VR++VSW MI A +G
Sbjct: 553 VRNLVSWKAMILCYARNG 570
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ + ND + L+D+ + G + VF +R + TW +I +G +A
Sbjct: 314 IIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAGYAREGLGEEA 373
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ LM + T +++AC + A G+EVH VK F ++ + STL+
Sbjct: 374 LNLFRLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTLVWF 433
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC + + M +R VVSWT +ISG A G A
Sbjct: 434 YCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAHLGHESEA 474
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ V TW +I + +AL L++ + +G + F ++ C L
Sbjct: 144 VFDEMPMRSVVTWTAIINGYIDLDLTEEALALFSDSVKSGVLANGQMFVCILNLCAKRLD 203
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
E G+++HG+ VK G ++ V S ++ Y +C D+ F++MR R VV WT+MI+
Sbjct: 204 FELGRQIHGVIVK-GNRGNLIVDSAIIYFYAQCKDISSAFVAFERMRRRDVVCWTSMITS 262
Query: 155 LAASG 159
+ G
Sbjct: 263 CSQQG 267
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 83 PFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
P++I + +S +++K + VH ++ S ++V + L+ YL+ G + RK+FD+M
Sbjct: 90 PYLIGVWLRSSRSVKKLRAVHAFILRNFTSFGIYVGNNLLSSYLRLGMLVDARKVFDEMP 149
Query: 142 VRSVVSWTTMISG 154
+RSVV+WT +I+G
Sbjct: 150 MRSVVTWTAIING 162
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSS 60
++I L + L LL+L + G D LL+FS +V +W +I LT
Sbjct: 52 QLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRP 111
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL +N M +G P+ +TF V+ AC + A G+++H L K GF ++FV S L
Sbjct: 112 FKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSAL 171
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KC D+ K+F++M VR++VSW TMI G + D A
Sbjct: 172 VDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQA 215
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 22 LCSFYGK----TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L YGK D A L FS V TWN+MI A + + A + +M G P
Sbjct: 273 LSDMYGKCGLFNDVAKL-FSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIP 331
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D+ ++ V+ +C A+ +G +H +++GF +++ V S+L+ +Y KCG + ++F
Sbjct: 332 DEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIF 391
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
++ R+VV WT +I+ G
Sbjct: 392 EETEDRNVVCWTAIIAACQQHG 413
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSS 60
+ ++G + +V L+D+ Y K L+ VF ++ ++ +WN MI +
Sbjct: 156 VWKHGFLAEVFVVSALVDM---YAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLY 212
Query: 61 LQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
QA+ + L++ N D+ +F V AC + +E GK+VHG+A+K G +++ ++
Sbjct: 213 DQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNS 272
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L D+Y KCG + K+F R VV+W MI + + + A
Sbjct: 273 LSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDA 317
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+IIR G + + L+ + + G A +F + +V W +I A G +
Sbjct: 357 NQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHAN 416
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDM 114
+ L+ M+ G +PD TF V+ AC + +E+G +VHG + G
Sbjct: 417 WVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHG--IYPGHEH-- 472
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDL 161
+ ++DL + G++D ++ + M ++ S W ++S +L
Sbjct: 473 --YACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNL 518
>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + + + L+DL G A F ++ C + WN+M+ ++ + +A
Sbjct: 121 IVKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEA 180
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ LM F D FTF ++ +C + G+++HGL++K F D+ V S L+D+
Sbjct: 181 SGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDM 240
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y K ++D RK FD M R+VVSW TM+ G GD
Sbjct: 241 YAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGD 277
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMI------RALT 55
+I+ G N L ++L++ ++A +F ++ +V TWN +I R
Sbjct: 12 SHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVDCRGSD 71
Query: 56 IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+ S + M+ + D T +++AC+ +E G+E+H VK GF+ + F
Sbjct: 72 YESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSF 131
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
V S L+DLY KCG V R+ FD++ R +V W M+S A
Sbjct: 132 VNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYA 172
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 43/61 (70%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ +GK+VH +K GF + +Q+ ++++Y+KC D + ++FD+M VR+VV+W T+I G
Sbjct: 4 LREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICG 63
Query: 155 L 155
L
Sbjct: 64 L 64
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ D L+ L+D+ + D A F + +V +WN M+ G +A+
Sbjct: 223 IKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAM 282
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M RPD+ T +I++C ++L + +V+ +K GF + + + L++ Y
Sbjct: 283 KLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAY 342
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
K G + + F+ + +V+WT++I A
Sbjct: 343 SKGGSIAMALQCFNTVLEPDLVTWTSLIGAYA 374
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 52/128 (40%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
+ L++ S G AL F+ + P + TW +I A ++ + M+ +G
Sbjct: 334 IANALINAYSKGGSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADG 393
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
PD+ F V+ AC + + +G L + + L+DL + G +D
Sbjct: 394 VWPDQIVFLEVLSACSHAGLVNEGLHYFSLMKDYHILPGLEHYTCLIDLLGRAGLLDEAF 453
Query: 135 KMFDKMRV 142
+ + M +
Sbjct: 454 NILNSMSI 461
>gi|449491452|ref|XP_004158900.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 547
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 84/149 (56%)
Query: 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
VR +L S +G + +L+F I+ P+ F N +I+A ++ L+A+ +Y + NG
Sbjct: 85 VRAVLLQASEFGDIVYTVLIFRHIKVPNTFCVNRVIKAYSLSTVPLEAVFVYFEWLGNGL 144
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
RPD +TF + AC + G++ HG A K G M + ++L+ +Y C ++ GRK
Sbjct: 145 RPDSYTFLSLFSACASFGCGASGRKCHGQAFKNGVDSVMVLGNSLIHMYGCCKHIELGRK 204
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M + +VSW ++++ A GDL A
Sbjct: 205 VFDEMSTQDLVSWNSIVTAYARVGDLYTA 233
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+V +WNLMI G+ A+ L+ M+ G R + T V+ AC S + +G+ VH
Sbjct: 244 NVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLNEGRSVH 303
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
G +A +F+ + L+D+Y KC V R++FD++ +R++V+W MI G + G+
Sbjct: 304 GFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRLMIRNLVTWNAMILGHSLHGN 361
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC---NGFRPDKFTFPFVIKACIA 91
F ++ + TWN +I + +G AL +Y M+ G +PD TF + AC
Sbjct: 116 TFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTV 175
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
I +G+E+ V +G++ D VQ+ L+++Y KCG ++ RK+FD+++ R V++W TM
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTM 235
Query: 152 ISGLAASG 159
ISG A G
Sbjct: 236 ISGYAKQG 243
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + G ++D ++ L+++ S G + A VF +++ V WN MI G++ Q
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M N +P+ TF ++ AC +E+G+ +H + G+ D+ + + L++
Sbjct: 248 ALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLN 307
Query: 123 LYLKC-GDVDGGRKMFDKMRVRSVVSWTTMI 152
+Y KC ++ R++F++MR R V++W +I
Sbjct: 308 MYTKCSSSLEEARQVFERMRTRDVITWNILI 338
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G AL VF I P+ +W L++ A +G +AL Y M+ G RPD F I
Sbjct: 6 GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
C +S +++G+ +H + ++ D+ + + L+ +Y +C D++ RK FD+M +++
Sbjct: 66 GVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125
Query: 146 VSWTTMISGLAASGD 160
V+W +I+G + +GD
Sbjct: 126 VTWNALIAGYSRNGD 140
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 5/161 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
+K+ G +D ++ LL++ CS + A VF ++R V TWN++I A G
Sbjct: 288 RKVREDGYESDLVIGNVLLNMYTKCS--SSLEEARQVFERMRTRDVITWNILIVAYVQYG 345
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ AL ++ M P++ T V+ AC A +GK VH L D+ +++
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+LM++Y +CG +D +F +R +S+VSW+T+I+ A G
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+++ + G D + VF+ IR + +W+ +I A G S L + ++
Sbjct: 400 DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELL 459
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G D T + AC +++G + + G + D ++DL + G +
Sbjct: 460 QEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRL 519
Query: 131 DGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
+ + M + V+WT+++SG D A
Sbjct: 520 EAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRA 554
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQA 63
+ GLS D + L+ + +G D A VF + R + +WN M+ A + A
Sbjct: 127 VSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDA 186
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ +G RP++F F V+ AC S +E G++VH + V+ G+ +D+F + L+D+
Sbjct: 187 VELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDM 246
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K GD+ +F K+ VVSW ISG G
Sbjct: 247 YSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHG 282
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ G +D +V L+D Y K + +A VF + ++ + MI AL+
Sbjct: 434 KIGFLSDSHVVNGLID---SYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGED 490
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M+ G PD F ++ AC + A E+GK+VH +K F D+F + L+
Sbjct: 491 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVY 550
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ F + + VVSW+ MI GLA G
Sbjct: 551 TYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHG 587
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D L+D+ S G A LVF ++ V +WN I + G A
Sbjct: 228 VVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHA 287
Query: 64 LLLYNLMICNGFRPDKFTFPFVIK--ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L M +G P+ FT ++K A + A G+++HG +KA D ++ L+
Sbjct: 288 LELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALV 347
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K G +D RK+F+ + + ++ W +ISG + G
Sbjct: 348 DMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG 385
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L SFY K A VF + P +W+ ++ A + + +AL + M G R +
Sbjct: 43 LLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCN 102
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F P V+K C + G +VH +AV G S D+FV + L+ +Y G VD R++FD
Sbjct: 103 EFALPIVLK-CAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFD 159
Query: 139 K-MRVRSVVSWTTMISGL 155
+ R R+ VSW M+S
Sbjct: 160 EAARDRNAVSWNGMMSAF 177
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ +D + L+D+ + YG D A VF I + WN +I + G ++
Sbjct: 331 MIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGES 390
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G ++ T V+K+ + AI +VH LA K GF D V + L+D
Sbjct: 391 LSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDS 450
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y KC + K+F++ +++++T+MI+ L+
Sbjct: 451 YWKCNCLRYANKVFEEHSSDNIIAFTSMITALS 483
>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 79/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D L+D+ S G + A +VF +I V +WN +I G +A
Sbjct: 228 VVRTGYDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRA 287
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L M G P+ FT V+KAC + A G+++HG +KA D FV L+D+
Sbjct: 288 LELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDM 347
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G +D RK+FD M R ++ W +ISG + G
Sbjct: 348 YAKDGFLDDARKVFDFMPRRDLILWNALISGCSHDG 383
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLY 67
L D + L+ + +G D A +F + + +WN MI A + A+ ++
Sbjct: 131 LIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVF 190
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G RP++F F V+ AC S E G++VHG+ V+ G+ +D+F + L+D+Y K
Sbjct: 191 REMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKL 250
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
GD++ +F+K+ VVSW +I+G G
Sbjct: 251 GDIEMAAVVFEKIPAADVVSWNALIAGCVTHG 282
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL +D +V L+D G+ D+A+ VF + + + M+ AL+ A+
Sbjct: 434 KIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIK 493
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M+ G PD F ++ AC + A E+GK+VH +K F+ D+F + L+ Y
Sbjct: 494 LFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTYA 553
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ F + + VVSW+ MI GLA G
Sbjct: 554 KCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHG 587
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ +D+ + L+D+ + G D A VF + + WN +I + DG +
Sbjct: 329 MIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEV 388
Query: 64 LLLYNLMICNGFRPD--KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L++ M G D + T V+K+ + AI K+VH LA K G D V + L+
Sbjct: 389 LSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLI 448
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D Y KCG +D K+F++ ++S T+M++ L+
Sbjct: 449 DSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALS 483
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L SFY + A VF +I P +W+ ++ A + +G AL + M G +
Sbjct: 43 LLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCN 102
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ P V+K C + G +VH LAV +D+FV + L+ +Y G VD +++FD
Sbjct: 103 EYALPIVLK-CAPD--VRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFD 159
Query: 139 KM-RVRSVVSWTTMIS 153
+ R+ VSW MIS
Sbjct: 160 EPGGERNAVSWNGMIS 175
>gi|334186610|ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|223635634|sp|O23491.2|PP315_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16470
gi|332658358|gb|AEE83758.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 501
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + ++ L KLL L + G A ++F ++ + WN MI G + L +Y
Sbjct: 138 GFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIY 197
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M N PD++TF V +AC A +E GK H + +K ++ V S L+D+Y KC
Sbjct: 198 YDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKC 257
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
G ++FD++ R+V++WT++ISG G +
Sbjct: 258 SSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKV 291
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
++ L + G +A+ L+ +G + + T+ +++ C KGK +H GF
Sbjct: 83 LKGLCVTGRLKEAV---GLLWSSGLQVEPETYAVLLQECKQRKEYTKGKRIHAQMFVVGF 139
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ + +++ L+ LY GD+ +F +++R ++ W MISG G
Sbjct: 140 ALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKG 188
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF Q+ +V TW +I G + L + M G RP+ TF V+ AC
Sbjct: 266 VFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGL 325
Query: 95 IEKGKE 100
++KG E
Sbjct: 326 VDKGWE 331
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL+ D +V KL L + Y HA +F + C V+ WN ++R+ ++G ++ L
Sbjct: 28 LKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETL 87
Query: 65 LLYNLMICNGF---RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L++ M + RPD +T +K+C +E GK +HG +K DMFV S L+
Sbjct: 88 SLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMFVGSALI 146
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+LY KCG ++ K+F + VV WT++I+G +G + A
Sbjct: 147 ELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELA 189
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ R G L +L+L YGKT A +F ++ + +W+ M+ +G+
Sbjct: 232 VKRRGFDTKLCLANSILNL---YGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAE 288
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL L+N MI ++ T ++AC +S +E+GK++H LAV GF D+ V + L
Sbjct: 289 TNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTAL 348
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
MD+YLKC + ++F++M + VVSW + SG A G
Sbjct: 349 MDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIG 387
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 80/160 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ YG D + L+D+ ++A+ +F+++ V +W ++ G + ++L
Sbjct: 334 VNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSL 393
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ NG RPD ++ A +++ +H K+GF + F+ ++L++LY
Sbjct: 394 GVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELY 453
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC +D K+F +R VV+W+++I+ G + A
Sbjct: 454 AKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEA 493
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ + +D + L++L S G+ + A+ VF++ P V W +I +GS AL
Sbjct: 131 LKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELAL 190
Query: 65 LLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M+ PD T AC G+ VHG + GF + + +++++L
Sbjct: 191 AFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNL 250
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G + +F +M + ++SW++M++ A +G
Sbjct: 251 YGKTGSIRIAANLFREMPYKDIISWSSMVACYADNG 286
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G N++ + L++L + D+A VF +R V TW+ +I A G +A
Sbjct: 434 VTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEA 493
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
L L + M + +P+ TF ++ AC + IE+G K H + + ++ ++
Sbjct: 494 LKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMV 553
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS 144
DL + G++D M + M +++
Sbjct: 554 DLLGRMGELDKALDMINNMPMQA 576
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++++ GL D + K L C +D +A +VF P F WNLMIR +
Sbjct: 36 RMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDE 95
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++LLLY M+C+ + +TFP ++KAC A E+ ++H K G+ D++ ++
Sbjct: 96 PERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNS 155
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L++ Y G+ +FD++ VSW ++I G +G +D A
Sbjct: 156 LINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIA 200
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK D AL +F ++ + +W MI + +AL L++ M + PD + +
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E+GK +H K D + L+D+Y KCG+++ ++F ++ +SV
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 147 SWTTMISGLAASG 159
+WT +ISG A G
Sbjct: 315 AWTALISGYAYHG 327
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ + G+ + AL VF I+ V W +I G +A+ + M
Sbjct: 281 DSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------LMDLYL 125
G +P+ TF V+ AC + +E+GK + RD ++ T ++DL
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGK-----LIFYSMERDYNLKPTIEHYGCIVDLLG 395
Query: 126 KCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
+ G +D ++ +M ++ + V W ++
Sbjct: 396 RAGLLDEAKRFIQEMPLKPNAVIWGALLKA 425
>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
Length = 712
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 10/161 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD-----HALLVFSQIRCPHVFTWNLMIRALTIDG 58
II GL D LV KL+ FY + H L+ S + P +WN++I +
Sbjct: 105 IISSGLVEDSFLVSKLV---MFYSSLEFLPEAHTLVETSNLFRP--CSWNILITSYVKHK 159
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
A+L Y M+ G RPD FTFP ++KAC + ++ G EVH +FV +
Sbjct: 160 LYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHN 219
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+ +Y +CG+VD R +FD M R VSW +MIS ++ G
Sbjct: 220 ALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRG 260
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA ++F TWN M+ LT G +AL L+ ++ G PD TF ++ C
Sbjct: 369 HAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCA 428
Query: 91 ASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ G+E H K RD + + + L+D+Y + G V +++F + + V++T
Sbjct: 429 RVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYT 488
Query: 150 TMISGLAASGD 160
++I+G G+
Sbjct: 489 SLIAGYGMQGE 499
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+V TWN++ G+ QAL L + M G D + AC AI GKE+H
Sbjct: 280 NVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIH 339
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
G ++ VQ+ L+ +Y +C D+ +F +S ++W +M+SGL G ++
Sbjct: 340 GFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVE 399
Query: 163 AA 164
A
Sbjct: 400 EA 401
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 14/157 (8%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
LL L+D+ + GK A +F + T+ +I + G +A+ L+ M
Sbjct: 454 LLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRF 513
Query: 74 GFRPDKFTFPFVIKACI-------ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+PD T V+ AC A L + + VHGL+ + + + + DL+ +
Sbjct: 514 QIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPR------LEHYACMADLFGR 567
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
G ++ +++ +M R + W T+I G++D
Sbjct: 568 VGLLNKAKEIITRMPYRPTSAIWATLIGACCIHGNMD 604
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ L V LLD+ S G ++A+ VF ++ V +W +I +G S + +
Sbjct: 328 IKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGI 387
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G RPD FT V+ AC S ++E GK+VH + +D V ++LMD+Y
Sbjct: 388 RLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMY 447
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ +F +M + +VSW TMI G + +G
Sbjct: 448 AKCGSMEDANLVFLEMPNKDIVSWNTMIGGYSKNG 482
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
+ D+++ L+D+ + G + A LVF ++ + +WN MI + +G + L L+
Sbjct: 432 NMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGYSKNGRPNETLHLF 491
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +PD T ++ AC + A+++G+E+HG + G D+ V + L+D+Y KC
Sbjct: 492 VAMV-QELKPDGRTMACILPACASLAALDRGREIHGYIQRNGCFDDLHVANALIDMYAKC 550
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
G + R FD + V+ ++SWT MI+G
Sbjct: 551 GALALARLFFDMIPVKDLISWTVMIAG 577
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L SFY KT + A VF +++ + +WN MI + + + ++ M+ G D
Sbjct: 241 LISFYFKTRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFD 300
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V+ AC S G+ +H A+KA + M +TL+D+Y KCGD++ ++F
Sbjct: 301 LVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQ 360
Query: 139 KMRVRSVVSWTTMISGLAASG 159
KM RSVVSWT++I+G A G
Sbjct: 361 KMGERSVVSWTSLIAGYAREG 381
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D LL KL+ + G ++F +I VF WNLM+ G+ +++ L+
Sbjct: 129 GIFVDGLLGTKLVFMYVNCGDIREGRVIFDKIANEKVFLWNLMLSGYAKIGAFEESVYLF 188
Query: 68 NLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M+ G + + T ++K C A+L ++++G+ VHG +K GF V ++L+ Y K
Sbjct: 189 RKMLDLGIQVNSHTVSCILK-CFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFK 247
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
++ ++FD+++ R +VSW +MISG A+
Sbjct: 248 TRKIEAAYEVFDELKNRDIVSWNSMISGTVAN 279
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D T+ +++ C ++++GK+VH +G D + + L+ +Y+ CGD+ GR +F
Sbjct: 98 DSNTYCSILQLCAELNSLQEGKKVHSFISSSGIFVDGLLGTKLVFMYVNCGDIREGRVIF 157
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
DK+ V W M+SG A G + +
Sbjct: 158 DKIANEKVFLWNLMLSGYAKIGAFEES 184
>gi|255562005|ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538815|gb|EEF40415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 585
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF + ++ TW LMI G A+ L+N MI +GF PD +T V+
Sbjct: 228 GDVEGACKVFDNMSERNIVTWTLMISRFQQLGYYRDAIDLFNHMIFSGFMPDNYTLSGVV 287
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC---GDVDGGRKMFDKMRVR 143
AC + GKE+H A+K+G D+ V +L+D+Y KC G +D RK+FD+M
Sbjct: 288 SACAELGLLSLGKELHSWAIKSGLVYDVCVGCSLVDMYAKCAVDGSLDDSRKVFDRMTNH 347
Query: 144 SVVSWTTMISGLAASGDLD 162
+V+SWT +I+G +G D
Sbjct: 348 NVMSWTAIITGYVQNGRSD 366
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVF-SQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + GL D +++ L+ L S G+ + A +F S + +W+ +I +G
Sbjct: 101 LTQSGLELDSVILNSLISLYSKCGELNSANDIFISMGNKRDLVSWSALISCYATNGLEFD 160
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLM 121
A+ +Y M+ +GF P+++ + VIK+C G+ + G +K G+ + + V L+
Sbjct: 161 AIRVYIDMLVSGFFPNEYCYSAVIKSCSNRENFSYGEIIFGSLIKCGYLNSHVCVGCALI 220
Query: 122 DLYLK-CGDVDGGRKMFDKMRVRSVVSWTTMIS 153
D+Y K CGDV+G K+FD M R++V+WT MIS
Sbjct: 221 DMYAKGCGDVEGACKVFDNMSERNIVTWTLMIS 253
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 85/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G ++ + L+ + S ++A F + ++ ++N ++ A +S +A
Sbjct: 412 VKLGFASVNCVGNSLISMYSRCDNMENARKAFDVLFEKNLVSYNTIVEAYAKGLNSEEAF 471
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+N + GF + FTF ++ + AI KG+++H +K+ F ++ + + L+ +Y
Sbjct: 472 ELFNEIEDTGFVVNAFTFASLLSGASSIGAIGKGEQIHARILKSDFKTNLHISNALISMY 531
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+CGD++ ++F+ M R+V+SWT+MI+G A G
Sbjct: 532 SRCGDIEAAFQVFNGMGDRNVISWTSMITGYAKHG 566
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 5 IRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG-SS 60
I+ GL D + L+D+ C+ G D + VF ++ +V +W +I +G S
Sbjct: 307 IKSGLVYDVCVGCSLVDMYAKCAVDGSLDDSRKVFDRMTNHNVMSWTAIITGYVQNGRSD 366
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++A L+ MI +P+ FTF ++KAC + G++ + AVK GF+ V ++L
Sbjct: 367 MEATELFLEMIEGHVKPNHFTFSSILKACANLSDLHLGEQFYAHAVKLGFASVNCVGNSL 426
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+ +Y +C +++ RK FD + +++VS+ T++ A
Sbjct: 427 ISMYSRCDNMENARKAFDVLFEKNLVSYNTIVEAYA 462
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A++ ++M N PD T+ ++K+CI S +KGK VH ++G D + ++L+
Sbjct: 58 KAIIALDVMTQNNTHPDLITYSLLLKSCIRSNNFQKGKLVHNCLTQSGLELDSVILNSLI 117
Query: 122 DLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG-DLDA 163
LY KCG+++ +F M R +VSW+ +IS A +G + DA
Sbjct: 118 SLYSKCGELNSANDIFISMGNKRDLVSWSALISCYATNGLEFDA 161
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 85/154 (55%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G +D + L+++ S GK + + VFS++ V WN MI +I+ AL
Sbjct: 446 KLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALA 505
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ M GF P +F+F + +C ++ +G+++H +K G+ ++FV S+L+++Y
Sbjct: 506 CFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYC 565
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCGDV R FD M +++V+W MI G A +G
Sbjct: 566 KCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNG 599
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++ + LL + + G + A VF I P+ T+ M+ L+ +
Sbjct: 164 VLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEG 223
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAI------------EKGKEVHGLAVKAGFS 111
L L+ LM+ G D + ++ C ++ +GK++H LAVK GF
Sbjct: 224 LELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFE 283
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ + ++L+D+Y K GD+D +F+ + SVVSW MISG D + A
Sbjct: 284 RDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKA 336
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q++ G D + +L C G +F + P + +WN ++
Sbjct: 341 QRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHG 400
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ L+ M PD+ T ++ +C +E GK+VH ++ K GF D++V S+L+
Sbjct: 401 EAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLI 460
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++Y KCG ++ + +F K+ VV W +MI+G +
Sbjct: 461 NVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFS 495
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 32/191 (16%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRA--------- 53
+I R+ L +D L L+DL S + A VF +I ++F++N ++ A
Sbjct: 30 RIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCKSNNLQY 89
Query: 54 ----------------------LTIDGSSLQALLLYNLM-ICNGFRPDKFTFPFVIKACI 90
+ +G QAL Y+LM + +P TF V AC
Sbjct: 90 ACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACG 149
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ G+ HGL +K GF +++V + L+ +Y KCG + ++F+ + + V++TT
Sbjct: 150 GLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTT 209
Query: 151 MISGLAASGDL 161
M+ GL+ + +
Sbjct: 210 MMGGLSQTNQV 220
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+++G D L LLD+ + G D A VF + V +WN+MI S +AL
Sbjct: 278 VKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKAL 337
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ M C G+ PD T+ ++ AC+
Sbjct: 338 ECFQRMQCCGYEPDDVTYINMLTACV---------------------------------- 363
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K GDV GR++FD M S++SW ++SG S D A
Sbjct: 364 -KSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEA 402
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G ++ + L+++ G A F + ++ TWN MI +G L+
Sbjct: 544 QIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLE 603
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
A+ LY MI +G +PD TF V+ AC S +++G E+
Sbjct: 604 AVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEI 642
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++++CI + ++ K +H + D F+ + L+DLY KC + +FDK+ ++
Sbjct: 11 LLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKN 70
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ S+ ++S S +L A
Sbjct: 71 IFSYNAILSAFCKSNNLQYA 90
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NL 69
ND +L +L+ + + G + LVF + ++ WN ++ T +G + ++ +L
Sbjct: 77 NDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDL 136
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+ F+PD FTFP VIKAC L + G+ +HG+ +K G D+FV + L+ +Y KCG
Sbjct: 137 VSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGA 196
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VD K+FD M ++VSW +MI + +G
Sbjct: 197 VDEAMKVFDFMPETNLVSWNSMICAFSENG 226
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF I V +WN +I +G +AL L M +G +PD FT ++
Sbjct: 399 GALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLL 458
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC +++ GKE+HG ++ G D FV ++L+ Y+ CG R +FD+M+ +++V
Sbjct: 459 LACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLV 518
Query: 147 SWTTMISGLAASG 159
SW MISG + +G
Sbjct: 519 SWNAMISGYSQNG 531
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL D + L+ + G D A+ VF + ++ +WN MI A + +G S +
Sbjct: 172 VIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDS 231
Query: 64 L-LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
LL ++ G PD T ++ C ++ G +HGLAVK G S ++ V + ++
Sbjct: 232 FDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVY 291
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG ++ + F K ++VVSW TMIS + GD++ A
Sbjct: 292 MYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEA 333
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL D + LL GK A ++F +++ ++ +WN MI + +G ++
Sbjct: 477 VLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYES 536
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ + G + + V AC A+ GKE HG +KA + D FV +++D+
Sbjct: 537 LALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDM 596
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
Y K G + RK+FD ++ ++V SW +I
Sbjct: 597 YAKSGCIKESRKVFDGLKDKNVASWNAII 625
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GLS + ++ ++ + S G + A + F + +V +WN MI A +++G +A
Sbjct: 275 VKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAF 334
Query: 65 LLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L M G + ++ T V+ AC+ L + KE+HG + + F + + + + +
Sbjct: 335 NLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF-QHVELSNAFIL 393
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ K+F + ++V SW +I G A +GD
Sbjct: 394 AYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGD 431
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST-LMDLYLKCGDVDGGRKMF 137
K +++AC IE G+ +H + R+ +V +T L+ +Y CG R +F
Sbjct: 43 KEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVF 102
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D M ++++ W ++SG +G
Sbjct: 103 DNMETKNLIQWNALVSGYTRNG 124
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+ D + ++D+ + G + VF ++ +V +WN +I A I G +A+ LY
Sbjct: 584 TEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYER 643
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAGFSRDMFVQSTLMDLYL 125
M G PD+FT+ ++ AC + +E+G KE+ + + + L+D+
Sbjct: 644 MKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNL---IEPKLEHYACLIDMLA 700
Query: 126 KCGDVDGGRKMFDKM 140
+ G +D ++ ++M
Sbjct: 701 RAGRLDDALRLVNEM 715
>gi|255587727|ref|XP_002534373.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525413|gb|EEF28011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 207
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT-DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G N LL KL+ S + D+A +F ++ VF WN +IR G +A
Sbjct: 50 ITTGFHNSLLLSTKLITSASALSSSMDYARKLFDKMPQRDVFLWNTLIRGYADLGPYQEA 109
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++LY M +GF PD +TFPFV+++C A+++GKEV+ +K GF D+F Q + +
Sbjct: 110 VMLYKTMHHDGFLPDNYTFPFVVRSCAVISALKEGKEVYCNVIKNGFDLDVFAQCFSLYV 169
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ GD + G F ++ VR++VSWT + +G +G
Sbjct: 170 CSRWGDFEKG-DCFGEVVVRNIVSWTAVTAGYVQNG 204
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLM-DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
K H L + GF + + + L+ +D RK+FDKM R V W T+I G A
Sbjct: 43 KLTHALTITTGFHNSLLLSTKLITSASALSSSMDYARKLFDKMPQRDVFLWNTLIRGYAD 102
Query: 158 SGDLDAA 164
G A
Sbjct: 103 LGPYQEA 109
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + L L+++ S G+ DHAL +F + ++ +W MI L+ + +A
Sbjct: 31 LICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEA 90
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G P +F F I+AC + +IE GK++H LA+K G ++FV S L D+
Sbjct: 91 IRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDM 150
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + K+F++M + VSWT MI G + G+ + A
Sbjct: 151 YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFS-QIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D + L D+ S G + A VF C +V ++ +I +
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L ++ + G P++FTF +IKAC A+E+G ++H +K F D FV S L+D
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG ++ + FD++ + ++W +++S G
Sbjct: 353 MYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHG 389
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+++G+ ++ + L D+ S G A VF ++ C +W MI + G +AL
Sbjct: 133 LKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEAL 192
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L + MI D+ + AC A A + G+ VH VK GF D+FV + L D+Y
Sbjct: 193 LAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMY 252
Query: 125 LKCGDVDGGRKMFD-KMRVRSVVSWTTMISGLAASGDLD 162
K GD++ +F R+VVS+T +I G + ++
Sbjct: 253 SKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIE 291
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D VI+ + + +GK++H L + AG++ F+ + L+++Y KCG++D K+F
Sbjct: 4 DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D M R++VSWT MISGL+ + A
Sbjct: 64 DTMPQRNLVSWTAMISGLSQNSKFSEA 90
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ D + L+D+ G +HA+ F +I P WN ++ G
Sbjct: 334 QVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKD 393
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
A+ + M+ G +P+ TF ++ C + +E+G + + + G S ++
Sbjct: 394 AIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVI 453
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGD 160
DL + G + ++ ++M + W + + GD
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGD 493
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 5 IRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G+S+D +L LLDL CS KT H + ++ +V WN+M+ A + +
Sbjct: 399 IKAGMSSDIILEGALLDLYVKCSDI-KTAHEFFLSTETE--NVVLWNVMLVAYGLLDNLN 455
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
++ ++ M G P++FT+P +++ C + A++ G+++H +K GF +++V S L+
Sbjct: 456 ESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLI 515
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D+Y K G +D K+F +++ + VVSWT MI+G A
Sbjct: 516 DMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA 550
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + GK DHAL +F +++ V +W MI +
Sbjct: 498 QVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAE 557
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M G D F I AC A+ +G+++H A +G+S D+ V + L+
Sbjct: 558 ALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVS 617
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY +CG V FDK+ + +SW ++ISG A SG + A
Sbjct: 618 LYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEA 659
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI++ G + +L +L+DL +G D A+ VF ++ + WN ++ + +
Sbjct: 93 KILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGR 152
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC----IASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
L L+ M+ +PD+ T+ V++ C + +EK +H + G+ +FV +
Sbjct: 153 VLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEK---IHARTITHGYENSLFVCN 209
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+DLY K G ++ +K+FD ++ R VSW M+SGL+ SG + A
Sbjct: 210 PLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEA 255
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I +G N + L+DL G + A VF ++ +W M+ L+ G +
Sbjct: 195 RTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEE 254
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+LL+ M +G P + F V+ AC + G+++HGL +K GFS + +V + L+
Sbjct: 255 AVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVT 314
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY + G+ ++F+ M R VS+ ++ISGL+ G D A
Sbjct: 315 LYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKA 356
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G S + + L+ L S G A VF+ + ++N +I L+ G S +A
Sbjct: 297 VLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKA 356
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + +PD T ++ AC + A+ GK+ H A+KAG S D+ ++ L+DL
Sbjct: 357 LELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDL 416
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y+KC D+ + F +VV W M L A G LD
Sbjct: 417 YVKCSDIKTAHEFFLSTETENVVLWNVM---LVAYGLLD 452
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S+D + L+ L + GK A F +I +WN +I G +AL L+
Sbjct: 604 GYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLF 663
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M G + FTF + A ++ GK++H + +K G + V + L+ LY KC
Sbjct: 664 SQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKC 723
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G++D + F +M ++ +SW M++G + G
Sbjct: 724 GNIDDAERQFFEMPEKNEISWNAMLTGYSQHG 755
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%)
Query: 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
A + D + +LM G R + T+ +++ C++S G ++HG +K GF
Sbjct: 42 AYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCA 101
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
++ + LMDLY+ GD+DG +FD+M VR + W ++ A
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVA 146
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 82/142 (57%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL + + ++A VF ++ ++F+WN+++ G +AL LY+ M+ G +PD
Sbjct: 143 LLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLWVGIKPD 202
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+TFP V+++C + +GKE+H ++ GF D+ + L+ +Y+KCG V R +FD
Sbjct: 203 IYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGSARTVFD 262
Query: 139 KMRVRSVVSWTTMISGLAASGD 160
KM R +SW MISG +G+
Sbjct: 263 KMLQRDRISWNAMISGYFENGE 284
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 70/151 (46%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+G D V L+ + G A VF ++ +WN MI +G ++
Sbjct: 229 VIRFGFETDVSAVNALITMYVKCGCVGSARTVFDKMLQRDRISWNAMISGYFENGECVEG 288
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ PD T VI AC G+E+HG V+ G+ D+ V S L+ +
Sbjct: 289 LNLFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGYGNDVSVHSLLIQM 348
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y G K+F + R VVSWT MISG
Sbjct: 349 YASLGYWKEAEKVFSETECRDVVSWTAMISG 379
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G ND + L+ + + G A VFS+ C V +W MI + +A
Sbjct: 330 VVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHDKA 389
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y M G PD+ T V+ AC + ++ G +H LA + G + V ++L+D+
Sbjct: 390 LETYKNMELAGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLMSFVIVANSLIDM 449
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC +D ++F ++ ++V+SWT++I GL
Sbjct: 450 YSKCKCIDKALEVFHCIQDKNVISWTSIILGL 481
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + ++ L+D+ S D AL VF I+ +V +W +I L I+ S +AL
Sbjct: 433 RMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSIILGLRINNRSFEALS 492
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ M N +P+ T V+ AC A+ GKE+H A+K + F+ + ++D+Y+
Sbjct: 493 FFRKMKRN-LKPNSITLISVLSACARIGALMCGKEIHAHALKTAMVYEGFLPNAILDMYV 551
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+CG + F+ + V +W ++ G A G
Sbjct: 552 RCGKLGLALNQFNLYK-EDVAAWNILMRGYAEQGQ 585
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ L +LD+ GK AL F+ + V WN+++R G A+ L++ MI
Sbjct: 539 EGFLPNAILDMYVRCGKLGLALNQFNLYK-EDVAAWNILMRGYAEQGQGAMAVELFHKMI 597
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGK 99
+ PD T+ ++ AC S +E+ K
Sbjct: 598 ESKVNPDDVTYIALLCACSRSGMVEEAK 625
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ + G A LVFS++R + +WN +I + + + +AL L+NL++
Sbjct: 280 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 339
Query: 72 CNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
F PD+ T V+ AC + A +KG+E+HG ++ G+ D V ++L+D+Y KCG +
Sbjct: 340 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 399
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+FD + + +VSWT MI+G G
Sbjct: 400 LLAHMLFDDIASKDLVSWTVMIAGYGMHG 428
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY K D A VF ++ V +WN +I +G + + L ++ M+ +G D
Sbjct: 85 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 144
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V C S I G+ VH + VKA FSR+ +TL+D+Y KCGD+D + +F
Sbjct: 145 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 204
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+M RSVVS+T+MI+G A G
Sbjct: 205 EMSDRSVVSYTSMIAGYAREG 225
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ S + LLD+ S G D A VF ++ V ++ MI +G + +A+
Sbjct: 172 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 231
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD +T V+ C +++GK VH + D+FV + LMD+Y
Sbjct: 232 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 291
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG + +F +MRV+ ++SW T+I G + +
Sbjct: 292 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 325
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 70/124 (56%)
Query: 36 FSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95
F +++ WN+++ L G ++ L+ M+ +G D +TF V K+ + ++
Sbjct: 1 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60
Query: 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
G+++HG +K+GF V ++L+ YLK VD RK+FD+M R V+SW ++I+G
Sbjct: 61 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120
Query: 156 AASG 159
++G
Sbjct: 121 VSNG 124
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +D+ + L+D+ + G A ++F I + +W +MI + G +A
Sbjct: 374 IMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEA 433
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ L+N M G D+ +F ++ AC S +++G
Sbjct: 434 IALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 468
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+ + S GK + A +F +I + WN M+ L+++ +A + M
Sbjct: 453 DIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMR 512
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G P +F++ V+ C ++ +G++VH + G+ D FV S L+D+Y KCGDVD
Sbjct: 513 EKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVD 572
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R +FD M ++ V+W MI G A +G D A
Sbjct: 573 AARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA 605
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 84/156 (53%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q++ +G D++ +L C G + +F + P + +WN ++ + + +
Sbjct: 341 LQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENH 400
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+ L+ M PD+ T ++ + + +E G++VH ++ KA F D+++ S L
Sbjct: 401 KEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGL 460
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+ +Y KCG V+ +++FD++ +V W +M++GL+
Sbjct: 461 IGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLS 496
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 77/135 (57%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
+ A ++F+++ ++ +WN +I ALT +G +AL +Y M GF P FT V+ AC
Sbjct: 88 EDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSAC 147
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
A + +E G+ HG+++K G +++V + L+ +Y KC + + F + + VS+T
Sbjct: 148 GALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFT 207
Query: 150 TMISGLAASGDLDAA 164
M+ GLA S ++ A
Sbjct: 208 AMMGGLADSDQVNEA 222
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 35/160 (21%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++G +D L LLD+ + G D A ++F + V +WN+MI S +A+
Sbjct: 279 IKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAI 338
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M +GF PD+ T+ ++ ACI
Sbjct: 339 EYLQRMQYHGFEPDEITYVNMLVACI---------------------------------- 364
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K GD++ GR+MFD M S+ SW T++SG + + + A
Sbjct: 365 -KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEA 403
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 14/164 (8%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL N+ + LL + + A+ F + P+ ++ M+ L +A
Sbjct: 164 IKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAF 223
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIE--------------KGKEVHGLAVKAGF 110
L+ LM+ N D + V+ C E G++VH L +K GF
Sbjct: 224 RLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGF 283
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D+ + ++L+D+Y K G++D +F M SVVSW MI+G
Sbjct: 284 ESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAG 327
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R G ND + L+D+ S G D A VF + + TWN MI +G +
Sbjct: 545 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDE 604
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
A+LLY MI +G +PD TF V+ AC S ++ G ++ + + + G + + ++
Sbjct: 605 AVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCII 664
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
D + G + + DKM + + W ++S D+ A
Sbjct: 665 DSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLA 708
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ CI A GK +H +++ S D F+ + L++ Y KC +D R++FD+M R
Sbjct: 11 LLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRD 70
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ +W ++ + +L+ A
Sbjct: 71 IYTWNAILGAYCKASELEDA 90
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L L+ + S GK + A +F +I + WN M+ L+++ +A + M
Sbjct: 424 DIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMR 483
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G P +F++ V+ C ++ +G++VH + G+ D FV S L+D+Y KCGDVD
Sbjct: 484 EKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVD 543
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R +FD M ++ V+W MI G A +G D A
Sbjct: 544 AARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA 576
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 84/156 (53%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q++ +G D++ +L C G + +F + P + +WN ++ + + +
Sbjct: 312 LQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENH 371
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A+ L+ M PD+ T ++ + + +E G++VH ++ KA F D+++ S L
Sbjct: 372 KEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGL 431
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+ +Y KCG V+ +++FD++ +V W +M++GL+
Sbjct: 432 IGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLS 467
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 35/160 (21%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++G +D L LLD+ + G D A ++F + V +WN+MI S +A+
Sbjct: 250 IKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAI 309
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M +GF PD+ T+ ++ ACI
Sbjct: 310 EYLQRMQYHGFEPDEITYVNMLVACI---------------------------------- 335
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K GD++ GR+MFD M S+ SW T++SG + + + A
Sbjct: 336 -KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEA 374
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 14/164 (8%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL N+ + LL + + A+ F + P+ ++ M+ L +A
Sbjct: 135 IKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAF 194
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIE--------------KGKEVHGLAVKAGF 110
L+ LM+ N D + V+ C E G++VH L +K GF
Sbjct: 195 RLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGF 254
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
D+ + ++L+D+Y K G++D +F M SVVSW MI+G
Sbjct: 255 ESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAG 298
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R G ND + L+D+ S G D A VF + + TWN MI +G +
Sbjct: 516 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDE 575
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
A+LLY MI +G +PD TF V+ AC S ++ G ++ + + + G + + ++
Sbjct: 576 AVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCII 635
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
D + G + + DKM + + W ++S D+ A
Sbjct: 636 DSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLA 679
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R LS+D L +L++ + D + +F Q+ ++TWN ++ A A
Sbjct: 31 MLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDA 90
Query: 64 LLLYNLMICNGFRPDK--FTFPFVIKA------CIASLAIEKGKEVHGLAVKAGFSRDMF 115
+L+ M P++ ++ +I A C A + +E G+ HG+++K G +++
Sbjct: 91 HVLFAEM------PERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIY 144
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V + L+ +Y KC + + F + + VS+T M+ GLA S ++ A
Sbjct: 145 VGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEA 193
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ CI A GK +H +++ S D F+ + L++ Y KC +D R++FD+M R
Sbjct: 11 LLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRD 70
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ +W ++ + +L+ A
Sbjct: 71 IYTWNAILGAYCKASELEDA 90
>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ +D + L+D+ S G + A VF ++ WN +I + G S +AL
Sbjct: 103 LKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEAL 162
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y M +G + D FTF +++ C ++E K+ H ++ GF D+ + L+D Y
Sbjct: 163 DMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFY 222
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G ++ R +FDKM ++V+SW +I G G
Sbjct: 223 SKWGRIEDARHVFDKMASKNVISWNALIGGYGNHG 257
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G DQ + ++L + G A +F ++ ++ +WN +I L G ++A
Sbjct: 1 MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M FTF +I+A I G+++H +K G D+FV L+D+
Sbjct: 61 FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ R +F++M ++ V W T+I+G A G + A
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEA 161
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR+G +D + L+D S +G+ + A VF ++ +V +WN +I G +A
Sbjct: 203 LIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEA 262
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ L+ MI P+ TF V+ AC S E+G E+
Sbjct: 263 VELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEI 300
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 91/156 (58%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++++GL+++ + ++D+ + G+ ++++ +F ++ + TWN +I G +A
Sbjct: 364 VLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERA 423
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ + +P + T+ V++A + A+E G ++H L +K +++D V ++L+D+
Sbjct: 424 MNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDM 483
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ R FDKM R VSW MI G + G
Sbjct: 484 YAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHG 519
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 85/146 (58%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL+L + G+ A +F ++ + W+LMI S +AL L+ M P+
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FTF V++AC +S++++ GK++H +K G + ++FV + +MD+Y KCG+++ K+F+
Sbjct: 338 NFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFE 397
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ R+ V+W T+I G GD + A
Sbjct: 398 ELPDRNDVTWNTIIVGYVQLGDGERA 423
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G D + L+D S G D A VF I C + +W M+ + ++
Sbjct: 162 VYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEES 221
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N M G++P+ FT +K+C+ A GK VHG A+K + D+FV L++L
Sbjct: 222 LQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLEL 281
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y K G++ +++F++M ++ W+ MI+ A S
Sbjct: 282 YAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQS 316
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ + D ++ L+D+ + G+ + A L F ++ +WN MI ++ G S++AL
Sbjct: 466 IKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEAL 525
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
L+++M +P+K TF V+ AC + + KG+
Sbjct: 526 NLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQ 560
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G S D LL+ A +F ++ + ++ + + + D QA
Sbjct: 61 ILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQA 120
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + G + F F ++K ++ +H K G D FV + L+D
Sbjct: 121 LHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDA 180
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y G+VD R +FD + + +VSWT M++ A +
Sbjct: 181 YSVRGNVDVARHVFDDICCKDMVSWTGMVACYAEN 215
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
GK +H +K G S D+F Q+ L++ Y++ + K+FD+M + +S+ T+ G +
Sbjct: 54 GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113
Query: 158 SGDLDAA 164
A
Sbjct: 114 DHQFHQA 120
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G +D + L+D+ + +TD+++ VF + WN ++ +GS +AL
Sbjct: 198 RNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALG 257
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M+ G RP TF +I C ++ GK++H + GF ++F+ S+L+D+Y
Sbjct: 258 IFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYC 317
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG++ +FDKM VVSWT MI G A G
Sbjct: 318 KCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHG 351
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 5 IRYGLSNDQLLVRKLLDL-----CSFYGKTDHALL--------------VFSQIRCPHVF 45
IR G D+ LL+L CS+ T A++ VF ++ V
Sbjct: 77 IRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVV 136
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN ++ +G +AL M GFRPD FT V+ +++G EVHG A
Sbjct: 137 SWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFA 196
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ GF D+FV S+L+D+Y C D K+FD + VR + W ++++G A +G ++ A
Sbjct: 197 FRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEA 255
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G ++ + L+D+ G+ A +F ++ P V +W MI + G + +A
Sbjct: 297 VICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREA 356
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L+L+ M +P+ TF V+ AC + ++KG K ++ G + + L D
Sbjct: 357 LVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALAD 416
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ G++D KM+++ S W+T++
Sbjct: 417 TLGRAGELDEAYNFISKMQIKPTASVWSTLL 447
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF--TFPFVIKACIASLAIEKGKEVHGL 104
W IRA +G A+ L+ M + + P +K+C A G +H L
Sbjct: 16 WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75
Query: 105 AVKAGFSRDMFVQSTLMDLYLK--CG----------DVDGG-------RKMFDKMRVRSV 145
A+++G D F + L++LY K C DV G RK+FD+M R V
Sbjct: 76 AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135
Query: 146 VSWTTMISGLAASG 159
VSW T++ G A G
Sbjct: 136 VSWNTLVLGCAEEG 149
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++YG + + L+D+ + G D A L F + +WN +I G AL
Sbjct: 216 LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHAL 275
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L M F+P FT+ V AC + A+E+GK VH +K+G F+ +TL+D+Y
Sbjct: 276 HLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMY 335
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G +D +++FD++ VVSW TM++G A G
Sbjct: 336 AKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 83/156 (53%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L N +L ++++ + G D A +F ++ + TW +I + + ALLL+
Sbjct: 119 LDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFP 178
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ G +P+ FT ++KA + ++ G ++H +K G+ ++V S L+D+Y +CG
Sbjct: 179 QMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG 238
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D + FD M +S VSW +ISG A G+ + A
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHA 274
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL + LLD+ + G D A VF ++ P V +WN M+ G +
Sbjct: 316 MIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKET 375
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M+ G P++ +F V+ AC S +++G L K D+ T +DL
Sbjct: 376 LDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDL 435
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ G +D + +M + + W ++
Sbjct: 436 LGRVGLLDRAERFIREMPIEPTAAVWGALL 465
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A +F ++ P +N +IRAL+ + L+AL LY+ M+ +G +PD T+PFVIKAC
Sbjct: 118 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 177
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
S G VH VK+GF D ++ S+L+ LY D+ +++F+ R VVSW
Sbjct: 178 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 237
Query: 151 MISGLAASGDLDAA 164
MI G ++ A
Sbjct: 238 MIDGYVKHVEMGHA 251
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 72/134 (53%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
HA +VF ++ C V +WN MI I G +AL L++ M G +P + T ++ AC
Sbjct: 250 HARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACA 309
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
A++KG +H + V + L+D+Y KCG + ++F+ M + V++W T
Sbjct: 310 HLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNT 369
Query: 151 MISGLAASGDLDAA 164
+I+G+A G++ A
Sbjct: 370 IIAGMAIHGNVKEA 383
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + GK A VF+ + V WN +I + I G+ +A L+ M G P+
Sbjct: 339 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPN 398
Query: 79 KFTFPFVIKACIASLAIEKGKEV 101
TF ++ AC + +++G+++
Sbjct: 399 DITFVAILSACSHAGMVDEGQKL 421
>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
Length = 643
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+++ S G A VF + ++ +WN++I + DG +AL ++ M G +PD
Sbjct: 357 LINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPD 416
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
KFTF V+ AC AS A+ +GK +H L +G RD + + L++LY KCG ++ R +F
Sbjct: 417 KFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFL 476
Query: 139 KMRV-RSVVSWTTMISGLAASGDLD 162
M+ R++V+W +M++ G L+
Sbjct: 477 DMKSRRNLVTWNSMLAAACTKGGLE 501
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I R G D+ L L+ G A VF +I+ ++F+W +M+ A +G +
Sbjct: 37 EIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGRE 96
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ + G D T +KAC + +E+G+ +H A G+ ++ V + L+
Sbjct: 97 ALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIHASARSLGYESEIIVATALVS 156
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG ++ + +F + R+ VSW M++ A +G + A
Sbjct: 157 MYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEA 198
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK H A VF+ + + +WN M+ A +G +A+ LY LM G +PD
Sbjct: 154 LVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPD 213
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF V+ E G +H +++GF + + + L+ +Y G VD R +FD
Sbjct: 214 ATTFVSVLDGWKGEG--EHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFD 271
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+ ++VVSW M++ A +G
Sbjct: 272 GIAEKTVVSWNAMLTAYAQNG 292
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G ++ L L+ + G+ D A VF I V +WN M+ A +G +
Sbjct: 237 QVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGK 296
Query: 63 ALLLY---NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
A+ L+ + M P+ TF ++ AC A+ +E G+++H G + V
Sbjct: 297 AVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGA 356
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
L+++Y +CG++ + +FD + +++VSW +I A GD
Sbjct: 357 LINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGD 397
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ C ++ + K+ + GF D ++ + L+ Y KCG V R++FD+++ R+
Sbjct: 18 ILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRN 77
Query: 145 VVSWTTMISGLAASG 159
+ SWT M+ A +G
Sbjct: 78 IFSWTIMLGAYADNG 92
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQ 62
I GL D+ + L++L G + A VF ++ ++ TWN M+ A G
Sbjct: 443 IAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLED 502
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLM 121
+ + ++M G PD+ TF V+ AC +I++G ++ V G + + ++
Sbjct: 503 CVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVV 562
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSV-VSWTTMI 152
D+ + G ++ +++ ++M ++ V+W T++
Sbjct: 563 DILGRVGRLEEAQEVLNRMPFQANDVAWMTLL 594
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 9 LSNDQLLVRKLL---DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
L ND ++ +L+ L F + LVF P +WN++IR S ++++
Sbjct: 38 LHNDTHILSQLVYFFSLSPFKNLSHARKLVFHFSNNPSPISWNILIRGYASSDSPIESIW 97
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M NG +P+K T+PF+ K+C +L + +GK+VH VK G D++V + +++ Y
Sbjct: 98 VFKKMRENGVKPNKLTYPFIFKSCAMALVLCEGKQVHADLVKFGLDSDVYVCNNMINFYG 157
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
C + RK+FD+M VR++VSW ++++
Sbjct: 158 CCKKIVYARKVFDEMCVRTIVSWNSVMTA 186
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYG---KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++++GL +D + +++ FYG K +A VF ++ + +WN ++ A +
Sbjct: 137 LVKFGLDSDVYVCNNMIN---FYGCCKKIVYARKVFDEMCVRTIVSWNSVMTACVENVWL 193
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ + M F PD+ + ++ C + G+ VH + G + + + L
Sbjct: 194 SDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGMVLSVHLGTAL 253
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y K G + R +F++M R+V +W+ MI GLA G + A
Sbjct: 254 VDMYGKSGALGYARVVFERMEKRNVWTWSAMIMGLAQHGFAEEA 297
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM---ICNGF 75
L+D+ G +A +VF ++ +V+TW+ MI L G + +AL+L+++M N
Sbjct: 253 LVDMYGKSGALGYARVVFERMEKRNVWTWSAMIMGLAQHGFAEEALVLFDMMNDKKSNNI 312
Query: 76 RPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
P+ T+ V+ AC + +++G + + G M ++D+ + G +
Sbjct: 313 SPNYVTYLGVLCACSHAGMVDEGFRYFRDMEFVHGIKPMMVHYGAMVDVLGRAGHLGEAY 372
Query: 135 KMFDKMR-VRSVVSWTTMISG 154
+ M + W T++S
Sbjct: 373 RFIQSMPFAPDPIVWRTLLSA 393
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
Query: 25 FYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
FY + H A +F ++ V +W MI A G +AL ++++M+ G+ P++FT
Sbjct: 225 FYAQCGHIASASTMFDKMASRDVISWTTMITAYVQHGRGDKALEMFSVMVSEGYYPNEFT 284
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
++KAC A GK++HG VK + D+ V S L+ +Y + G+V + +FDKM
Sbjct: 285 VCSILKACSDEKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVFDAQAVFDKMA 344
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
R+ ++WT+MISG A SG + A
Sbjct: 345 RRNTITWTSMISGYAQSGHGEKA 367
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 76/133 (57%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ +A + + +W MI G + +AL + M+ +G +P+ +T+ +
Sbjct: 432 GEYTYAARILKDMPDRDAISWTAMISGYNSVGHNAEALKSLDDMLWDGVKPNTYTYSSAL 491
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A++ G+ +HG+ K ++FV S+L+D+Y++CG+VD R++FD M ++V
Sbjct: 492 KACAKLEALQDGRRIHGVVNKTPAFLNVFVGSSLIDMYMRCGNVDDARRVFDAMPEHNLV 551
Query: 147 SWTTMISGLAASG 159
+W +I+G A +G
Sbjct: 552 TWKVIITGFAQNG 564
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+ L++ + + + A VF ++ V +W +I G+ + + L+ M+ +
Sbjct: 117 FVANNLINAYARFHEISDARKVFDEMPDKSVVSWTAIINGYQKSGNYNEVVRLFLDMVGS 176
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G R + TF ++K+C + G++VH VK G+S ++ + S ++ Y +CG +
Sbjct: 177 GVRGNSLTFVCLLKSCGEQCNTKLGRQVHCCVVKGGWS-NVIMDSAVVHFYAQCGHIASA 235
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
MFDKM R V+SWTTMI+ G D A
Sbjct: 236 STMFDKMASRDVISWTTMITAYVQHGRGDKA 266
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 11/169 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLD--------LCSFY---GKTDHALLVFSQIRCPHVFTWNLM 50
+K R+G +V+KL L + Y G+ A VF ++ + TW M
Sbjct: 295 EKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTSM 354
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G +A+LL+ M + T ++ AC + ++ GKE+H +K
Sbjct: 355 ISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKNSI 414
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ + STL+ Y KCG+ ++ M R +SWT MISG + G
Sbjct: 415 QENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISGYNSVG 463
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD ++++C +++ + VH ++V++ MFV + L++ Y + ++ RK+
Sbjct: 82 PDAEALASLLRSC---GSVDDVRRVHAISVRSPDGPGMFVANNLINAYARFHEISDARKV 138
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLD 162
FD+M +SVVSWT +I+G SG+ +
Sbjct: 139 FDEMPDKSVVSWTAIINGYQKSGNYN 164
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 85/154 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ S + + LLD+ S G + A VF ++ + +W +I A +G A+
Sbjct: 323 VKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAI 382
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G RPD +T ++ AC S +++KG++VH +K G ++ V + L+++Y
Sbjct: 383 GLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMY 442
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG V+ R +F K+ V+ +VSW TMI G + +
Sbjct: 443 AKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 476
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G+ ++ + L+++ + G + A LVFS+I + +WN MI + + +A
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ L + F+PD T V+ AC A++KG+E+HG ++ G+ D+ V L+D+
Sbjct: 483 LELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 541
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + + +FD + + ++SWT MI+G G
Sbjct: 542 YAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 577
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++ +V L+ +G + A +F ++ P V +WN MI ++G S
Sbjct: 221 VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNG 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M+ G D T V+ AC + G+ +HG VKA FS ++ +TL+D+
Sbjct: 281 LEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDM 340
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+++G ++F KM ++VSWT++I+ G
Sbjct: 341 YSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREG 376
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G+S D+ L KL+ + G +F +I VF WNL++ G+ ++
Sbjct: 120 IISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRES 179
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G + +TF V+K C A+L +++ K VHG +K GF + V ++L+
Sbjct: 180 VSLFKKMQKLGVVGNCYTFTCVLK-CFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 238
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G V+ +FD++ VVSW +MI+G +G
Sbjct: 239 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 275
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V++ C ++E GK VH + + G S D + + L+ +Y+ CGD+ GRK+FDK+
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159
Query: 145 VVSWTTMISGLAASGDL 161
V W ++S A G+
Sbjct: 160 VFLWNLLMSEYAKIGNF 176
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +D + L+D+ + G A L+F I + +W +MI + G +A
Sbjct: 523 ILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEA 582
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ +N M G PD+ +F ++ AC S + +G K + + + G + + ++D
Sbjct: 583 ISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVD 642
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G++ K + M ++ + W ++SG D+ A
Sbjct: 643 LLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 685
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ D V L+D + GK A +F + +V +W MI + +A
Sbjct: 168 VLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGYMQNSFDREA 227
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G RPD F ++ +C + A+E G++VH ++K D+F+Q+ L+D+
Sbjct: 228 VKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDM 287
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ RK+FD M +R+VVS+ +I G + L A
Sbjct: 288 YAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEA 328
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + + L+DL + G D A LVF + TW +I A G S +L
Sbjct: 68 VKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACVKRGRSEVSL 127
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M PD + V+ AC ++ GK++HG ++ G D+ + L+D Y
Sbjct: 128 QLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFY 187
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G V RK+FD M R+V+SWT MI+G
Sbjct: 188 TKSGKVQSARKLFDGMADRNVISWTAMIAG 217
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
++ +W+ ++ + G S +ALL++ + C P+++ VI AC+ + K++
Sbjct: 5 NLISWSSVVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACV-QVGGSIDKQM 63
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
HG AVK+GF R+++V ++L+DLY K G++D R +FD + +S V+WTT+I+ G
Sbjct: 64 HGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACVKRG 121
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ + +D L L+D+ + G + A VF + +V ++N +I + +A+
Sbjct: 270 IKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAM 329
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M P TF ++ A A+E GK++H L K G S ++F S L+D Y
Sbjct: 330 NLFREMRHGMLSPSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDFY 389
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
KC + R +FDKM + +V W M+ G
Sbjct: 390 SKCSCLMDARLVFDKMTEKDIVVWNAMLFG 419
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I ++G+S + L+D FY K A LVF ++ + WN M+ T +
Sbjct: 370 ITKFGISMEIFAGSALID---FYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGYTQQLEN 426
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL LY + + +P+ TF + A +++ G++ H +K G F ++L
Sbjct: 427 EEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHIIKTGLDSHPFTTNSL 486
Query: 121 MDLYLKCGDVDGGRKMFDKMR 141
+D+Y KCG ++ RK F ++
Sbjct: 487 IDMYAKCGSLEDARKAFGHVK 507
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++Y +D + LLD+ + G+ D A+ VF Q+ + +WN +I G L
Sbjct: 192 VKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTL 251
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M NGF FT+ V A A+E+GK VH +K+G FV +T++D+Y
Sbjct: 252 LMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMY 311
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + RK+FD++ + VV+W +M++ A G
Sbjct: 312 AKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYG 346
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + + +W +I + +AL L M+ F+P+ FTF ++
Sbjct: 113 GAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLL 172
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KA AS + G+++H L VK + D++V S L+D+Y +CG +D +FD++ ++ V
Sbjct: 173 KAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGV 232
Query: 147 SWTTMISGLAASGD 160
SW +I+G A GD
Sbjct: 233 SWNALIAGFARKGD 246
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+I AC +++ + +H + F+ +F+ ++L+ LY KCG V R++FD M R
Sbjct: 70 LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ SWT++I+G A + D A
Sbjct: 130 MCSWTSLIAGYAQNDMPDEA 149
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + +LD+ + G A VF ++ V TWN M+ A G +A
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G ++ TF ++ AC +++GK+ + + ++ T++DL
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDL 411
Query: 124 YLKCG 128
+ G
Sbjct: 412 LGRAG 416
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ L D + KL+ S A+ VF+ + P+V +N +IRA + S
Sbjct: 43 QVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTS--H 100
Query: 63 ALLLYNL---MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L +N M NG PD FT+PF++KAC ++ + +H K GF D+FV ++
Sbjct: 101 PSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNS 160
Query: 120 LMDLYLKCGD--VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D Y +CG +DG +F M+ R VV+W +MI GL G+L+ A
Sbjct: 161 LIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGA 207
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 27 GKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G D A ++F RCP +V W +I G +A LY M G RPD
Sbjct: 264 GDMDMARVLFD--RCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLIS 321
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ AC S + GK +H + F V + +D+Y KCG +D +F M +
Sbjct: 322 ILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKK 381
Query: 145 -VVSWTTMISGLAASGDLDAA 164
VVSW +MI G A G + A
Sbjct: 382 DVVSWNSMIQGFAMHGHGEKA 402
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 41/163 (25%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT--DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ ++G D + L+D S G D A+ +F ++ V TWN MI L G
Sbjct: 146 VEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELE 205
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L++ M P+ RDM +T++
Sbjct: 206 GACKLFDEM------PE---------------------------------RDMVSWNTML 226
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D Y K G++D ++F++M R++VSW+TM+ G + GD+D A
Sbjct: 227 DGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMA 269
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ +D+ + G D A VFS + V +WN MI+ + G +AL L++ M+
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPE 412
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKE 100
GF PD +TF ++ AC + + +G++
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRK 439
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
Q++ +++L G+ A VF ++ ++ +WN +I A +G A+ +++LM
Sbjct: 161 QVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDL 220
Query: 73 NG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+G RP+ TF V+ AC L + +GK H ++ GF +FV ++L+++Y KCG VD
Sbjct: 221 DGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVD 280
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R +F+KM R+VVSWT MI A G + AA
Sbjct: 281 RARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAA 313
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++IIR G + + L+++ G D A LVF ++ +V +W +MI A G
Sbjct: 252 ERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIR 311
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A LY M C P+ TF V+ +C+ + + +++H V +GF D +Q L+
Sbjct: 312 AAFDLYKRMDC---EPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLV 368
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS--VVSWTTMISGLAASGD 160
+Y KCG VD +F+ ++ RS V+W MISGLA G+
Sbjct: 369 TMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGE 409
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q I+ G ++ + L+ + + G + AL VF + P+VF+W +I A +G
Sbjct: 50 QHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLR 109
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L L+ M +G +PD F F V+ AC ++ A+ +GK +H AV AG + V + ++
Sbjct: 110 EVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQV-VGNAIV 168
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+LY KCG V + +F+++ R++VSW +I+ A +G
Sbjct: 169 NLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNG 206
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 3/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
++ G +D +L L+ + G D A +F + R + TWN MI L G S
Sbjct: 352 MVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESK 411
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
QAL + M G RP+ T+ ++AC + + +G+++H + + + + ++
Sbjct: 412 QALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENI-HEANLSNAVI 470
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++Y KCG +D F KM R VVSW TMI+ A G
Sbjct: 471 NMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHG 508
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Query: 24 SFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF 80
+ YGK D A+ F+++ V +WN MI GS QAL + M G+ D+
Sbjct: 471 NMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRA 530
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T+ I AC + ++ GK +H + A +D V + L+ +Y +CG + + +F
Sbjct: 531 TYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFW 590
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ R++V+W+ +I+ A G + A
Sbjct: 591 RSHSRNLVTWSNLIAACAQHGRENEA 616
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ +++ C + GK VH + +G + ++Q+ L+ +Y KCG ++ ++F+ +
Sbjct: 29 YASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLP 88
Query: 142 VRSVVSWTTMISGLAASGDL 161
+V SWT +I+ A G L
Sbjct: 89 NPNVFSWTALITAYAKEGHL 108
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L D + L+ + + G A VF + ++ TW+ +I A G +AL L+
Sbjct: 562 LEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFR 621
Query: 69 LMICNGFRPDKFTFPFVIKAC 89
M G +PD TF ++ AC
Sbjct: 622 EMQLQGTKPDALTFSTLVAAC 642
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ + G A LVFS++R + +WN +I + + + +AL L+NL++
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 72 CNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
F PD+ T V+ AC + A +KG+E+HG ++ G+ D V ++L+D+Y KCG +
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+FD + + +VSWT MI+G G
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHG 579
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY K D A VF ++ V +WN +I +G + + L ++ M+ +G D
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V C S I G+ VH + VKA FSR+ +TL+D+Y KCGD+D + +F
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 355
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+M RSVVS+T+MI+G A G
Sbjct: 356 EMSDRSVVSYTSMIAGYAREG 376
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ S + LLD+ S G D A VF ++ V ++ MI +G + +A+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD +T V+ C +++GK VH + D+FV + LMD+Y
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG + +F +MRV+ ++SW T+I G + +
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 476
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 80/152 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D L KL + + G A VF +++ WN+++ L G ++ L+
Sbjct: 124 GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G D +TF V K+ + ++ G+++HG +K+GF V ++L+ YLK
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VD RK+FD+M R V+SW ++I+G ++G
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +R G+ A+ L L + + D T V++ C S +++ GKEV
Sbjct: 65 NTQLRRFCESGNLENAVKL--LCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GF D + S L +Y CGD+ ++FD++++ + W +++ LA SGD +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGS 179
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +D+ + L+D+ + G A ++F I + +W +MI + G +A
Sbjct: 525 IMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEA 584
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ L+N M G D+ +F ++ AC S +++G
Sbjct: 585 IALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + L L+++ S G+ DHAL +F + ++ +W MI L+ + +A
Sbjct: 31 LICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEA 90
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G P +F F I+AC + +IE GK++H LA+K G ++FV S L D+
Sbjct: 91 IRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDM 150
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + K+F++M + VSWT MI G + G+ + A
Sbjct: 151 YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFS-QIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D + L D+ S G + A VF C +V ++ +I +
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L ++ + G P++FTF +IKAC A+E+G ++H +K F D FV S L+D
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG ++ + FD++ + ++W +++S G
Sbjct: 353 MYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHG 389
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+++G+ ++ + L D+ S G A VF ++ C +W MI + G +AL
Sbjct: 133 LKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEAL 192
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L + MI D+ + AC A A + G+ VH VK GF D+FV + L D+Y
Sbjct: 193 LAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMY 252
Query: 125 LKCGDVDGGRKMFD-KMRVRSVVSWTTMISGLAASGDLD 162
K GD++ +F R+VVS+T +I G + ++
Sbjct: 253 SKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIE 291
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D VI+ + + +GK++H L + AG++ F+ + L+++Y KCG++D K+F
Sbjct: 4 DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D M R++VSWT MISGL+ + A
Sbjct: 64 DTMPQRNLVSWTAMISGLSQNSKFSEA 90
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/160 (18%), Positives = 66/160 (41%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ D + L+D+ G + A+ F +I P WN ++ G
Sbjct: 334 QVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKD 393
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
A+ ++ M+ G +P+ TF ++ C + +E+G + + + G S ++
Sbjct: 394 AIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVI 453
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGD 160
DL + G + ++ ++M + W + + GD
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGD 493
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 84/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++YG + + LLD+ + + A ++F+ + +V +WN +I G +
Sbjct: 233 LKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVM 292
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ GF P FT+ V AC +S ++E+GK VH +K+G ++ +TL+D+Y
Sbjct: 293 RLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMY 352
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + +K+F ++ + +VSW ++ISG A G
Sbjct: 353 AKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHG 387
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 86/152 (56%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+D +L+ +L++ + G + A +F ++ + +W ++I + G + +AL L+
Sbjct: 136 FEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFP 195
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ GF+P++FT ++KA + G+++H ++K G+ ++ V S+L+D+Y +
Sbjct: 196 KMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWA 255
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+ + +F+ + ++VVSW +I+G A G+
Sbjct: 256 HMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%)
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + +L+ C P++ + ++ C +++G+ +H + F D+ + + ++++
Sbjct: 90 LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ + +FDKM + +VSWT +ISG + SG A
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEA 190
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + L+D+ + G A VF ++ + +WN +I G +A
Sbjct: 333 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 392
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ +P++ TF V+ AC S +++G+ L K + T++DL
Sbjct: 393 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDL 452
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G ++ K ++M ++ + W ++ ++D
Sbjct: 453 LGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMD 492
>gi|2832657|emb|CAA16732.1| putative protein [Arabidopsis thaliana]
gi|7268645|emb|CAB78854.1| putative protein [Arabidopsis thaliana]
Length = 565
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+++ G+ N L+V L FY G+ AL F + V +W +I A + G
Sbjct: 190 NMVKVGVGN--LIVES--SLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGH 245
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++A+ ++ M+ + F P++FT ++KAC A+ G++VH L VK D+FV ++
Sbjct: 246 GIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTS 305
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LMD+Y KCG++ RK+FD M R+ V+WT++I+ A G
Sbjct: 306 LMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREG 345
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
SN L++++ + G +A VF + + TW MI G +A L+
Sbjct: 95 SNGMRLIKRIHAMALKLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFED 154
Query: 70 MICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+ +G R ++ F ++ C E G++VHG VK G ++ V+S+L+ Y +CG
Sbjct: 155 YVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCG 213
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ + FD M + V+SWT +IS + G
Sbjct: 214 ELTSALRAFDMMEEKDVISWTAVISACSRKG 244
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + + + L+ L G++ A V Q+ V +W MI + G +
Sbjct: 374 QIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESE 433
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL MI G P+ FT+ +KAC S ++ G+ +H +A K ++FV S L+
Sbjct: 434 ALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIH 493
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ M +++VSW MI G A +G
Sbjct: 494 I----------------MPEKNLVSWKAMIMGYARNG 514
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 2 QKIIRYGLSNDQLLVRK-----------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G L+V++ L+D+ + G+ VF + + TW +
Sbjct: 278 EKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSI 337
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I A +G +A+ L+ +M + T E+H +K
Sbjct: 338 IAAHAREGFGEEAISLFRIMKRRHLIANNLTV-----------------ELHAQIIKNSI 380
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++++ STL+ LY KCG+ + ++ R VVSWT MISG ++ G A
Sbjct: 381 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 434
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ LK GD+ RK+FD M ++ V+WT MI G G D A
Sbjct: 107 MALKLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEA 148
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL + +GK H+L +F Q P +F + I +I+G QA LLY ++ + P
Sbjct: 67 KLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINP 126
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++FTF ++K+C + + GK +H +K G D +V + L+D+Y K GDV +K+F
Sbjct: 127 NEFTFSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVF 182
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D+M RS+VS T MI+ A G+++AA
Sbjct: 183 DRMPERSLVSSTAMITCYAKQGNVEAA 209
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G + A +F ++ + +WN+MI + G AL+L+ ++ +G +PD+ T
Sbjct: 204 GNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAA 263
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A+E G+ +H + ++ V + L+D+Y KCG ++ +F+ + +
Sbjct: 264 LSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDI 323
Query: 146 VSWTTMISGLAASG 159
V+W MI+G A G
Sbjct: 324 VAWNAMITGYAMHG 337
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRP 77
L+D+ S G + A+LVF+ + WN MI + G S AL L++ M G +P
Sbjct: 298 LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQP 357
Query: 78 DKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
TF ++AC + + +G ++ + + G + L+ L + G + ++
Sbjct: 358 TDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEI 417
Query: 137 FDKMRVRS-VVSWTTMISGLAASGDL 161
M + + V W++++ G+
Sbjct: 418 IKNMNMEADSVLWSSVLGSCKLHGEF 443
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF +I P +N +IRA + G A+ LY M+ P+K+TFPFV+KAC A
Sbjct: 55 VFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALAD 114
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ G+ +H A G D+FV + L+DLY++C +F KM +R VV+W M++G
Sbjct: 115 LCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAG 174
Query: 155 LAASG 159
A G
Sbjct: 175 YANHG 179
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+ D LL + + G + A ++F +I ++ ++ +G + +A
Sbjct: 332 LAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEA 391
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ M +PD T +I AC A++ G+ HG + G + + + ++L+D+
Sbjct: 392 FLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDM 451
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D R++FDKM R +VSW TMI+G G
Sbjct: 452 YAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHG 487
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 8 GLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
GL D + L+DL C+ +G A VF+++ V WN M+ G A+
Sbjct: 129 GLHTDLFVSTALIDLYIRCARFGP---AANVFAKMPMRDVVAWNAMLAGYANHGMYHHAI 185
Query: 65 L-LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD---MFVQSTL 120
L ++ G RP+ T ++ A+ +G VH ++A ++ + + + L
Sbjct: 186 AHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTAL 245
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+D+Y KC + ++F M VR+ V+W+ +I G
Sbjct: 246 LDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGF 280
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 10 SNDQLLV-RKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ +Q+L+ LLD+ Y K H A VF + + TW+ +I + +A
Sbjct: 235 NEEQVLIGTALLDM---YAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFN 291
Query: 66 LYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ G + ++ C + + G ++H L K+G D+ ++L+ +Y
Sbjct: 292 LFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMY 351
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G ++ +FD++ ++ +S+ ++SG +G + A
Sbjct: 352 AKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEA 391
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR GL+ + + L+D+ + G+ D + VF ++ + +WN MI I G +A
Sbjct: 434 IIR-GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L+ M GF PD TF +I AC S + +GK + K G M ++D
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 552
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVV 146
L + G +D + M +++ V
Sbjct: 553 LLARGGFLDEAYQFIQSMPLKADV 576
>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 607
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ G L+ L+D+ + G D+A VF+Q+ V +W ++ + +GS A
Sbjct: 348 IIKTGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGYSYNGSYEDA 407
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M G PD+ V+ AC E G++VH +K+G + + ++L+ +
Sbjct: 408 IKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVHATILKSGLCSSLSIDNSLVTM 467
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ +FD M++R V+SWT +I G A +G
Sbjct: 468 YAKCGGIEDANYVFDSMQIRDVISWTALIVGYAQNG 503
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQA 63
I+ L + +V L+DL + A +F + + TW M+ + +G +A
Sbjct: 146 IKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRA 205
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G ++FTFP ++ AC A G +VHG V++GF ++FVQS L+D+
Sbjct: 206 IKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQSALVDM 265
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC D++ ++ + M V VVSW +MI G G
Sbjct: 266 YAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREG 301
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G + + L+D+ + + A V + V +WN MI +G +A
Sbjct: 247 IVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEA 306
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N M + D +T+P V+ + + I+ K H L +K GF V + L+D+
Sbjct: 307 LSLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIKTGFGAYTLVNNALVDM 366
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G++D +F++M + VVSWT++++G + +G + A
Sbjct: 367 YAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGYSYNGSYEDA 407
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 32/185 (17%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG--------- 58
G S + + L+ S G+ D A +F ++ F+WN MI A G
Sbjct: 17 GFSYSAIKSNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANSGRLTDAKQLF 76
Query: 59 -----------SSL-----------QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96
SSL +A LY M G RP+ +T +++ C + ++
Sbjct: 77 CEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQ 136
Query: 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGL 155
KG+ +HG A+K ++FV ++L+DLY KC + +F+ + ++ +WT M++G
Sbjct: 137 KGERIHGYAIKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGY 196
Query: 156 AASGD 160
+ +GD
Sbjct: 197 SHNGD 201
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+ I+ + + +A + GFS + ++ K G +D R +FDK+ R SW TMI
Sbjct: 1 MEIKLTRHSYIIARQTGFSYSAIKSNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMI 60
Query: 153 SGLAASGDLDAA 164
+ A SG L A
Sbjct: 61 AAYANSGRLTDA 72
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ GL + + L+ + + G + A VF ++ V +W +I +G +
Sbjct: 449 ILKSGLCSSLSIDNSLVTMYAKCGGIEDANYVFDSMQIRDVISWTALIVGYAQNGRGKDS 508
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQ 117
L Y+ MI G +PD TF ++ AC + +E G+ + + G S F Q
Sbjct: 509 LHFYDQMIATGTKPDFITFIGLLFACSHTGLVEDGRRYFESMDKEYGASHKWFKQ 563
>gi|125606358|gb|EAZ45394.1| hypothetical protein OsJ_30043 [Oryza sativa Japonica Group]
Length = 494
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF- 75
L+D + +G + A L+F ++ +W MI + + +AL + M+ +
Sbjct: 142 NSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYI 201
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF V+ AC ++ + G+ VH A + GF+ ++V + L+D+Y KCGDV+G
Sbjct: 202 QPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANN 261
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD + + +VSW TM+ G A +G
Sbjct: 262 VFDAIHQKDLVSWNTMLFGFAING 285
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 17 RKLLDLCSFY------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
R L CS G + A +F ++ WN ++ + G++ Q L L+N M
Sbjct: 4 RNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQM 63
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+G D T ++ AC G +H + V++G++ V ++L+ Y K +
Sbjct: 64 WMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLL 123
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D ++F+ M+ R+ SW ++I A G ++ A
Sbjct: 124 DCAVQIFESMKTRTTASWNSLIDAHARFGYIEQA 157
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G ++ + L+D+ + G + A VF I + +WN M+ I+G +AL +Y
Sbjct: 235 GFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVY 294
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFVQSTL 120
+M + PD+ TF ++ AC S +E+G+ VHG+ K S +
Sbjct: 295 EIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEH------LSCV 348
Query: 121 MDLYLKCGDVDGGRKMFDK 139
+D+Y + G++ +M ++
Sbjct: 349 LDMYARSGNIAKAIEMMEQ 367
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+R G+ ++ L L+++ G A VF + V +WN MI GS
Sbjct: 455 EDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYE 514
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L+ M PD TF V+ C A+E GK++HG ++G D+ + + L+
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++Y++CG + R +F ++ R V+SWT MI G A G+
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I GL D L L+++ G A VF ++ V +W MI G ++
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M GFRP K TF ++K C +S +++GK+V + +G+ D V + L+
Sbjct: 617 AIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALIS 676
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G + R++FDKM R +VSW +I+G A +G
Sbjct: 677 AYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNG 713
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF ++ V +WN +I G +A L+ M GF P+K T+ ++ AC +
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+E GK++H +KAG+ RD VQ++L+ +Y KCGD+ R++F + R VVS+ TM
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200
Query: 152 I 152
+
Sbjct: 201 L 201
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL++D + L+ +C G D A F V +N +I AL G +++A
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAF 315
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y M +G ++ T+ ++ AC S A+E GK +H + G S D+ + + L+ +Y
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CGD+ R++F M R ++SW +I+G A D A
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S+D + L+ + + G A +F + + +WN +I +A+ LY
Sbjct: 360 GHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLY 419
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G +P + TF ++ AC S A GK +H +++G + + + LM++Y +C
Sbjct: 420 KQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC 479
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + + +F+ + R V+SW +MI+G A G + A
Sbjct: 480 GSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G D + LL + G A VF+ I V ++N M+ +
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKE 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M G PDK T+ ++ A +++GK +H L V+ G + D+ V + L+
Sbjct: 213 CLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVT 272
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ ++CGDVD ++ F R VV + +I+ LA G
Sbjct: 273 MCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHG 309
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ G D + L+ S G A VF ++ + +WN +I +G A
Sbjct: 659 ILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTA 718
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M P+KF+F ++ AC + A+E+GK VH VK D+ V + L+ +
Sbjct: 719 VEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISM 778
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +++FD + ++VV+W MI+ A G
Sbjct: 779 YAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHG 814
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 76 RP---DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
RP ++ T+ +++ C + + K +H V+A D+F+ + L+++Y+KC V
Sbjct: 21 RPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD 80
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
++F +M R V+SW ++IS A G
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQG 107
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ L D + L+ + + G A VF I +V TWN MI A G + +
Sbjct: 759 EIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASK 818
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL +N M G +PD TF ++ AC
Sbjct: 819 ALGFFNCMEKEGIKPDGSTFTSILSAC 845
>gi|15234984|ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g25270, chloroplastic; Flags: Precursor
gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana]
gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana]
gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
I Y L N+ + KL+ L + G + A VF ++ R F WN +I G
Sbjct: 118 IPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYE 177
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY M +G +PD+FTFP V+KAC +++ G+ +H VK GF D++V + L+
Sbjct: 178 DAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALV 237
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCGD+ R +FD + + VSW +M++G G L A
Sbjct: 238 VMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEA 280
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D ++ L+ + + G A VF I +WN M+ G +A
Sbjct: 221 LVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEA 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ LM+ NG PDK V+ L+ + G+++HG ++ G ++ V + L+ L
Sbjct: 281 LDIFRLMVQNGIEPDKVAISSVLARV---LSFKHGRQLHGWVIRRGMEWELSVANALIVL 337
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y K G + +FD+M R VSW +IS + + +
Sbjct: 338 YSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSN 374
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
F +++ C + AI+ G VH L ++ + S L+ LY CG + ++FD+M
Sbjct: 95 FASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMS 154
Query: 142 VR--SVVSWTTMISGLAASGDLDAA 164
R S +W ++ISG A G + A
Sbjct: 155 KRDSSPFAWNSLISGYAELGQYEDA 179
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G+ + + L+ L S G+ A +F Q+ +WN +I A + + + L+
Sbjct: 319 VIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLK- 377
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ M +PD TF V+ C + +E G+ + L K G M + +++
Sbjct: 378 --YFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVN 435
Query: 123 LYLKCGDVDGGRKM 136
LY + G ++ M
Sbjct: 436 LYGRAGMMEEAYSM 449
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++ + L+D S G A VF +I + +W MI + + +A
Sbjct: 72 VLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEA 131
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M GF+P+ FTF V+KAC+ + GK VH +K + RD++V L++L
Sbjct: 132 LEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLEL 191
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CGD D + F M V+ W+ MIS A SG + A
Sbjct: 192 YTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKA 232
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL+L + G D A F + V W+ MI G S +AL ++ M P+
Sbjct: 188 LLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPN 247
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+FTF V++A +++ K +HG A+KAG S D+FV + LM Y KCG ++ ++F+
Sbjct: 248 QFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFE 307
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ R+ VSW T+I GD + A
Sbjct: 308 ALSDRNDVSWNTIIVSYVQLGDGERA 333
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GLS D + L+ + G + ++ +F + + +WN +I + G +AL
Sbjct: 275 LKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERAL 334
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M+ + + T+ +++AC A+E G +VH L K + +D+ V + L+D+Y
Sbjct: 335 SLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMY 394
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG + R MFD + +R VSW +I G + G
Sbjct: 395 AKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHG 429
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%)
Query: 34 LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93
+VF ++ + ++ +I ++A L+ + G + F F V+K ++
Sbjct: 1 MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
E G+ VHG +K G+ + F+ + L+D Y G V R++FD++ + +VSWT MI+
Sbjct: 61 WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120
Query: 154 GLAAS 158
A +
Sbjct: 121 SYAEN 125
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A +F + +WN +I ++ G ++A+ ++NLM +PD
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPD 449
Query: 79 KFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF V+ AC + +++GK+ + G M + ++ L + G++D K
Sbjct: 450 ELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFI 509
Query: 138 DKMRVR-SVVSWTTMISGLAASGDLD 162
+ + SV+ W ++ D++
Sbjct: 510 EDIPFEPSVMIWRALLGACVIHNDVE 535
>gi|52076160|dbj|BAD46673.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 678
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF- 75
L+D + +G + A L+F ++ +W MI + + +AL + M+ +
Sbjct: 326 NSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYI 385
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF V+ AC ++ + G+ VH A + GF+ ++V + L+D+Y KCGDV+G
Sbjct: 386 QPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANN 445
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD + + +VSW TM+ G A +G
Sbjct: 446 VFDAIHQKDLVSWNTMLFGFAING 469
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 13 QLLVRKLLDLCSFY------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
++ R L CS G + A +F ++ WN ++ + G++ Q L L
Sbjct: 184 EMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLAL 243
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+N M +G D T ++ AC G +H + V++G++ V ++L+ Y K
Sbjct: 244 FNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTK 303
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D ++F+ M+ R+ SW ++I A G ++ A
Sbjct: 304 FSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQA 341
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G ++ + L+D+ + G + A VF I + +WN M+ I+G +AL +Y
Sbjct: 419 GFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVY 478
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFVQSTL 120
+M + PD+ TF ++ AC S +E+G+ VHG+ K S +
Sbjct: 479 EIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEH------LSCV 532
Query: 121 MDLYLKCGDVDGGRKMFDK 139
+D+Y + G++ +M ++
Sbjct: 533 LDMYARSGNIAKAIEMMEQ 551
>gi|297720781|ref|NP_001172752.1| Os01g0959600 [Oryza sativa Japonica Group]
gi|255674093|dbj|BAH91482.1| Os01g0959600 [Oryza sativa Japonica Group]
Length = 542
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMI----RALTIDGS 59
+I+ GL +D LV ++D+ + G A +F ++ P+V +N MI R T+ G
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297
Query: 60 SL--QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ +AL LY+ + G +P +FTF V++AC + +E GK++HG +K F D F+
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
S L+DLY G ++ G + F +V+WT M+SG
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSG 394
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+Y D + L+DL G + F + TW M+ + +
Sbjct: 344 QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEK 403
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLM 121
AL L++ + G +PD FT V+ AC ASLA+ + G+++ A K+GF R + ++ +
Sbjct: 404 ALSLFHESLGAGLKPDLFTISSVMNAC-ASLAVARAGEQIQCFATKSGFDRFTVMGNSCV 462
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y + GDVD + F +M VVSW+ +IS A G
Sbjct: 463 HMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHG 500
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
++NL+I A + +G + +L G D+F++ + AC + + G+ VH LA
Sbjct: 76 SFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALA 135
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ G S +FV ++L+ +Y KCG++ R++FD R VSW +++SG +G
Sbjct: 136 ILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAG 189
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GLS+ + L+ + S G+ A VF +WN ++ G+ + + ++
Sbjct: 139 GLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVF 198
Query: 68 NLMICNGFRPDKFTFPFVIKACIA--SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+M G + F VIK C ++ + VHG +KAG D+F+ S ++D+Y
Sbjct: 199 AMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYA 258
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K G + +F ++ +VV + TMI+G
Sbjct: 259 KKGALVEAAALFRSVQEPNVVMFNTMIAGF 288
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-PDKFTFPFVIKAC 89
+A VF+ R V TWN M+RA +AL Y M+ PD+FTFP ++K C
Sbjct: 30 YAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
L + GK +HG VK D+++++TL+++Y CGD+ R +F++M R+ V WT
Sbjct: 90 ALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149
Query: 150 TMISG 154
+MISG
Sbjct: 150 SMISG 154
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC-NGFRP 77
L+++ + G A VF Q+ V+ W+ +I + S +AL L+ + + RP
Sbjct: 221 LVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP 280
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++ T VI AC +E G+ VH + + + ++L+D++ KCGD+D +++F
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIF 340
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D M + ++SW +M++GLA G
Sbjct: 341 DSMSYKDLISWNSMVNGLALHG 362
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++Y L +D + LL++ + G A +F ++ + W MI + +
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALLLY M +GF PD+ T ++ AC + G ++H + + S L++
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y KCGD+ R++FD++ + V +W+ +I G
Sbjct: 224 MYAKCGDLKTARQVFDQLSDKDVYAWSALIFG 255
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ S G D A +F + + +WN M+ L + G +AL ++LM
Sbjct: 319 LNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTD 378
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEV 101
+PD+ TF V+ AC + +++GK++
Sbjct: 379 LQPDEITFIGVLTACSHAGLVQEGKKL 405
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+ GL +D + L+D+ S + D+AL VF ++ + WN +I + +A
Sbjct: 178 IIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEA 237
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M GF D+ T V++AC +E G++VH +K F +D+ + + L+D+
Sbjct: 238 LNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDM 295
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ F +M + V+SW+TM++GLA +G
Sbjct: 296 YCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNG 331
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT--IDGS 59
+ I G +V LL++ + + A +F ++ +V +W MI A + ++
Sbjct: 79 EHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDK 138
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+L+ L+L M G RP+ FT+ V++AC + +++H +K G D+FV+S
Sbjct: 139 ALKCLIL---MFREGVRPNMFTYSSVLRACDG---LPNLRQLHCGIIKTGLESDVFVRSA 192
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y K D+D +FD+M R +V W ++I G A + D + A
Sbjct: 193 LIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEA 237
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ + M +G D T+ +IK C A A+++GK VH G+ MFV +TL+
Sbjct: 38 RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLL 97
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++Y+K ++ +FD+M R+VVSWTTMIS +
Sbjct: 98 NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS 132
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
D +L L+D+ G + A FS++ V +W+ M+ L +G S QAL L+ M
Sbjct: 284 QDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESM 343
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCG 128
+G RP+ T V+ AC + +EKG + ++K F D + L+DL + G
Sbjct: 344 KESGSRPNYITVLGVLFACSHAGLVEKGW-YYFRSMKKLFGVDPGREHYGCLIDLLGRAG 402
Query: 129 DVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+D K+ +M V+W T++ ++D A
Sbjct: 403 RLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLA 439
>gi|15229753|ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g50420
gi|6561982|emb|CAB62471.1| putative protein [Arabidopsis thaliana]
gi|332645144|gb|AEE78665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 794
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-LM 70
D L LLD+ G A VF +I P++ +WN +I + +G QA+L+Y L+
Sbjct: 334 DLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLL 393
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ RPD++TF I A GK +HG K G+ R +FV +TL+ +Y K +
Sbjct: 394 RMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREA 453
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +K+FD M+ R VV WT MI G + G+ + A
Sbjct: 454 ESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELA 487
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G S++ ++ +L + S G + A +F + WN MI +
Sbjct: 224 QIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLKNDKIED 283
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+ + M+ +G P +FT+ V+ C + GK +H + + D+ + + L+D
Sbjct: 284 GLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLD 343
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y CGD+ +F ++ ++VSW ++ISG + +G
Sbjct: 344 MYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENG 380
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 21 DLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMICNGFR 76
+L S Y G + A VF ++ +V ++N + A + + + A L M +
Sbjct: 137 NLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVK 196
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P+ TF +++ C + G ++ +K G+S ++ VQ++++ +Y CGD++ R++
Sbjct: 197 PNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRI 256
Query: 137 FDKMRVRSVVSWTTMISG 154
FD + R V+W TMI G
Sbjct: 257 FDCVNNRDAVAWNTMIVG 274
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGF---SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ + C++ +++ +++H L + AG + + + L+ +Y++CG ++ RK+FDKM
Sbjct: 100 LTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMP 159
Query: 142 VRSVVSWTTMISGLAASGDL 161
R+VVS+ + S + + D
Sbjct: 160 HRNVVSYNALYSAYSRNPDF 179
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ + A VF ++ V W MI + G+S A+ + M R D F+ VI
Sbjct: 452 EAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIG 511
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
AC + +G+ H LA++ GF M V L+D+Y K G + +F +
Sbjct: 512 ACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKC 571
Query: 148 WTTMISGLAASGDLDAA 164
W +M+ + G ++ A
Sbjct: 572 WNSMLGAYSQHGMVEKA 588
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ GK + A +FS P + WN M+ A + G +AL + ++ NGF PD
Sbjct: 544 LVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPD 603
Query: 79 KFTFPFVIKACIASLAIEKGK----EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
T+ ++ AC + +GK ++ +KAGF S +++L K G VD
Sbjct: 604 AVTYLSLLAACSHRGSTLQGKFLWNQMKEQGIKAGFKH----YSCMVNLVSKAGLVDEAL 659
Query: 135 KMFDKMRVRSVVS--WTTMISGLAASGDL 161
++ ++ + + W T++S + +L
Sbjct: 660 ELIEQSPPGNNQAELWRTLLSACVNTRNL 688
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND +L +++ + S G + +VF ++R ++F WN ++ A T + A+ +++ +
Sbjct: 32 NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91
Query: 71 IC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
I +PD FT P VIKAC L + G+ +HG+A K D+FV + L+ +Y KCG
Sbjct: 92 ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 151
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V+ K+F+ M R++VSW ++I G + +G L +
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQES 186
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R GL+ D + LL L GK A ++F + + +WN+MI + +G +A+
Sbjct: 435 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAI 494
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ +G +P + V AC A+ GKE+H A+KA + D+FV S+++D+Y
Sbjct: 495 NLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMY 554
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + +++FD++R + V SW +I+G G
Sbjct: 555 AKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHG 589
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R+GL +++L+ + + G + VF + V +WN ++ + +AL
Sbjct: 335 RHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALD 394
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY M +G PD FT ++ AC ++ G+E+HG A++ G + D F+ +L+ LY+
Sbjct: 395 LYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYI 454
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
CG + +FD M RS+VSW MI+G + +G D A
Sbjct: 455 CCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEA 493
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC--NGFR 76
L + YGK + A+ VF + ++ +WN +I + +G ++ + M+ F
Sbjct: 142 LIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFV 201
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD T V+ C IEKG VHGLAVK G + ++ V ++L+D+Y KC + + +
Sbjct: 202 PDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLL 261
Query: 137 FDKMRVRSVVSWTTMISGLAASGDL 161
FDK +++VSW +MI G A D+
Sbjct: 262 FDKNDKKNIVSWNSMIGGYAREEDV 286
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL+ + ++ L+D+ S A L+F + ++ +WN MI + +
Sbjct: 231 VKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTF 290
Query: 65 LLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L M + D+FT V+ C+ ++ KE+HG + + G + V + +
Sbjct: 291 YLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIA 350
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y +CG + ++FD M ++V SW ++ G A + D
Sbjct: 351 AYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSD 388
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ L+ D + ++D+ + G + +F ++R V +WN++I I G +AL
Sbjct: 536 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEAL 595
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDL 123
L+ M+ G +PD FTF ++ AC + +E G E + + + ++D+
Sbjct: 596 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDM 655
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDL 161
+ G +D ++ ++M W++++S G+L
Sbjct: 656 LGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNL 694
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 85 VIKACIASLAIEKGKEVHGL-AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+++AC IE G+ +H + + F D + + ++ +Y CG R +FDK+R +
Sbjct: 4 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63
Query: 144 SVVSWTTMIS 153
++ W ++S
Sbjct: 64 NLFQWNAIVS 73
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL +D+++ L D+ G + A +F ++ V TW MI DG +
Sbjct: 239 IMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEG 298
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMD 122
L+ ++ +G +P+ FTF V+ AC A L +E GK+VHG +A F F S L+
Sbjct: 299 FELFAELLRSGIKPNDFTFAGVLNAC-ADLGVEGIGKQVHGHMTRADFDPFSFAASALVH 357
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG++ ++F M +VSWT++I+G A +G D A
Sbjct: 358 MYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEA 399
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRP 77
L+ C+ G A +F + F+W MI +AL LY LM C
Sbjct: 152 LISGCAKMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEALELYRLMKKCENLTS 211
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+KFT V+ A A + GKE+HG ++ G D V S L D+Y KCG ++ R +F
Sbjct: 212 NKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIF 271
Query: 138 DKMRVRSVVSWTTMI 152
DKM R VV+WT MI
Sbjct: 272 DKMVNRDVVTWTAMI 286
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
RP + +I++C+ + A+E GK+VH +GF + + + L+D+Y KC D+ +K
Sbjct: 77 RPSPSIYSSLIQSCLKNRALEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQK 136
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+F++M R + SW +ISG A G L A
Sbjct: 137 LFEEMGERDLCSWNVLISGCAKMGLLKEA 165
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+ + S G +A VF + P + +W +I +G +AL + L++ +G RPD
Sbjct: 355 LVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPD 414
Query: 79 KFTFPFVIKACIASLAIEKG 98
TF V+ AC + ++KG
Sbjct: 415 HITFVGVLSACAHAGLVDKG 434
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 35 VFSQIRCPHVFTWNLMIRALT-IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93
+F+QI P +F WN +I+A + I L+ M+ + PD FTFPF++KAC L
Sbjct: 71 LFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVL 130
Query: 94 --AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A + G +VH ++ GF D+FV + L++ Y GDV K+FD+ VR VS+ TM
Sbjct: 131 ISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTM 190
Query: 152 ISGLAASGDLDA 163
I+G A GD+
Sbjct: 191 INGFARKGDVSG 202
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 35/196 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G +D + LL+ +G +A VF + ++N MI G
Sbjct: 144 VLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGC 203
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLM 121
++ M RPD++TF ++ C G++VHGL + F ++ + + L+
Sbjct: 204 FRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLV 263
Query: 122 DLYLKC---------------------------------GDVDGGRKMFDKMRVRSVVSW 148
D+Y KC G+V R++FD+M R VVSW
Sbjct: 264 DMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSW 323
Query: 149 TTMISGLAASGDLDAA 164
T MISG + +G A
Sbjct: 324 TAMISGYSHAGCFQEA 339
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F Q+ V +W MI + G +AL L+ + G +PD+ +
Sbjct: 303 GEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAAL 362
Query: 87 KACIASLAIEKGKEVH--------GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
AC A+E G+ +H ++ GF+ S ++D+Y KCG +D +F
Sbjct: 363 SACARLGALELGRRIHRQYAGENWTCSINRGFT------SAVVDMYAKCGSIDIALDVFR 416
Query: 139 KMR--VRSVVSWTTMISGLAASG 159
K ++ + ++ISGLA G
Sbjct: 417 KTSDDKKTTFLYNSIISGLAHHG 439
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76
++D+ + G D AL VF + F +N +I L G A L+ M G +
Sbjct: 398 VVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLK 457
Query: 77 PDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PD TF V+ AC ++ GK++ + G S +M ++DL + G +D +
Sbjct: 458 PDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLGRAGHLDEAHR 517
Query: 136 MFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ KM ++ V W ++S GD+ A
Sbjct: 518 LILKMPFKANAVIWRALLSACKVHGDVALA 547
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A +F ++ P +N +IRAL+ + L+AL LY+ M+ +G +PD T+PFVIKAC
Sbjct: 147 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 206
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
S G VH VK+GF D ++ S+L+ LY D+ +++F+ R VVSW
Sbjct: 207 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 266
Query: 151 MISG 154
MI G
Sbjct: 267 MIDG 270
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +FS++ C V +WN M+ G +AL L++ M G +P + T ++
Sbjct: 337 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 396
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A++KG +H + V + L+D+Y KCG + ++F+ M + V+
Sbjct: 397 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 456
Query: 147 SWTTMISGLAASGDLDAA 164
+W T+I+G+A G++ A
Sbjct: 457 AWNTIIAGMAIHGNVKEA 474
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D +V L+ L + A +F+ V +WN MI A
Sbjct: 221 VVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHA 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++++ M+C D ++ +I I++ K + R++ ++++
Sbjct: 281 RMVFDRMVCR----DVISWNTMINGYAIVGKIDEAKRL----FDEMPERNLVSWNSMLAG 332
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++KCG+V+ +F +M R VVSW +M++ A G + A
Sbjct: 333 FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEA 373
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + GK A VF+ + V WN +I + I G+ +A L+ M G P+
Sbjct: 430 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPN 489
Query: 79 KFTFPFVIKACIASLAIEKGKEV 101
TF ++ AC + +++G+++
Sbjct: 490 DITFVAILSACSHAGMVDEGQKL 512
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+I+ GL+ND + LL + + D+AL +++ I P VF N MIR
Sbjct: 53 RILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCFVKGDL 112
Query: 60 SLQALLLYNLMICNGF--RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
++ LY+ M C F P+K T FV++AC + AI +G +V +K GF +D+FV+
Sbjct: 113 PRHSISLYSHM-CRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVR 171
Query: 118 STLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
+ L+ LY C V+ +++FD++ R VVSW +MI G G + A
Sbjct: 172 NALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVA 219
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A +F ++ V +W +I +G +AL + + RP++ ++
Sbjct: 214 GQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLL 273
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A +E GK +H +A F + + L+D+Y KCG +D R +FD+M +
Sbjct: 274 AAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKW 333
Query: 147 SWTTMISGLAASG 159
SW MI GLA G
Sbjct: 334 SWNVMICGLATHG 346
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D + +F ++ ++WN+MI L G +AL L+ + GF P
Sbjct: 307 LVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPV 366
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC + + +GK L G +M ++DL + G V +M
Sbjct: 367 NVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMI 426
Query: 138 DKMRVRS-VVSWTTMISGLAASGDLD 162
++M V W +++ G ++
Sbjct: 427 NRMPAPPDPVLWASVLGSCQVHGFIE 452
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 12 DQLLVRK------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++ VR ++D S + A L+FSQ+ + +W MI + + +AL
Sbjct: 100 DEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALA 159
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++N M NG PD+ T +I AC A++ GKE+H A++ GF D+++ S L+D+Y
Sbjct: 160 VFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYA 219
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG +D +F K+R +++ W ++I GLA G + A
Sbjct: 220 KCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEA 258
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ P FTF ++KAC + G+ VHG K GF +FVQ+ L+D Y G
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R++FD+M R V +WTTMIS A +GD+ +A
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSA 95
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D + L+D+ + G D +L+VF ++R ++F WN +I L + G + +AL ++
Sbjct: 203 GFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMF 262
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYL 125
+ M +P+ TF V+ AC + +E+G++ L++ FS ++ ++DL
Sbjct: 263 SRMQREKIKPNGVTFISVLGACTHAGLVEEGRK-RFLSMSRDFSIPPEIEHYGCMVDLLG 321
Query: 126 KCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
K G ++ ++ MR+ + V W ++ G
Sbjct: 322 KAGLLEDALELVRSMRMEPNSVIWGALLGG 351
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G D + L+D+ G+T +F I ++ +WN M+ +++G +A
Sbjct: 342 VTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEA 401
Query: 64 LLLYNLMI----------------CNGFR---------------PDKFTFPFVIKACIAS 92
L+N+M C F P+K TF ++ AC ++
Sbjct: 402 KYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACAST 461
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++KGK +HG VK G D +V + L D+Y K GD++ +K+F++M ++ VSWT MI
Sbjct: 462 ASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMI 521
Query: 153 SGLAASG 159
GLA SG
Sbjct: 522 QGLAESG 528
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
+LDL + A +F ++ + +W+ MI G ++L L+ MI GF+P+
Sbjct: 256 ILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPN 315
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
F ++ A + A++ G +HG K GF +D+FV S+L+D+Y KCG+ GR +FD
Sbjct: 316 ISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFD 375
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+ +++VSW M+ G + +G ++ A
Sbjct: 376 TILEKNMVSWNAMVGGYSLNGHMEEA 401
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 71/127 (55%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
YG+ ++ F + +V +W I +G S++A+ L+ ++ + +P+K TF V
Sbjct: 131 YGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSV 190
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++AC G V GL VK G+ D+ V ++L+ L L+ G++ R++FD+M + V
Sbjct: 191 VRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDV 250
Query: 146 VSWTTMI 152
VSWT ++
Sbjct: 251 VSWTAIL 257
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
NL + L DGS+L A L G +++ IK I L K E ++
Sbjct: 30 NLTNQGLIRDGSALHAHLFKT-----GISSEQY---ISIKLLIMYLNYRKSAEADQISKD 81
Query: 108 -AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
GF D+ V + ++ ++ G++D RK+FD+M + +SWT +ISG G
Sbjct: 82 FDGF--DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYG 132
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI++ G+ D + L D+ + G + + VF+++ + +W MI+ L G + +
Sbjct: 473 KIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEE 532
Query: 63 ALLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKA 108
+L L+ M + P++ F V+ AC S ++KG + V+GL K
Sbjct: 533 SLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKG 586
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V++WN +I L G S ++L ++ M +P++ TFP IK+C A + GK+ H
Sbjct: 47 VYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQ 106
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
A+ GF D+FV S L+D+Y KCG + R +FD++ R++V+WT++I+G + D
Sbjct: 107 QALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHE 166
Query: 164 A 164
A
Sbjct: 167 A 167
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 13/169 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+ + +G +D + L+D+ S GK +A ++F +I ++ TW +I + +
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165
Query: 62 QALLLYNLMICN---------GFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGF 110
+AL+++ + G D V+ AC +++ A+ +G VHG+A+K G
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG--VHGVAIKVGL 223
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ M V++TL+D Y KCG+V RK+FD M + VVSW +MI+ A +G
Sbjct: 224 DKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNG 272
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL + LLD + G+ + VF + V +WN MI +G S A
Sbjct: 219 IKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAF 278
Query: 65 LLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+++ M+ G + ++ T ++ AC A+ G +H +K G+ ++ + ++++D+
Sbjct: 279 EVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDM 338
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R FD M+ ++V SWT MI+G G
Sbjct: 339 YCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHG 374
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G N+ ++ ++D+ G+ + A F ++ +V +W MI + G + +
Sbjct: 319 QVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFARE 378
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-----VHGLAVKAGFSRDMFVQ 117
AL ++ MI G +P+ TF V+ AC + +E+G H V+ G
Sbjct: 379 ALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEH----Y 434
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
++DL + G + + M+V R V W ++++ D++ A
Sbjct: 435 GCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELA 482
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC---NGFRPDKFTFPFVIKACIA 91
F ++ + TWN +I + +G AL +Y M+ G +PD TF + AC
Sbjct: 116 TFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSV 175
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
I +G+E+ V +G++ D VQ+ L+++Y KCG ++ RK+FD+++ R V++W TM
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTM 235
Query: 152 ISGLAASG 159
ISG A G
Sbjct: 236 ISGYAKQG 243
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + G ++D ++ L+++ S G + A VF +++ V WN MI G++ Q
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M N +P+ TF ++ AC +E+G+ +H + G+ D+ + + L++
Sbjct: 248 ALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLN 307
Query: 123 LYLKC-GDVDGGRKMFDKMRVRSVVSWTTMI 152
+Y KC ++ R++F+++R R V++W +I
Sbjct: 308 MYTKCSSSLEEARQVFERLRTRDVITWNILI 338
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
+K+ +G +D ++ LL++ CS + A VF ++R V TWN++I A G
Sbjct: 288 RKVKEHGYESDLVIGNVLLNMYTKCS--SSLEEARQVFERLRTRDVITWNILIVAYVQYG 345
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ AL ++ M P++ T V+ AC A +GK VH L D+ +++
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+LM++Y +CG +D +F +R +S+VSW+T+I+ A G
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHG 446
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G AL VF I P+ +W L++ A +G +AL Y M+ G RPD F I
Sbjct: 6 GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
C +S +++G+ +H + ++ D+ + + L+ +Y +C D++ RK FD+M +++
Sbjct: 66 GVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125
Query: 146 VSWTTMISGLAASGD 160
V+W +I+G + +GD
Sbjct: 126 VTWNALIAGYSRNGD 140
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+++ + G D + VF+ IR + +W+ +I A G S L + ++
Sbjct: 400 DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELL 459
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
G D T + AC +++G + + G + D ++DL + G +
Sbjct: 460 QEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRL 519
Query: 131 DGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
+ + M + V+WT+++SG D A
Sbjct: 520 EAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRA 554
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+++ G+ N L+V L FY G+ AL F + V +W +I A + G
Sbjct: 209 NMVKVGVGN--LIVES--SLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGH 264
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++A+ ++ M+ + F P++FT ++KAC A+ G++VH L VK D+FV ++
Sbjct: 265 GIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTS 324
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LMD+Y KCG++ RK+FD M R+ V+WT++I+ A G
Sbjct: 325 LMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREG 364
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + + + L+ L G++ A V Q+ V +W MI + G +
Sbjct: 410 QIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESE 469
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL MI G P+ FT+ +KAC S ++ G+ +H +A K ++FV S L+
Sbjct: 470 ALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIH 529
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V ++FD M +++VSW MI G A +G
Sbjct: 530 MYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNG 566
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 2 QKIIRYGLSNDQLLVRK-----------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G L+V++ L+D+ + G+ VF + + TW +
Sbjct: 297 EKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSI 356
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I A +G +A+ L+ +M + T +++AC + A+ GKE+H +K
Sbjct: 357 IAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSI 416
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++++ STL+ LY KCG+ + ++ R VVSWT MISG ++ G A
Sbjct: 417 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 470
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 11 NDQLLV--RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+DQ++ L+ C G +A VF + + TW MI G +A L+
Sbjct: 113 DDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFE 172
Query: 69 LMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ +G R ++ F ++ C E G++VHG VK G ++ V+S+L+ Y +C
Sbjct: 173 DYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC 231
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G++ + FD M + V+SWT +IS + G
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKG 263
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
K +H +A+K + ++ + L+ ++ GD+ RK+FD M ++ V+WT MI G
Sbjct: 102 KRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKY 161
Query: 159 GDLDAA 164
G D A
Sbjct: 162 GLEDEA 167
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A VF +I P +N +IRA + G A+ LY M+ P+K+TFPFV+
Sbjct: 47 GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC A + G+ +H A G D+FV + L+DLY++C +F KM +R VV
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166
Query: 147 SWTTMISGLAASG 159
+W M++G A G
Sbjct: 167 AWNAMLAGYANHG 179
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+ D LL + + G + A ++F +I ++ ++ +G + +A
Sbjct: 332 LAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEA 391
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ M +PD T +I AC A++ G+ HG + G + + + ++L+D+
Sbjct: 392 FLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDM 451
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG +D R++FDKM R +VSW TMI+G G
Sbjct: 452 YAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHG 487
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 8 GLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
GL D + L+DL C+ +G A VF+++ V WN M+ G A+
Sbjct: 129 GLHTDLFVSTALIDLYIRCARFGP---AANVFAKMPMRDVVAWNAMLAGYANHGMYHHAI 185
Query: 65 L-LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD---MFVQSTL 120
L ++ G RP+ T ++ A+ +G VH ++A ++ + + + L
Sbjct: 186 AHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTAL 245
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+D+Y KC + ++F M VR+ V+W+ +I G
Sbjct: 246 LDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGF 280
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR GL+ + + L+D+ + G+ D + VF ++ + +WN MI I G +A
Sbjct: 434 IIR-GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L+ M GF PD TF +I AC S + +GK + K G M ++D
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 552
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
L + G +D + M +++ V W ++ ++D
Sbjct: 553 LLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNID 593
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 10 SNDQLLV-RKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ +Q+L+ LLD+ Y K H A VF + + TW+ +I + +A
Sbjct: 235 NEEQVLIGTALLDM---YAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFN 291
Query: 66 LYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ G + ++ C + + G ++H L K+G D+ ++L+ +Y
Sbjct: 292 LFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMY 351
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G ++ +FD++ ++ +S+ ++SG +G + A
Sbjct: 352 AKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEA 391
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 8 GLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
G+++ +R+LL C SF G D+A VF I P +F N+M+R + A +
Sbjct: 24 GITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFV 83
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY + +PD FTF ++++AC G +VHG VK G+ +D FV++ L++++
Sbjct: 84 LYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHA 143
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD+ + D+ R VV+ + +I+G AA G+LD A
Sbjct: 144 KCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIA 182
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
YG+ + A + + V +WN +I T G +AL + + M C G PD+ T +
Sbjct: 207 YGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSL 266
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ C ++ G+ +H L ++ + + L+ +Y KCGDV ++F +M+ R V
Sbjct: 267 LSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGDVQAAMEVFSRMKERDV 326
Query: 146 VSWTTMISGLAASGDLD 162
+W ++I GLA G +
Sbjct: 327 WTWNSIIGGLAFHGQAE 343
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A+ VFS+++ V+TWN +I L G + Q++ +N M+ G P++ +F V+
Sbjct: 309 GDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVL 368
Query: 87 KACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-S 144
AC + +E G+ L + + + S ++D+ + G +D + MR +
Sbjct: 369 GACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAIVSSMRCEPA 428
Query: 145 VVSWTTMISGLAASGDL 161
VV W T++ GD+
Sbjct: 429 VVIWRTLLGACRIHGDV 445
>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Glycine max]
Length = 945
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 83/147 (56%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL+ + + G D A VF ++R ++FTW+ MI A + D + + L+ M+ +G P
Sbjct: 123 KLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLP 182
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D F P V+KAC IE G+ +H L ++ G + V ++++ +Y KCG++ K+F
Sbjct: 183 DDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIF 242
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+M R+ VSW +I+G G+++ A
Sbjct: 243 RRMDERNCVSWNVIITGYCQRGEIEQA 269
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P V+TW MI T G +A L M+ G P+ T AC + ++ G E+
Sbjct: 318 PDVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACASVKSLSMGSEI 377
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
H +AVK D+ + ++L+D+Y K GD++ + +FD M R V SW ++I G +G
Sbjct: 378 HSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVYSWNSIIGGYCQAG 435
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 27 GKTDHALLVFSQIRC-----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
G D AL +F +I P+V +WN +I + +AL ++ M + P+ T
Sbjct: 470 GDEDEALNLFLRIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVT 529
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
++ AC +A +K KE+H A + ++ V +T +D Y K G++ RK+FD +
Sbjct: 530 VLTILPACTNLVAAKKVKEIHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFDGLS 589
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+ ++SW +++SG G ++A
Sbjct: 590 PKDIISWNSLLSGYVLHGCSESA 612
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
+ L +GS +A+ + + + G + TF +++ACI I G+E+H + G
Sbjct: 56 LNQLCANGSLSEAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELH---TRIGL 112
Query: 111 SR--DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
R + FV++ L+ +Y KCG +D RK+FD+MR R++ +W+ MI A S DL
Sbjct: 113 VRKVNPFVETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIG--ACSRDL 163
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D +V L+D G + A VF + + + ++ A DG +AL
Sbjct: 340 LKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEAL 399
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY M G +PD F ++ AC + A E+GK+VH +K GF D+F ++L+++Y
Sbjct: 400 RLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMY 459
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ F ++ VR +VSW+ MI GLA G
Sbjct: 460 AKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHG 494
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G +D L+D+ + G + A VF +I P + +WN +I + +A
Sbjct: 137 LIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRA 196
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L M +G P+ FT +KAC E G+++H +K D F+ L+D+
Sbjct: 197 LELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDM 256
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC +D R +F M R +++W +ISG + + + + A
Sbjct: 257 YSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEA 297
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 76/151 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G +D+ + L+ L + G A +F I V +WN + +A
Sbjct: 36 VVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEA 95
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M+ +G RP++F+ +I C +G+++HG +K G+ D F + L+D+
Sbjct: 96 VSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDM 155
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G ++ +FD++ +VSW +I+G
Sbjct: 156 YAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G + ++F FP V+KAC + + GK+VHG+ V GF D FV ++L+ LY KCG
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 134 RKMFDKMRVRSVVSWTTMIS 153
R +FD + RSVVSW + S
Sbjct: 65 RSLFDAIPDRSVVSWNALFS 84
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 84/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ + +D L L+D+ S D A LVF + + WN +I + + +A
Sbjct: 238 LIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEA 297
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ LM G ++ T V+K+ A A +++H L++K+GF D +V ++L+D
Sbjct: 298 ASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG V+ ++F++ + +V +T++++ A G + A
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEA 398
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+++G +D L+++ + G + A FS+I + +W+ MI L G +A
Sbjct: 440 ILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEA 499
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M+ G P+ T V+ AC A L E + + + G + ++D
Sbjct: 500 LQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMID 559
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
L + G ++ ++ +KM ++ + W ++ ++D
Sbjct: 560 LLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNID 600
>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
Length = 785
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMI----RALTIDGS 59
+I+ GL +D LV ++D+ + G A +F ++ P+V +N MI R T+ G
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297
Query: 60 SL--QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ +AL LY+ + G +P +FTF V++AC + +E GK++HG +K F D F+
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
S L+DLY G ++ G + F +V+WT M+SG
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSG 394
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+Y D + L+DL G + F + TW M+ + +
Sbjct: 344 QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEK 403
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLM 121
AL L++ + G +PD FT V+ AC ASLA+ + G+++ A K+GF R + ++ +
Sbjct: 404 ALSLFHESLGAGLKPDLFTISSVMNAC-ASLAVARAGEQIQCFATKSGFDRFTVMGNSCV 462
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y + GDVD + F +M VVSW+ +IS A G
Sbjct: 463 HMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHG 500
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+ ++NL+I A + +G + +L G D+F++ + AC + + G+ VH
Sbjct: 73 NAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVH 132
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LA+ G S +FV ++L+ +Y KCG++ R++FD R VSW +++SG +G
Sbjct: 133 ALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAG 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GLS+ + L+ + S G+ A VF +WN ++ G+ + + ++
Sbjct: 139 GLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVF 198
Query: 68 NLMICNGFRPDKFTFPFVIKACIA--SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+M G + F VIK C ++ + VHG +KAG D+F+ S ++D+Y
Sbjct: 199 AMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYA 258
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K G + +F ++ +VV + TMI+G
Sbjct: 259 KKGALVEAAALFRSVQEPNVVMFNTMIAGF 288
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+R G+ ++ L L+++ G A VF + V +WN MI GS
Sbjct: 455 EDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYE 514
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L+ M PD TF V+ C A+E GK++HG ++G D+ + + L+
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++Y++CG + R +F ++ R V+SWT MI G A G+
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF ++ V +WN +I G +A L+ M GF P+K T+ ++ AC +
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
+E GK++H +KAG+ RD VQ++L+ +Y KCGD+ R++F + R VVS+ TM
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200
Query: 152 I 152
+
Sbjct: 201 L 201
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL++D + L+ +C G D A F I V +N +I AL G +++A
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAF 315
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
Y M +G ++ T+ ++ AC S A+E GK +H + G S D+ + + L+ +Y
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+CGD+ R++F M R ++SW +I+G A D A
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S+D + L+ + + G A +F + + +WN +I +A+ LY
Sbjct: 360 GHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLY 419
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G +P + TF ++ AC S A GK +H +++G + + + LM++Y +C
Sbjct: 420 KQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC 479
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + + +F+ + R V+SW +MI+G A G + A
Sbjct: 480 GSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G D + LL + G A VF+ I V ++N M+ +
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKE 212
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M G PDK T+ ++ A +++GK +H L V+ G + D+ V + L+
Sbjct: 213 CLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVT 272
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ ++CGDVD ++ F + R VV + +I+ LA G
Sbjct: 273 MCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHG 309
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 76 RP---DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
RP D+ T+ +++ C + + K +H V+AG D+F+ + L+++Y+KC V
Sbjct: 21 RPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD 80
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
++F +M R V+SW ++IS A G
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQG 107
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I GL D L L+++ G A VF ++ V +W MI G ++
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616
Query: 63 ALLLYNLMICNGFR-PDKFTFPFVIKAC 89
A+ L+ M GFR PD TF ++ AC
Sbjct: 617 AIELFWQMQNEGFRPPDGSTFTSILSAC 644
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 87/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I + L +D LV LL F+ +T ++ L+FS + P++F +N +I + +
Sbjct: 36 LIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHET 95
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ + +G FTFP V+KAC + + G ++H L VK GF+ D+ ++L+ +
Sbjct: 96 LDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSI 155
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y G ++ K+F+++ RSVV+WT + SG +G
Sbjct: 156 YSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAG 191
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 84/155 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++D + LL + S G+ + A VF +I V TW + T G +A
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREA 196
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G RPD + V+ AC+ ++ G+ + + ++ FV++TL++L
Sbjct: 197 IDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNL 256
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG ++ R +FD M + +V+W+TMI G A++
Sbjct: 257 YAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASN 291
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 75/143 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L + GK + A VF + + TW+ MI+ + + + + M+ +PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPD 312
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F+ + +C + A++ G+ L + F ++F+ + L+D+Y KCG + G ++F
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 139 KMRVRSVVSWTTMISGLAASGDL 161
+M+ + +V ISGLA +G +
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHV 395
>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 653
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ G +D ++ L+D+ YGK+ + A +F + +FTWN ++ G
Sbjct: 289 VKTGSGSDIVVSNALIDM---YGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHD 345
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQ 117
L L+ M+C+G RPD T V+ C ++ +G+E+HG + +G S + F+
Sbjct: 346 GTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIH 405
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++LMD+Y+KCGD+ R +FD MRV+ SW MI+G
Sbjct: 406 NSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMING 442
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G +D R L + Y K A+LVF VF +N +I ++GS
Sbjct: 86 MVRKGFLDDS--PRAGTSLVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFVVNGSP 142
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L A+ Y M NG PDK+TFP ++K A + + K+VHGLA K GF D +V S L
Sbjct: 143 LDAMETYREMRANGILPDKYTFPSLLKGSDA-MELSDVKKVHGLAFKLGFDSDCYVGSGL 201
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLA 156
+ Y K V+ +K+FD++ R V W +++G +
Sbjct: 202 VTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYS 238
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN ++ + ALL+++ M G + T V+ A S I+ G+ +HGLAV
Sbjct: 230 WNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAV 289
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G D+ V + L+D+Y K ++ +F+ M R + +W +++ GD D
Sbjct: 290 KTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGT 347
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S+++ + L+D+ G A +VF +R +WN+MI + AL +++
Sbjct: 399 SSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSC 458
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGK 99
M G +PD+ TF +++AC S + +G+
Sbjct: 459 MCRAGVKPDEITFVGLLQACSHSGFLNEGR 488
>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
Length = 785
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMI----RALTIDGS 59
+I+ GL +D LV ++D+ + G A +F ++ P+V +N MI R T+ G
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297
Query: 60 SL--QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ +AL LY+ + G +P +FTF V++AC + +E GK++HG +K F D F+
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
S L+DLY G ++ G + F +V+WT M+SG
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSG 394
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+Y D + L+DL G + F + TW M+ + +
Sbjct: 344 QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEK 403
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLM 121
AL L++ + G +PD FT V+ AC ASLA+ + G+++ A K+GF R + ++ +
Sbjct: 404 ALSLFHESLGAGLKPDLFTISSVMNAC-ASLAVARAGEQIQCFATKSGFDRFTVMGNSCV 462
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y + GDVD + F +M VVSW+ +IS A G
Sbjct: 463 HMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHG 500
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+ ++NL+I A + +G + +L G D+F++ + AC + + G+ VH
Sbjct: 73 NAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVH 132
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LA+ G S +FV ++L+ +Y KCG++ R++FD R VSW +++SG +G
Sbjct: 133 ALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAG 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GLS+ + L+ + S G+ A VF +WN ++ G+ + + ++
Sbjct: 139 GLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVF 198
Query: 68 NLMICNGFRPDKFTFPFVIKACIA--SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+M G + F VIK C ++ + VHG +KAG D+F+ S ++D+Y
Sbjct: 199 AMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYA 258
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K G + +F ++ +VV + TMI+G
Sbjct: 259 KKGALVEAAALFRSVQEPNVVMFNTMIAGF 288
>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial; Flags: Precursor
gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 775
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II GLS + + KL+ + YGK + + VF + +F WN +I+A +G ++
Sbjct: 50 IITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARS 109
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
L + M+ +G PD FT P V+ AC L G VHGL +K GF R+ V ++ +
Sbjct: 110 LCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVY 169
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + +FD+M R VV+WT +ISG +G+ +
Sbjct: 170 FYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGG 211
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
+V L+DL G A +F + +V TWN MI + S +A+ L++ M+
Sbjct: 470 VVNSLIDLYGKMGDLTVAWRMFCEAD-TNVITWNAMIASYVHCEQSEKAIALFDRMVSEN 528
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
F+P T ++ AC+ + ++E+G+ +H + ++ + + L+D+Y KCG ++ R
Sbjct: 529 FKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSR 588
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++FD + V W MISG GD+++A
Sbjct: 589 ELFDAGNQKDAVCWNVMISGYGMHGDVESA 618
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 25 FYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF---RPD 78
FY K A LVF ++ V W +I +G S L M G +P+
Sbjct: 170 FYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPN 229
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T +AC A+++G+ +HG AVK G + FVQS++ Y K G+ F
Sbjct: 230 PRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFR 289
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ + SWT++I+ LA SGD++ +
Sbjct: 290 ELGDEDMFSWTSIIASLARSGDMEES 315
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL++ + + + S G A L F ++ +F+W +I +L G ++
Sbjct: 257 VKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESF 316
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M G PD +I + + +GK HG ++ FS D V ++L+ +Y
Sbjct: 317 DMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMY 376
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
K + K+F ++ + +W TM+ G
Sbjct: 377 CKFELLSVAEKLFCRISEEGNKEAWNTMLKG 407
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQ 62
+IR+ S D + LL + + A +F +I + WN M++ ++
Sbjct: 357 VIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVK 416
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ + G D + VI +C A+ GK +H VK + V ++L+D
Sbjct: 417 CIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLID 476
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
LY K GD+ +MF + +V++W MI+
Sbjct: 477 LYGKMGDLTVAWRMFCEADT-NVITWNAMIA 506
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G + + +F WN+MI + G A+ L++ M +
Sbjct: 570 LSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESD 629
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEV----HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+P TF ++ AC + +E+GK++ H VK S L+DL + G++
Sbjct: 630 VKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKH----YSCLVDLLSRSGNL 685
Query: 131 DGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ M V W T++S G+ +
Sbjct: 686 EEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFE 718
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C SL++E ++ + L + G S ++FV S L+ Y G + ++F + R + W
Sbjct: 34 CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93
Query: 149 TTMISGLAASGD 160
++I ++GD
Sbjct: 94 NSIIKAHFSNGD 105
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II GL + L+ KL+ L G +A +F + P F ++ +++ + G S+
Sbjct: 50 IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 109
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+L Y M+ +G +TF VIKAC A+ GKE+H + G+ DM+VQ+ L+ L
Sbjct: 110 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 169
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K D+ +K+FD M R++++W ++ISG +G
Sbjct: 170 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNG 205
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 73/125 (58%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF + + WN +I +G +++ L++LM+ +GF+PD T ++ +C A
Sbjct: 182 VFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGA 241
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ G +H A GF ++ + ++L+++Y +CG+V R++FD M+ R+VV+WT MISG
Sbjct: 242 LDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISG 301
Query: 155 LAASG 159
G
Sbjct: 302 YGMHG 306
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + +L L+++ + G A VF ++ +V TW MI + G QA+ L+
Sbjct: 256 GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF 315
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLK 126
M G RP+ TF V+ AC S I+ G+ V +A G + ++D++ +
Sbjct: 316 TEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGR 375
Query: 127 CGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASGDLD 162
G ++ + K + WT+M+ + D
Sbjct: 376 AGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFD 413
>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g52850, chloroplastic; Flags: Precursor
gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 893
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLC----SFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTI 56
+I++GL + LDLC S Y KTD +A +F ++ VF W +MI A T
Sbjct: 49 VIKFGLLEN-------LDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTK 101
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
AL L+ M+ +G P++FTF V+++C I G VHG +K GF + V
Sbjct: 102 SQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVV 161
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
S+L DLY KCG ++F ++ +SWT MIS L +
Sbjct: 162 GSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGA 203
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + + ++ L+D + K D+A V ++ T+ ++ G A
Sbjct: 453 LLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMA 512
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + N M +G R D+ + P I A A+E GK +H +VK+GFS V ++L+D+
Sbjct: 513 LSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDM 572
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ +K+F+++ VVSW ++SGLA++G + +A
Sbjct: 573 YSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSA 613
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
II G+ + +L L+D S + K + A+ V + VF W ++ + + +
Sbjct: 249 NIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKE 308
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ + M G +P+ FT+ ++ C A +++ GK++H +K GF V + L+D
Sbjct: 309 AVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVD 368
Query: 123 LYLKC--GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+KC +V+ R +F M +VVSWTT+I GL G
Sbjct: 369 MYMKCSASEVEASR-VFGAMVSPNVVSWTTLILGLVDHG 406
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + ++ L DL S G+ A +FS ++ +W +MI +L +A
Sbjct: 150 VIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREA 209
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y+ M+ G P++FTF ++ A + L +E GK +H + G ++ ++++L+D
Sbjct: 210 LQFYSEMVKAGVPPNEFTFVKLLGAS-SFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDF 268
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y + ++ ++ + + V WT+++SG
Sbjct: 269 YSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGF 300
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
G +H +K G ++ + + L+ LYLK + RK+FD+M R+V +WT MIS
Sbjct: 42 GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTK 101
Query: 158 SGDLDAA 164
S + +A
Sbjct: 102 SQEFASA 108
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+ I+ G + + L+D+ CS A VF + P+V +W +I L G
Sbjct: 350 QTIKVGFEDSTDVGNALVDMYMKCS--ASEVEASRVFGAMVSPNVVSWTTLILGLVDHGF 407
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L M+ P+ T V++AC + + E+H ++ +M V ++
Sbjct: 408 VQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNS 467
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D Y VD + M+ R +++T++++ G + A
Sbjct: 468 LVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMA 512
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G S ++ L+D+ S G + A VF +I P V +WN ++ L +G AL
Sbjct: 555 VKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSAL 614
Query: 65 LLYNLMICNGFRPDKFTFPFVIKAC 89
+ M PD TF ++ AC
Sbjct: 615 SAFEEMRMKETEPDSVTFLILLSAC 639
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD--HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ I+ GLS++ L + K++ C D +A VF +I P VF WN MI+ + S
Sbjct: 57 QTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCS 116
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQST 119
+ LY LM+ + +PD FTFPF++K +A++ GK + AV GF ++FVQ
Sbjct: 117 ESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKG 176
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ L+ CG V+ RK+FD VV+W ++SG
Sbjct: 177 FIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSG 211
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 2 QKIIRYGLSNDQLLVRK-LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT----- 55
K I+ G+ L++ L+D+ + G+ D A VF +++ V +W ++
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322
Query: 56 ---------------------IDG-----SSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
IDG + L L+ M + +PD+FT ++ AC
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTAC 382
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
A+E G+ K D F+ + L+D+Y KCG+V+ +K+F++M+ + +WT
Sbjct: 383 AHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWT 442
Query: 150 TMISGLAASGDLDAA 164
MI GLA +G + A
Sbjct: 443 AMIVGLANNGHGEEA 457
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 7 YGLSNDQLLVRK-LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+G + L V+K + L S G ++A +F V TWN+++ ++
Sbjct: 164 HGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKR 223
Query: 66 LYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMD 122
L+ M C P+ T ++ AC + GK ++ +K G ++ +++ L+D
Sbjct: 224 LFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALID 283
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ CG++D R +FD+M+ R V+SWT++++G A + +D A
Sbjct: 284 MFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLA 325
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ ND + L+D+ G + A +F++++ FTW MI L +G +AL +++
Sbjct: 403 IKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFS 462
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ PD+ T+ V+ AC + KGK +AV+ G ++ ++DL +
Sbjct: 463 YMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRA 522
Query: 128 GDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
G + ++ M V+ + + W +++ ++ A
Sbjct: 523 GHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLA 560
>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 436
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
II+ GL +D + L+D+ S +G++++AL VF+++ + WN +I + +
Sbjct: 180 NIIKSGLDSDVYVRSALIDIYSKWGESENALYVFNEMVTGDLIVWNSIIAGFAQNNDGDE 239
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M NGF ++ V++AC +E G++VH K +D+ + + L+D
Sbjct: 240 ALNLFKSMKRNGFPANQSALTSVLRACTGLALLELGRQVHVHVFK--HDQDLVLNNALLD 297
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG ++ +F +M + V+SW+TMI+G A +G
Sbjct: 298 MYCKCGSLEDANYVFTRMVEKDVISWSTMIAGFAQNG 334
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + L+ LL++ + D AL +F Q+ +V +W MI A + + +AL
Sbjct: 87 GYQPNIFLINMLLNMYVKFNLLDEALTLFDQMPERNVVSWTTMISAFSNAKLNDKALEFL 146
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ G +P+ +T+ +++AC + +++HG +K+G D++V+S L+D+Y K
Sbjct: 147 ICMLREGVKPNVYTYSSILRACDGVYNL---RQLHGNIIKSGLDSDVYVRSALIDIYSKW 203
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G+ + +F++M ++ W ++I+G A + D D A
Sbjct: 204 GESENALYVFNEMVTGDLIVWNSIIAGFAQNNDGDEA 240
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 62/103 (60%)
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ + M +G D FT+ +IK C+A AIE+GK+V+ G+ ++F+ + L+
Sbjct: 40 RAMKAMDAMHKHGIWADSFTYSELIKCCLARNAIEQGKQVYKHLSSNGYQPNIFLINMLL 99
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y+K +D +FD+M R+VVSWTTMIS + + D A
Sbjct: 100 NMYVKFNLLDEALTLFDQMPERNVVSWTTMISAFSNAKLNDKA 142
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L LLD+ G + A VF+++ V +W+ MI +G S +AL L+ M
Sbjct: 288 DLVLNNALLDMYCKCGSLEDANYVFTRMVEKDVISWSTMIAGFAQNGYSREALKLFESMK 347
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKG 98
+G +P+ T V+ AC + +E G
Sbjct: 348 VSGTKPNYITILGVLFACSHAGLLEAG 374
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II GL + L+ KL+ L G +A +F + P F ++ +++ + G S+
Sbjct: 114 IIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 173
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+L Y M+ +G +TF VIKAC A+ GKE+H + G+ DM+VQ+ L+ L
Sbjct: 174 VLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIAL 233
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K D+ +K+FD M R++++W ++ISG +G
Sbjct: 234 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNG 269
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 73/125 (58%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF + + WN +I +G +++ L++LM+ +GF+PD T ++ +C A
Sbjct: 246 VFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGA 305
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ G +H A GF ++ + ++L+++Y +CG+V R++FD M+ R+VV+WT MISG
Sbjct: 306 LDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISG 365
Query: 155 LAASG 159
G
Sbjct: 366 YGMHG 370
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + +L L+++ + G A VF ++ +V TW MI + G QA+ L+
Sbjct: 320 GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF 379
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLK 126
M G RP+ TF V+ AC S I+ G+ V +A G + ++D++ +
Sbjct: 380 TEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGR 439
Query: 127 CGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASGDLD 162
G ++ + K + WT+M+ + D
Sbjct: 440 AGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFD 477
>gi|115480209|ref|NP_001063698.1| Os09g0520300 [Oryza sativa Japonica Group]
gi|113631931|dbj|BAF25612.1| Os09g0520300 [Oryza sativa Japonica Group]
Length = 657
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF- 75
L+D + +G + A L+F ++ +W MI + + +AL + M+ +
Sbjct: 306 NSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYI 365
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD FTF V+ AC ++ + G+ VH A + GF+ ++V + L+D+Y KCGDV+G
Sbjct: 366 QPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANN 425
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FD + + +VSW TM+ G A +G
Sbjct: 426 VFDAIHQKDLVSWNTMLFGFAING 449
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G ++ + L+D+ + G + A VF I + +WN M+ I+G +AL +Y
Sbjct: 399 GFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVY 458
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFVQSTL 120
+M + PD+ TF ++ AC S +E+G+ VHG+ K S +
Sbjct: 459 EIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEH------LSCV 512
Query: 121 MDLYLKCGDVDGGRKMFDK 139
+D+Y + G++ +M ++
Sbjct: 513 LDMYARSGNIAKAIEMMEQ 531
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 13 QLLVRKLLDLCSF------YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
++ R L CS G + A +F ++ WN ++ + G++ Q L L
Sbjct: 184 EMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLAL 243
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-----------SRDMF 115
+N M +G D T ++ AC G +H + V++G+ +R
Sbjct: 244 FNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEIFESMKTRTTA 303
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++L+D + + G ++ +F+ +++SWT MI G A
Sbjct: 304 SWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFA 344
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 21 DLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGS--SLQALLLYNLMICNGF 75
+L FY K H A LVF ++ +V ++N +I L+ +GS S L L+ MI N
Sbjct: 48 NLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNI 107
Query: 76 RPDKFTFPFVIKACIASLAIE-KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
PD TFP V A +L ++VH L +K D+FV S+L++ Y K G V R
Sbjct: 108 LPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEAR 167
Query: 135 KMFDKMRVRSVVSWTTMISGLAA 157
K+FD+M R++VSWTTMISG A+
Sbjct: 168 KLFDRMPERNLVSWTTMISGYAS 190
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G L+D+ + +G T A F + P + W +I +G + +A
Sbjct: 340 LLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEA 399
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y M P++ T V+KAC A+E+GK++H +K G ++ ++S L +
Sbjct: 400 LSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTM 459
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ G +F +M R +VSW MISGL+ +G
Sbjct: 460 YAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNG 495
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 77/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G +++L++F + TW+ +I + G S +AL L++ M GF P +FT V+
Sbjct: 262 GNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVL 321
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC AIE+GK+ HG +K+G+ ++ + L+D+Y K G RK FD + +V
Sbjct: 322 KACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLV 381
Query: 147 SWTTMISGLAASGDLDAA 164
WT++I+G +G + A
Sbjct: 382 LWTSIIAGYVQNGKNEEA 399
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 21 DLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L +FY K A +F ++ ++ +W MI + +AL ++ LM
Sbjct: 152 SLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNL 211
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++F F V+ A + ++ GK+VH + VK G + V + L+ +Y KCG+++ +F
Sbjct: 212 NEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLF 271
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++ ++W+ +I+G + +GD A
Sbjct: 272 EMCSDKNAITWSALITGYSQAGDSHKA 298
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+YGL + + L + + G + +L+F ++ + +WN MI L+ +G +
Sbjct: 440 RTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGRE 499
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
AL L+ M G +PD TF V+ AC +++G
Sbjct: 500 ALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRG 535
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 94 AIEKGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++KG+ +H +K + S ++ + L+ Y KCG + G + +F+ ++ ++VVS+ +I
Sbjct: 22 SLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLI 81
Query: 153 SGLAASGD 160
GL+ +G
Sbjct: 82 HGLSHNGS 89
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ + A +F ++ V +WN MI +G + + L +Y M+ G D T V+
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
C S + GK VH LA+K+ F R + +TL+D+Y KCGD+DG ++F+KM R+VVS
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319
Query: 148 WTTMISGLAASGDLDAA 164
WT+MI+G G D A
Sbjct: 320 WTSMIAGYTRDGRSDGA 336
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ S G D AL VF ++ +V +W MI T DG S A+ L M G + D
Sbjct: 292 LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLD 351
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ AC S +++ GK+VH ++FV + LMD+Y KCG ++ +F
Sbjct: 352 VVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFS 411
Query: 139 KMRVRSVVSWTTMISGL 155
M V+ ++SW TMI L
Sbjct: 412 TMVVKDIISWNTMIGEL 428
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 21/151 (13%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ ++ + L+D+ + G + A VFS + + +WN MI L
Sbjct: 383 MESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGEL-------------- 428
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+PD T V+ AC + A+E+GKE+HG ++ G+S D V + L+DLY+KCG
Sbjct: 429 -------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG 481
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ R +FD + + +VSWT MI+G G
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+C + T+ V++ C + GK+VH + D + L+ Y CGD+
Sbjct: 91 MCQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDL 150
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GR++FD M ++V W M+S A GD +
Sbjct: 151 KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G S+D+ + L+DL G A L+F I + +W +MI + G +A
Sbjct: 458 ILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEA 517
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ +N M G PD+ +F ++ AC S +E+G
Sbjct: 518 IATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 552
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + G + LL+ L+D +G A+ VF + VF+WN MI S+ Q
Sbjct: 83 RISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQ 142
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L+ M+ G P+ +TF V+KAC+ +A K+VH GF V + L+
Sbjct: 143 VFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLI 202
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
DLY K G ++ +K+F+ + ++ +V+W MISGL+ +G
Sbjct: 203 DLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNG 240
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++G ++ + L+ L S K A +FS + ++N +I L G S +A
Sbjct: 287 VIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + +PD T ++ AC + A+ KG ++H A+KAG S D+ ++ +L+DL
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y KC DV+ K F ++V W M L A G LD
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVM---LVAYGQLD 442
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 81/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+D+ + YG+ AL + ++ V +W MI +A
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G + D F I AC A+ +G+++H + AGF D+ + + L+ L
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG + F+K+ ++ +SW +++SGLA SG + A
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+S D +L LLDL S + A F ++ WN+M+ A + +
Sbjct: 389 IKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSF 448
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M G P++FT+P +++ C + A+ G+++H +K GF +++V S L+D+Y
Sbjct: 449 EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G + ++ ++ VVSWT MI+G
Sbjct: 509 AKYGQLALALRILRRLPEDDVVSWTAMIAG 538
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
YG + L+ L+DL S G + A VF+ I + TW MI L+ +G +A+LL
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M + P + V+ A E G+++H L +K GF + +V + L+ LY +
Sbjct: 249 FCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR 308
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++F M R VS+ ++ISGL G D A
Sbjct: 309 SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D + L+ L + G+ A L F +I + +WN ++ L G +AL ++
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVF 653
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ + FT+ I A + I++G+++H + +K G+ + V ++L+ LY K
Sbjct: 654 VRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKS 713
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + + F+ M R+V+SW MI+G + G
Sbjct: 714 GSISDAWREFNDMSERNVISWNAMITGYSQHG 745
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
L ++ + + L N M G R + + ++++ C+ S ++ + +H K+GF
Sbjct: 32 TLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDG 91
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+ + +L+D Y + GD G K+FD+ RSV SW MI A
Sbjct: 92 EPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVA 136
>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 652
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ G + ++ L+DL YGK+ + A +F + +FTWN ++ G
Sbjct: 288 VKMGFDSGIVVSNALIDL---YGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHD 344
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQ 117
L L+ M+C+G RPD T V+ C ++++G+E+HG + +G S + F+
Sbjct: 345 GTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIH 404
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++LMD+Y+KCGD+ R +FD MRV+ SW MI+G
Sbjct: 405 NSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMING 441
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G +D R + L + Y K A+LVF VF +N +I ++GS
Sbjct: 85 MVRKGFLDDS--PRAVTSLVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFVVNGSP 141
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L A+ +Y M G PDK+TFP ++K A + + K+VH LA K GF D +V S L
Sbjct: 142 LDAMDMYREMRAKGILPDKYTFPSLLKGSDA-MEVSDVKKVHALAFKLGFVSDCYVGSAL 200
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLA 156
+ Y K V+ +K+FD++ R V W +++G +
Sbjct: 201 VTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYS 237
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN ++ + AL++++ M G + T V+ + S ++ G+ +HGLAV
Sbjct: 229 WNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAV 288
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K GF + V + L+DLY K ++ +F+ M R + +W +++ GD D
Sbjct: 289 KMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGT 346
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S++ + L+D+ G A +VF +R +WN+MI + AL +++
Sbjct: 398 SSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSC 457
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
M G +PD+ TF +++AC S + +G+
Sbjct: 458 MCRAGVKPDEITFVGLLQACSHSGFVNEGRN 488
>gi|255564460|ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537522|gb|EEF39147.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 488
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGK-TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+++R L ++ +L KL+ + S + + T H+L F + C ++++WN++I
Sbjct: 59 RLLRTSLYDNVVLSSKLVLMYSHHNRLTPHSLSTFFHMPCKNIYSWNIIIGEFARSNLPE 118
Query: 62 QALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+++ L+ ++ + F+PD F+ P V++AC S + G VHGL VK G + +FV S L
Sbjct: 119 KSVDLFIDMRRDSHFQPDDFSLPLVLRACAGSGLGKLGSSVHGLCVKMGLAVSLFVGSAL 178
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+ +Y+ G+V R +FD+M R V WT ++SG A +G+
Sbjct: 179 VFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQNGE 218
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL+ + L+ + +G +A +VF ++ W ++ +G L
Sbjct: 164 VKMGLAVSLFVGSALVFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQNGEPKLGL 223
Query: 65 LLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++ M+ N R D ++ C +++ GK VHG V+ ++ + + ++
Sbjct: 224 QVFREMVDNSTRVKLDWVVMVSLLLVCGQLGSLKHGKSVHGWCVRNCLRLELSLGNAIVH 283
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+KCG + + FDKM R V SW+++I G SG++ A
Sbjct: 284 MYIKCGMLAYAHRFFDKMPERDVFSWSSLILGYGLSGNVSVA 325
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ + A +F ++ V +WN MI +G + + L +Y M+ G D T V+
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
C S + GK VH LA+K+ F R + +TL+D+Y KCGD+DG ++F+KM R+VVS
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319
Query: 148 WTTMISGLAASGDLDAA 164
WT+MI+G G D A
Sbjct: 320 WTSMIAGYTRDGRSDGA 336
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ S G D AL VF ++ +V +W MI T DG S A+ L M G + D
Sbjct: 292 LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLD 351
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ AC S +++ GK+VH ++FV + LMD+Y KCG ++ +F
Sbjct: 352 VVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFS 411
Query: 139 KMRVRSVVSWTTMISGL 155
M V+ ++SW TMI L
Sbjct: 412 TMVVKDIISWNTMIGEL 428
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
+ ++ + L+D+ + G + A VFS + + +WN MI L
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGEL------------- 428
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+PD T V+ AC + A+E+GKE+HG ++ G+S D V + L+DLY+KC
Sbjct: 429 --------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + R +FD + + +VSWT MI+G G
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+C + T+ V++ C + GK+VH + D + L+ Y CGD+
Sbjct: 91 MCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDL 150
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GR++FD M ++V W M+S A GD +
Sbjct: 151 KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G S+D+ + L+DL G A L+F I + +W +MI + G +A
Sbjct: 458 ILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEA 517
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ +N M G PD+ +F ++ AC S +E+G
Sbjct: 518 IATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 552
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + G + LL+ L+D +G A+ VF + VF+WN MI S+ Q
Sbjct: 83 RISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQ 142
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L+ M+ G P+ +TF V+KAC+ +A K+VH GF V + L+
Sbjct: 143 VFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLI 202
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
DLY K G ++ +K+F+ + ++ +V+W MISGL+ +G
Sbjct: 203 DLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNG 240
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++G ++ + L+ L S K A +FS + ++N +I L G S +A
Sbjct: 287 VIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + +PD T ++ AC + A+ KG ++H A+KAG S D+ ++ +L+DL
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y KC DV+ K F ++V W M L A G LD
Sbjct: 407 YSKCADVETAHKFFLTTETENIVLWNVM---LVAYGQLD 442
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 81/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+D+ + YG+ AL + ++ V +W MI +A
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G + D F I AC A+ +G+++H + AGF D+ + + L+ L
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG + F+K+ ++ +SW +++SGLA SG + A
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+S D +L LLDL S + A F ++ WN+M+ A + +
Sbjct: 389 IKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSF 448
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M G P++FT+P +++ C + A+ G+++H +K GF +++V S L+D+Y
Sbjct: 449 EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G + ++ ++ VVSWT MI+G
Sbjct: 509 AKYGQLALALRILRRLPEDDVVSWTAMIAG 538
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
YG + L+ L+DL S G + A VF+ I + TW MI L+ +G +A+LL
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M + P + V+ A E G+++H L +K GF + +V + L+ LY +
Sbjct: 249 FCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR 308
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++F M R VS+ ++ISGL G D A
Sbjct: 309 SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D + L+ L + G+ A L F +I + +WN ++ L G +AL ++
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVF 653
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ + FT+ I A + I++G+++H + +K G+ + V ++L+ LY K
Sbjct: 654 VRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKS 713
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + + F+ M R+V+SW MI+G + G
Sbjct: 714 GSISDAWREFNDMSERNVISWNAMITGYSQHG 745
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
L ++ + + L N M G R + + ++++ C+ S ++ + +H K+GF
Sbjct: 32 TLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDG 91
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
+ + +L+D Y + GD G K+FD+ RSV SW MI A
Sbjct: 92 EPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVA 136
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVF--SQIRC-PHVFTWNLMIRALTIDGS 59
+II G L +++ + + +G A VF S I C ++ WN ++RA G
Sbjct: 894 QIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGY 953
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL +Y M G D FTFP VI+AC + + + VHG V+ GF ++ V +
Sbjct: 954 CEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNE 1013
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LM +Y K G +D RK+F++M VRS VSW TM+SG A + D A
Sbjct: 1014 LMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGA 1058
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P++ TW ++ + G ++ + L+ M G V+ + A ++GK +
Sbjct: 1072 PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVI 1131
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
HG VK GF +FV+++L+ LY K G+V+ R +F +++ +++VSW +IS A G
Sbjct: 1132 HGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWC 1191
Query: 162 DAA 164
D A
Sbjct: 1192 DEA 1194
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 27 GKTDHALLVFSQIRC--------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
G D A +F Q+ P+V +W+ +I G +AL L+ M + +
Sbjct: 1189 GWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKAN 1248
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V+ C A+ G+E+HG V++ ++ V + L+++Y K G G +F+
Sbjct: 1249 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFE 1308
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K+ + ++SW TM++G G
Sbjct: 1309 KIENKDLISWNTMVAGYGIHG 1329
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + + L+ L+++ + G LVF +I + +WN M+ I G A
Sbjct: 1275 VVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENA 1334
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ ++ MI +GF PD TF V+ AC + + +G+E+ +K M + ++D
Sbjct: 1335 IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVD 1394
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
L + G + K+ M V
Sbjct: 1395 LLGRAGLLQEASKVVKSMPVE 1415
>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 774
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 32/185 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--------------RC-------- 41
I+R G+ +D L +LLDL G D+A VF ++ RC
Sbjct: 32 IVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEA 91
Query: 42 -------PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
P V +WN MI L G +AL++Y M+C+GF P +FT V+ AC
Sbjct: 92 CEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKV 151
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG-DVDGGRKMFDKMRVRSVVSWTTM 151
L G HG+AVK G +++FV + L+ +Y KCG VD G ++F+ + + VS+T +
Sbjct: 152 LDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAV 211
Query: 152 ISGLA 156
I GLA
Sbjct: 212 IGGLA 216
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ-IRCPHVFTWNLMIRALTIDGSSLQ 62
+IR +S + +V L+ + S K + + +F I + WN MI + +
Sbjct: 442 VIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTK 501
Query: 63 ALLLYNLM-----ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
AL+L+ M +C P++ +F V+ +C ++ G++ HGL VK+G+ D FV+
Sbjct: 502 ALILFRRMHQTAVLC----PNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVE 557
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L D+Y KCG++D R+ FD + ++ V W MI G +G D A
Sbjct: 558 TALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEA 604
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ +L C G + +FS I P V WN M+ + +A+ +
Sbjct: 345 GFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNF 404
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PDK T ++ +C +E GK++HG+ ++ S++ + S L+ +Y +C
Sbjct: 405 RQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSEC 464
Query: 128 GDVDGGRKMFDK-MRVRSVVSWTTMISGL 155
++ +FD + + W +MISG
Sbjct: 465 EKMEISECIFDDCINELDIACWNSMISGF 493
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
Query: 5 IRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL + + LL + C F D+ + VF + P+ ++ +I L + L
Sbjct: 165 VKTGLDKNIFVGNALLSMYAKCGFI--VDYGVRVFESLSQPNEVSYTAVIGGLARENKVL 222
Query: 62 QALLLYNLMICNGFRPDKFTFPFVI------KACIASLAI---EKGKEVHGLAVKAGFSR 112
+A+ ++ LM G + D ++ + C + I E GK++H LA++ GF
Sbjct: 223 EAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGG 282
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D+ + ++L+++Y K D++G +F +M +VVSW MI G
Sbjct: 283 DLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFG 326
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
GK +HG V+ G D ++ + L+DLY++CGD D RK+FD+M VR V SW ++
Sbjct: 25 GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84
Query: 158 SGDLDAA 164
GDL A
Sbjct: 85 VGDLGEA 91
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +D + L D+ G+ D A F + + WN MI +G +A
Sbjct: 545 VVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEA 604
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-------VHGLAVKAGFSRDMFV 116
+ LY MI +G +PD TF V+ AC S +E G E +HG+ + D ++
Sbjct: 605 VGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPEL----DHYI 660
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
++D + G ++ K+ + + S V W ++S GD+ A
Sbjct: 661 --CIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLA 707
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 35/152 (23%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G D L LL++ + + A L+F+++ +V +WN+MI + S +++
Sbjct: 276 LRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSV 335
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M +GF+P++ T V+ AC S
Sbjct: 336 EFLTRMRDSGFQPNEVTCISVLGACFRS-------------------------------- 363
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
GDV+ GR++F + SV +W M+SG +
Sbjct: 364 ---GDVETGRRIFSSIPQPSVSAWNAMLSGYS 392
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 86/155 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+RYG ++ + +LD+ + + A L+F + + +WN +I G +A
Sbjct: 145 LRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAF 204
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M+ +P FT+ V+ AC + ++E+GK VH L +K G FV +TL+D+Y
Sbjct: 205 CLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMY 264
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G ++ +K+FD++ R VVSW +M++G + G
Sbjct: 265 AKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHG 299
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+D ++ LL+L + G +A +F ++ V TW +I + ALLL M
Sbjct: 48 DDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEM 107
Query: 71 ICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+ G +P++FT ++KA + S + +G+++HGL ++ G+ +++V ++D+Y +C
Sbjct: 108 LRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCH 167
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ + +FD M ++ VSW +I+G A G D A
Sbjct: 168 HLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKA 203
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++K C + +GK +H L + + F D+ +Q+TL++LY KCGD+ RK+FD+M R
Sbjct: 21 LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80
Query: 145 VVSWTTMISGLA 156
VV+WT +I+G +
Sbjct: 81 VVTWTALITGYS 92
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++G + LLD+ + G + A VF ++ V +WN M+ + G A
Sbjct: 245 MIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVA 304
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M+ P+ TF V+ AC + +++G+ + K + T++DL
Sbjct: 305 LQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDL 364
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
+ G +D + +M ++ + W ++
Sbjct: 365 LGRAGHLDRAIQFISEMPIKPTAAVWGALLGA 396
>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Brachypodium distachyon]
Length = 779
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQ 62
+IR+G+ + L L+++ S G D A VF TWN MI T G Q
Sbjct: 439 LIRHGIEGEGL-ESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQ 497
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+L + M+ G P T V+ AC ++ GK++H A++ ++FV + L+
Sbjct: 498 AVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGTALV 557
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KCG++ +FD+M +S V++TTMISGL G D A
Sbjct: 558 DMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLGQHGFGDRA 600
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+ + S G A +F Q+ + +WN M+ A + + LLL M +
Sbjct: 348 ILGNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKS 407
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
GF D T V+ A + ++ GK+ HG ++ G + ++S L+++Y K G +D
Sbjct: 408 GFVADAVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGEG-LESYLINMYSKSGHIDMA 466
Query: 134 RKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
+++FD R V+W MI+G SG + A
Sbjct: 467 QRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQA 498
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Query: 4 IIRYGLS--NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+I++G+ +D +V + + S G A +VF ++ WN MI +G
Sbjct: 233 LIKHGVEYVSDLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFS 292
Query: 62 QALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQST 119
+A+ L+ +M G D TF I A S + G+++HG +K S + + +
Sbjct: 293 EAMDLFIQIMGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNA 352
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
L+ +Y +CG+V +FD++ + +VSW TM++
Sbjct: 353 LVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAF 388
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 9 LSNDQLLVRKLLDL---CSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
L + +L LL+L C+ Y G D +F +V +WN ++ G +A
Sbjct: 133 LPDTAVLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQSTLM 121
L ++ M+ +G RP +F V A AS ++G+ +K G + D+FV S+ +
Sbjct: 193 LEMFMRMLEDGIRPTPVSFVNVFPAA-ASDDPSWPFFLYGMLIKHGVEYVSDLFVVSSAI 251
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ + GDV R +FD +++ W TMI+G +G A
Sbjct: 252 AMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEA 294
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHA--LLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
S QL ++ LC G+ +HA LL+ + R P N+++ A AL LY
Sbjct: 27 SRTQLAATQVKKLCK-QGRLEHARRLLLDALPRPPPTLLCNVLLIAYVAGALPDHALGLY 85
Query: 68 NLMICNGFRP----DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS--RDMFVQSTLM 121
++ + RP D +T+ + AC S + G+ VH ++ S ++++L+
Sbjct: 86 GVL-NHAARPPPRSDHYTYSCALTACARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLL 144
Query: 122 DLYLKC-----GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+LY C G VD R++FD R+VVSW T++ +G
Sbjct: 145 NLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTG 187
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R+ L + + L+D+ S G+ A VF ++ T+ MI L G +AL
Sbjct: 542 LRHSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLGQHGFGDRAL 601
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M NG +PD TF I AC S +++G ++ G S ++DL
Sbjct: 602 FLFYSMQDNGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMETFGLSATPQHHCCIVDLL 661
Query: 125 LKCGDVDGGRKMFDKMRVRS--VVSWTTMISGLAASG 159
K G V+ + + + W ++++ A G
Sbjct: 662 AKAGRVEEAYDFVESLGEDGNFIAIWGSLLASCKAQG 698
>gi|302810986|ref|XP_002987183.1| hypothetical protein SELMODRAFT_21339 [Selaginella moellendorffii]
gi|300145080|gb|EFJ11759.1| hypothetical protein SELMODRAFT_21339 [Selaginella moellendorffii]
Length = 475
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G+ D+ L L++ G D A VF I+ +V++W +MI A +G +
Sbjct: 4 RMVSSGIHRDRFLCNNLVEAYGRCGDLDSATAVFLTIQDRNVYSWTIMIVASVQNGDGVL 63
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L M C G PD+ TF ++ A + +G+E+H G ++ V + L++
Sbjct: 64 ALRLLREMDCEGVAPDEMTFSSILGALSGKRDLRQGREIHARLRSGGHESNLVVATALIN 123
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y CG + R++F K R VVS ++M++ LA SG
Sbjct: 124 MYSSCGSIAEAREVFSKTNSRDVVSMSSMVAALAGSG 160
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++II GL ++ L L+ + + A VF I + +WN M+ A +G S
Sbjct: 206 ERIIAGGLGSNVFLANSLVTMYGRSSEVAEAEAVFRSILRRSLTSWNSMLAAYAQNGHSS 265
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL ++ M G D+FTF ++ AC + ++ G+++H G + FV + L+
Sbjct: 266 VALDVHVRMDHEGVASDEFTFVTLLDACAMAGTLQLGRQIHDRTDAMGLMTNGFVATALL 325
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y K G + R +FD+ SVV+WT MI+ A G
Sbjct: 326 DMYGKRGSLGEARAVFDRHCTGSVVAWTAMIASYAQHG 363
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G ++ ++ L+++ S G A VFS+ V + + M+ AL G +A+LL+
Sbjct: 110 GHESNLVVATALINMYSSCGSIAEAREVFSKTNSRDVVSMSSMVAALAGSGHGGEAILLF 169
Query: 68 NLMICNGFRPDKFTFPFVIKACI---ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M G ++ TF + AC SLA+ GK++H + G ++F+ ++L+ +Y
Sbjct: 170 RRMDLEGIASNEITFVAALVACCDCPGSLAL--GKQIHERIIAGGLGSNVFLANSLVTMY 227
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +V +F + RS+ SW +M++ A +G
Sbjct: 228 GRSSEVAEAEAVFRSILRRSLTSWNSMLAAYAQNG 262
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+H V +G RD F+ + L++ Y +CGD+D +F ++ R+V SWT MI +GD
Sbjct: 1 IHARMVSSGIHRDRFLCNNLVEAYGRCGDLDSATAVFLTIQDRNVYSWTIMIVASVQNGD 60
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + + LLD+ G A VF + V W MI + G S +AL LY
Sbjct: 313 GLMTNGFVATALLDMYGKRGSLGEARAVFDRHCTGSVVAWTAMIASYAQHGRSAEALELY 372
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
M G P+ TF ++ AC +++G E
Sbjct: 373 GGMALEGLAPNSVTFVNILSACSYYGMVDQGWE 405
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D + G+ D +F + +W ++ A + AL +++ M G
Sbjct: 404 LCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMG 463
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
F+P++ TF V+ +C + ++E G++VH L K GF+RD V+S L+D+Y KCG V
Sbjct: 464 FQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAI 523
Query: 135 KMFDKMRVRSVVSWTTMISGLAASG 159
K+F+ ++ V+SWT MISG A G
Sbjct: 524 KVFESLKDPDVISWTAMISGYAQHG 548
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
C WN MI TI G +A+LL+ M N + D +T+ + + ++E K+
Sbjct: 330 CGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQ 389
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+HG+ K+G S + + + LMD Y KCG++D RK+FD + +SWTT+++ + S +
Sbjct: 390 LHGMIWKSG-SIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSE 448
Query: 161 LDAA 164
+ A
Sbjct: 449 WEDA 452
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
CS +G A VF +I VF+W +++ T +G + + ++ PD++
Sbjct: 111 CSDFGS---ARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYAL 167
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
I+ACI +I G+ VH + GFS FV ++L+ +Y K G + K+F+ +
Sbjct: 168 SAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLEN 227
Query: 143 RSVVSWTTMISGLAASG 159
R+ VSW MISG ++G
Sbjct: 228 RNQVSWNAMISGFVSNG 244
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I G S+ + LL + + G+ + VF+ + + +WN MI +G +
Sbjct: 189 QVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAE 248
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A + M+ RP+ F V KA +EKG+ ++ +A + G ++ V + L+D
Sbjct: 249 AYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALID 308
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS--WTTMISGLAASGDLDAA 164
++ KCG V +F V+ W MISG SG + A
Sbjct: 309 MFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEA 352
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G + D+ + L+D+ + G A+ VF ++ P V +W MI G + AL
Sbjct: 496 KTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDALE 555
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M P+ TF ++ AC +++G + H + + G ++ + ++D+
Sbjct: 556 LFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDIL 615
Query: 125 LKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G + K KM + W+T++ G++ A
Sbjct: 616 GRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLA 656
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 95 IEKGKEVHGLAVKAGF-SRDMFVQ-STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
++K K +HG +K + + V + L+ Y KC D R++FD++ +SV SWT ++
Sbjct: 77 LKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLM 136
Query: 153 SGLAASG 159
G +G
Sbjct: 137 VGATENG 143
>gi|125525852|gb|EAY73966.1| hypothetical protein OsI_01850 [Oryza sativa Indica Group]
Length = 641
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLL 66
G +D + L+ + +G D A VF + + +WN ++ A + A+ +
Sbjct: 130 GFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQV 189
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M+ +G +P +F F V+ AC S IE G++VHG+ V+ G+ +D+F + L+D+Y+K
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVK 249
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G VD +F+KM VVSW +ISG +G
Sbjct: 250 MGRVDIASLIFEKMPDSDVVSWNALISGCVLNG 282
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D L+D+ G+ D A L+F ++ V +WN +I ++G +A
Sbjct: 228 VVRMGYDKDVFTANALVDMYVKMGRVDIASLIFEKMPDSDVVSWNALISGCVLNGHDHRA 287
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L M +G P+ FT ++KAC + A + G+++HG +K D ++ L+D+
Sbjct: 288 IELLLQMKSSGLVPNVFTLSSILKACAGTGAFDLGRQIHGFMIKVNADSDDYIGVGLVDM 347
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K +D RK+FD M R ++ +ISG + G D A
Sbjct: 348 YAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L SFY K A VF +I P +W+ ++ A + +G A+ ++ M G +
Sbjct: 43 LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F+ P V+K C+ + G +VH +A+ GF D+FV + L+ +Y G +D R++FD
Sbjct: 103 EFSLPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFD 159
Query: 139 KM-RVRSVVSWTTMISG 154
+ R+ VSW ++S
Sbjct: 160 EAGSERNAVSWNGLMSA 176
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ +D + L+D+ + D A VF + + N +I + G +A
Sbjct: 329 MIKVNADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ + G ++ T V+K+ + A ++VH LA K GF D V + L+D
Sbjct: 389 LSLFYELRKEGLGVNRTTLTAVLKSTASLEAASTTRQVHALAEKIGFIFDAHVVNGLIDS 448
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y KC + ++F++ ++++T+MI+ L+
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIAFTSMITALS 481
>gi|357154306|ref|XP_003576739.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Brachypodium distachyon]
Length = 620
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC-NGFR 76
L+D G + A ++F + +W MI +GS+ +AL L+ M+ +
Sbjct: 271 SLIDAYMRLGHIEQAAVLFRIAPATNAISWTAMIGGFARNGSADEALALFVKMLTQDDIH 330
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD FTF V+ AC + ++ G+ +HG A + G++ ++V ++LMD+Y KCGDV+G +
Sbjct: 331 PDSFTFGAVLHACATASSLASGRMIHGCAFRTGYASYLYVANSLMDMYAKCGDVEGATNV 390
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
F + + +VSW TM+ G A +G
Sbjct: 391 FHAVLKKDLVSWNTMLFGFAING 413
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 13 QLLVRKLLDLCSFY------GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
++ R L CS G+ A +F ++ + WN ++ + G++ Q LL+
Sbjct: 148 EMPERNALSWCSLLHAYVASGQMKVAQELFDEMPIGNNVAWNTLLMGYSRSGNAKQCLLV 207
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-----------SRDMF 115
+N M +G D T ++ AC G +H + V++G+ SR +
Sbjct: 208 FNKMRMSGLCCDDATLCILVDACAELPYPPTGFAIHKIVVQSGWNAIPEIFESMESRTIV 267
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++L+D Y++ G ++ +F + +SWT MI G A +G D A
Sbjct: 268 SWNSLIDAYMRLGHIEQAAVLFRIAPATNAISWTAMIGGFARNGSADEA 316
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G ++ + L+D+ + G + A VF + + +WN M+ I+G + +AL
Sbjct: 361 RTGYASYLYVANSLMDMYAKCGDVEGATNVFHAVLKKDLVSWNTMLFGFAINGWAKEALE 420
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-------EVHGLAVKAGFSRDMFVQS 118
+Y M+ + PD+ TF ++ AC S +E+G+ VHGL S
Sbjct: 421 VYRRMLSHDACPDEVTFAGLLTACSHSGLLEQGRTFFESMVSVHGLKPTPEH------LS 474
Query: 119 TLMDLYLKCGDVDGGRKMFDK 139
++D+Y + G++ +M D+
Sbjct: 475 CVLDMYARSGNIAAAIEMLDR 495
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF + C WN M+ A G AL L+ PD F+ + A +
Sbjct: 48 VFDAMPCRDAVAWNAMLTAYARAGQPRAALGLF----VRAHAPDAFSLTAALSAAADLRS 103
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ G ++H ++ G + V + L+ +Y +C D + F +M R+ +SW +++
Sbjct: 104 PDAGAQLHARLLRLGLRAPLPVGNALVAMYARCARADDAARAFREMPERNALSWCSLLHA 163
Query: 155 LAASGDLDAA 164
ASG + A
Sbjct: 164 YVASGQMKVA 173
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 93/160 (58%), Gaps = 12/160 (7%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTD-----HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
G +D L+ L+ SF+ + H+ L+F+QI P +F +NL+IRA ++ +
Sbjct: 5 GRHHDPFLMTPLI---SFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHN 61
Query: 63 ALLLYNLMICNG--FRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQST 119
AL LY M+ + PD FTFPF++K+C A L++ + G +VH K+GF ++FV +
Sbjct: 62 ALSLYKKMLSSSPPIFPDTFTFPFLLKSC-AKLSLPRLGLQVHTHVFKSGFESNVFVVNA 120
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+ +Y GD ++FD+ VR VS+ T+I+GL +G
Sbjct: 121 LLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAG 160
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 38/193 (19%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + G ++ +V LL + +G +A VF + ++N +I L G +
Sbjct: 105 HVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGC 164
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK--GKEVHGLAVK--AGFSRDMFVQS 118
++ ++ M PD++TF ++ AC SL ++ G+ VHGL + F + + +
Sbjct: 165 SMRIFAEMRGGFVEPDEYTFVALLSAC--SLLEDRGIGRVVHGLVYRKLGCFGENELLVN 222
Query: 119 TLMDLYLKC--------------------------------GDVDGGRKMFDKMRVRSVV 146
L+D+Y KC G+V+ R++FD+M R VV
Sbjct: 223 ALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVV 282
Query: 147 SWTTMISGLAASG 159
SWT MISG +G
Sbjct: 283 SWTAMISGYCHAG 295
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
++++R G N + V L S Y G+ + A +F Q+ V +W MI G
Sbjct: 238 ERVVRNG--NGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAG 295
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL----AVKAGFSRDM 114
+AL L+ + G PD+ + AC A+E G+ +H + + G +R
Sbjct: 296 CFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGF 355
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASG 159
++D+Y KCG ++ +F K +++ + +++SGLA G
Sbjct: 356 --TCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHG 400
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-H 102
F +N ++ L G A+ L+ M G PD+ T+ ++ AC S ++ GK +
Sbjct: 386 TFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFE 445
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
+ + G + M ++DL + G ++ + M ++ V W ++S GD+
Sbjct: 446 SMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIWRALLSACKVDGDV 505
Query: 162 DAA 164
+ A
Sbjct: 506 ELA 508
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 84/154 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ S + + LLD+ S G + A VF ++ + +W I A +G A+
Sbjct: 598 VKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAI 657
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G RPD +T ++ AC S +++KG++VH +K G ++ V + L+++Y
Sbjct: 658 GLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMY 717
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG V+ R +F K+ V+ +VSW TMI G + +
Sbjct: 718 AKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 751
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G+ ++ + L+++ + G + A LVFS+I + +WN MI + + +A
Sbjct: 698 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ L + F+PD T V+ AC A++KG+E+HG ++ G+ D+ V L+D+
Sbjct: 758 LELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 816
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + + +FD + + ++SWT MI+G G
Sbjct: 817 YAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 852
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++ +V L+ +G + A +F ++ P V +WN MI ++G S
Sbjct: 496 VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNG 555
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M+ G D T V+ A + G+ +HG VKA FS ++ +TL+D+
Sbjct: 556 LEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDM 615
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+++G ++F KM ++VSWT+ I+ G
Sbjct: 616 YSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREG 651
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II G+S D+ L KL+ + G +F +I VF WNL++ G+ ++
Sbjct: 395 IISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRES 454
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G + +TF V+K C A+L +++ K VHG +K GF + V ++L+
Sbjct: 455 VSLFKKMQKLGVVGNCYTFTCVLK-CFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 513
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G V+ +FD++ VVSW +MI+G +G
Sbjct: 514 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 550
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V++ C ++E GK VH + + G S D + + L+ +Y+ CGD+ GRK+FDK+
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434
Query: 145 VVSWTTMISGLAASGDL 161
V W ++S A G+
Sbjct: 435 VFLWNLLMSEYAKIGNF 451
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +D + L+D+ + G A L+F I + +W +MI + G +A
Sbjct: 798 ILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEA 857
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ +N M G PD+ +F ++ AC S + +G K + + + G + + ++D
Sbjct: 858 ISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVD 917
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G++ K + M ++ + W ++SG D+ A
Sbjct: 918 LLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 960
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 82/157 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + +L KLL + G A +F Q+R WN MIR T+ G ALL Y
Sbjct: 76 GIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFY 135
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ G PDK+TFP+VIKAC ++ G+ VH GF D+FV S+L+ Y +
Sbjct: 136 FKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSEN 195
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + R +FD+M + V W M++G +GD D A
Sbjct: 196 GCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNA 232
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ GL D + LL + + G A +F + + TWN MI +G +A
Sbjct: 274 VVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEA 333
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ MI G +PD TF + + +GKE+H ++ G S D+F++S L+D+
Sbjct: 334 SCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDI 393
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC DV+ K+FD+ +V T MISG +G
Sbjct: 394 YFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNG 429
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I++ G + ++D+ + GK D A F I WN MI + + +G +
Sbjct: 475 HILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEE 534
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G + D + + AC A+ GKE+H ++ F D+F +S L+D
Sbjct: 535 AIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALID 594
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y KCG++D ++FD M ++ VSW ++I+ G L
Sbjct: 595 MYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYGNHGRL 633
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI G D + L+ S G A +F ++ WN+M+ +G
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M P+ TF V+ C + + I G ++HGL V +G D V +TL+
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLA 291
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + R++FD M +V+W MISG +G +D A
Sbjct: 292 MYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEA 333
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G+S D L L+D+ + A +F Q + MI ++G + A
Sbjct: 375 IIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNA 434
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ ++ R + T V+ AC A+ GKE+HG +K G +V S +MD+
Sbjct: 435 LEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDM 494
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +D + F + + V W +MI+ + +G + A
Sbjct: 495 YAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEA 535
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +D L+D+ S G D A VF + + +WN +I A G +
Sbjct: 577 MMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYGNHGRLKDS 636
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M+ +G +PD TF +I AC + +++G + + G M + ++D
Sbjct: 637 LNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVD 696
Query: 123 LYLKCGDVDGGRKMFDKM 140
L+ + G ++ M + M
Sbjct: 697 LFGRAGRLNEAFGMINSM 714
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 30 DHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
DHA VF+ + H F WN ++R L S ++LL ++ M PD +TFP V+
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVR-LHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC + G VHG AV+ G D+F ++ L+ Y + GD GRK+FD VR +V
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLV 182
Query: 147 SWTTMISGLAASGDLDAA 164
SW +M++G G++D A
Sbjct: 183 SWNSMVAGYVGCGEVDLA 200
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
++D + +G+ D A ++F ++ +V +W+++I G +AL + M+ G +PD
Sbjct: 250 MIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPD 309
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + AC A+E+G+ +H K D+ VQ+ L+D+Y+KCG +D + +F+
Sbjct: 310 RVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFE 369
Query: 139 KMRVRSVVSWTTMISGLAASG-DLDA 163
M +SVV+W MI GL G LDA
Sbjct: 370 SMPKKSVVTWNVMIVGLGTHGYGLDA 395
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ G+ D A L+F + V TWN+MI L G L A+ L+N M
Sbjct: 344 DVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQME 403
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
D + V+ +C + + +G + + + G + L+DL + G V
Sbjct: 404 TERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRV 463
Query: 131 DGGRKMFDKMRVRSVVS-WTTMIS 153
D R + M + W ++++
Sbjct: 464 DQARNTIETMPMEPTPELWGSLLA 487
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ ++++D Y + G +D R +F++M R+V+SW+ +I G G+ + A
Sbjct: 242 RDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEA 294
>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 729
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+DL G T HA +F Q+ V +WN++I + +G A+ L+ M+ F+P+
Sbjct: 97 LIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLRENFKPN 156
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ T ++ +C I +G+ +HG +KAGF D + + LM +Y KC D++ + +FD
Sbjct: 157 QTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQLLFD 216
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+M +SVVSW TMI +G D A
Sbjct: 217 EMDEKSVVSWNTMIGVYGQNGLFDKA 242
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GLSND L+ L+ L S + + + AL +F +R + TWN MI G S A+
Sbjct: 380 VKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAM 439
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G +PD T ++ C + G+ +H ++ + F+ + L+D+Y
Sbjct: 440 ELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMY 499
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D K+F ++ + +W +ISG + G
Sbjct: 500 SKCGRLDYAEKVFYNIKDPCLATWNAIISGYSLYG 534
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS--------LAIEKGK 99
NL + ++ AL+++ ++ P++FTF +IKA ++S A + +
Sbjct: 17 NLSLFHSLFQNATSPALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQAR 76
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++ +K G ++ + V ++L+DLY+K G R MFD+M R VVSW +I G + +G
Sbjct: 77 QIQTQCLKRGVNQFIHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNG 136
Query: 160 DLDAA 164
L A
Sbjct: 137 YLYHA 141
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ G D L L+ S Y K D + L+F ++ V +WN MI +G
Sbjct: 184 IKAGFGLDSHLNNALM---SMYAKCDDLEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFD 240
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+L + M+ GF P T ++ A + VH VK GF+ D V ++L+
Sbjct: 241 KAILYFKEMLKEGFHPSSVTIMNLVSANAFP------ENVHCYVVKCGFTNDASVVTSLV 294
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY K G + ++++ + +++ T +IS + GD+++A
Sbjct: 295 CLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEKGDIESA 337
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +ND +V L+ L + G T+ A ++ + T +I + + G A
Sbjct: 278 VVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEKGDIESA 337
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + I +PD V+ G HG VK+G S D V + L+ L
Sbjct: 338 VECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSGLSNDCLVANGLISL 397
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y + +++ +F MR + +++W +MISG +G
Sbjct: 398 YSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAG 433
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R + + + L+D+ S G+ D+A VF I+ P + TWN +I ++ G A
Sbjct: 480 ILRNNVRVEDFIGTALIDMYSKCGRLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTA 539
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
Y+ + G +PDK TF V+ AC + G E + K
Sbjct: 540 FGCYSKLQEQGLKPDKITFLGVLAACTHGGLVYLGLEYFNIMTK 583
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQALLLYN 68
SN +L LL+L + G+ A F ++R P +W +I A G L+A+ +
Sbjct: 108 SNPHVLT-SLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVAR 166
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+G RPD FT V+ AC + G+EV A K G + ++FV + +DLY+KCG
Sbjct: 167 SAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCG 226
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++D R +FDKM+ + VV+W M+ G A++G
Sbjct: 227 EMDKARGVFDKMKNKDVVAWGAMVGGYASNG 257
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G++ + + +DL G+ D A VF +++ V W M+ +G +AL
Sbjct: 205 KEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALE 264
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M G RPD +T + AC A++ G+ V G+ + + + L+D+Y
Sbjct: 265 LFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYA 324
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +F KMR R ++ W MI GL +G
Sbjct: 325 KCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTG 358
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK-ACIASLAIEKGKEVHGLAVKAG 109
IRAL+ G L L ++ + P TFPF IK A + G ++H ++K
Sbjct: 50 IRALSSSGLHLHVLRFHSHLP----NPSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLP 105
Query: 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASG 159
+ V ++L++LY +CG + +K FD+MR S VSWT +I+ +G
Sbjct: 106 SHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYMDAG 156
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
+ +L L+D+ + G T A +VF ++R + WN MI L + G A L M
Sbjct: 312 NPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMK 371
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM-DLYLKCGDV 130
+G + TF ++ +C + ++ G+ + R +M DL + G +
Sbjct: 372 KSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLL 431
Query: 131 DGGRKMFDKMRVRS-VVSWTTMISG 154
++ M + + V W ++ G
Sbjct: 432 QEAHQLIQDMPMEANAVVWGALLGG 456
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + ++ L+D+ + G T+ A F+ ++ P + W MI +G + A
Sbjct: 339 LLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDA 398
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G P++ T V+KAC A ++G+++H +K G ++ + S L +
Sbjct: 399 LSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTM 458
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG+++ G +F +M R ++SW MISGL+ +G
Sbjct: 459 YAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNG 494
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 76/138 (55%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D +L VF + TW+ MI G S +AL L++ M G P +FT V+
Sbjct: 261 GSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVL 320
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC + A+E+GK+VH +K GF +++ + L+D+Y K G + RK F+ ++ +V
Sbjct: 321 NACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLV 380
Query: 147 SWTTMISGLAASGDLDAA 164
WT+MI+G +G+ + A
Sbjct: 381 LWTSMIAGYVQNGENEDA 398
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL--LYNLMICNGFR 76
L +FY K H A LVF +I V +WN +I + G + + + L+ M +
Sbjct: 49 LINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNIL 108
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P+ TF + A +I G++ H +A+K D+FV S+L+++Y K G + R++
Sbjct: 109 PNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREV 168
Query: 137 FDKMRVRSVVSWTTMISGLA 156
FD+M R+ V+W TMISG A
Sbjct: 169 FDRMPERNEVTWATMISGYA 188
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + LL++ G A VF ++ + TW MI I + +A ++ LM
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
++F F V+ A ++ GK++H LAVK G + + + L+ +Y KCG +D
Sbjct: 205 REEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLD 264
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++F+ ++ ++W+ MI+G A SGD A
Sbjct: 265 DSLQVFEMSNDKNSITWSAMITGYAQSGDSHKA 297
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+YGL + + L + + G + +VF ++ + +WN MI L+ +G +
Sbjct: 439 RTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKE 498
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC 89
AL L+ M +PD TF V+ AC
Sbjct: 499 ALELFEEMRQQDTKPDDVTFVNVLSAC 525
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 94 AIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+++KG+ +H +K A S +++ ++L++ Y KC + + +FD++ + V+SW +I
Sbjct: 22 SLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLI 81
Query: 153 SGLAASG 159
+G + G
Sbjct: 82 NGYSQQG 88
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 30 DHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
DHA VF+ + H F WN ++R L S ++LL ++ M PD +TFP V+
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVR-LHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC + G VHG AV+ G D+F ++ L+ Y + GD GRK+FD VR +V
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLV 182
Query: 147 SWTTMISGLAASGDLDAA 164
SW +M++G G++D A
Sbjct: 183 SWNSMVAGYVGCGEVDLA 200
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
++D + +G+ D A ++F ++ +V +W+++I G +AL + M+ G +PD
Sbjct: 250 MIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPD 309
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + AC A+E+G+ +H K D+ VQ+ L+D+Y+KCG +D + +F+
Sbjct: 310 RVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFE 369
Query: 139 KMRVRSVVSWTTMISGLAASG-DLDA 163
M +SVV+W MI GL G LDA
Sbjct: 370 SMPKKSVVTWNVMIVGLGTHGYGLDA 395
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ G+ D A L+F + V TWN+MI L G L A+ L+N M
Sbjct: 344 DVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQME 403
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
D + V+ +C + + +G + + + G + L+DL + G V
Sbjct: 404 TERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRV 463
Query: 131 DGGRKMFDKMRVRSVVS-WTTMIS 153
D R + M + W ++++
Sbjct: 464 DQARNTIETMPMEPTPELWGSLLA 487
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ ++++D Y + G +D R +F++M R+V+SW+ +I G G+ + A
Sbjct: 242 RDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEA 294
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+YG +D L +L++ G+ + A +F + V +WN ++ G+ +
Sbjct: 172 VIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREV 231
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L M +G PD+ TF ++ A + GK VHG ++AG +D ++++L+ +
Sbjct: 232 LQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGM 291
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
YLKCG+V+ ++F+ M + V+SWT MISGL + D A
Sbjct: 292 YLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMA 332
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + Y K H + VF ++ + +WN ++ +G +ALLL+N M RPD
Sbjct: 389 LVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPD 448
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T +++AC + A+ +GK +H K+ + + + L+D+Y KCGD+ +K FD
Sbjct: 449 SITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFD 508
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+M + +VSW+++I+G + G + A
Sbjct: 509 RMPQQDLVSWSSIIAGYGSHGKGETA 534
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P ++N +I L+ G+ LL Y+ M+ PD TFP ++KAC + G
Sbjct: 11 PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSF 70
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
H + G+S D ++ ++L++ Y K G RK+FD M R+VV WTTMI +G+
Sbjct: 71 HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130
Query: 162 DAA 164
D A
Sbjct: 131 DVA 133
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q++I G S+D + L++ S +G A VF + +V W MI T G
Sbjct: 72 QRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A +YN+M G +P T ++ + + ++ +H ++ GF D+ + ++++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSML 188
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
++Y KCG V+ + +F+ M R V+SW +++SG A G++
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNI 228
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL D + L+ + G + A +F + V +W MI L + + A
Sbjct: 273 ILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMA 332
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M+ + P T V+ AC + G VHG ++ D+ Q++L+ +
Sbjct: 333 VTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTM 392
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
Y KCG ++ +FD+M R +VSW ++SG A +G L
Sbjct: 393 YAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHL 430
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
L+ L+D+ S G A F ++ + +W+ +I G AL +Y+ +
Sbjct: 485 LIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHT 544
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G +P+ + ++ AC + +++G H + G + ++ ++DL + G V+
Sbjct: 545 GIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEE 604
Query: 133 GRKMFDKM 140
+ +M
Sbjct: 605 AYSFYKRM 612
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 89/157 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ G D ++ L+++ G + A VF +++ + +WN+MI ++G +
Sbjct: 232 EIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHE 291
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY + GF+ K TF ++ AC + A+ +G+ VH ++ G ++ V + L++
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG ++ RK+F+ M+ R V+W+T+I A++G
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNG 388
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL + Q L L+ + + +G A +F ++ +WN +I A + G
Sbjct: 131 NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWS 190
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL ++ M C+ +P+ T+ VI + +G+++H V GF D+ V + L+
Sbjct: 191 GALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALI 249
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y KCG R++FDKM+ R +VSW MI +GD A
Sbjct: 250 NMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEA 292
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 22 LCSFYGKTDH---ALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76
L S YGK D A VF + R +V +WN MI A +G S +AL+LY M G
Sbjct: 48 LISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLG 107
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D TF V+ AC +SLA +G+E+H +G + + L+ +Y + G V ++M
Sbjct: 108 TDHVTFVSVLGAC-SSLA--QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRM 164
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F ++ R SW +I + SGD A
Sbjct: 165 FQSLQTRDETSWNAVILAHSQSGDWSGA 192
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 26 YGK-TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFP 83
YGK A VF ++ +WN MI +G ++ A+ ++ M G +PD TF
Sbjct: 389 YGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFI 448
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
V++AC + + + K +H ++ ++ V +TL+++Y +CG ++ ++F + +
Sbjct: 449 AVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEK 508
Query: 144 SVVSWTTMISGLAASG 159
+VVSWT M++ + G
Sbjct: 509 TVVSWTAMVAAFSQYG 524
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD TF V+ +C + + +G+ +H + F RD V + L+ +Y KC + R
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63
Query: 136 MFDKM--RVRSVVSWTTMISGLAASG 159
+F+ M R R+VVSW MI+ A +G
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNG 89
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I L ++ ++ L+++ + G + A +F+ + V +W M+ A + G +
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMF 115
AL L+ M G +PD T+ ++ C ++E+G E+H LA A D F
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTA----DHF 584
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ ++DL + G + +++ + M V+W T ++ G L+
Sbjct: 585 --AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLE 630
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ YG S L+ KL+ L + L+F + P F +N +I++ + L
Sbjct: 34 VTSYGRSRS--LLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHC 91
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y M+ + P +TF VIK+C A++ GK VH AV +GF D +VQ+ L+
Sbjct: 92 VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTF 151
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGD++ R++FD+M +SVV+W +++SG +G
Sbjct: 152 YSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNG 187
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 3/141 (2%)
Query: 22 LCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY G + A VF ++ V WN ++ +G + A+ ++ M +GF PD
Sbjct: 148 LVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPD 207
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF ++ AC + AI G VH V G ++ + + L++LY +CGDV R++FD
Sbjct: 208 SATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFD 267
Query: 139 KMRVRSVVSWTTMISGLAASG 159
KM+ +V +WT MIS G
Sbjct: 268 KMKETNVAAWTAMISAYGTHG 288
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q I+ GL + L L++L S G A VF +++ +V W MI A G
Sbjct: 232 QYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGK 291
Query: 62 QALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVH 102
QA+ L+N M + G P+ TF V+ AC + +E G+ V+
Sbjct: 292 QAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVY 333
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II+YG+S D+ L+D+ S + A LVF +I+ + W M T + ++
Sbjct: 470 IIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEES 529
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY + + +P++FTF VI A ++ G++ H +K GF D FV +TL+D+
Sbjct: 530 LKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDM 589
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G ++ K F + W +MI+ A G+ + A
Sbjct: 590 YAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKA 630
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D + L+D + + D A L+F ++ FTW +I + G S +
Sbjct: 167 VVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVS 226
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ M PDK+ V+ AC+ +E GK++H +++G D+ + + +D
Sbjct: 227 LKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDF 286
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y KC V GRK+FD+M ++VVSWTT+I+G
Sbjct: 287 YFKCHKVQLGRKLFDRMVDKNVVSWTTVIAG 317
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 3 KIIRYGL-SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
KI+ +G +D LV LL S +HA +F + ++ TW+ M+ T L
Sbjct: 63 KIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCL 122
Query: 62 QALLLYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL+L+ + CN +P+++ V++AC + ++HGL VK G+ +D++V ++
Sbjct: 123 EALMLFVQFMRSCNE-KPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTS 181
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D Y K +D R +FD ++V++ +WTT+I+G + G
Sbjct: 182 LIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQG 221
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G+ D +V +D FY K L +F ++ +V +W +I +
Sbjct: 268 VLRSGIVMDVSMVNGFID---FYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFH 324
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL L+ M G+ PD F V+ +C + +A+EKG++VH A+K D FV++ L
Sbjct: 325 RDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGL 384
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+D+Y KC + RK+F+ M +VS+ MI G + L
Sbjct: 385 IDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKL 425
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I+ + ND + L+D+ Y K D A VF+ + + ++N MI +
Sbjct: 370 IKVNIDNDDFVKNGLIDM---YAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLC 426
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL L+ M + P F ++ + +E ++HGL +K G S D F S L+
Sbjct: 427 EALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALI 486
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KC V R +F++++ + +V WT M SG + + +
Sbjct: 487 DVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEES 529
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 1/162 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ G +D + L+D+ + G + A F WN MI G +
Sbjct: 569 NQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAE 628
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL ++ MI G +P+ TF V+ AC + ++ G + + G + ++
Sbjct: 629 KALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVCMV 688
Query: 122 DLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
L + G + ++ +KM ++ + V W +++S SG+++
Sbjct: 689 SLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVE 730
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G +D + L+D S G + A VF I + +W M+ + ++
Sbjct: 171 VYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEES 230
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ M GF+P+ FTF V+KAC+ GK VHG A K + ++FV L+DL
Sbjct: 231 LKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDL 290
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+K GDVD ++F++M V+ W+ MI+ A S + A
Sbjct: 291 YIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 87/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + + L+D+ + G+ +++L +FS+ +WN +I G+ +A
Sbjct: 373 VVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKA 432
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L+ M+ + + T+ V++AC A+E G ++H L+VK + ++ V + L+D+
Sbjct: 433 LILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDM 492
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG++ R +FD +R VSW MISG + G
Sbjct: 493 YAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHG 528
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 78/147 (53%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L+DL G D AL VF ++ V W+ MI S +A+ ++ M P
Sbjct: 286 ELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLP 345
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++FT +++AC + + ++ G ++H VK G ++FV + LMD+Y KCG ++ ++F
Sbjct: 346 NQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLF 405
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + VSW T+I G +G+ + A
Sbjct: 406 SESPNCTDVSWNTVIVGYVQAGNGEKA 432
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ L++ + G + F F V+K +++ + G VH K GF D FV + L+
Sbjct: 128 EAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALI 187
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
D Y CG + R++FD + + +VSWT M++
Sbjct: 188 DCYSVCGYAECARQVFDAIEYKDMVSWTGMVA 219
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ + + ++++CI + GK +H +K G D+F + L++ Y+K + K+F
Sbjct: 43 NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102
Query: 138 DKMRVRSVVSWTTMISGLA 156
D+M R+ VS+ T+I G +
Sbjct: 103 DEMPDRNTVSFVTLIQGYS 121
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A LVF +R +WN MI ++ G +AL + M+ +PD
Sbjct: 489 LIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPD 548
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL-KCGDVDGGRKMF 137
K TF ++ AC + +++G+ V+ T M L + G +D K+
Sbjct: 549 KVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLV 608
Query: 138 DKMRVR-SVVSWTTMISGLAASGDLD 162
++ SV+ W ++S D++
Sbjct: 609 HEIPFEPSVMVWRALLSACVIHNDVE 634
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 82/157 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + +L KLL + G A +F Q+R WN MIR T+ G ALL Y
Sbjct: 76 GIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFY 135
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ G PDK+TFP+VIKAC ++ G+ VH GF D+FV S+L+ Y +
Sbjct: 136 FKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSEN 195
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + R +FD+M + V W M++G +GD D A
Sbjct: 196 GCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNA 232
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I++ G + ++D+ + G+ D A F I WN MI + + +G +
Sbjct: 376 HILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEE 435
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G + D + + AC A+ GKE+H ++ F D+F +S L+D
Sbjct: 436 AIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALID 495
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y KCG++D ++FD M ++ VSW ++I+ G L
Sbjct: 496 MYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRL 534
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F Q + MI ++G + AL ++ ++ R + T V+ AC A
Sbjct: 307 IFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAA 366
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ GKE+HG +K G +V S +MD+Y KCG +D + F + + V W +MI+
Sbjct: 367 LTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITS 426
Query: 155 LAASGDLDAA 164
+ +G + A
Sbjct: 427 CSQNGKPEEA 436
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +D L+D+ S G D A VF + + +WN +I A G +
Sbjct: 478 MMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDS 537
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M+ +G +PD TF +I AC + +++G + + G M + ++D
Sbjct: 538 LNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVD 597
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L+ + G ++ M + M W T++ G+++ A
Sbjct: 598 LFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELA 640
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G +D ++ L+ G A VF + V TWN+MI A G S +
Sbjct: 136 EVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEK 195
Query: 63 AL-LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A LL + + RPD+ T ++ AC +E+GK +H + + G ++ V + ++
Sbjct: 196 AFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAIL 255
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y KC D++ +++F+++R + V+SWT+M+SGLA SG A
Sbjct: 256 DMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEA 298
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++R L ++ L KL+ S G ++A +F+Q++ P F N MIR +
Sbjct: 34 LLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPY 93
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A+ LY M+ G D +T+PFV+ AC A++ G+ H +K GF D+FV + L+
Sbjct: 94 EAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALI 153
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y CG +FD+ VR VV+W MI+ G
Sbjct: 154 QFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKG 191
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 82/152 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL + + +LD+ + A VF++IR V +W M+ L G +AL L+
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALF 302
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M N D+ T V+ AC + A+++GK +H L K + D+ +++ L+D+Y KC
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D ++F +MRVR+V +W +I GLA G
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALIGGLAMHG 394
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++ ++ D +L L+D+ + G D AL VF ++R +VFTWN +I L + G A
Sbjct: 340 IDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDA 399
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L++ M + PD TF ++ AC + +++G + + K M ++D
Sbjct: 400 ISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVD 459
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
L + VD + M +++ V W T++ + G D A
Sbjct: 460 LLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 502
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL + + +LD+ + G A L+F + +WN +I A + + L
Sbjct: 399 VKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETL 458
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ + PD +TF V+KAC A+ G EVHG +K+G D FV S ++D+Y
Sbjct: 459 ALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMY 518
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG + K+ +++ R+ VSW ++ISG ++
Sbjct: 519 CKCGMLVEAEKIHERLEERTTVSWNSIISGFSSE 552
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G+ D + ++D+ G A + ++ +WN +I + +
Sbjct: 498 RVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGEN 557
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M+ G PD FT+ V+ C +E GK++HG +K D+++ ST++D
Sbjct: 558 ALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVD 617
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG++ R MF+K R V+W+ MI A G
Sbjct: 618 MYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHG 654
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G +D + L+D+ S K DHA +F ++ + W+ +I + + L
Sbjct: 197 IQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGL 256
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY +M+ G + TF ++C A E G ++H A+K F D V + +D+Y
Sbjct: 257 KLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMY 316
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
KC + RK+F+ + S +I G A
Sbjct: 317 AKCDRMVDARKVFNTFPNPTRQSHNALIVGYA 348
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 73 NGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
N P K TF + + C AI GK+ H GF +FV + L+ Y KC +++
Sbjct: 31 NQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLN 90
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FDKM R V+SW TMI G A G+++ A
Sbjct: 91 YAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFA 123
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A +F + V +WN M+ +G +++ ++ M + D TF V+
Sbjct: 118 GNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVL 177
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC G +VH LA++ GF D+ + L+D+Y C +D +F +M R+ V
Sbjct: 178 KACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSV 237
Query: 147 SWTTMISG 154
W+ +I+G
Sbjct: 238 CWSAVIAG 245
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 12 DQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
D ++ LD+ Y K D A VF+ P + N +I L+AL ++
Sbjct: 305 DNIVGTATLDM---YAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFR 361
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+ + D+ + + AC A +G ++HGLAVK G ++ V +T++D+Y KCG
Sbjct: 362 SLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCG 421
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISG 154
+ +FD M ++ VSW +I+
Sbjct: 422 ALMEACLIFDDMEIKDAVSWNAIIAA 447
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ L +D + ++D+ S G + ++F + TW+ MI A G
Sbjct: 599 QILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGED 658
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M +P+ F V++AC ++KG + G M S ++
Sbjct: 659 AIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMV 718
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
DL + G V+ ++ + M + V W T++ G+++ A
Sbjct: 719 DLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVA 762
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ + G + A VF +I +V +W M+ +G + LLL+N M
Sbjct: 166 DGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMR 225
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+ P ++T VI AC A + + +G+ +HG +K G + F+ + L+D+Y+KCG+++
Sbjct: 226 QDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELE 285
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGD-LDA 163
+ +FD++ +V WTTMI G +G+ LDA
Sbjct: 286 DAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDA 318
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL ++V L+D+ + A +F I V WN M+ + AL
Sbjct: 361 VKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDAL 420
Query: 65 LLYNLMICNGFRPDKFTFPFVIKA--CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L+ M G PD + + A C+ L I GK HG AVK F +++V + L++
Sbjct: 421 MLFKQMSLKGPSPDAISVVHALSASVCLGDLLI--GKSFHGYAVKHAFLSNIYVSTALLN 478
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
LY KCGD+ R++FD+M R+ V+W MI G GD
Sbjct: 479 LYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGD 516
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ GL ++ + LLD+ G+ + A VF ++ + W MI T +G+ L
Sbjct: 258 SVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLD 317
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ P+ T V+ A + G+ +HG+AVK G V + L+D
Sbjct: 318 ALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVD 377
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+Y KC V ++F + + VV+W +M+SG A +
Sbjct: 378 MYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAEN 413
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 8/147 (5%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KLL + G A +VF P +++ +M+ L +A+ L+ M RP
Sbjct: 69 KLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDM--RRRRP 126
Query: 78 -----DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
D F +KACI S G +H AVK G + D FV ++L+D+Y K GD++
Sbjct: 127 CPEAQDDFVLSLALKACIRSADYGYGTRLHCDAVKVGGA-DGFVMNSLVDMYAKAGDLEC 185
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
RK+F+++ R+VVSWT+M+SG +G
Sbjct: 186 ARKVFERIPGRNVVSWTSMLSGCVQNG 212
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + G + +L +L+D+ +G+ D+A+ +F I +V WN +I L + Q
Sbjct: 35 RIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQ 94
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L++LMI PD+ TF V++AC A + +++H + GF V + L+
Sbjct: 95 VLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLI 154
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DLY K G VD + +F+++ ++ VSW MISGL+ +G D A
Sbjct: 155 DLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEA 197
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 86/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KII +G + L+ L+DL S G D A LVF ++ +W MI L+ +G +
Sbjct: 137 KIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDE 196
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+LL+ M + P + F V+ AC + G+++HG VK G S + FV + L+
Sbjct: 197 AILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVT 256
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY + G++ ++F KM R +S+ ++ISGLA G D A
Sbjct: 257 LYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 87/151 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G+S+D ++ LLDL + A F +V WN+M+ A G+ ++
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M G P+++T+P +++ C + A++ G+++H +K+GF +++V S L+D+
Sbjct: 400 YWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDM 459
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G++D R + ++R VVSWT MI+G
Sbjct: 460 YAKHGELDTARGILQRLREEDVVSWTAMIAG 490
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G + + L+D+ + +G+ D A + ++R V +W MI T +
Sbjct: 440 QVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAE 499
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ M G R D F I AC A+ +G+++H + +G+S D+ + + L+
Sbjct: 500 ALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVS 559
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY +CG F+K+ + +SW +ISG A SG + A
Sbjct: 560 LYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEA 601
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S D + L+ L + G+ A L F +I +WN +I G +AL ++
Sbjct: 546 GYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVF 605
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ M G + FTF + A + I++GK++H + +K G+ + + L+ LY KC
Sbjct: 606 SQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKC 665
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G ++ ++ F +M ++VVSW MI+G + G
Sbjct: 666 GSIEDAKREFFEMPEKNVVSWNAMITGYSQHG 697
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+++GLS++ + L+ L S +G A +FS++ ++N +I L G S +A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + +PD T ++ AC + A KGK++H +K G S D+ ++ +L+DL
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KC D++ + F +VV W M+ G+L +
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G R + T+ ++ + C S ++ K++H K+GF + + S L+D+YL G+VD
Sbjct: 5 GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64
Query: 134 RKMFDKMRVRSVVSWTTMISGLAA 157
K+FD + +V W +ISGL A
Sbjct: 65 IKLFDDIPSSNVSFWNKVISGLLA 88
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R D +L ++D+ + G + A +F ++ +V +W+ MI A G +A
Sbjct: 157 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 216
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ +M+ +G PDK T ++ AC ++ G+ +H + K G D FV + L+D+
Sbjct: 217 LDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 276
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC +++ R +FDKM R +V+WT MI G A G+ + +
Sbjct: 277 YGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANES 317
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 60/102 (58%)
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G + + +I G RPD +T PFVI+AC ++ G+ +H + K G D FV
Sbjct: 9 GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 68
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ L+D+Y+KC +++ R +FDKM+ R +V+WT MI G A G
Sbjct: 69 AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECG 110
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ ++GL D + L+D+ + + A +F +++ + TW +MI G + ++
Sbjct: 56 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 115
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L+ M G PDK V+ AC A+ K + + + F D+ + + ++D+
Sbjct: 116 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 175
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V+ R++FD+M ++V+SW+ MI+ G
Sbjct: 176 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 211
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ ++GL D + L+D+ + + A +F ++ + TW +MI G++ ++
Sbjct: 258 VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANES 317
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+L++ M G PDK V+ AC A+ K + + + F D+ + + ++D+
Sbjct: 318 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDM 377
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ KCG V+ R++FD+M ++V+SW+ MI+ G
Sbjct: 378 HAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 413
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I R D +L ++D+ + G + A +F ++ +V +W+ MI A G +A
Sbjct: 359 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 418
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMD 122
L L+ +M+ +G P+K T ++ AC + +E+G L + R D+ + ++D
Sbjct: 419 LDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVD 478
Query: 123 LYLKCGDVDGGRKMFDKMRVRS 144
L + G +D K+ + M V
Sbjct: 479 LLGRAGRLDEALKLIESMTVEK 500
>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19191, mitochondrial; Flags: Precursor
gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V WNL IR +++LLL+ M GF P+ FTFPFV KAC + + VH
Sbjct: 17 VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 76
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
+K+ F D+FV + +D+++KC VD K+F++M R +W M+SG SG D
Sbjct: 77 HLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDK 136
Query: 164 A 164
A
Sbjct: 137 A 137
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Query: 24 SFYGKT---DHALLVFSQIRCPH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
S YGK D A LVF I V +WN M +A ++ G + A LY LM+ F+PD
Sbjct: 196 STYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 255
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + +C + +G+ +H A+ G +D+ +T + +Y K D R +FD
Sbjct: 256 LSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD 315
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R+ VSWT MISG A GD+D A
Sbjct: 316 IMTSRTCVSWTVMISGYAEKGDMDEA 341
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I G D + + + S T A L+F + +W +MI G +AL
Sbjct: 283 IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 342
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDL 123
L++ MI +G +PD T +I C ++E GK + A G RD + + + L+D+
Sbjct: 343 ALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDM 402
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R +FD ++VV+WTTMI+G A +G
Sbjct: 403 YSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNG 438
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A VF ++ TWN M+ G + +A L+ M N PD T +I++
Sbjct: 104 DYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSA 163
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RSVVS 147
+++ + +H + ++ G + V +T + Y KCGD+D + +F+ + R+VVS
Sbjct: 164 SFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVS 223
Query: 148 WTTMISGLAASGD 160
W +M + G+
Sbjct: 224 WNSMFKAYSVFGE 236
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 7 YGLSNDQLLV-RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
YG D +++ L+D+ S G A +F V TW MI ++G L+AL
Sbjct: 386 YGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALK 445
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLY 124
L++ MI ++P+ TF V++AC S ++EKG E H + S + S ++DL
Sbjct: 446 LFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLL 505
Query: 125 LKCGDVDGGRKMFDKMRVR 143
+ G ++ ++ M +
Sbjct: 506 GRKGKLEEALELIRNMSAK 524
>gi|302790315|ref|XP_002976925.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
gi|300155403|gb|EFJ22035.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
Length = 395
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI++ G ++ ++ ++ S + + A VF ++R P VF +N+M+ A DG +
Sbjct: 102 KIVQGGAESNPMVATTIIHRYSKFSSSGKARQVFDKVRDPDVFVYNVMVAAYAKDGLYEE 161
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST-LM 121
+L L+ M G PDK TF ++ +C A++ G+ VH + + G M ST L+
Sbjct: 162 SLGLFQRMQMEGITPDKITFLAMLDSCQDERALKTGQLVHRMIEETGLGSAMIDISTGLI 221
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+Y KCGD++ + +F+ M RSV++W+++I+ A
Sbjct: 222 SMYSKCGDLEAAKAIFEAMEERSVITWSSIIAAYA 256
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I + L D L + ++ + G A ++ P V W I T G + +
Sbjct: 4 KAIHHRLELDAFLGKNIVKMYLKCGSVMDASKALQEMVEPDVTLWTETIAEHTKRGMAKE 63
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL ++ M NG P+K TF + +C +E +++H V+ G + V +T++
Sbjct: 64 ALRIFQTMQLNGVAPNKITFLTALNSCS---RLEDLRDIHDKIVQGGAESNPMVATTIIH 120
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K R++FDK+R V + M++ A G
Sbjct: 121 RYSKFSSSGKARQVFDKVRDPDVFVYNVMVAAYAKDG 157
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+ + S G + A +F + V TW+ +I A QAL L+ M GF P
Sbjct: 220 LISMYSKCGDLEAAKAIFEAMEERSVITWSSIIAAYAHHNRVSQALELFEEMQQAGFAPS 279
Query: 79 KFTFPFVIKAC 89
TF V+ AC
Sbjct: 280 PVTFLSVLSAC 290
>gi|297834252|ref|XP_002885008.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
gi|297330848|gb|EFH61267.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD----HALLVFSQIRCPHVFTWNLMIRALTIDG 58
KI L ND ++ +L+ + S D LL+ S P TWN++ R +
Sbjct: 29 KIHVSSLQNDSFIIIELVRVSSLSLVKDLTFARTLLLHSSDSTPS--TWNMLNRGYSSSD 86
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+ ++++ Y+ M G P+K TFPF++KAC + L + G+++ +K GF D++V +
Sbjct: 87 TPVESIWFYSEMERRGINPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDSDVYVGN 146
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
L+ LY C RKMFD+M R+ VSW ++++ L +G +
Sbjct: 147 NLIHLYGSCKKTYDARKMFDEMTDRNFVSWNSIMTALVENGKFN 190
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 79/162 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++++G +D + L+ L KT A +F ++ + +WN ++ AL +G
Sbjct: 132 EVLKHGFDSDVYVGNNLIHLYGSCKKTYDARKMFDEMTDRNFVSWNSIMTALVENGKFNL 191
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +I F PD+ T ++ AC +L++ K V + + + L+D
Sbjct: 192 VFECFCEIIGRRFCPDETTMVVLLSACCGNLSLGKFHSQSRRVVVRELELNCRLGTALVD 251
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G ++ R +F++M ++V +W MI GLA G ++ A
Sbjct: 252 MYAKSGGLEYARLVFERMVDKNVWTWNAMIVGLAQYGFVEEA 293
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRP 77
L+D+ + G ++A LVF ++ +V+TWN MI L G +AL L+ +M + RP
Sbjct: 249 LVDMYAKSGGLEYARLVFERMVDKNVWTWNAMIVGLAQYGFVEEALQLFAKMMKESTVRP 308
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
TF V+ AC + ++ G + KA + M + M
Sbjct: 309 KYVTFLGVLCACSHTALVDDGYKYFHEMEKAHKIKPMIIHYRAM 352
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 5/167 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ G S ++ LL L +G A VF I P WN +I+ T +S +
Sbjct: 49 QIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKK 108
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
++ L+ M G + FT+ F++ AC+ S +G+++HG + G+ +++V++ L++
Sbjct: 109 SIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLIN 168
Query: 123 LYLKCG-----DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY G D+ R +FD+M +VV W ++++G GD D A
Sbjct: 169 LYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGA 215
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D A VF ++ +V TW +M+ +G AL L++ M G D+ +
Sbjct: 210 GDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAAL 269
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFV----QSTLMDLYLKCGDVDGGRKMFDKMRV 142
AC + GK +HG + SR + V + L+ +Y CG +D K+F+++
Sbjct: 270 SACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQ 329
Query: 143 RSVVSWTTMISGLAASG 159
R+ VSW+++I+G A G
Sbjct: 330 RNTVSWSSIITGFAKQG 346
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+ + + G D A VF +I + +W+ +I G ++A+ ++ LM+C+G
Sbjct: 303 LNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSG 362
Query: 75 ---FRPDKFTFPFVIKACIASLAIEKG 98
RPD+ TF + AC + I G
Sbjct: 363 QNEVRPDEITFIGALTACSHAGLISDG 389
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+F F V+K+C++ + K +H V +GFS+ ++ + L+ LY+ G + +K+F
Sbjct: 27 QQFIFS-VLKSCVSFRNLAK---IHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVF 82
Query: 138 DKMRVRSVVSWTTMISGLAAS 158
+ + S W +I G S
Sbjct: 83 EDITAPSTTVWNQIIKGHTRS 103
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LL 66
GLS + L L ++ + + A VF ++ WN ++ +G + A+ ++
Sbjct: 255 GLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMV 314
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ +G RPD T V+ AC + A+ +EVH AV+ GF + V + ++D+Y K
Sbjct: 315 VRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCK 374
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
CG VD RK+FD M+ R+ VSW MI G A +GD A
Sbjct: 375 CGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEA 412
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL ++ ++ L+ + +TD A VF ++ +WN MI T +GSS A
Sbjct: 454 LVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDA 513
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M +PD FT +I A + + +HG +++ +D++V + L+D+
Sbjct: 514 VRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDM 573
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V R +F+ R R V++W MI G + G
Sbjct: 574 YAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHG 609
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G + +LD+ G D A VF ++ + +WN MI+ +G + +AL
Sbjct: 354 VRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEAL 413
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ G + + AC +++G+ VH L V+ G ++ V + L+ +Y
Sbjct: 414 ALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMY 473
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC D ++FD++ ++ VSW MI G +G + A
Sbjct: 474 CKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDA 513
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR L D ++ L+D+ + G+ A +F+ R HV TWN MI GS A+
Sbjct: 556 IRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAV 615
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDL 123
L+ M +G P++ TF V+ AC + +++G+E + G M T++DL
Sbjct: 616 ELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDL 675
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS 147
+ G + KM + +S
Sbjct: 676 LGRAGKLHEAWSFIQKMPMEPGIS 699
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
+G P TF ++K C A + G+ VH G S + + L ++Y KC
Sbjct: 219 SGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD 278
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R++FD+M R V+W +++G A +G +AA
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAA 310
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
C F+ ++ + FS F WN +I++ + QALLL+ LM+ NG DKF+
Sbjct: 61 CVFH---EYHVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSL 117
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+KAC ++ G ++HG K G D+F+Q+ L+ LYLKCG + R+MFD+M
Sbjct: 118 SLVLKACSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQ 177
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
R VS+ +MI+G G +++A
Sbjct: 178 RDSVSYNSMINGYVKCGLIESA 199
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G A +F Q+ V +N M+ + ++AL ++N M PD+ T +
Sbjct: 290 GFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVII 349
Query: 86 IKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+ A IA L + K ++H V+ F + L+D+Y KCG + +F+ + +S
Sbjct: 350 LSA-IAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKS 408
Query: 145 VVSWTTMISGLAASGDLDAA 164
+ W MI GLA G ++A
Sbjct: 409 IDHWNAMIGGLAVHGLGESA 428
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 2/148 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G HA+LVF I + WN MI L + G A + + PD
Sbjct: 384 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPD 443
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLA-VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
TF V+ AC S +++G L K + ++D+ + G ++ + +
Sbjct: 444 DITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 503
Query: 138 DKMRVR-SVVSWTTMISGLAASGDLDAA 164
++M + + V W T ++ + + +
Sbjct: 504 EEMPIEPNDVIWRTFLTACSHHKEFETG 531
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 43 HVFTWNLMIR--ALTIDGSSLQALLLYNLMICNGFRPDK--FTFPFVIKACIASLAIEKG 98
++ +WN MI A T +G ++ + L + P+K ++ +I + IE
Sbjct: 212 NLISWNSMISGYAQTSEGVNIASKLFAEM-------PEKDLISWNSMIDGYVKHGRIEDA 264
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K + + + RD+ +T++D Y K G V + +FD+M +R VV++ +M++G
Sbjct: 265 KGLFDVMPR----RDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAG 316
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+ ++++D Y+K G ++ + +FD M R VV+ TMI G A G + A
Sbjct: 242 EKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQA 295
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I + G + +L +L+D+ +G+ D+A+ +F I +V WN +I L + Q
Sbjct: 35 RIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQ 94
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L L++LMI PD+ TF V++AC A + +++H + GF V + L+
Sbjct: 95 VLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLI 154
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DLY K G VD + +F+++ ++ VSW MISGL+ +G D A
Sbjct: 155 DLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEA 197
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 86/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KII +G + L+ L+DL S G D A LVF ++ +W MI L+ +G +
Sbjct: 137 KIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDE 196
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+LL+ M + P + F V+ AC + G+++HG VK G S + FV + L+
Sbjct: 197 AILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVT 256
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY + G++ ++F KM R +S+ ++ISGLA G D A
Sbjct: 257 LYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 87/151 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G+S+D ++ LLDL + A F +V WN+M+ A G+ ++
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M G P+++T+P +++ C + A++ G+++H +K+GF +++V S L+D+
Sbjct: 400 YWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDM 459
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y K G++D R + ++R VVSWT MI+G
Sbjct: 460 YAKHGELDTARGILQRLREEDVVSWTAMIAG 490
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+++GLS++ + L+ L S +G A +FS++ ++N +I L G S +A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + +PD T ++ AC + A KGK++H +K G S D+ ++ +L+DL
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+KC D++ + F +VV W M+ G+L +
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ G + + L+D+ + +G+ D A + ++R V +W MI T +
Sbjct: 440 QVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAE 499
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV-----Q 117
AL L+ M G R D F I AC A+ +G+++H + +G+S D+ +
Sbjct: 500 ALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALAS 559
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ L+ LY KCG ++ ++ F +M ++VVSW MI+G + G
Sbjct: 560 NVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHG 601
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G R + T+ ++ + C S ++ K++H K+GF + + S L+D+YL G+VD
Sbjct: 5 GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64
Query: 134 RKMFDKMRVRSVVSWTTMISGLAA 157
K+FD + +V W +ISGL A
Sbjct: 65 IKLFDDIPSSNVSFWNKVISGLLA 88
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I +++ + ++ KLL L S +G TD+A VF +I P+ + W +I + +A
Sbjct: 26 LIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEA 85
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M FT V+KA + G+ V+G +K GF+ D+ VQ++++DL
Sbjct: 86 FSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDL 145
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++C VD R+ FD+M + +VSW MISG + +D A
Sbjct: 146 FMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIA 186
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G T+ A +F Q+ ++ TW+ MI +G L+AL L+ +PD+ +I
Sbjct: 305 GDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGII 364
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC I+ + + V D+ V ++L+D+Y KCG ++ +MF+ + ++
Sbjct: 365 SACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLL 424
Query: 147 SWTTMISGLAASG 159
++TMI+ LA G
Sbjct: 425 CYSTMIAALANHG 437
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A ++F + + +WN+M+ G + A +++ M + D ++ +I
Sbjct: 212 GDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIH----DTGSWNIMI 267
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+ +E K+ ++++ ++D Y+K GD +G R +FD+M ++++V
Sbjct: 268 SGFCKAGELESAKDFFDRMP----NKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLV 323
Query: 147 SWTTMISGLAASG 159
+W+TMI G A +G
Sbjct: 324 TWSTMIGGYARNG 336
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++YG + D ++ +LDL K D A F ++ + +WN+MI + A
Sbjct: 127 VLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIA 186
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC---IASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++ M P++ + C A E + VK D+ + +
Sbjct: 187 RKFFDRM------PERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVK-----DLASWNVM 235
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y+ GD R +F KM + SW MISG +G+L++A
Sbjct: 236 VSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESA 279
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L +D + L+D+ + G + AL +F + ++ MI AL G A+ L++
Sbjct: 388 LLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFD 447
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
M +PD TF V+ AC +++G++
Sbjct: 448 KMQRANIKPDSVTFLGVLTACNHGGLVDEGRK 479
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 99 KEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
K +H L +++ + FV + L+ LY + G D K+FD++ + WT++I G
Sbjct: 19 KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVE 78
Query: 158 SGDLDAA 164
+ D A
Sbjct: 79 NRQYDEA 85
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL-MICNGFR 76
KL++L + G A F I+ V+ WNLMI G+S + + ++L M+ +G
Sbjct: 91 KLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLT 150
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD TFP V+KAC + G ++H LA+K GF D++V ++L+ LY + V R +
Sbjct: 151 PDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 207
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FD+M VR + SW MISG SG+ A
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEA 235
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+++G D + L+ L S Y +A ++F ++ + +WN MI G++ +AL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236
Query: 65 LLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L NG R D T ++ AC + +G +H ++K G ++FV + L+DL
Sbjct: 237 TL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
Y + G + +K+FD+M VR ++SW ++I
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSII 320
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++GL ++ + KL+DL + +G+ VF ++ + +WN +I+A ++ L+A+
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
L+ M + +PD T + + ++ L I + V G ++ G F D+ + + ++
Sbjct: 334 SLFQEMRLSRIQPDCLTL-ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G VD R +F+ + V+SW T+ISG A +G
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNG 429
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G D A VF+ + V +WN +I +G + +A+ +YN+M G ++ T+ V
Sbjct: 398 GLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSV 457
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + A+ +G ++HG +K G D+FV ++L D+Y KCG ++ +F ++ +
Sbjct: 458 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNS 517
Query: 146 VSWTTMIS--GLAASGD 160
V W T+I+ G G+
Sbjct: 518 VPWNTLIACHGFHGHGE 534
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ GL D +V L D+ G+ + AL +F QI + WN +I G +
Sbjct: 476 RLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEK 535
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
A++L+ M+ G +PD TF ++ AC S +++G+ + G + + ++
Sbjct: 536 AVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMV 595
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
D+Y + G ++ K M ++ S W ++S G++D
Sbjct: 596 DMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVD 637
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ K +H V + +++ + + L++LY G+V R FD ++ R V +W MISG
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 155 LAASGD 160
+G+
Sbjct: 127 YGRAGN 132
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN M+ T + L L+ LM G R D FT V K C AI +GK+VH A+
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+G+ D++V S ++D+Y+KCGD+ + FD + V V+WTTMISG +G+ + A
Sbjct: 545 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G D + +LD+ G A F I P W MI +G +A
Sbjct: 544 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAF 603
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+++ M G PD+FT + KA A+E+G+++H A+K + D FV ++L+D+Y
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG +D +F ++ + ++ +W M+ GLA G+
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 699
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL- 61
+I+ + + ++ L+ L+ + S G +A VF ++ + +WN ++ A +
Sbjct: 64 RILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVV 123
Query: 62 ----QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
QA LL+ ++ + + T ++K C+ S + + HG A K G D FV
Sbjct: 124 ENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVA 183
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++YLK G V G+ +F++M R VV W M+ G
Sbjct: 184 GALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ +ND + L+D+ + G D A +F +I ++ WN M+ L G + L
Sbjct: 645 LKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETL 704
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G +PDK TF V+ AC S L E K + + G ++ S L D
Sbjct: 705 QLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADA 764
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G V + + M + + S + T+++ GD +
Sbjct: 765 LGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTE 804
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF + + +WN +I + +G ++A+ L+ ++ G +PD++T V+KA +
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428
Query: 92 -SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ K+VH A+K D FV + L+D Y + + +F++ +V+W
Sbjct: 429 LPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNA 487
Query: 151 MISGLAASGD 160
M++G S D
Sbjct: 488 MMAGYTQSHD 497
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ + D+ TF ++ + ++ G++VH +A+K G + V ++L+++Y K
Sbjct: 306 MVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK 365
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FD M R ++SW ++I+G+A +G
Sbjct: 366 FGFARTVFDNMSERDLISWNSVIAGIAQNG 395
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++ I S + GK H + + + F+ + L+ +Y KCG + R++FDKM R +
Sbjct: 46 LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105
Query: 146 VSWTTMISGLAASGD 160
VSW ++++ A S +
Sbjct: 106 VSWNSILAAYAQSSE 120
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL D+ + L+++ +GK ++F ++ V WNLM++A G +A+
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232
Query: 66 LYNLMICNGFRPDKFTF 82
L + +G P++ T
Sbjct: 233 LSSAFHSSGLNPNEITL 249
>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Glycine max]
Length = 678
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L+ ++ + S G+ + A L+F+ + + +WN ++ LT + +AL +++ M
Sbjct: 366 DTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMN 425
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+ D+F+F VI AC ++E G++V G A+ G D + ++L+D Y KCG V+
Sbjct: 426 KLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVE 485
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
GRK+FD M VSW TM+ G A +G
Sbjct: 486 IGRKVFDGMVKTDEVSWNTMLMGYATNG 513
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ + D+ + L+ + G+ A VF P WN +I +G ++
Sbjct: 225 RIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVE 284
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L++ M+ NG + D ++ A L +E K++H A KAG + D+ V S+L+D
Sbjct: 285 AVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLD 344
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC K+F +++ + TMI+ + G ++ A
Sbjct: 345 AYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDA 386
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 24 SFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY---NLMICNGFRP 77
S + K+ H L +F+ + + WN +I + + G +AL L+ NL
Sbjct: 106 SAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYR 165
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHG--LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
D F + AC SLA+ GK+VH G D + S+L++LY KCGD+D +
Sbjct: 166 DAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAAR 225
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +R S + +ISG A +G + A
Sbjct: 226 IVSFVRDVDEFSLSALISGYANAGRMREA 254
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K I GL +DQ++ L+D G + VF + +WN M+ +G ++
Sbjct: 458 KAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIE 517
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
AL L+ M G P TF V+ AC S +E+G+ + H + + + S ++
Sbjct: 518 ALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMV 577
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGD 160
DL+ + G + + ++M ++ + W +++ G A G+
Sbjct: 578 DLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHGN 617
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 95 IEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+ +G+++H +K G + + V + L+ LY +C ++ +FD+M + SW T++
Sbjct: 16 LREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQ 75
Query: 154 GLAASGDLDAA 164
SG +A
Sbjct: 76 AHLNSGHTHSA 86
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+YG +D L +L++ G+ + A +F + V +WN ++ G+ +
Sbjct: 172 VIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREV 231
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L M +G PD+ TF ++ A + GK VHG ++AG +D ++++L+ +
Sbjct: 232 LQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGM 291
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
YLKCG+V+ ++F+ M + V+SWT MISGL + D A
Sbjct: 292 YLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMA 332
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + Y K H + VF ++ + +WN ++ +G +ALLL+N M RPD
Sbjct: 389 LVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPD 448
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T +++AC + A+ +GK +H K+ + + + L+D+Y KCGD+ +K FD
Sbjct: 449 SITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFD 508
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
+M + +VSW+++I+G + G + A
Sbjct: 509 RMPQQDLVSWSSIIAGYGSHGKGETA 534
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P ++N +I L+ G+ LL Y+ M+ PD TFP ++KAC + G
Sbjct: 11 PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSF 70
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
H + G+S D ++ ++L++ Y K G RK+FD M R+VV WTTMI +G+
Sbjct: 71 HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130
Query: 162 DAA 164
D A
Sbjct: 131 DVA 133
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q++I G S+D + L++ S +G A VF + +V W MI T G
Sbjct: 72 QRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A +YN+M G +P T ++ + + ++ +H ++ GF D+ + ++++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSML 188
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
++Y KCG V+ + +F+ M R V+SW +++SG A G++
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNI 228
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL D + L+ + G + A +F + V +W MI L + + A
Sbjct: 273 ILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMA 332
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M+ + P T V+ AC + G VHG ++ D+ Q++L+ +
Sbjct: 333 VTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTM 392
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
Y KCG ++ +FD+M R +VSW ++SG A +G L
Sbjct: 393 YAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHL 430
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ G + + ++L C S G D+A LVF Q++ P++F+WN +IR + +
Sbjct: 47 LIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQI 106
Query: 63 ALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL L+ ++++ + P + T+P + KA G ++HG +K G D F+++T++
Sbjct: 107 ALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTIL 166
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y G + R++F++ VVSW +MI GLA G++D +
Sbjct: 167 YMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDES 209
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D + +F ++ + +WN MI +G +AL L+ M +P +FT ++
Sbjct: 204 GEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLL 263
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A A+ +G +H K + V + ++D+Y KCG + ++F+K+ RS+
Sbjct: 264 NASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLS 323
Query: 147 SWTTMISGLAASG 159
SW +MI GLA +G
Sbjct: 324 SWNSMIFGLAVNG 336
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I + L + ++V ++D+ G +AL VF +I C + +WN MI L ++G
Sbjct: 280 EYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEK 339
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--ST 119
+A+L++ ++ + +PD +F V+ AC +++G E +K + + ++ +
Sbjct: 340 EAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFS-RMKNTYRIEPSIKHYNL 398
Query: 120 LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
++D+ + G ++ + M + + + W ++S G+ + A
Sbjct: 399 MVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMA 444
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 82/157 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + +L KLL + G A +F Q+R WN MIR T+ G ALL Y
Sbjct: 76 GIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFY 135
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ G PDK+TFP+VIKAC ++ G+ VH GF D+FV S+L+ Y +
Sbjct: 136 FKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSEN 195
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G + R +FD+M + V W M++G +GD D A
Sbjct: 196 GCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNA 232
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ GL D + LL + + G A +F + + TWN MI +G +A
Sbjct: 274 VVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEA 333
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ MI +PD TF + + +GKE+H ++ G S D+F++S L+D+
Sbjct: 334 SCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDI 393
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC DV+ RK+FD+ +V T MISG +G
Sbjct: 394 YFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNG 429
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
I++ G + ++D+ + G+ D A F I WN MI + + +G +
Sbjct: 475 HILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEE 534
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G + D + + AC A+ GKE+H ++ F D+F +S L+D
Sbjct: 535 AIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALID 594
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+Y KCG++D ++FD M ++ VSW ++I+ G L
Sbjct: 595 MYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRL 633
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KI G D + L+ S G A +F ++ WN+M+ +G
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A ++ M P+ TF V+ C + + I G ++HGL V +G D V +TL+
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLA 291
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG + R++FD M +V+W MISG +G +D A
Sbjct: 292 MYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEA 333
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G+S D L L+D+ + A +F Q + MI ++G + A
Sbjct: 375 IIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNA 434
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ ++ R + T V+ AC A+ GKE+HG +K G +V S +MD+
Sbjct: 435 LEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDM 494
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG +D + F + + V W +MI+ + +G + A
Sbjct: 495 YAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEA 535
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R +D L+D+ S G D A VF + + +WN +I A G +
Sbjct: 577 MMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDS 636
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M+ +G +PD TF +I AC + +++G + + G M + ++D
Sbjct: 637 LNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVD 696
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L+ + G ++ M + M W T++ G+++ A
Sbjct: 697 LFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELA 739
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-PDKFTFPFVIKAC 89
+A VF+ R V TWN M+RA +AL Y M+ PD+FTFP ++K C
Sbjct: 30 YAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
L + GK +HG VK D+++++TL+++Y CGD+ R +F++M R+ V WT
Sbjct: 90 ALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149
Query: 150 TMISG 154
+MISG
Sbjct: 150 SMISG 154
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC-NGFRP 77
L+++ + G A VF ++ V+ W+ +I + S +AL L+ + + RP
Sbjct: 221 LVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRP 280
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++ T VI AC +E G+ VH + + + ++L+D++ KCGD+D +++F
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIF 340
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D M + ++SW +M++G A G
Sbjct: 341 DSMSYKDLISWNSMVNGFALHG 362
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++Y L +D + LL++ + G A +F ++ + W MI + +
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALLLY M +GF PD+ T ++ AC + G ++H + + S L++
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y KCGD+ R++FDK+ + V +W+ +I G
Sbjct: 224 MYAKCGDLKTARQVFDKLSDKDVYAWSALIFG 255
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ S G D A +F + + +WN M+ + G +AL + LM
Sbjct: 319 LNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTD 378
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEV 101
+PD+ TF V+ AC + +++GK++
Sbjct: 379 LQPDEITFIGVLTACSHAGLVQEGKKL 405
>gi|302824285|ref|XP_002993787.1| hypothetical protein SELMODRAFT_137607 [Selaginella moellendorffii]
gi|300138383|gb|EFJ05153.1| hypothetical protein SELMODRAFT_137607 [Selaginella moellendorffii]
Length = 357
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 36/198 (18%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTID----- 57
++ G D ++ LL++ G D AL +FS +R ++ TWN M+ AL +
Sbjct: 32 RVCESGHLGDVIVATALLNMYGKLGCPDRALEIFSAMRQRNMITWNAMVAALAHNERFEQ 91
Query: 58 --------------------------GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
G S QAL L+ M +G PD +F ++ AC +
Sbjct: 92 AFGIFERCSPKDVVLWNAMITAYAQAGHSKQALELFQGMQTDGVSPDSVSFLTILNACCS 151
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-----VV 146
+ +G+E+H +K+G + D+F+ + L++ Y K G VD R +FD+M+ RS V
Sbjct: 152 PEFLSRGREIHARMIKSGLTEDVFLGTALVNFYGKAGSVDDSRAVFDRMKQRSLSRDDVS 211
Query: 147 SWTTMISGLAASGDLDAA 164
SW T+++ LA G D A
Sbjct: 212 SWNTLVTVLARHGRGDEA 229
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PHVFTWNLMIRALTID 57
++I+ GL+ D L L++ G D + VF +++ V +WN ++ L
Sbjct: 164 RMIKSGLTEDVFLGTALVNFYGKAGSVDDSRAVFDRMKQRSLSRDDVSSWNTLVTVLARH 223
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV---KAGFSRDM 114
G +AL + M G RP+ TF V+ C S + +G + V + +
Sbjct: 224 GRGDEALSHFYRMQSEGARPNSSTFLSVLSGCSHSGLLWEGIQCFSSMVWDHRVEICEEH 283
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGD 160
F ++DL + G + + KM + S V W +++ GD
Sbjct: 284 F--GCVIDLLGRAGRLGEADEFIAKMPLDSNSVVWMSLLGASKIQGD 328
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD G + VF I + W+ M+ L S +A+ ++ ++ G +P+
Sbjct: 445 LLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPN 504
Query: 79 KFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++TF VI AC +S A +E GK++H AVK+G S + V S L+ +Y K G+++ K+F
Sbjct: 505 EYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVF 564
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R +VSW +MI+G GD A
Sbjct: 565 TRQEERDIVSWNSMITGYGQHGDAKKA 591
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 82/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++ L L + L S + +A +F + + +N ++ + + +AL
Sbjct: 30 IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + +G D T +K C G++VH ++K+GF D+ V ++L+D+Y
Sbjct: 90 HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY 149
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+K D + GR +FD+M +++VVSWT+++SG A +G
Sbjct: 150 MKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNG 184
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ +V +W ++ +G + + + L N M G P+ FTF V+ A
Sbjct: 161 IFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESI 220
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
IE G +VH + VK GF FV + L+ +YLK V +FD M VR V+W MI G
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGG 280
Query: 155 LAASG 159
AA G
Sbjct: 281 YAAIG 285
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQ 62
+++ G Q + L+ S D A +FS H V TW MI + ++ +
Sbjct: 332 VVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKK 391
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G RP+ FT+ V+ +SL ++H +KA + + V + L+D
Sbjct: 392 AVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL----SQLHAQIIKAYYEKVPSVATALLD 447
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+K G+V ++F + + +V+W+ M++GLA + D + A
Sbjct: 448 AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKA 489
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSF--------YGKTD---HALLVFSQIRCPHVFTWNLM 50
+ II G+ ++V+ + +F Y K++ A VF + TWN+M
Sbjct: 218 ESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIM 277
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G L+ +++ M G + + F +K C + K++H VK G+
Sbjct: 278 IGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY 337
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGD 160
+++ LM Y KC VD K+F +VV+WT MI G + +
Sbjct: 338 EFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNN 388
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G SN + LL + S G + A VF++ + +WN MI G + +AL
Sbjct: 533 VKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKAL 592
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDL 123
++ +M G D TF V+ AC + +E+G++ + +K + S ++DL
Sbjct: 593 EVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDL 652
Query: 124 YLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
Y + G D + + M S W T+++ +L+
Sbjct: 653 YSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLE 692
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD G + VF I + W+ M+ L S +A+ ++ ++ G +P+
Sbjct: 445 LLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPN 504
Query: 79 KFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++TF VI AC +S A +E GK++H AVK+G S + V S L+ +Y K G+++ K+F
Sbjct: 505 EYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVF 564
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R +VSW +MI+G GD A
Sbjct: 565 TRQEERDIVSWNSMITGYGQHGDAKKA 591
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 82/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++ L L + L S + +A +F + + +N ++ + + +AL
Sbjct: 30 IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + +G D T +K C G++VH ++K+GF D+ V ++L+D+Y
Sbjct: 90 HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY 149
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+K D + GR +FD+M +++VVSWT+++SG A +G
Sbjct: 150 MKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNG 184
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ +V +W ++ +G + + + L N M G P+ FTF V+ A
Sbjct: 161 IFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESI 220
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
IE G +VH + VK GF FV + L+ +YLK V +FD M VR V+W MI G
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGG 280
Query: 155 LAASG 159
AA G
Sbjct: 281 YAAIG 285
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQ 62
+++ G Q + L+ S D A +FS H V TW MI + ++ +
Sbjct: 332 VVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEK 391
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G RP+ FT+ V+ +SL ++H +KA + + V + L+D
Sbjct: 392 AVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL----SQLHAQIIKAYYEKVPSVATALLD 447
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y+K G+V ++F + + +V+W+ M++GLA + D + A
Sbjct: 448 AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKA 489
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSF--------YGKTD---HALLVFSQIRCPHVFTWNLM 50
+ II G+ ++V+ + +F Y K++ A VF + TWN+M
Sbjct: 218 ESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIM 277
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I G L+ +++ M G + + F +K C + K++H VK G+
Sbjct: 278 IGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY 337
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
+++ LM Y KC VD K+F +VV+WT MI G + + + A
Sbjct: 338 EFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKA 392
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 4/161 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G SN + LL + S G + A VF++ + +WN MI G + +AL
Sbjct: 533 VKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKAL 592
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMD 122
++ +M G D TF V+ AC + +E+G++ + +K + D ++ S ++D
Sbjct: 593 EVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIK-DYHIDKKIEHYSCMVD 651
Query: 123 LYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLD 162
LY + G D + + M S W T+++ +L+
Sbjct: 652 LYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLE 692
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALT-IDGSSL 61
+++ + + L+ K ++L F ++A + S P+ +++N MIR LT I
Sbjct: 56 QMLLHSVEKPNFLIPKAVELGDF----NYASFLLSVTEEPNHYSFNYMIRGLTNIWNDHE 111
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL LY M +G +PD FT+ FV AC I G+ VH K G RD + +L+
Sbjct: 112 GALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVGLERDDHISHSLI 171
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V RK+FD++ R VSW +MISG + +G
Sbjct: 172 MMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAG 209
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GLS L KL+ + G D A VF+Q+ WN MI + +G S +A
Sbjct: 260 KIGLST--FLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFK 317
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M G PD T V+ AC + A+E GK + A + +++V + L+D+Y
Sbjct: 318 LFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYG 377
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ ++F+ M V++ +W MI+ A G A
Sbjct: 378 KCGHIEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEA 416
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+ + + G +A VF +I +WN MI + G + A
Sbjct: 155 LFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDA 214
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M GF PD+ T ++ AC + G+ + +A+ F+ S L+ +
Sbjct: 215 MDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITM 274
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+D R++F++M + V+W MI+ + +G A
Sbjct: 275 YGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEA 315
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L YGK H AL VF + + TWN MI A G + +ALLL++ M P
Sbjct: 372 LVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQMPVP---PS 428
Query: 79 KFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
TF V+ AC+ + +++G + H ++ G + + ++DL + G +D
Sbjct: 429 DVTFIGVLSACVHAGLVDQGCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLD 482
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 84/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G +L+ L+D+ + G D+A VF ++ V +W ++ +GS +A
Sbjct: 367 IVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEA 426
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G PD+ V+ AC +E GK+VH +K+G + V ++L+ +
Sbjct: 427 LRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSM 486
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ K+FD M ++ V++WT +I G A +G
Sbjct: 487 YAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNG 522
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
HV W M+ + +G +A+ + M G ++FTFP ++ AC + A G +VH
Sbjct: 205 HVL-WTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVH 263
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G V++GF ++FV S L+D+Y KCGD+ R+M + M V VSW +MI G G
Sbjct: 264 GCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQG 320
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G + + L+D+ S G +A + + +WN MI G +A
Sbjct: 266 IVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEA 325
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ +M + D+FT+P V+ + + VH L VK GF V + L+D+
Sbjct: 326 LSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDM 385
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G D +F+KM + V+SWT++++G +G + A
Sbjct: 386 YAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEA 426
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ + A +F + TW+ +I G ++AL L+ M G RP++FT+ V+
Sbjct: 86 GRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVL 145
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD-KMRVRSV 145
+ C + +EKGK++H A+K F + FV + L+D+Y KC + +F+ R+
Sbjct: 146 RVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNH 205
Query: 146 VSWTTMISGLAASGD 160
V WT M++G + +GD
Sbjct: 206 VLWTAMVTGYSQNGD 220
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 23/39 (58%)
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG VD RK+FD M R SW TMI A SG L+ A
Sbjct: 53 KCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEA 91
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI---RCPH---VFTWNLMIRALT----ID 57
GL V +LL LC+ G A L +++ R PH V +N ++R
Sbjct: 57 GLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGG 116
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G + +A ++ M+ G PD +TF ++KAC ++ A E+G++ HG+AVKAG + +V
Sbjct: 117 GCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVA 176
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
TL+++Y +CGDV R MFD+M VVS+ MI+
Sbjct: 177 PTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITA 213
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G + + + L+++ + G A ++F ++ V ++N MI A +AL
Sbjct: 165 VKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEAL 224
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+L+ M G +P T V+ AC A+E G+ +H K + V + L+D+Y
Sbjct: 225 VLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMY 284
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG ++ +F M R +W+ M+ A G
Sbjct: 285 AKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHG 319
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A+ VF + W++M+ A G +A+ ++ M G +PD
Sbjct: 280 LIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPD 339
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF V+ AC S + +G + + G + + DL + G ++ K D
Sbjct: 340 DVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFID 399
Query: 139 KMRVR-SVVSWTTMISGLAASGDLD 162
++ ++ + + W T++S A GD+D
Sbjct: 400 ELPIKPTAILWRTLLSACAGHGDVD 424
>gi|110738160|dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana]
Length = 328
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 27 GKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
GK D A+ + ++ VFTW MI L +G QAL ++ M G P+ T
Sbjct: 125 GKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTI 184
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
+ AC I +G EVH +AVK GF D+ V ++L+D+Y KCG ++ RK+FD ++
Sbjct: 185 MSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKN 244
Query: 143 RSVVSWTTMISGLAASG 159
+ V +W +MI+G +G
Sbjct: 245 KDVYTWNSMITGYCQAG 261
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ +G PD F FP +++ C +E GK +H + +K G S + V ++++ +Y KCG+
Sbjct: 1 MMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGE 60
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D K F +MR R V++W +++ +G + A
Sbjct: 61 LDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEA 95
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D L+ L+D+ S GK + A VF ++ V+TWN MI G +A
Sbjct: 208 VKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAY 267
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
L+ M RP+ T+ +I S I+ G E + + +D VQ
Sbjct: 268 ELFTRMQDANLRPNIITWNTMI-----SGYIKNGDEGEAMDLFQRMEKDGKVQ 315
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G+S+ + +L + + G+ D A F ++R V WN ++ A +G +A
Sbjct: 36 VIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEA 95
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKA------CIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ L M G P T+ +I C A++ + + E G+ + D+F
Sbjct: 96 VELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGI------TADVFTW 149
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVV-SWTTMISGLAA 157
+ ++ + G MF KM + VV + T++S ++A
Sbjct: 150 TAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSA 190
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN MIR + + +A++LY MI G P+ FTFPF++ +C ++E G EVH
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K GF D+FV++ L+ LY G+++ R +FD+ VR +VS+ TMI G A ++A
Sbjct: 62 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II++G +D + L+ L S +G + A +F + + ++N MI+ A
Sbjct: 61 IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
L L+ M D+ T V+ AC A + GK ++ ++ G F+++ + + +MD
Sbjct: 121 LCLFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176
Query: 123 LYLKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASG 159
+Y KCG +D ++F ++ +++ + +MI+GLA G
Sbjct: 177 MYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHG 215
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 2 QKIIRYGLSN-DQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDG 58
+ I G+ N + +L ++D+ + G D AL +F ++ F +N MI L G
Sbjct: 156 HQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHG 215
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQ 117
A+ ++ +I G +PD+ TF V+ AC S IE+GK++ A G M
Sbjct: 216 LGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHY 275
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
++DL + G ++ + KM + V W ++S G++
Sbjct: 276 GCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNV 320
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ + + A VF +I +V +W MI +G + LLL+N M
Sbjct: 199 DGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMR 258
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
+ P ++T VI AC A + +G+ +HG +K G + F+ + L+D+Y+KCG++D
Sbjct: 259 QDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELD 318
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGD-LDA 163
R +FD++ +V WTTMI G +G+ LDA
Sbjct: 319 HARCVFDELSYIDLVLWTTMIVGYTQNGNPLDA 351
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL ++ L+D+ + A +F +I V WN MI + AL
Sbjct: 394 VKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDAL 453
Query: 65 LLYNLMICNGFRPDKFTFPFVIKA--CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+L+ M G PD + + A C+ L I GK +HG AVK F +++V + L++
Sbjct: 454 MLFKQMSLQGSSPDAISVVNALSASVCLGDLLI--GKSIHGYAVKHAFVSNIYVDTALLN 511
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
LY KCGD+ R++FD+M R+ V+W MI G GD
Sbjct: 512 LYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGD 549
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ GL ++ + LLD+ G+ DHA VF ++ + W MI T +G+ L
Sbjct: 291 SVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLD 350
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ P+ T V+ A + GK +HGLAVK G V + L+D
Sbjct: 351 ALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVD 410
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KC V ++F ++ + VV+W +MISG A + D A
Sbjct: 411 MYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDA 452
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KLL + G A +VF P +++ M+ L A+ L++ M RP
Sbjct: 102 KLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDM--RRRRP 159
Query: 78 -----DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
D F +KACI S G+ +H A+K G + D FV ++L+D+Y K D++
Sbjct: 160 CPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVGGA-DGFVMNSLVDMYAKAEDLEC 218
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
RK+F+++ R+VVSWT+MISG +G
Sbjct: 219 ARKVFERIPDRNVVSWTSMISGCVQNG 245
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+ +D + L+D+ S G + A VF Q+ WN +I + + G S +AL
Sbjct: 246 LKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEAL 305
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
LY M +G D FT VI+ C ++E K+ H V+ GF+ D+ + L+D Y
Sbjct: 306 SLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFY 365
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G ++ R +F++MR ++V+SW +I+G G A
Sbjct: 366 SKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEA 405
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G D ++ ++L + G A +F ++ V +W M+ L G+ +A
Sbjct: 144 MINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEA 203
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M TF +I+A ++ GK++H A+K G D FV L+D+
Sbjct: 204 FRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDM 263
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ +FD+M ++ V W ++I+ A G + A
Sbjct: 264 YSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEA 304
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 51 IRALTIDGSSLQALLLYNLMIC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108
I L + +A+ L+ ++ +G+ T+ ++ AC+ +I K V + +
Sbjct: 88 IEKLVVCNRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINS 147
Query: 109 GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GF D++V + ++ +++KCG + RK+FD+M + V SW TM+ GL +G+ A
Sbjct: 148 GFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEA 203
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G + D + L+D S +G+ + A VF+++R +V +WN +I G +A
Sbjct: 346 LVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEA 405
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ ++ M+ G P TF V+ AC S ++G E+
Sbjct: 406 VEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEI 443
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 7/167 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ L D + KL+ S A+ VF+ + P+V +N +IRA + S
Sbjct: 43 QVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRS 102
Query: 63 ALLLYNL---MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L +N M NG PD FT+PF++KAC ++ + +H K GF D+FV ++
Sbjct: 103 --LPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNS 160
Query: 120 LMDLYLKCGD--VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D Y +CG+ +DG +F M R VV+W +MI GL G+L A
Sbjct: 161 LIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGA 207
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 27 GKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G D A ++F RCP +V W +I G + +A LY M G RPD
Sbjct: 264 GDMDMARMLFD--RCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLS 321
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ AC S + GK +H + F V + +D+Y KCG +D +F M +
Sbjct: 322 ILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKK 381
Query: 145 -VVSWTTMISGLAASGDLDAA 164
VVSW +MI G A G + A
Sbjct: 382 DVVSWNSMIQGFAMHGHGEKA 402
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 41/163 (25%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT--DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ + G D + L+D S G D A+ +F + V TWN MI L G
Sbjct: 146 VEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQ 205
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L++ M PD RDM +T++
Sbjct: 206 GACKLFDEM------PD---------------------------------RDMVSWNTML 226
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D Y K G++D ++F++M R++VSW+TM+ G + GD+D A
Sbjct: 227 DGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMA 269
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQALLLYNLMICN 73
++ +D+ + G D A VFS + V +WN MI+ + G +AL L++ M+
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQE 412
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKE 100
GF PD +TF ++ AC + + +G++
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRK 439
>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
Length = 513
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++Y +D + LLD+ + G+ D A+ VF Q+ + +WN +I G L
Sbjct: 68 VKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTL 127
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M NGF FT+ V A A+E+GK VH +K+G FV +T++D+Y
Sbjct: 128 LMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMY 187
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + RK+FD + + +V+W +M++ A G
Sbjct: 188 AKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYG 222
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+W +I + +AL L M+ F+P+ FTF ++KA AS + G+++H L
Sbjct: 8 SWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALT 67
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
VK + D++V S L+D+Y +CG +D +FD++ ++ VSW +I+G A GD
Sbjct: 68 VKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 122
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + +LD+ + G A VF + + TWN M+ A G +A
Sbjct: 168 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREA 227
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M G ++ TF ++ AC +++GK+ + + ++ T++DL
Sbjct: 228 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDL 287
Query: 124 YLKCG 128
+ G
Sbjct: 288 LGRAG 292
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R +D + L+D+ S G+ ++A VF ++ +WN +I +G +A
Sbjct: 177 VYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEA 236
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
L ++ MI G PD+ T V+ AC AI++G+++H VK F D+ + + L+D
Sbjct: 237 LKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLD 296
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KC ++ R +FD M +RSVVS T+M+SG A + + A
Sbjct: 297 MYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVA 338
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
K A +FS + V TWN +I T +G + +AL+L+ L+ P +TF ++
Sbjct: 334 KVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLN 393
Query: 88 ACIASLAIEKGKEVHGLAVKAGF------SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
AC ++ G++ H +K GF D+FV ++L+D+Y+KCG V+ G ++F M
Sbjct: 394 ACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHML 453
Query: 142 VRSVVSWTTMISGLAASG 159
+ VSW MI G A +G
Sbjct: 454 EKDCVSWNAMIVGYAQNG 471
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 12 DQLLVRKLLD----LCSFY--GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
D++L R + +C+F G D A+ +F ++ +WN MI G +AL+
Sbjct: 78 DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+ M +GF ++++F + AC ++ G ++H L ++ + D+++ S L+D+Y
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG V+ + +FD+M VRS VSW ++I+ +G +D A
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEA 236
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D F ++ C S + VH +K+ F+ + F+Q+ L+D+Y KCG VD RK+F
Sbjct: 18 DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D+M R++ SW ++I SG LD A
Sbjct: 78 DRMLERNIFSWNSIICAFTKSGFLDDA 104
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 20/160 (12%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+YG +D + L+D+ G ++ VF + +WN MI +G +AL
Sbjct: 419 QYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALE 478
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM---- 121
++ M+ +G PD T V+ AC + +++G+ + R M Q LM
Sbjct: 479 VFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRY---------YFRSMTAQHGLMPLKD 529
Query: 122 ------DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
DL + G ++ + + ++M ++ + W ++++
Sbjct: 530 HYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAA 569
>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
Length = 829
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 25 FYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81
FY K D A L+FS++R +VF+W +I G AL+ + M+ NG PD F
Sbjct: 111 FYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFV 170
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
P V KAC A G+ VHG KAG +FV S+L D+Y KCG +D RK+FD++
Sbjct: 171 VPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIP 230
Query: 142 VRSVVSWTTMISGLAASG 159
R+VV+W ++ G +G
Sbjct: 231 DRTVVAWNALMVGYVQNG 248
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL + + L D+ G D A VF +I V WN ++ +G + +A
Sbjct: 194 VAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQNGMNQEA 253
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L + M G P + T + A IE+GK+ H +A+ G D + +++++
Sbjct: 254 IRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNF 313
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G ++ +FD+M + VV+W +ISG G ++ A
Sbjct: 314 YCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDA 354
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D +L +L+ G ++A ++F ++ V TWNL+I G A+ +
Sbjct: 299 GLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMC 358
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
LM D T ++ A + ++ GKEV ++ GF D+ + ST +++Y KC
Sbjct: 359 QLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKC 418
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + +K+F+ + ++ W T+++ A G
Sbjct: 419 GSIVDAKKVFNSTVEKDLILWNTLLAAYAEPG 450
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 27 GKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
G+ + A +F Q++ P++ +W M+ L +G S +A++ M +G R + F+
Sbjct: 485 GQVNEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSI 544
Query: 83 PFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ AC ++ G+ +HG ++ S + ++++L+D+Y KCGD+ ++F
Sbjct: 545 TVALSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKL 604
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+ + MIS A G++ A
Sbjct: 605 YSELPLYNAMISAYALYGNVKEA 627
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
P ++ + +L G +AL L M R + +++ C+ + G+++
Sbjct: 28 PPSISYFHRVSSLCKKGEIREALGLVTEMGSRNVRIGPEIYGEILQGCVYERDLSTGQQI 87
Query: 102 HGLAVKAG--FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
H +K G ++++ ++++ L+ Y KC ++ + +F K+R R+V SW +I
Sbjct: 88 HARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRARNVFSWAAII 140
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR+G +D +L +++ + G A VF+ + WN ++ A G S +AL
Sbjct: 397 IRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEAL 456
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G P+ T+ VI + + + + + K++ +G S ++ +T+M+
Sbjct: 457 RLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPNLISWTTMMNGL 516
Query: 125 LKCGDVDGG----RKMFDKMRVRSVVSWTTMISGLA 156
++ G + RKM + +V S T +S A
Sbjct: 517 VQNGCSEEAIVYLRKMQESGLRLNVFSITVALSACA 552
>gi|255539733|ref|XP_002510931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550046|gb|EEF51533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 18 KLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75
KLL L + G D A +F ++ R F WN +I + G A+ LY M
Sbjct: 133 KLLRLYASCGYMDEAHQMFDEMSNRDESAFAWNSLIAGYSELGLYEDAIALYFQMDEEYV 192
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PD+FTFP V+KAC I+ G+ VH ++ GF+ D F + L+D+Y KCGD+ R
Sbjct: 193 EPDEFTFPRVLKACGGLGLIQVGEAVHRDLIRLGFANDRFASNALVDMYAKCGDIVKARS 252
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+F+KM + VSW +M++G G
Sbjct: 253 IFEKMASKDSVSWNSMLTGYVRHG 276
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G +ND+ L+D+ + G A +F ++ +WN M+ G ++A
Sbjct: 222 LIRLGFANDRFASNALVDMYAKCGDIVKARSIFEKMASKDSVSWNSMLTGYVRHGLIIEA 281
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
M+ +G D ++ A ++S + G ++HG ++ G D+ + ++L+ +
Sbjct: 282 FHTGRRMLQDGLELDSVAISSLL-ANVSSFKL--GVQIHGWILRRGMQWDLSIANSLIVM 338
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y G + R +FD M+ R VVSW ++IS
Sbjct: 339 YSSNGKLVQTRWLFDNMQERDVVSWNSIISA 369
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 49 LMIRALTIDGSSLQAL--LLYNLM--ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104
L+I T + LQAL ++ +L I G + D +++ C +I+ G +H L
Sbjct: 59 LLINLNTYTQTKLQALDDVIKDLESSIGKGIKIDTQIISSLLETCYRLNSIDHGMRIHRL 118
Query: 105 AVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM--RVRSVVSWTTMISGLAASG 159
+ ++ V S L+ LY CG +D +MFD+M R S +W ++I+G + G
Sbjct: 119 IPTSILRKNTGVSSKLLRLYASCGYMDEAHQMFDEMSNRDESAFAWNSLIAGYSELG 175
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ +D + L+D+ + G A VFS+++ + +WN MI + + +AL L+
Sbjct: 383 MQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFV 442
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M N +P+ T ++ AC + A+E+G+E+HG ++ GFS D V + L+D+YLKCG
Sbjct: 443 EMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCG 501
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ R +FD + + +VSWT MI+G G
Sbjct: 502 ALGLARLLFDMIPEKDLVSWTVMIAGYGMHG 532
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 79/154 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ + L LLD+ S G + A+ VF + V +W MI +G S ++
Sbjct: 278 IKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSV 337
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M G PD FT ++ AC + +E GK+VH + D+FV + LMD+Y
Sbjct: 338 RLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMY 397
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG + +F +M+V+ +VSW TMI G + +
Sbjct: 398 AKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKN 431
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 74/132 (56%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ + A +F ++ V +WN MI +G S + L L+ M+ G D T V+
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVA 259
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
C + + G+ +HG A+KA F +++ + + L+D+Y K G+++ ++F+ M RSVVS
Sbjct: 260 GCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS 319
Query: 148 WTTMISGLAASG 159
WT+MI+G A G
Sbjct: 320 WTSMIAGYAREG 331
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
T+ V++ C +I+ G+ +H + D + S L+ +Y+ CGD+ GR++FDK+
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162
Query: 141 RVRSVVSWTTMISGLAASGDL 161
V W +++G A G+
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNF 183
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G S D+ + L+D+ G A L+F I + +W +MI + G +A
Sbjct: 478 ILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEA 537
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ +N M +G PD+ +F ++ AC S +++G
Sbjct: 538 IAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG 572
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 111 SRDMFVQSTLMDLYLKCGD------------------VDGGRKMFDKMRVRSVVSWTTMI 152
+ +F+ + LM+ Y K G+ V+ RK+FD++ R V+SW +MI
Sbjct: 164 NEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMI 223
Query: 153 SGLAASG 159
SG ++G
Sbjct: 224 SGYVSNG 230
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 79/140 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ + G D A+LVF + V TW +I A +G S +A+ L++ M G PD
Sbjct: 39 LLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPD 98
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT V+ AC + ++E GK+VH + ++FV + LMD+Y KCG ++ +F
Sbjct: 99 IFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFL 158
Query: 139 KMRVRSVVSWTTMISGLAAS 158
+M V+ ++SW TMI G + +
Sbjct: 159 EMPVKDIISWNTMIGGYSKN 178
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+ ++ + L+D+ + G + A VF ++ + +WN MI + + +AL L+
Sbjct: 130 MQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFG 189
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M+ +PD T ++ AC + ++++GKEVHG ++ GF D V + L+D+Y+KCG
Sbjct: 190 DMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCG 248
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FD + + +++WT MI+G G
Sbjct: 249 VPVLARLLFDMIPTKDLITWTVMIAGYGMHG 279
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++AC + G+ VHG VKA +TL+D+Y KCG +DG +FD M VR+
Sbjct: 4 ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63
Query: 145 VVSWTTMISGLAASGDLDAA 164
VV+WT++I+ A G D A
Sbjct: 64 VVTWTSLIAAYAREGLSDEA 83
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +DQ + L+D+ G A L+F I + TW +MI + G A
Sbjct: 225 ILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNA 284
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+ +N M G PD+ +F ++ AC S +++G + + + + + + ++D
Sbjct: 285 ITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVD 344
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G + K M + + W ++SG D+ A
Sbjct: 345 LLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLA 387
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A +F ++ F WN M++A +++A LY M+ + + P+ FTF FVI+ACI
Sbjct: 64 YAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACI 123
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
++ G HG VK G+ FVQ+ L+ LY CG +D R MFD R VV+WT
Sbjct: 124 DVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTC 183
Query: 151 MISGLAASGDL 161
+ISG SG +
Sbjct: 184 LISGYLNSGQV 194
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F ++ + +W +I G +AL ++ M +GFR ++ + + AC A
Sbjct: 200 LFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGA 259
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+++G+ +H + S D + + L+D+Y KCG ++ +FD+M R V ++T +ISG
Sbjct: 260 LDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISG 319
Query: 155 LAASGDLDAA 164
LA +AA
Sbjct: 320 LANHDKSEAA 329
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R+ +S D++L L+D+ + G + A VF ++ V+ + +I L S A
Sbjct: 270 VKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAA 329
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L+N M G P++ TF V+ AC +++G + ++ + + L+D
Sbjct: 330 IDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVD 389
Query: 123 LYLKCGDVDGGRKMFDKMRVR 143
L + G ++ +++ +M ++
Sbjct: 390 LLGRAGKIEEAKQVVREMPLQ 410
>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
Length = 641
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 86/152 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR GL D + L+++ S G + A +F ++ + +WN M+ + T +G S +
Sbjct: 72 QIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEK 131
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL+L+ M G +FT V+ AC A + + K++HG A+K ++FV + L+D
Sbjct: 132 ALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLD 191
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+Y KCG V +F+ M RS V+W++M++G
Sbjct: 192 VYAKCGLVKDASLVFECMPERSDVTWSSMVAG 223
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
AIE G H ++ G D + LM++Y KCG V+ RK+FD+M VRS+VSW TM+
Sbjct: 63 AIE-GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVG 121
Query: 154 GLAASGDLDAA 164
+GD + A
Sbjct: 122 SHTQNGDSEKA 132
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 78/152 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ L ++ + LLD+ + G A LVF + TW+ M+ + +AL
Sbjct: 175 LKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEAL 234
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+L++ G ++FT + AC A A+ +GK+V + K G ++FV S+L+D+Y
Sbjct: 235 VLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMY 294
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
KCG ++ +F + ++VV W M+SG +
Sbjct: 295 AKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFS 326
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G+ ++ ++ L+D+ + G + A +VFS + +V WN M+ + SL+A
Sbjct: 275 LCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEA 334
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
++ + M G P++ T+ V+ AC +EKG++ L ++ S ++ S ++D
Sbjct: 335 MIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVD 394
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ + G + + + D+M + S W ++++ +L+ A
Sbjct: 395 ILGRAGLLHEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXA 437
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR + D L L+DL GK + A +F + +WN+MI +G A
Sbjct: 334 IIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDA 393
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + PD TF V+ AC A+EKG+E+H L V+ + V L+D+
Sbjct: 394 LRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDM 453
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V+ +F + R +VSWT+MI+ + G
Sbjct: 454 YAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHG 489
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++++ G D + L+D+ G+ + A+ VF Q+ V WN MI G +
Sbjct: 231 KELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGI 290
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ L+ M G +P T + AC S + +GK VHG ++ D+F+ S+LM
Sbjct: 291 SCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLM 350
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
DLY KCG V+ +F M + VSW MISG G L
Sbjct: 351 DLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKL 390
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 86/157 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D ++ L+ + + + + A+ +F ++ V WN +I G +A
Sbjct: 132 LVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + +M GF PD T I +C L +++G+E+H V +GF D FV + L+D+
Sbjct: 192 LRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDM 251
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KCG ++ ++F++M ++VV+W +MI+G GD
Sbjct: 252 YGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGD 288
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSS 60
QK++ GL ND + + L+ L D+A VF I P + N ++ T +
Sbjct: 27 QKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMY 86
Query: 61 LQALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+AL L++ ++C +PD +T+P V+KAC + G+ +H VK G D+ V S+
Sbjct: 87 DEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSS 146
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y KC + + K+FD+M + V W T+IS SG + A
Sbjct: 147 LVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEA 191
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+ L N+++++ LLD+ + G + A VF + + +W MI A G +A
Sbjct: 435 IVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEA 494
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ M+ + +PD+ TF ++ AC + ++ G
Sbjct: 495 LELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDG 529
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+++A + S ++++GK +H V G D++V L+ LY+ C D + +FD
Sbjct: 9 LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFD 62
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 20/173 (11%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP----HVFTW-------NLMI 51
+++R L ++ L+V K + F+GK + IR P F W NL+I
Sbjct: 106 QLLRSTLVDNDLVVTKAAN---FFGKH------VTDIRYPCNFLKQFDWSFSSFPCNLII 156
Query: 52 RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS 111
A+ +Y ++ NGF PD +T P V+K+C I + K++H LAVK
Sbjct: 157 SGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDLW 216
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DMFVQ++ + +Y CGD G K+FD M VR VVSWT +ISG +G + A
Sbjct: 217 CDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDA 269
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + + + S G T A VF + V +W +I G A+ L+ M
Sbjct: 218 DMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRM- 276
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
P+ TF ++ AC + GK +HGL K +++ V +TLMD+Y+KC V
Sbjct: 277 --DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVT 334
Query: 132 GGRKMFDKMRVRSVVSWTTMISGL 155
+++FD++ + +VSWT+MISGL
Sbjct: 335 DAKRLFDEIPEKDIVSWTSMISGL 358
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 77/156 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ +Y + ++ L+D+ A +F +I + +W MI L ++
Sbjct: 308 VSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQES 367
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ +GF PD V+ AC + ++ G+ VH + D+ + ++L+D+
Sbjct: 368 LDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDM 427
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ ++MF+ + +++ +W I GLA +G
Sbjct: 428 YAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAING 463
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A +F+ + ++ TWN I L I+G +AL + ++ +G RP+
Sbjct: 424 LIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPN 483
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKM 136
+ TF V AC S +++G+ ++ +++ ++DL + V+ ++
Sbjct: 484 EITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMEL 543
Query: 137 FDKM 140
+KM
Sbjct: 544 INKM 547
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + L+ + + G + A +F + ++ TWN +I ++G +AL
Sbjct: 22 IRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEAL 81
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD FT ++ AC A+ G+ H VK G ++ + L+DLY
Sbjct: 82 TLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLY 141
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG + K+FD+M +SVVSWT++I GLA +G
Sbjct: 142 AKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 176
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 48/73 (65%)
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+A + + +G++VH +A++ GF +FVQ+TL+ +Y CG + K+F+ M R++V
Sbjct: 3 RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62
Query: 147 SWTTMISGLAASG 159
+W ++I+G A +G
Sbjct: 63 TWNSVINGYALNG 75
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + LLDL + G A VF ++ V +W +I L ++G +A
Sbjct: 122 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 181
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFV 116
L L+ + G P + TF V+ AC +++G KE +G+ K
Sbjct: 182 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEH------ 235
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDL 161
++DL + G V + M ++ + V W T++ G L
Sbjct: 236 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHL 281
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+ +WN +I A+ GS +AL +Y M+ G P FT V+ AC A A++ G+ H
Sbjct: 5 NAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCH 64
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
GLAVK G FV++ L+ +Y KCG V ++FD M + VS+T M+ GLA G +D
Sbjct: 65 GLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVD 124
Query: 163 AA 164
A
Sbjct: 125 DA 126
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R L ND + L+D+ S G+ AL++F+ + V WN MI L I S +A
Sbjct: 344 VRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAF 403
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M NG P + ++ +I C +I +G+++H +K G+ ++++V +L+D+Y
Sbjct: 404 DFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMY 463
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G++D R F+ M V+++V+W MI G A +G
Sbjct: 464 AKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNG 498
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ +L C A +F +I P V TWN ++ + + + L+
Sbjct: 246 GFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLF 305
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD+ T ++ +C E GK+VH +V+ DMFV S L+D+Y KC
Sbjct: 306 RRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKC 365
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
G V +F+ M R VV W +MISGLA
Sbjct: 366 GQVGIALIIFNMMTERDVVCWNSMISGLA 394
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL Q + LL + + G A+ +F + P+ ++ M+ L G+ AL
Sbjct: 68 VKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDAL 127
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLA--------IEKGKEVHGLAVKAGFSRDMFV 116
L+ M G R D V+ AC + A I+ + +H L V+ GF D V
Sbjct: 128 RLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHV 187
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+DLY K +D K+F+ + S+VSW +I+G G
Sbjct: 188 GNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLG 230
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 35/151 (23%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G +DQ + L+DL + K D A+ VF + + +WN++I G +A
Sbjct: 176 VVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERA 235
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M +GF P++ T+ ++ +CI
Sbjct: 236 MEVLEFMQESGFEPNEVTYSNMLASCI--------------------------------- 262
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K DV R MFDK+ SV +W T++SG
Sbjct: 263 --KARDVPSARAMFDKIPKPSVTTWNTLLSG 291
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G + + L+D+ + G D A L F+ + ++ WN MI +G +
Sbjct: 443 QVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEK 502
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK 97
A+ L+ M+ +PD TF V+ C S +++
Sbjct: 503 AVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDE 537
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+++ A +F ++ V +WN MI +G + + L +Y M+ G D T V+
Sbjct: 62 RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
C S + GK VH LA+K+ F R + +TL+D+Y KCGD+DG ++F+KM R+VVS
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181
Query: 148 WTTMISGLAASGDLDAA 164
WT+MI+G G D A
Sbjct: 182 WTSMIAGYTRDGWSDGA 198
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 74/137 (54%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ S G D AL VF ++ +V +W MI T DG S A++L M G + D
Sbjct: 154 LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLD 213
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ AC S +++ GK+VH + ++FV + LMD+Y KCG ++G +F
Sbjct: 214 VVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFS 273
Query: 139 KMRVRSVVSWTTMISGL 155
M V+ ++SW TM+ L
Sbjct: 274 TMVVKDIISWNTMVGEL 290
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 21/151 (13%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
++++ + L+D+ + G + A VFS + + +WN M+ L
Sbjct: 245 MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGEL-------------- 290
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
+PD T ++ AC + A+E+GKE+HG ++ G+S D V + L+DLY+KCG
Sbjct: 291 -------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG 343
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ R +FD + + +VSWT MI+G G
Sbjct: 344 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 374
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G S+D+ + L+DL G A L+F I + +W +MI + G +A
Sbjct: 320 ILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEA 379
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
+ +N M G PD+ +F ++ AC S +E+G + +K F+ + ++ + ++
Sbjct: 380 IATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI-MKNDFNIEPKLEHYACMV 438
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + G++ K + + + + W ++ G D++ A
Sbjct: 439 DLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 482
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ Y CGD+ GR++FD M ++V W M+S A GD +
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 46
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
KL + +GK H+L +F Q P +F + I +I+G QA LLY ++ + P
Sbjct: 69 KLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINP 128
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
++FTF ++K+C + + GK +H +K G D +V + L+D+Y K GDV +K+F
Sbjct: 129 NEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVF 184
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D+M RS+VS T MI+ A G+++AA
Sbjct: 185 DRMPERSLVSSTAMITCYAKQGNVEAA 211
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G + A +F + + +WN+MI G AL+L+ ++ G +PD+ T
Sbjct: 206 GNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAA 265
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC A+E G+ +H + ++ V + L+D+Y KCG ++ +F+ + +
Sbjct: 266 LSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 325
Query: 146 VSWTTMISGLAASG 159
V+W MI+G A G
Sbjct: 326 VAWNAMIAGYAMHG 339
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRP 77
L+D+ S G + A+LVF+ + WN MI + G S AL L+N M G +P
Sbjct: 300 LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQP 359
Query: 78 DKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
TF ++AC + + +G + + + G + L+ L + G + +
Sbjct: 360 TDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYET 419
Query: 137 FDKMRVRS-VVSWTTMISGLAASGDL 161
M + + V W++++ GD
Sbjct: 420 IKNMNMDADSVLWSSVLGSCKLHGDF 445
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ + A +F ++ V +WN MI +G + + L +Y M+ G D T V+
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLV 259
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
C S + GK VH LA+K+ F R + +TL+D+Y KCGD+DG ++F+KM R+VVS
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319
Query: 148 WTTMISGLAASGDLDAA 164
WT+MI+G G D A
Sbjct: 320 WTSMIAGYTRDGRSDGA 336
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ S G D AL VF ++ +V +W MI T DG S A+ L M G + D
Sbjct: 292 LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLD 351
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
++ AC S +++ GK+VH ++FV + LMD+Y KCG +DG +F
Sbjct: 352 VVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFS 411
Query: 139 KMRVRSVVSWTTMISGL 155
M V+ ++SW TMI L
Sbjct: 412 TMVVKDIISWNTMIGEL 428
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
+ ++ + L+D+ + G D A VFS + + +WN MI L
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGEL------------- 428
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+PD T ++ AC + A+E+GKE+HG ++ G+S D V + L+DLY+KC
Sbjct: 429 --------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + R +FD + + +VSWT MISG G
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHG 512
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+C + T+ V++ C S ++ GK+VH + + D + L+ LY CGD+
Sbjct: 91 MCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDL 150
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GR++FD M ++V W M+S A GD +
Sbjct: 151 KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G S+D+ + L+DL G A L+F I + +W +MI + G +A
Sbjct: 458 ILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEA 517
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ +N M G PD+ +F ++ AC S +E+G
Sbjct: 518 IATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 552
>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
Length = 1260
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 66/121 (54%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V WNL IR +++LLL+ M GF P+ FTFPFV KAC + + VH
Sbjct: 623 VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 682
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
+K+ F D+FV + +D+++KC VD K+F++M R +W M+SG SG D
Sbjct: 683 HLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDK 742
Query: 164 A 164
A
Sbjct: 743 A 743
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Query: 24 SFYGKT---DHALLVFSQIRCPH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
S YGK D A LVF I V +WN M +A ++ G + A LY LM+ F+PD
Sbjct: 802 STYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 861
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + +C + +G+ +H A+ G +D+ +T + +Y K D R +FD
Sbjct: 862 LSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD 921
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R+ VSWT MISG A GD+D A
Sbjct: 922 IMTSRTCVSWTVMISGYAEKGDMDEA 947
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I G D + + + S T A L+F + +W +MI G +AL
Sbjct: 889 IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 948
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDL 123
L++ MI +G +PD T +I C ++E GK + A G RD + + + L+D+
Sbjct: 949 ALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDM 1008
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R +FD ++VV+WTTMI+G A +G
Sbjct: 1009 YSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNG 1044
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A VF ++ TWN M+ G + +A L+ M N PD T +I++
Sbjct: 710 DYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSA 769
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RSVVS 147
+++ + +H + ++ G + V +T + Y KCGD+D + +F+ + R+VVS
Sbjct: 770 SFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVS 829
Query: 148 WTTMISGLAASGD 160
W +M + G+
Sbjct: 830 WNSMFKAYSVFGE 842
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 7 YGLSNDQLLV-RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
YG D +++ L+D+ S G A +F V TW MI ++G L+AL
Sbjct: 992 YGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALK 1051
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMDLY 124
L++ MI ++P+ TF V++AC S ++EKG E H + S + S ++DL
Sbjct: 1052 LFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLL 1111
Query: 125 LKCGDVDGGRKMFDKMRVR 143
+ G ++ ++ M +
Sbjct: 1112 GRKGKLEEALELIRNMSAK 1130
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 86/160 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G ND + L+D+ + + D+++ VF WN M+ +GS +AL
Sbjct: 197 IKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEAL 256
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G RP TF +I A + GK++H ++A F+ ++F+ S+L+D+Y
Sbjct: 257 GIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMY 316
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG+VD R++F+ ++ +VSWT MI G A G A
Sbjct: 317 CKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEA 356
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ +WN +I +AL + M +GF PD FT V+
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 185
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
I++G VHG A+K GF D+FV S+L+D+Y C +D K+FD V W +M++G
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245
Query: 155 LAASGDLDAA 164
A +G ++ A
Sbjct: 246 YAQNGSVEEA 255
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR +++ + L+D+ G D A VF+ I+ P + +W MI + G + +A
Sbjct: 297 LIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEA 356
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
+L+ M +P+ TF V+ AC + ++ G K + ++ + GF + + L D
Sbjct: 357 FVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALAD 416
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMI 152
+ GD+D +M+++ S W+T++
Sbjct: 417 TLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 447
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 25/147 (17%)
Query: 34 LVFSQIRCPHVF-TWNLMIRALTIDGSSLQALLLYNLMICNGFRPD---KFTFPFVIKAC 89
+ + + PH +W IR G L A+ L+ L + P + P +K+C
Sbjct: 1 MSLAAVASPHFPPSWAYQIRMAASQGQFLHAISLF-LQMRASVAPRSSVPASLPAALKSC 59
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV-----------DGG----- 133
+H LA+++G D F + L++L +K +GG
Sbjct: 60 AGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAA 119
Query: 134 ----RKMFDKMRVRSVVSWTTMISGLA 156
RK+FD+M R VSW T+I G A
Sbjct: 120 YESMRKVFDEMLERDAVSWNTLILGCA 146
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 30 DHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
DHA VF+ + H F WN ++R L S ++LL ++ M PD +TFP V+
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVR-LHAAASPRRSLLYFSRMRRVAVAPDAYTFPAVL 123
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
KAC + G VHG AV+ G D+F ++ L+ Y + GD GRK+FD VR +V
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLV 182
Query: 147 SWTTMISGLAASGDLDAA 164
SW +M++G G++D A
Sbjct: 183 SWNSMVAGYVGCGEVDLA 200
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
++D + +G+ D A ++F ++ +V +W+++I G +AL + M+ G +PD
Sbjct: 250 MIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPD 309
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + AC A+E+G+ +H K D+ VQ+ L+D+Y+KCG +D + +F+
Sbjct: 310 RVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFE 369
Query: 139 KMRVRSVVSWTTMISGLAASG-DLDA 163
M +SVV+W MI GL G LDA
Sbjct: 370 SMPKKSVVTWNVMIVGLGTHGYGLDA 395
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D ++ L+D+ G+ D A L+F + V TWN+MI L G L A+ L+N M
Sbjct: 344 DVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQME 403
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
D + V+ +C + + +G + + + G + L+DL + G V
Sbjct: 404 TERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRV 463
Query: 131 DGGRKMFDKMRVRSVVS-WTTMIS 153
D R + M + W ++++
Sbjct: 464 DQARNTIETMPMEPTPELWGSLLA 487
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ ++++D Y + G +D R +F++M R+V+SW+ +I G G+ + A
Sbjct: 242 RDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEA 294
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
++ DL Y H LL P F WN +IR+ T S AL +Y M+ G P
Sbjct: 39 RIRDLNQIYA---HILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLP 95
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D++T P V+KA S AI+ G++VH +K G + + +S ++LY K GD D K+F
Sbjct: 96 DRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVF 155
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D+ + SW +ISGL+ G
Sbjct: 156 DENHEPKLGSWNALISGLSQGG 177
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL +++ ++L G D A VF + P + +WN +I L+ G ++ A+
Sbjct: 124 IKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAI 183
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR--DMFVQSTLMD 122
+++ M +GF PD T V+ AC + + ++H +A + + + ++L+D
Sbjct: 184 VVFVDMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLID 243
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D ++F M R+V SWT+MI G A G A
Sbjct: 244 MYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEA 285
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
L+ L+D+ G+ D A VF+ + +V +W MI + G + +AL ++ M +
Sbjct: 236 LMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRES 295
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDG 132
G +P+ TF V+ AC+ +++G+ + G + + ++DL + G D
Sbjct: 296 GVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDD 355
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
R+M ++M ++ + V W ++ G++D A
Sbjct: 356 ARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMA 388
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + +L+ L+D+ + G D AL VF + V +W ++ T +GS +A
Sbjct: 355 IVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEA 414
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G PDK V+ A +E G++VHG +K+GF + V ++L+ +
Sbjct: 415 LKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTM 474
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ +F+ M +R +++WT +I G A +G L+ A
Sbjct: 475 YTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDA 515
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQA 63
I+ G D +V LL + + + A +F + + TW M+ + +G + +A
Sbjct: 152 IKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKA 211
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + + G + +++TFP V+ AC + A G +VH VK+GF +++VQS L+D+
Sbjct: 212 IECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDM 271
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC +++ R + + M V VVSW +MI G G
Sbjct: 272 YAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQG 307
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+ +WN +I GS ++A L+ M +G +P+++T V++ C + + + +G+++H
Sbjct: 89 NTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIH 148
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASG 159
G +K GF D+ V + L+ +Y +C + +F+ M ++ V+WT+M++G + +G
Sbjct: 149 GHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNG 206
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + + L+D+ + + + A + + V +WN MI G +A
Sbjct: 253 IVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEA 312
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKA-CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L ++ M + D FT P ++ ++ ++ H L VK G++ V + L+D
Sbjct: 313 LSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVD 372
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G +D K+F+ M + V+SWT +++G +G D A
Sbjct: 373 MYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEA 414
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 2/149 (1%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+N+ L KL++ C + F QI+ P + +N I+A + +A+ LY+
Sbjct: 32 NNNHYL--KLINSCKYINPLLQIHTHFLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHT 89
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
++ G +PDKFTF FV+KAC ++L +G ++ V G D+++ ++L+D++ K G
Sbjct: 90 ILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGC 149
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+D R +FDKM V+ V W MISGL+ S
Sbjct: 150 LDNARNVFDKMPVKDGVCWNAMISGLSQS 178
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ GL D + L+D+ G D+A VF ++ WN MI L+ +
Sbjct: 123 KDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPC 182
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL ++ M GF DK + + A + K +HG V+ V ++L+
Sbjct: 183 EALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICG--VVSNSLI 240
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y KCGDV +++FD+M VR VSW TM++G +G
Sbjct: 241 DMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNG 278
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ + +D +V L+ + + +A+ +F++++ + WN +I T G AL
Sbjct: 427 IKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLAL 486
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++N + +G PD T + AC ++ G +HG K+GF D+ V+ LMD+Y
Sbjct: 487 EMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMY 546
Query: 125 LKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
KCG + ++F + V+ VSW MI+G +G + A
Sbjct: 547 AKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEA 587
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 77/156 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL +D ++ ++ + + G+ A +F + + W+ + AL G + L
Sbjct: 326 LQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVL 385
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ +M G +PDK ++ C I GK +H A+KA D+ + +TL+ +Y
Sbjct: 386 SIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMY 445
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++ +F++M+++ +V W T+I+G GD
Sbjct: 446 IRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGD 481
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN+MI +G S +A+ + M RP+ TF ++ A + + H
Sbjct: 570 SWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCI 629
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ GF + ++L+D+Y KCG + K F +M + +SW M+S A G + A
Sbjct: 630 IRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELA 688
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G A VF ++ +W M+ +G + L L + M + +
Sbjct: 239 LIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMN 298
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K + +EKGKE++ A++ G D+ V + ++ +Y KCG++ R++F
Sbjct: 299 KVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFL 358
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+ R +V+W+ +S L +G
Sbjct: 359 SLEGRDLVAWSAFLSALVETG 379
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G + L+ L+D+ + G+ ++ F ++ +WN M+ A + G A
Sbjct: 629 IIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELA 688
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ L+++M + R D ++ V+ AC S I++G ++
Sbjct: 689 VALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDI 726
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL-LL 66
G + D +L+ +L+ L + G + F I+ ++F+WN M+ A G ++ +
Sbjct: 78 GKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCV 137
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
L+ +G RPD +TFP V+KAC L++ G+++H +K GF D++V ++L+ LY +
Sbjct: 138 TELLSLSGVRPDFYTFPPVLKAC---LSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSR 194
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G V+ K+F M VR V SW MISG +G++ A
Sbjct: 195 FGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEA 232
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I++GL +D + L+++ S +G+ A VF + + +WN +I A + + A
Sbjct: 274 VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA 333
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGF-SRDMFVQSTLM 121
L + M+ G RPD T + + L+ + G+ VHG V+ + D+ + + L+
Sbjct: 334 LGFFKEMLFVGMRPDLLTV-VSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALV 392
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++Y K G +D R +F+++ R V+SW T+I+G A +G
Sbjct: 393 NMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNG 430
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +D + L+ L S +G + A VF + V +WN MI +G+ +A
Sbjct: 173 VLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEA 232
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + + M + D T ++ C S + G VH +K G D+FV + L+++
Sbjct: 233 LRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINM 292
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y K G + +++FD M VR +VSW ++I+ + D
Sbjct: 293 YSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDD 329
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L D ++ L+++ + G D A VF Q+ V +WN +I +G + +A+ YN
Sbjct: 381 LEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYN 440
Query: 69 LMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+M P++ T+ ++ A A+++G ++HG +K D+FV + L+D+Y KC
Sbjct: 441 MMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKC 500
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
G ++ +F ++ + V W +IS L G + A
Sbjct: 501 GRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKA 537
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ L D + L+D+ G+ + A+ +F +I WN +I +L I G +
Sbjct: 477 RLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEK 536
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLM 121
AL L+ M +G + D TF ++ AC S +++ + K ++ ++
Sbjct: 537 ALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMV 596
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
DL+ + G ++ + M +++ S W T+++ G+ +
Sbjct: 597 DLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAE 638
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
F V ++C I K++H L + G ++D+ + + L+ LY GD+ F ++
Sbjct: 54 FNLVFRSCTN---INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110
Query: 142 VRSVVSWTTMISGLAASG 159
+++ SW +M+S G
Sbjct: 111 RKNIFSWNSMVSAYVRRG 128
>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 454
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%)
Query: 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+VF+WN +I L G S+++L + M +P++ TFP IKAC + L + GK+
Sbjct: 45 TNVFSWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFPCAIKACSSLLDLHWGKQT 104
Query: 102 HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
H A+ GF D+FV S L+D+Y KCG + R +FD++ R++V WT+MI+G
Sbjct: 105 HQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRNIVIWTSMITG 157
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D + LLD + G+ + VF +I +WN MI +G S +A
Sbjct: 218 VVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDAISWNSMIAVYAQNGLSSEA 277
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+++ MI G+ + + T ++ AC S A++ GK +H ++ G ++ V ++L+D
Sbjct: 278 FEVFHGMIKYGYVKYNAVTLSTLLLACAHSGALQTGKCIHDQVIRMGLDDNVIVGTSLID 337
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V RK FD M+ ++V SWT M++G G
Sbjct: 338 MYCKCGRVQMARKTFDGMKEKNVKSWTAMVAGYGMHG 374
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q+ + +G +D + L+D+ S G+ A ++F +I ++ W MI + +
Sbjct: 106 QQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRNIVIWTSMITGYIQNDHAH 165
Query: 62 QALLLY-NLMICNGFRP--------DKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGF 110
+ALLL+ +I R D V+ AC I+ + KG VHG VK G
Sbjct: 166 EALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISGKGMTKG--VHGFVVKKGL 223
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+ +++TL+D Y KCG+V R++FD++ + +SW +MI+ A +G
Sbjct: 224 DEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDAISWNSMIAVYAQNG 272
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++IR GL ++ ++ L+D+ G+ A F ++ +V +W M+ + G + +
Sbjct: 319 QVIRMGLDDNVIVGTSLIDMYCKCGRVQMARKTFDGMKEKNVKSWTAMVAGYGMHGCARE 378
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
AL ++ MI +G +P+ TF V+ AC + +++G
Sbjct: 379 ALNIFYKMIRSGVKPNYITFVSVLAACSHAGLLDEG 414
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 80/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL + L KL+ L YG D A VF I + M++ +A
Sbjct: 60 IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M + P + F +++K C + GKE+HGL VK+GFS D+F + L ++
Sbjct: 120 LKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC V RK+FD+M R +VSW T+++G + +G
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNG 215
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
+V L+ + + D A +F +++ + +WN MI +G ++AL ++ M
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQART 433
Query: 75 FRPDKFTFPFVIKACIASLAI-EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+PD FT+ VI A IA L+I K +HG+ ++ +++FV + L+D+Y KCG +
Sbjct: 434 VKPDTFTYVSVITA-IAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
R +FD M R V +W MI G G AA
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGIGKAA 523
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G S D + L ++ + + A VF ++ + +WN ++ + +G + A
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + NLM +P T V+ A A I GKE+HG A++AGF + + + L+D+
Sbjct: 221 LEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDM 280
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R +FD M R+VVSW +MI + + A
Sbjct: 281 YAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEA 321
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 84/155 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G + + L+D+ + G A L+F + +V +WN MI A + + +A+
Sbjct: 263 MRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+++ M+ G +P + + AC +E+G+ +H L+V+ R++ V ++L+ +Y
Sbjct: 323 VIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMY 382
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KC +VD MF K++ R++VSW MI G A +G
Sbjct: 383 CKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNG 417
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R L + + L+D+ + G A L+F + HV TWN MI G A
Sbjct: 464 VMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAA 523
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M RP+ TF VI AC S +E G K H + M ++D
Sbjct: 524 LELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVD 583
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS 147
L + G ++ +M V+ V+
Sbjct: 584 LLGRAGRLNEAWDFIMQMPVKPAVN 608
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
++++ + + L K G ++ Q+ L+ L+ + G VD ++F+ + + V + TM+
Sbjct: 49 SLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLK 108
Query: 154 GLAASGDLDAA 164
G A DLD A
Sbjct: 109 GFAKVSDLDKA 119
>gi|48716412|dbj|BAD23021.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|50251414|dbj|BAD28452.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 727
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
LL L + G A ++F ++ V +W MI A G + QAL L+ M+ +G +P
Sbjct: 169 LLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGYADQALRLFREMLADGALQP 228
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D V++AC + G VH +A + G D+FV ++L+D+Y KC D+ RK+F
Sbjct: 229 DGVVAVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDMYAKCLDLRSARKVF 288
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D + V++VVSW TM+SGL +G A
Sbjct: 289 DLIAVKNVVSWNTMLSGLVHAGSYPEA 315
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 77/145 (53%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L+ LLD G + L +F +R +V TW+ +I A + A+ + M+ G
Sbjct: 366 LLNALLDAYGKCGLVEDVLRLFQGMRERNVITWSTVIAACAHNARPHAAMACFVAMLVTG 425
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
RP+ T +++AC + + + HG+AV++G ++ V + L+ +Y KCG++
Sbjct: 426 ERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGKCGELGASA 485
Query: 135 KMFDKMRVRSVVSWTTMISGLAASG 159
++FD M V+ V++W +MI L +G
Sbjct: 486 RVFDTMPVKDVLTWNSMIGALGMNG 510
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL D + L+D+ + A VF I +V +WN M+ L GS +AL
Sbjct: 258 RRGLQGDLFVDNSLVDMYAKCLDLRSARKVFDLIAVKNVVSWNTMLSGLVHAGSYPEALH 317
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L L I G D+ T +++ C L + + VHG A++ M + + L+D Y
Sbjct: 318 LLALQI--GVVGDETTLAVLLQLCKKKRLGGQAARSVHGAAIRRRL-LSMALLNALLDAY 374
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG V+ ++F MR R+V++W+T+I+ A + AA
Sbjct: 375 GKCGLVEDVLRLFQGMRERNVITWSTVIAACAHNARPHAA 414
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+H +K S V ++L+ LY GD +F +M R V SWT+MI SG
Sbjct: 150 IHAYLLKTPASIHTPVANSLLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGY 209
Query: 161 LDAA 164
D A
Sbjct: 210 ADQA 213
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN M+ T + L L+ LM G R D FT V+K C AI +GK+VH A
Sbjct: 491 AWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYA 550
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K+G+ D++V S ++D+Y+KCGD+ + FD + V V+WTT+ISG +G+ + A
Sbjct: 551 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERA 609
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G D + +LD+ G A F I P W +I +G +AL
Sbjct: 551 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERAL 610
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+++ M G PD+FT + KA A+E+G+++H A+K + D FV ++L+D+Y
Sbjct: 611 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMY 670
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG +D +F ++ + ++ +W M+ GLA G+
Sbjct: 671 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 706
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL- 61
+I+ + ++ LV L+ + S G +A VF ++ + +WN ++ A +
Sbjct: 71 RILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVV 130
Query: 62 ----QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+A LL+ ++ + + T ++K C+ S + + HG A K G D FV
Sbjct: 131 ENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVA 190
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++YLK G V GR +F++M R VV W M+ G
Sbjct: 191 GALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMG 232
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ ++D + L+D+ + G D A +F +I ++ WN M+ L G +AL
Sbjct: 652 LKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEAL 711
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G +PDK TF V+ AC S L E K + + G ++ S L D
Sbjct: 712 QLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADA 771
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G V + D M + + S + T+++ GD +
Sbjct: 772 LGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTE 811
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF+ + + +WN +I + ++A+ L+ ++ G +PD +T V+KA +
Sbjct: 376 ARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASS 435
Query: 92 -SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY-----LKCGDVDGGRKMFDKMRVRSV 145
+ K++H A+K D FV + L+D Y +K +V GR FD +
Sbjct: 436 LPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNFD------L 489
Query: 146 VSWTTMISGLAASGD 160
V+W M+SG S D
Sbjct: 490 VAWNAMMSGYTQSHD 504
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ + D+ TF V+ + ++ G++VH +A+K G + V ++L+++Y K
Sbjct: 313 MVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK 372
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
+ R +F+ M R ++SW ++I+G+A S
Sbjct: 373 IGLARTVFNNMSERDLISWNSVIAGIAQS 401
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
GK H + + + F+ + L+ +Y KCG + R++FDKM R +VSW ++++ A
Sbjct: 65 GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124
Query: 158 SGD 160
S +
Sbjct: 125 SSE 127
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL D + L+++ +GK ++F ++ V WNLM++A G +A+
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 239
Query: 66 LYNLMICNGFRPDKFTF 82
L + +G P++ T
Sbjct: 240 LSSAFHTSGLHPNEITL 256
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 26 YGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
YGK + A+ VF + P +WN ++ A DG QA ++ M G PD+ TF
Sbjct: 47 YGKCGCVEDAVTVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITF 106
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+ C A+ + +GK +HG ++AG R++ V ++L+ +Y KCG V+ R++FDK+ +
Sbjct: 107 VTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLAL 166
Query: 143 RSVVSWTTMI 152
+ VVSWT+MI
Sbjct: 167 QDVVSWTSMI 176
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ G +D ++ ++++ G + A VF ++ P+ +WN ++ A T G ++
Sbjct: 229 QVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVE 288
Query: 63 ALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL + M + G PDK TF ++ AC + + G+ ++ ++ G+ + V + +M
Sbjct: 289 ALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCIM 348
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CG +D F M R +SW T+ISG A +G D A
Sbjct: 349 TMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEA 391
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 78/156 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ GL + ++ L+ + G + A VF ++ V +W MI ++A
Sbjct: 129 VLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEA 188
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L++ M +G P++ T+ I AC ++ GK +H ++ GF D+ V ++++
Sbjct: 189 LELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNM 248
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ R++F++M + VSW +++ G
Sbjct: 249 YGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHG 284
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G ++ ++ + S G+ D+A FS + +WN +I G +A
Sbjct: 332 ILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEA 391
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G PDKFTF +I + +++ K + L V++G D+F+ S L+++
Sbjct: 392 VHLFRRMLAEGITPDKFTFISIIDG---TARMQEAKILSELMVESGVELDVFLVSALINM 448
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ + G+V R +FD M+ R +V WT++IS G D A
Sbjct: 449 HSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDA 489
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G+ +D ++ LL++ + D A +FS++ + +WN MI G S +A
Sbjct: 628 LLETGMESDHIVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREA 687
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIAS--LAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+ ++ M G PDK +F V+ A S ++++ + V L G+ D V + ++
Sbjct: 688 IQMFQRMQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIV 747
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ + G + R+ F+++R R SW +++ A G+++ A
Sbjct: 748 SMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQA 790
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I G + + L+++ + G + A LVF Q ++ +WN + A +AL
Sbjct: 532 IERGFAASPAVGNALINMYAKCGCLEEADLVFHQCG-KNLVSWNTIAAAYVQRDKWREAL 590
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G + DK +F V+ C ++ +G ++H + ++ G D V + L+++Y
Sbjct: 591 QLFQEMQLEGLKADKVSFVTVLNGCSSA---SEGSKIHNILLETGMESDHIVSTALLNMY 647
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D ++F +M R +VSW MI+G A G
Sbjct: 648 TASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHG 682
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G+ D LV L+++ S YG A +F ++ + W +I + GSS A
Sbjct: 430 MVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDA 489
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LM G + FT + AC + A+ +GK +H A++ GF+ V + L+++
Sbjct: 490 LGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINM 549
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
Y KCG ++ +F + +++VSW T+ +
Sbjct: 550 YAKCGCLEEADLVFHQCG-KNLVSWNTIAAA 579
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D ++ ++ + G+ A F +IR +WN+++ A G QAL L+
Sbjct: 735 GYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQALKLF 794
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M RPD T V+ AC IE+G + + G + ++DL +
Sbjct: 795 RRMQQESSRPDSITLVSVLSACSHGGLIEEGYYHFTSMGREFGIAGSQEHYGCVVDLLAR 854
Query: 127 CGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGD 160
G +D ++ KM V S V W T++S GD
Sbjct: 855 AGRLDQAEELLRKMPVPASYVLWMTLLSACKVQGD 889
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D+ TF ++ C AI +G+ VH + F RD VQ+ + +Y KCG V+ +F
Sbjct: 1 DRGTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVF 60
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
+ S VSW ++++ A G
Sbjct: 61 QSLDHPSQVSWNSLLAAFARDG 82
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G + A VF ++ +V TW LMI G S A+ L+ M+ +G+ PD+FT V+
Sbjct: 93 GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC---GDVDGGRKMFDKMRVR 143
AC + G++ H L +K+G D+ V +L+D+Y KC G VD RK+FD+M V
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212
Query: 144 SVVSWTTMISGLAASGDLD 162
+V+SWT +I+G SG D
Sbjct: 213 NVMSWTAIITGYVQSGGCD 231
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 87/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ L++ + L+ + S G ++A F + ++ ++N ++ A +S +A
Sbjct: 276 VVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEA 335
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+N + G + FTF ++ + AI KG+++H +K+GF ++ + + L+ +
Sbjct: 336 FELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISM 395
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG+++ ++F++M +V+SWT+MI+G A G
Sbjct: 396 YSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHG 431
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS- 59
+++ GL D + L+D+ C G D A VF ++ +V +W +I G
Sbjct: 171 VMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGC 230
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+A+ L+ M+ +P+ FTF V+KAC I G++V+ L VK + V ++
Sbjct: 231 DREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNS 290
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y +CG+++ RK FD + +++VS+ T+++ A S + + A
Sbjct: 291 LISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEA 335
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+W+ +I + + +A+ + M+ GF P+++ F V +AC I GK + G
Sbjct: 9 SWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFL 68
Query: 106 VKAG-FSRDMFVQSTLMDLYLK-CGDVDGGRKMFDKMRVRSVVSWTTMIS 153
+K G F D+ V L+D+++K GD++ K+FD+M R+VV+WT MI+
Sbjct: 69 LKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMIT 118
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G ++ + L+ + S G + A VF+++ +V +W MI G + +
Sbjct: 376 RILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATR 435
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
AL ++ M+ G P++ T+ V+ AC I +G K + V+ G M + ++
Sbjct: 436 ALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVV 495
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
DL + G ++ ++ + M ++ + T + G++D
Sbjct: 496 DLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMD 537
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++I+ + LLD G T A+ VF I + W+ M+ G + +
Sbjct: 418 EVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEE 477
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIA-SLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L++ +I G +P++FTF VI AC + + A E+GK+ H A+K + + V S L+
Sbjct: 478 AAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALV 537
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G++D ++F + + R +VSW +MISG + G A
Sbjct: 538 TMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKA 580
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++++G + L+ L S G A VF ++ TWN MI +G L+
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++N M G +P TF VIK+C + + K + A+K+GF+ D V + LM
Sbjct: 280 FEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVA 339
Query: 124 YLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
KC ++D +F M ++VVSWT MISG +G D A
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQA 381
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSL 61
K ++ G + DQ+++ L+ S + D AL +FS + +V +W MI +G +
Sbjct: 320 KALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGND 379
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
QA+ L++ M G +P+ FT+ ++ E+H +K + R V + L+
Sbjct: 380 QAVNLFSQMRREGVKPNHFTYSAILTVHYPVFV----SEMHAEVIKTNYERSSSVGTALL 435
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D Y+K G+ K+F+ + + +++W+ M++G A +G+ + A
Sbjct: 436 DAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEA 478
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 40 RCPHVFT----WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95
+ PH T N ++ + + D + +AL L+ ++ + +PD+ T V C SL
Sbjct: 50 KIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDG 109
Query: 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+ G++VH VK G + V ++L+D+Y+K +V+ GR++FD+M R+VVSWT++++G
Sbjct: 110 KLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGY 169
Query: 156 AASG 159
+ +G
Sbjct: 170 SWNG 173
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 1/159 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+++GL + + L+D+ + VF ++ +V +W ++ + +G
Sbjct: 120 VKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVW 179
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G P+++T VI A + + G +VH + VK GF + V ++L+ LY
Sbjct: 180 ELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLY 239
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG-DLD 162
+ G + R +FDKM +R V+W +MI+G +G DL+
Sbjct: 240 SRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLE 278
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ L+N + L+ + + G D A VF + + + +WN MI + G + +AL
Sbjct: 522 IKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKAL 581
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDL 123
+++ M D TF VI AC + +EKG K + + + M S ++DL
Sbjct: 582 EVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDL 641
Query: 124 YLKCGDVDGGRKMFDKM 140
Y + G ++ + ++M
Sbjct: 642 YSRAGMLEKAMGIINEM 658
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D AL F + TW+ MI G S +AL L++ M +G RP +FTF VI
Sbjct: 258 GSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVI 317
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A +GK+VH +K GF ++V + L+D+Y KC + RK FD ++ +V
Sbjct: 318 NACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIV 377
Query: 147 SWTTMISGLAASGDLDAA 164
WT+MI G +G+ + A
Sbjct: 378 LWTSMIGGYVQNGENEDA 395
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + ++ L+D+ + A F ++ P + W MI +G + A
Sbjct: 336 LLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDA 395
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G P++ T V+KAC + A+E+GK++H VK GF ++ + S L +
Sbjct: 396 LSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTM 455
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + G +F +M R V+SW MISGL+ +G
Sbjct: 456 YAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNG 491
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS--LQALLLYNLMIC 72
+ L++L + + A VF +I+ V +WN +I + G S + L+ M
Sbjct: 42 IANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRA 101
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
P+ TF V A + G+ H +A+K RD+FV S+LM++Y K G
Sbjct: 102 ENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPE 161
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAA 157
RK+FD M R+ VSW TMISG A+
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYAS 186
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+++ G T A VF + + +W MI + +AL L+ LM
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMR 201
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
++F F V+ A + GK++H +AVK G + V + L+ +Y KCG +D
Sbjct: 202 REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ F+ ++ ++W+ MI+G A SGD D A
Sbjct: 262 DALQTFETSSDKNSITWSAMITGYAQSGDSDKA 294
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++YG + + L + + G LVF ++ V +WN MI L+ +G +
Sbjct: 436 RTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKE 495
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
AL L+ M G +PD TF ++ AC +E+G
Sbjct: 496 ALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG 531
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P +F + + +++KGK +H +K+ S +++ ++L++LY KC + + +
Sbjct: 4 PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFV 62
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
F++++ + VVSW +I+G + G
Sbjct: 63 FERIQNKDVVSWNCIINGYSQHG 85
>gi|302785437|ref|XP_002974490.1| hypothetical protein SELMODRAFT_101245 [Selaginella moellendorffii]
gi|300158088|gb|EFJ24712.1| hypothetical protein SELMODRAFT_101245 [Selaginella moellendorffii]
Length = 381
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-L 69
D ++ LL + + G + A VF + +V TWN +++A + G +AL+L+ L
Sbjct: 75 TDVVVCNTLLSMYAKSGTSADARAVFESMSRRNVITWNGIMKAYALQGEFGEALVLFQRL 134
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+PD+ TF I C +E+G+ +H V +G D+ + +TL+++Y KCG
Sbjct: 135 EAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLVNMYGKCGQ 194
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V R +FDKM VR VV+W+++++ A++G
Sbjct: 195 VGTARGLFDKMIVRDVVTWSSLLATYASNG 224
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M G D +F + AC + A+E GK +H ++ SR + V + L + Y +CG
Sbjct: 1 MDIEGVEADCVSFSSALDACAHAKALEFGKAIHD-SLGCSDSRAVCVNNALTNFYGRCGR 59
Query: 130 VDGGRKMFDKMRVR--SVVSWTTMISGLAASG 159
+ R +FD+M +R VV T++S A SG
Sbjct: 60 PEDARIIFDQMPMRDTDVVVCNTLLSMYAKSG 91
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I L + + L D+ + G A VFS ++ V +WN MI T + +A
Sbjct: 480 IRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEA 539
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +PD T ++ AC + A++KG+E+HG A++ G+S D +V + ++D+
Sbjct: 540 LTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDM 598
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KCG + R +FD + + +VSWT MI+G G
Sbjct: 599 YVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHG 634
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D +L KL+ + G +VF ++ +F WNLMI + G+ +++ L+
Sbjct: 180 GVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLF 239
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
M+ G +P+ +TF ++K C A++A +E+G++VHGL K GF+ V ++L+ Y
Sbjct: 240 KQMLELGIKPNSYTFSSILK-CFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFV 298
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
V +K+FD++ R V+SW +MISG +G
Sbjct: 299 GRKVRCAQKLFDELTDRDVISWNSMISGYVKNG 331
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ S G + A+ VF ++ V +W MI +G S A+ L++ M G PD
Sbjct: 394 LLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPD 453
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ ++ AC + ++ GK VH + + FV + L D+Y KCG + +F
Sbjct: 454 VYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFS 513
Query: 139 KMRVRSVVSWTTMISG 154
M+ + V+SW TMI G
Sbjct: 514 HMKKKDVISWNTMIGG 529
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G ++ +V L+ K A +F ++ V +WN MI +G +
Sbjct: 277 ICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRG 336
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
+ ++ M+ G D T V AC + GK +H ++KA R++ +TL+D
Sbjct: 337 IEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLD 396
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCGD++ ++F++M ++VVSWT+MI+G G D A
Sbjct: 397 MYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGA 438
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++ C +I G+ V + +G D + L+ +Y+KCGD+ GR +FDK+
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESK 215
Query: 145 VVSWTTMISGLAASGD 160
+ W MIS + SG+
Sbjct: 216 IFLWNLMISEYSGSGN 231
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G S D+ + ++D+ G A +F I + +W +MI + G +A+
Sbjct: 581 LRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAI 640
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDL 123
+N M G PD+ +F ++ AC S +++G ++ + K ++ + ++DL
Sbjct: 641 NTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDL 700
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G++ K M ++ + W ++ G D+ A
Sbjct: 701 LARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLA 742
>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 764
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-LMICNGFRP 77
LLD+ G A VF +I P++ +WN +I + +G QA+L+Y L+ + RP
Sbjct: 256 LLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENGFGEQAILMYRRLLRISTPRP 315
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D++TF I A GK +HG K G+ R +FV +TL+ +Y K G+ + +K+F
Sbjct: 316 DEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNGEAESAQKVF 375
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R VV WT MI G + G+ + A
Sbjct: 376 GVITERDVVLWTEMIVGESRVGNSECA 402
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G S++ ++ +L + S G + A +F + WN MI + +
Sbjct: 137 QIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRNDKIED 196
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKAC--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L+L+ M+ +G P +FT+ V+ AC + S GK +H + + D+ V++ L
Sbjct: 197 GLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDILADLPVENAL 256
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D+Y CGD+ +F K+ ++VSW ++ISG + +G
Sbjct: 257 LDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENG 295
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 21 DLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALT--IDGSSLQALLLYNLMICNGF 75
+L S Y G + A +F ++ +V ++N + A + +D +S A L N M
Sbjct: 50 NLISMYVRCGSLEQARKLFDKMPERNVVSYNALYSAYSRNLDYASY-AFSLINQMASESL 108
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+P+ TF +++ C + G +H +K G+S ++ VQ++++ +Y CGD++ R+
Sbjct: 109 KPNSSTFTSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARR 168
Query: 136 MFDKMRVRSVVSWTTMISGL 155
+F+ + V+W TMI G+
Sbjct: 169 IFECVNGGDAVAWNTMIVGI 188
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + G + LL + G+ + A VF I V W MI + G+S
Sbjct: 342 QVTKLGYERSVFVGTTLLSMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSEC 401
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M R D F+ V+ AC + +G+ H LA+K GF M V L+D
Sbjct: 402 AVQLFIEMYREKNRTDGFSLSSVLGACSDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVD 461
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G + +F + + W +M+ + G ++ A
Sbjct: 462 MYGKNGKYETAESIFSLVSNPDLKCWNSMLGAYSQHGMVEKA 503
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGF---SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ + C++ A+++ ++H + + AG S + + L+ +Y++CG ++ RK+FDKM
Sbjct: 13 LTRKCVSITALKRACQLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMP 72
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
R+VVS+ + S A S +LD A
Sbjct: 73 ERNVVSYNALYS--AYSRNLDYA 93
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G N + L+D+ GK + A +FS + P + WN M+ A + G +A
Sbjct: 445 IKTGFDNVMSVSGALVDMYGKNGKYETAESIFSLVSNPDLKCWNSMLGAYSQHGMVEKAQ 504
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK----EVHGLAVKAGF 110
+ ++ NGF PD T+ ++ AC + ++GK ++ + AGF
Sbjct: 505 SFFEQILENGFTPDAVTYLSLLAACSHKGSTQEGKFLWNQMKEQGITAGF 554
>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL++ + L+ S +G+ + A VF+ + P++ +WN +I +G +LQ
Sbjct: 408 VSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQG 467
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + ++ + +P+ +T V+ C + A+ GK++HG +++G + + L+ +
Sbjct: 468 LEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITM 527
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCGD+D ++F+ M R +VSW MIS A G
Sbjct: 528 YAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHG 563
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LL C+ G+ +A +F+Q WN +I + + AL L+ M G R D
Sbjct: 125 LLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHD 184
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K+TF V+ C L ++ G+EVH L +K GF V + L+ +Y G V ++F+
Sbjct: 185 KYTFASVLSLCSLEL-LDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFE 243
Query: 139 KMR--VRSVVSWTTMISGLAASGDLDAA 164
+ V +++ MI GLA+ G + A
Sbjct: 244 EAESTVHDDITFNVMIGGLASVGRDEEA 271
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSL 61
+I+ G ++ LL + GK A VF + T+N+MI L G
Sbjct: 210 VIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDE 269
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL+++ M RP + TF V+ +C ++ +VH A+K GF V + M
Sbjct: 270 EALIMFKEMQEACLRPTELTFVSVMSSCSSA---RVSHQVHAQAIKMGFEACTPVSNAAM 326
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+Y CG++ +FD++ + ++SW +I A
Sbjct: 327 TMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYA 361
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G+ + L L+ + + G D +L +F+ + + +WN MI A G +A
Sbjct: 509 ILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEA 568
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
+ + M G +PD+ TF V+ AC + ++ G + + + GF S ++
Sbjct: 569 VHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIV 628
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDL 161
DL + G ++ ++ + ++ V S W T+ S AA G+L
Sbjct: 629 DLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNL 669
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 31 HAL-LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
HA+ +VF ++ + +WN++I A+L + M G PD+FT ++ +
Sbjct: 336 HAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLAS- 394
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
S ++E K L K G + + V + L+ + K G ++ ++F+ M +++SW
Sbjct: 395 --SESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWN 452
Query: 150 TMISGLAASG 159
T+ISG +G
Sbjct: 453 TIISGFLFNG 462
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+ +S+Q L + N +PD FT + AC G ++H +++ G V
Sbjct: 33 NSASVQ--LFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHV 90
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+TL+ Y K D+ +++F+++ V SWTT++S G + A
Sbjct: 91 GNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYA 138
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 18 KLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC-NG 74
KLL+LC S +G +AL +F I P WN +IR + A+ Y M NG
Sbjct: 38 KLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNG 97
Query: 75 F-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
R D T F +KAC +LA + ++H ++ GF+ D+ +Q+TL+D Y K GD+D
Sbjct: 98 LHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLA 157
Query: 134 RKMFDKMRVRSVVSWTTMISGLA 156
+K+FD+M + SW +I+G A
Sbjct: 158 QKLFDEMPQPDIASWNALIAGFA 180
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R+G + D LL LLD + G D A +F ++ P + +WN +I
Sbjct: 128 QLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPAD 187
Query: 63 ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A++ + M +G RP+ T + AC A+++G+ VH V+ ++ V + ++
Sbjct: 188 AIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVI 247
Query: 122 DLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGD 160
D+Y KCG +D +F+ MR +S+++W TMI A GD
Sbjct: 248 DMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGD 287
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQ 62
I+ L ++ + ++D+ + G D A VF +RC + TWN MI A + G +
Sbjct: 231 IVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHK 290
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ + +G PD ++ V+ AC + +E G ++ + G ++ +++D
Sbjct: 291 ALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVD 350
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L + G + + + ++V W T++ GD++ A
Sbjct: 351 LLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMA 392
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
++ DL Y H LL P F WN +IR+ T S AL +Y M+ G P
Sbjct: 39 RIRDLNQIYA---HILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLP 95
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D++T P V+KA S AI+ G++VH +K G + + +S ++LY K GD D K+F
Sbjct: 96 DRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVF 155
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
D+ + SW +ISGL+ G
Sbjct: 156 DENHEPKLGSWNALISGLSQGG 177
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ GL +++ ++L G D A VF + P + +WN +I L+ G ++ A+
Sbjct: 124 IKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAI 183
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR--DMFVQSTLMD 122
+++ M +GF PD T V+ AC + + ++H +A + + + ++L+D
Sbjct: 184 VVFVDMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLID 243
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D ++F M R+V SWT+MI G A G A
Sbjct: 244 MYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEA 285
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
L+ L+D+ G+ D A VF+ + +V +W MI + G + +AL ++ M +
Sbjct: 236 LMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRES 295
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDG 132
G +P+ TF V+ AC+ +++G+ + G + + ++DL + G D
Sbjct: 296 GVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDD 355
Query: 133 GRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
R+M ++M ++ + V W ++ G++D A
Sbjct: 356 ARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMA 388
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 96/166 (57%), Gaps = 10/166 (6%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYG--KTDHALLVFSQIRC-PHVFTWNLMIRALTIDGS 59
+++ +GL+ + L+ L+ S+ G A +VF Q P WNLMI+A + S
Sbjct: 77 QVVTHGLAQNTSLLGPLIH--SYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPS 134
Query: 60 SLQALLLYNLMICNGFRP---DKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMF 115
S ++L L++ M+ +G RP DK+TF FV AC + G+ VHG+ VK G+ D+F
Sbjct: 135 SQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIF 193
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
V ++L+++Y + +++FD+M R V++WT+++ G A G+L
Sbjct: 194 VGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEL 239
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 32/188 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL-- 61
+++ G +D + L+++ S + + A VF ++ V TW +++ + G +
Sbjct: 183 VVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRA 242
Query: 62 -----------------------------QALLLYNLMICNG-FRPDKFTFPFVIKACIA 91
+AL +N M+C+ +P++ ++ AC
Sbjct: 243 RELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAH 302
Query: 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151
A+++GK +H K + + L+D+Y KCG +D R++FD + R +++WT+M
Sbjct: 303 LGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSM 362
Query: 152 ISGLAASG 159
ISGL+ G
Sbjct: 363 ISGLSMHG 370
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G+ D A VF + + TW MI L++ G + L ++ M+ GF+PD
Sbjct: 331 LIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPD 390
Query: 79 KFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
T V+ C S +E+G + H + G + L+DL + G ++ +
Sbjct: 391 DITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAI 450
Query: 138 DKMRVRS-VVSWTTMISGLAASGDLD 162
M + VV+W ++S GD+D
Sbjct: 451 KSMPMEPDVVAWRALLSACRIHGDVD 476
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 27 GKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
GK D A+ + ++ VFTW MI L +G QAL ++ M G P+ T
Sbjct: 296 GKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTI 355
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
+ AC I +G EVH +AVK GF D+ V ++L+D+Y KCG ++ RK+FD ++
Sbjct: 356 MSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKN 415
Query: 143 RSVVSWTTMISGLAASG 159
+ V +W +MI+G +G
Sbjct: 416 KDVYTWNSMITGYCQAG 432
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 6 RYGL--SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
R+GL D + KLL + + G A VF +R ++FTW+ MI A + + +
Sbjct: 106 RFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREV 165
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ LM+ +G PD F FP +++ C +E GK +H + +K G S + V ++++ +
Sbjct: 166 AKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAV 225
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG++D K F +MR R V++W +++ +G + A
Sbjct: 226 YAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEA 266
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
TWNL+I +G +AL L+ M + F P+ T ++ AC L + +E+HG
Sbjct: 491 TWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCV 550
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++ V++ L D Y K GD++ R +F M + +++W ++I G G A
Sbjct: 551 LRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPA 609
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
K+ + + K+ L F++ + P++ + L +GS L+A + + G +
Sbjct: 21 KVENSPELHPKSRKKNLSFTKKKEPNIIP-DEQFDYLCRNGSLLEAEKALDSLFQQGSKV 79
Query: 78 DKFTFPFVIKACIASLAIEKGKEVH---GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
+ T+ ++++CI S +I G+ +H GL + D+FV++ L+ +Y KCG + R
Sbjct: 80 KRSTYLKLLESCIDSGSIHLGRILHARFGLFTEP----DVFVETKLLSMYAKCGCIADAR 135
Query: 135 KMFDKMRVRSVVSWTTMISGLA 156
K+FD MR R++ +W+ MI +
Sbjct: 136 KVFDSMRERNLFTWSAMIGAYS 157
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R L + L D + G +++ +F + + TWN +I + GS A
Sbjct: 550 VLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPA 609
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L L+N M G P++ T +I A +++GK+V + +A + S ++
Sbjct: 610 LALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVY 669
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
LY + ++ + +M ++S W + ++G GD+D A
Sbjct: 670 LYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMA 712
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D L+ L+D+ S GK + A VF ++ V+TWN MI G +A
Sbjct: 379 VKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAY 438
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST----- 119
L+ M RP+ T+ +I S I+ G E + + +D VQ
Sbjct: 439 ELFTRMQDANLRPNIITWNTMI-----SGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWN 493
Query: 120 -LMDLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGDLDAA 164
++ Y++ G D ++F KM+ R + + T++S L A +L A
Sbjct: 494 LIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGA 540
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLL 66
G +D + L+ + +G D A VF++ + +WN ++ A + A+ +
Sbjct: 130 GFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQV 189
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M+ +G +P +F F V+ AC S IE G++VH + V+ G+ +D+F + L+D+Y+K
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMK 249
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G VD +F+KM VVSW +ISG +G
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D L+D+ G+ D A ++F ++ V +WN +I ++G +A
Sbjct: 228 VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L M +G P+ FT ++KAC + A + G+++HG +KA D ++ L+D+
Sbjct: 288 IELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDM 347
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K +D RK+FD M R ++ +ISG + G D A
Sbjct: 348 YAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ G D +V L+D CS + VF + + MI AL+
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANR---VFEECSSGDIIACTSMITALSQCDHGE 487
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M+ G PD F ++ AC + A E+GK+VH +K F D F + L+
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALV 547
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ F + R VVSW+ MI GLA G
Sbjct: 548 YTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L SFY K A VF +I P +W+ ++ A + +G A+ ++ M G +
Sbjct: 43 LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F P V+K C+ + G +VH +A+ GF D+FV + L+ +Y G +D R++F+
Sbjct: 103 EFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159
Query: 139 KM-RVRSVVSWTTMISG 154
+ R+ VSW ++S
Sbjct: 160 EADSERNAVSWNGLMSA 176
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ +D + L+D+ + D A VF + + N +I + G +A
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ + G ++ T V+K+ + A ++VH LAVK GF D V + L+D
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDS 448
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y KC + ++F++ +++ T+MI+ L+
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALS 481
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL + + L++L + G+ D A+ VF + + TW +I + G + AL
Sbjct: 165 KLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALE 224
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
L+ M +G RPD+F AC +E G+++HG A + D V + L+DLY
Sbjct: 225 LFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYC 284
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
KC + R++FD M R++VSWTTMI+G
Sbjct: 285 KCSRLLLARRLFDSMENRNLVSWTTMIAG 313
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G S D L+D+ S + D A LVFS ++ + WN MI L + +A
Sbjct: 466 IVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEA 525
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ + +G P++FTF ++ +I G++ H +KAG D + + L+D+
Sbjct: 526 VKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDM 585
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ GR +F+ + V+ W +MIS A G + A
Sbjct: 586 YAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEA 626
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 6/168 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ + GL D L LL S G+ A +F + ++ +W I G
Sbjct: 55 RAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDD 114
Query: 63 ALLLYNLMIC------NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
ALLL+ +G P++F ++AC S A G++VHG+A K G ++FV
Sbjct: 115 ALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFV 174
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L++LY K G +D +FD + R+ V+WT +I+G + +G A
Sbjct: 175 GTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVA 222
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
R +D +V L+DL Y K LL +F + ++ +W MI + +
Sbjct: 266 RTAAESDASVVNALIDL---YCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTE 322
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ ++ + G++PD F ++ +C + AI +G++VH +KA D +V++ L+D
Sbjct: 323 AMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALID 382
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KC + R +F+ + +S+ MI G A GDL A
Sbjct: 383 MYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGA 424
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+ L +D+ + L+D+ Y K +H A VF + ++N MI G
Sbjct: 365 VIKADLESDEYVKNALIDM---YAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDL 421
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A+ ++ M +P TF ++ + +E K++HGL VK+G S D++ S L
Sbjct: 422 TGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSAL 481
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
+D+Y K VD + +F M+ R +V W MI GLA
Sbjct: 482 IDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLA 517
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G +D + L+D+ + G + L+F V WN MI G + +
Sbjct: 566 QIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEE 625
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLM 121
AL ++ +M G P+ TF V+ AC + +++G + + K ++++
Sbjct: 626 ALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVV 685
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+L+ + G + ++ ++M + V + W +++S G+++
Sbjct: 686 NLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGNVE 727
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
H AV +G D+F+ + L+ Y K G + R++FD M R++VSW + IS A G
Sbjct: 52 AHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGR 111
Query: 161 LDAA 164
D A
Sbjct: 112 EDDA 115
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+ II+ G +++L KL+ L YG A VF I ++ M++ + S
Sbjct: 64 IPSIIKNGFYSEELFQTKLISLFCNYGSLTEAARVFEPIENKLEALYHTMLKGFAKNSSL 123
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
ALL + M + RP + F +++ C + + +GKE+HG + +GFS ++F + +
Sbjct: 124 DSALLFFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSGFSWNLFAMTAV 183
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ LY KC + KMFD+M R +V W T+ISG A +G
Sbjct: 184 VSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISGYAQNG 222
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+IR G LV L Y K D A ++F + V TWN MI +G
Sbjct: 269 VIRAGF---DWLVNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDP 325
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A +L+ M+ G +P T V+ AC S +E+GK VH L ++ V ++L
Sbjct: 326 EEAKVLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSL 385
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y KC VD +F+ ++ R++VSW MI G A +G L+ A
Sbjct: 386 ISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQNGRLNEA 429
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L ++ ++ L+ + S + D A +F ++ + +WN MI +G +AL +
Sbjct: 375 LDSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFC 434
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PD FT VI A +A L+I + K +HGL ++ +FV + L+D+Y KC
Sbjct: 435 EMQSQNIKPDSFTMVSVIPA-LAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKC 493
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + RK+F+ M R V++W +MI G
Sbjct: 494 GAIHTARKLFNMMSERHVITWNSMIDAYGTHG 525
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN +I +G + AL L + G RPD T V+ A ++ GK +H +
Sbjct: 211 WNTIISGYAQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVI 270
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+AGF + + + L+D+Y KC + R +FD M R+VV+W +MI+G +GD + A
Sbjct: 271 RAGFDWLVNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEA 328
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR L + ++ L+D+ + G A +F+ + HV TWN MI A G +A
Sbjct: 471 VIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDAYGTHGLGKEA 530
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIAS 92
+ L+ M +P+ TF V+ AC S
Sbjct: 531 VQLFVEMQKGTIKPNDVTFLCVLSACSHS 559
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLL 66
G +D + L+ + +G D A VF++ + +WN ++ A + A+ +
Sbjct: 130 GFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQV 189
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M+ +G +P +F F V+ AC S IE G++VH + V+ G+ +D+F + L+D+Y+K
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMK 249
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G VD +F+KM VVSW +ISG +G
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G D L+D+ G+ D A ++F ++ V +WN +I ++G +A
Sbjct: 228 VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L M +G P+ FT ++KAC + A + G+++HG +KA D ++ L+D+
Sbjct: 288 IELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDM 347
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K +D RK+FD M R ++ +ISG + G D A
Sbjct: 348 YAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 5 IRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ G D +V L+D CS + VF + + MI AL+
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANR---VFEECSSGDIIACTSMITALSQCDHGE 487
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ L+ M+ G PD F ++ AC + A E+GK+VH +K F D F + L+
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALV 547
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ F + R VVSW+ MI GLA G
Sbjct: 548 YTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 22 LCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L SFY K A F +I P +W+ ++ A + +G A+ ++ M G +
Sbjct: 43 LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F P V+K C+ + G +VH +A+ GF D+FV + L+ +Y G +D R++F+
Sbjct: 103 EFALPVVLK-CVPDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159
Query: 139 KM-RVRSVVSWTTMISG 154
+ R+ VSW ++S
Sbjct: 160 EADSERNAVSWNGLMSA 176
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ +D + L+D+ + D A VF + + N +I + G +A
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ + G ++ T V+K+ + A ++VH LAVK GF D V + L+D
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDS 448
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
Y KC + ++F++ +++ T+MI+ L+
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALS 481
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I++ G N+ L KLLD F G D AL VF ++ +FTWN MI+ L S +
Sbjct: 93 QILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGK 152
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L+ M+ P++ TF V++AC S+A + +++H + G + V + L+
Sbjct: 153 VFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLI 212
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
DLY + G VD R++FD + ++ SW MISGL+ +
Sbjct: 213 DLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKN 249
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II GL ++ L+DL S G D A VF + +W MI L+ + ++
Sbjct: 195 RIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVE 254
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ L+ M G P + F V+ AC ++E G+++HGL +K GFS D +V + L+
Sbjct: 255 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVS 314
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY G + +F M R V++ T+I+GL+ G
Sbjct: 315 LYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCG 351
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G S+D L+ L S G + A L F Q WN ++ G++ +AL ++
Sbjct: 604 GFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 663
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M G + FTF +KA + +++GK+VH + K G+ + V + ++ +Y KC
Sbjct: 664 ARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKC 723
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G + +K F ++ +++ VSW MI+ + G
Sbjct: 724 GSISDAKKQFLELSMKNEVSWNAMINAYSKHG 755
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + + L+D+ + GK D A + + V +W MI T +
Sbjct: 498 QIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK 557
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL + M+ G R D+ + AC A+++G+++H A +GFS D+ Q+ L+
Sbjct: 558 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 617
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
LY KCG+++ F++ ++W ++SG SG+ + A
Sbjct: 618 LYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 659
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G +++ + LL+L + + AL F + +V WN+M+ A + +
Sbjct: 400 KLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFR 459
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
++ M P+++T+P ++K CI +E G+++H +K F + +V S L+D+Y
Sbjct: 460 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYA 519
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
K G +D + + + VVSWTTMI+G
Sbjct: 520 KLGKLDTAWDILIRFAGKDVVSWTTMIAG 548
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G S+D + L+ L G A +FS + T+N +I L+ G +A
Sbjct: 297 VLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 356
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M +G PD T ++ AC + + G+++H K GF+ + ++ L++L
Sbjct: 357 MELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNL 416
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y KC D++ F + V +VV W M L A G LD
Sbjct: 417 YAKCSDIETALNYFLETEVENVVLWNVM---LVAYGLLD 452
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 74 GFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
G RP+ T ++++ C+ + ++++G+++H +K GF + + L+D YL GD+DG
Sbjct: 62 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAA 157
K+FD+M R++ +W MI LA+
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELAS 146
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 69/161 (42%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G ++ + ++ + + G A F ++ + +WN MI A + G +A
Sbjct: 701 ITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEA 760
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L ++ MI + RP+ T V+ AC ++KG E + + G + ++D
Sbjct: 761 LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVD 820
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ + G + + +M + + W T++S +++
Sbjct: 821 MLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNME 861
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL+++ LL L+D+ S G D A FS +W +I +G +
Sbjct: 560 QLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEE 619
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L++ M G RPD+ TF +IKA + I G+++H +++G+ +F S L+D
Sbjct: 620 ALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVD 679
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D + FD+M R+ +SW +IS A G+ A
Sbjct: 680 MYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 721
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH TW +M+RA G + AL L+ M+ G PD+ T V+ ++
Sbjct: 315 PHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----P 369
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+H A+K G +FV +TL+D Y K G + R++F +M + V++ M+ G + G
Sbjct: 370 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 429
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 22 LCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FY K D +F ++ ++N++I A + + L L+ M GF D
Sbjct: 475 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF--D 532
Query: 79 KFTFPFVIKACIA-SLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
+ P+ +A SL + GK++H V G + + + + L+D+Y KCG +D +
Sbjct: 533 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSN 592
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F +S +SWT +I+G +G + A
Sbjct: 593 FSNRSEKSAISWTALITGYVQNGQHEEA 620
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++GL + LLD +G A VF ++ T+N M+ + +G QAL
Sbjct: 376 IKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 435
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-----DMFVQST 119
L+ M G+ +H L SR ++FV ++
Sbjct: 436 QLFAAMRRAGY---------------------SRHPLHLLQYSHSRSRSTSVLNVFVNNS 474
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
L+D Y KC +D R++FD+M R VS+ +I+ A
Sbjct: 475 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 511
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + L+D+ + G D AL F ++ + +WN +I A G + A
Sbjct: 662 LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 721
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ M+ GF PD TF V+ AC + LA E K H + + S + ++D
Sbjct: 722 IKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVID 781
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ G +KM +M ++ + WT+++ G+ + A
Sbjct: 782 TLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELA 824
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL N+ L KL+ L S YG + A VF I ++ M++ + S A
Sbjct: 72 VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L M + +P + F +++K C + +++GKE+HG + F+ ++F + ++++
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNM 191
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC +D KMFD+M R +VSW T+I+G + +G
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNG 227
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ D A +F ++ + +WN +I + +G + +AL L M G RPD T V+
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
A + GK +HG A++AGF++ + + + L D+Y KCG V+ R +FD M ++VVS
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316
Query: 148 WTTMISGLAASGDLDAA 164
W +M+ G +G+ + A
Sbjct: 317 WNSMMDGYVQNGEPEKA 333
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L +D ++ L+ + S + D A +F+ + +WN MI +G +AL +
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCF 438
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M G +PD FT VI A +A L++ + K +HGL +++ +++FV + L+D+Y K
Sbjct: 439 SEMKSLGMKPDSFTMVSVIPA-LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSK 497
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CG + RK+FD + R V++W MI G G
Sbjct: 498 CGAIHMARKLFDMISDRHVITWNAMIDGYGTHG 530
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + L D+ S G + A L+F + V +WN M+ +G +A+
Sbjct: 275 IRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G P T + AC +E+GK VH + D+ V ++L+ +Y
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC VD +F+ + R+ VSW MI G A +G + A
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEA 434
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR L + + L+D+ S G A +F I HV TWN MI G A
Sbjct: 476 IIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAA 535
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M P+ T+ VI AC S +++G + + G M ++D
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595
Query: 123 LYLKCGDVDGGRKMFDKMRV 142
L + G + + M +
Sbjct: 596 LLGRAGRIKEAWDFIENMPI 615
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 18 KLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC-NG 74
KLL+LC S +G +AL +F I P WN +IR + A+ Y M NG
Sbjct: 38 KLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNG 97
Query: 75 F-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
R D T F +KAC +LA + ++H ++ GF+ D+ +Q+TL+D Y K GD+D
Sbjct: 98 LHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLA 157
Query: 134 RKMFDKMRVRSVVSWTTMISGLA 156
+K+FD+M + SW +I+G A
Sbjct: 158 QKLFDEMPQPDIASWNALIAGFA 180
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++R+G + D LL LLD + G D A +F ++ P + +WN +I
Sbjct: 128 QLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPAD 187
Query: 63 ALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A++ + M +G RP+ T + AC A+++G+ VH V+ + ++ V + ++
Sbjct: 188 AIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVI 247
Query: 122 DLYLKCGDVDGGRKMFDKMRV-RSVVSWTTMISGLAASGD 160
D+Y KCG +D +F+ MR +S+++W TMI A GD
Sbjct: 248 DMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGD 287
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQ 62
I+ L+++ + ++D+ + G D A VF +RC + TWN MI A + G +
Sbjct: 231 IVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHK 290
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L+ + +G PD ++ V+ AC + +E G ++ + G ++ +++D
Sbjct: 291 ALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVD 350
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L + G + + + ++V W T++ GD++ A
Sbjct: 351 LLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMA 392
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G + A VF ++ +V +WN +I +G +++AL ++ +M+ + PD
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMF 137
+ T VI AC + AI+ G+EVHG VK R D+ + + +D+Y KC + R +F
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 138 DKMRVRSVVSWTTMISGLAASGDLDAA 164
D M +R+V++ T+MISG A + AA
Sbjct: 313 DSMPIRNVIAETSMISGYAMAASTKAA 339
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 31/187 (16%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI-----DG 58
+I+ G SN+ + +L+D S G + VF ++ +++TWN ++ LT +
Sbjct: 46 VIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEA 105
Query: 59 SSL--------------------------QALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
SL +AL + +M GF ++++F V+ AC
Sbjct: 106 DSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGL 165
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+ KG +VH L K+ F D+++ S L+D+Y KCG+V+ +++FD+M R+VVSW ++I
Sbjct: 166 NDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLI 225
Query: 153 SGLAASG 159
+ +G
Sbjct: 226 TCFEQNG 232
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
T A L+F+++ +V +WN +I T +G + +AL L+ L+ P ++F ++
Sbjct: 334 ASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANIL 393
Query: 87 KACIASLAIEKGKEVH------GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140
KAC + G + H G ++G D+FV ++L+D+Y+KCG V+ G +F KM
Sbjct: 394 KACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM 453
Query: 141 RVRSVVSWTTMISGLAASG 159
R VSW MI G A +G
Sbjct: 454 MERDCVSWNAMIIGFAQNG 472
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 78 DKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D F ++ +CI S L+ + VH +K+GFS ++F+Q+ L+D Y KCG ++ GR++
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FDKM R++ +W ++++GL G LD A
Sbjct: 78 FDKMPQRNIYTWNSVVTGLTKLGFLDEA 105
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +D + L+D+ G + LVF ++ +WN MI +G +AL L+
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ------STLM 121
M+ +G +PD T V+ AC + +E+G+ + +RD V + ++
Sbjct: 482 REMLESGEKPDHITMIGVLSACGHAGFVEEGRHYF-----SSMTRDFGVAPLRDHYTCMV 536
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISG 154
DL + G ++ + M ++M ++ V W ++++
Sbjct: 537 DLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAA 570
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL+++ LL L+D+ S G D A FS +W +I +G +
Sbjct: 362 QLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEE 421
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L++ M G RPD+ TF +IKA + I G+++H +++G+ +F S L+D
Sbjct: 422 ALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVD 481
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D + FD+M R+ +SW +IS A G+ A
Sbjct: 482 MYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 523
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++GL + LLD +G A VF ++ T+N M+ + +G QAL
Sbjct: 162 IKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G FTF ++ + G +VH L +++ ++FV ++L+D Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
KC +D R++FD+M R VS+ +I+ A
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 313
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH TW +M+RA G + AL L+ M+ G PD+ T V+ ++
Sbjct: 101 PHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----P 155
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+H A+K G +FV +TL+D Y K G + R++F +M + V++ M+ G + G
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 215
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 22 LCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FY K D +F ++ ++N++I A + + L L+ M GF D
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF--D 334
Query: 79 KFTFPFVIKACIA-SLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
+ P+ +A SL + GK++H V G + + + + L+D+Y KCG +D +
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSN 394
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F +S +SWT +I+G +G + A
Sbjct: 395 FSNRSEKSAISWTALITGYVQNGQHEEA 422
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + L+D+ + G D AL F ++ + +WN +I A G + A
Sbjct: 464 LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 523
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ M+ GF PD TF V+ AC + LA E K H + + S + ++D
Sbjct: 524 IKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVID 583
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ G +KM +M ++ + WT+++ G+ + A
Sbjct: 584 TLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELA 626
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ G D + L+D FYGK + ++FS I P+ +W MI + +
Sbjct: 235 VLQSGFEADVSVANGLID---FYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEE 291
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A L++ G P F V+ AC +E GK VH LAVKA ++FV S L
Sbjct: 292 EKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSAL 351
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D+Y KCG ++ + FD+M R++V+W MI G A G D A
Sbjct: 352 VDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMA 395
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+ L+++ S + + A L+ S V TW +I +G AL ++ M +
Sbjct: 43 FIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD 102
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
+P+ FTFP KA + + GK+VH LAVKAG D+FV + D+Y K G +
Sbjct: 103 SIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEA 162
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RKMFD+M R++ +W +S G D A
Sbjct: 163 RKMFDEMPERNIATWNAYLSNSVLEGRYDDA 193
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G +D + D+ S G T+ A +F ++ ++ TWN + ++G AL
Sbjct: 135 VKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDAL 194
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+ G+ P+ TF + AC + + G+++HG +++GF D+ V + L+D Y
Sbjct: 195 TAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFY 254
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
KC V +F + + VSW +MI
Sbjct: 255 GKCHQVGCSEIIFSGISKPNDVSWCSMI 282
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-- 76
L+D+ G + A F ++ ++ TWN MI G + A+ L++ M C R
Sbjct: 351 LVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVA 410
Query: 77 PDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
P+ TF V+ AC + ++ G E+ + + G + ++DL + G V+ +
Sbjct: 411 PNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQ 470
Query: 136 MFDKMRVRSVVS-WTTMI 152
KM +R VS W ++
Sbjct: 471 FIKKMPIRPTVSVWGALL 488
>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL +D++L L+D+ G D A +F +I V +W MI +
Sbjct: 246 IVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREG 305
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ +I + RP+++TF V+ AC E G++VHG + GF F S+L+D+
Sbjct: 306 FSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDM 365
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+++ R + D +VS T++I G A +G D A
Sbjct: 366 YTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEA 406
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM--ICNGFRPDKFTFPF 84
G + A +F ++ ++W M+ +AL+LY+LM + N +P+ FT
Sbjct: 167 GLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS-KPNIFTVSS 225
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+ A A I +GKE+HG V+AG D + S+LMD+Y KCG +D R +FDK+ +
Sbjct: 226 AVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKD 285
Query: 145 VVSWTTMI 152
VVSWT+MI
Sbjct: 286 VVSWTSMI 293
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+P T+ +I+ C + A+E+GK+VH +GF + + + ++ +Y KCG + RK
Sbjct: 84 KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARK 143
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R V SW M++G A G L+ A
Sbjct: 144 VFDEMPERDVCSWNVMVNGYAEVGLLEEA 172
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G L+D+ + G + A V P + + +I +G +A
Sbjct: 347 MTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEA 406
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L ++L++ +G +PD TF V+ AC + +EKG E + + K + + L+D
Sbjct: 407 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVD 466
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G + + + +M ++ S W +++ G + G++D A
Sbjct: 467 LLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLA 509
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL N+ L KL+ L S YG + A VF I ++ M++ + S A
Sbjct: 72 VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L M + +P + F +++K C + +++GKE+HG + F+ ++F + ++++
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNM 191
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC +D KMFD+M R +VSW T+I+G + +G
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNG 227
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ D A +F ++ + +WN +I + +G + +AL L M G RPD T V+
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
A + GK +HG A++AGF++ + + + L D+Y KCG V+ R +FD M ++VVS
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316
Query: 148 WTTMISGLAASGDLDAA 164
W +M+ G +G+ + A
Sbjct: 317 WNSMMDGYVQNGEPEKA 333
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
L +D ++ L+ + S + D A +F+ + +WN MI +G +AL +
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCF 438
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126
+ M G +PD FT VI A +A L++ + K +HGL +++ +++FV + L+D+Y K
Sbjct: 439 SEMKSLGMKPDSFTMVSVIPA-LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSK 497
Query: 127 CGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CG + RK+FD + R V++W MI G G
Sbjct: 498 CGAIHMARKLFDMISDRHVITWNAMIDGYGTHG 530
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR G + + L D+ S G + A L+F + V +WN M+ +G +A+
Sbjct: 275 IRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M+ G P T + AC +E+GK VH + D+ V ++L+ +Y
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KC VD +F+ + R+ VSW MI G A +G + A
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEA 434
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR L + + L+D+ S G A +F I HV TWN MI G A
Sbjct: 476 IIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAA 535
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L L++ M P+ T+ VI AC S +++G + + G M ++D
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595
Query: 123 LYLKCGDVDGGRKMFDKMRV 142
L + G + + M +
Sbjct: 596 LLGRAGRIKEAWDFIENMPI 615
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G D AL F + TW+ MI G S +AL L++ M +G RP +FTF VI
Sbjct: 258 GSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVI 317
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A +GK+VH +K GF ++V + L+D+Y KC + RK FD ++ +V
Sbjct: 318 NACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIV 377
Query: 147 SWTTMISGLAASGDLDAA 164
WT+MI G +G+ + A
Sbjct: 378 LWTSMIGGYVQNGENEDA 395
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + ++ L+D+ + A F ++ P + W MI +G + A
Sbjct: 336 LLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDA 395
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G P++ T V+KAC + A+E+GK++H VK GF ++ + S L +
Sbjct: 396 LSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTM 455
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + G +F +M R V+SW MISGL+ +G
Sbjct: 456 YAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNG 491
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS--LQALLLYNLMIC 72
+ L++L + + A VF +I+ V +WN +I + G S + L+ M
Sbjct: 42 IANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRA 101
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132
P+ TF V A + G+ H +A+K RD+FV S+LM++Y K G
Sbjct: 102 ENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPE 161
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAA 157
RK+FD M R+ VSW TMISG A+
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYAS 186
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+++ G T A VF + + +W MI + +AL L+ LM
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMR 201
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
++F F V+ A + GK++H +AVK G + V + L+ +Y KCG +D
Sbjct: 202 REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ F+ ++ ++W+ MI+G A SGD D A
Sbjct: 262 DALQTFETSSDKNSITWSAMITGXAQSGDSDKA 294
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++YG + + L + + G LVF ++ V +WN MI L+ +G +
Sbjct: 436 RTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKE 495
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
AL L+ M G +PD TF ++ AC +E+G
Sbjct: 496 ALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG 531
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P +F + + +++KGK +H +K+ S +++ ++L++LY KC + + +
Sbjct: 4 PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFV 62
Query: 137 FDKMRVRSVVSWTTMISGLAASG 159
F++++ + VVSW +I+G + G
Sbjct: 63 FERIQNKDVVSWNCIINGYSQHG 85
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL-- 61
+++ GL D L ++D+ + G A+ +F + P+V +N MI L D +++
Sbjct: 243 VVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHK 302
Query: 62 ----QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+AL LY+ + G P +FTF VI+AC + IE GK++HG +K F D F+
Sbjct: 303 EVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIG 362
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
S L+DLY ++ G + F + + VV+WT MISG
Sbjct: 363 SALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISG 399
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++++ D + L+DL + F + V TW MI + +
Sbjct: 349 QVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFER 408
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L++ ++ G +PD FT V+ AC + + G+++ A K+GF R + ++ +
Sbjct: 409 ALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIH 468
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y + G+V+ + F +M VVSW+ +IS A G
Sbjct: 469 MYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHG 505
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G T A + ++ + ++NL+I A + G + ++L + + + D+FT+
Sbjct: 61 GDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAA 120
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + +++GK VH LAV G + +FV ++L+ +Y +CGD+ R++FD R
Sbjct: 121 LAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDD 180
Query: 146 VSWTTMISG 154
VSW +++SG
Sbjct: 181 VSWNSLVSG 189
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL+ + L+ + + G A VF +WN ++ G+ + L ++
Sbjct: 144 GLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVF 203
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKG--KEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LM + F VIK C +G + VHG VKAG D+F+ S ++D+Y
Sbjct: 204 ALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYA 263
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K G + +F + +VV + MI+GL
Sbjct: 264 KRGALSEAVALFKSVLDPNVVVFNAMIAGL 293
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY--LKCGDVDGGRKMFDKMRVRSVVSWTTM 151
++ + VHG +A S +F+++TL+ Y L GD R++ D+M R+ VS+ +
Sbjct: 25 SLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLL 84
Query: 152 ISGLAASGDLDAA 164
I + +G + +
Sbjct: 85 IDAYSRAGQTEES 97
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL+++ LL L+D+ S G D A FS +W +I +G +
Sbjct: 362 QLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEE 421
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL L++ M G RPD+ TF +IKA + I G+++H +++G+ +F S L+D
Sbjct: 422 ALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVD 481
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG +D + FD+M R+ +SW +IS A G+ A
Sbjct: 482 MYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 523
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++GL + LLD +G A VF ++ T+N M+ + +G QAL
Sbjct: 162 IKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G FTF ++ + G +VH L +++ ++FV ++L+D Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
KC +D R++FD+M R VS+ +I+ A
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 313
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
PH TW +M+RA G + AL L+ M+ G PD+ T V+ ++
Sbjct: 101 PHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----P 155
Query: 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+H A+K G +FV +TL+D Y K G + R++F +M + V++ M+ G + G
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 215
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 22 LCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L FY K D +F ++ ++N++I A + + L L+ M GF D
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF--D 334
Query: 79 KFTFPFVIKACIA-SLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
+ P+ +A SL + GK++H V G + + + + L+D+Y KCG +D +
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSN 394
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F +S +SWT +I+G +G + A
Sbjct: 395 FSNRSEKSAISWTALITGYVQNGQHEEA 422
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + L+D+ + G D AL F ++ + +WN +I A G + A
Sbjct: 464 LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 523
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ ++ M+ GF PD TF V+ AC + LA E K H + + S + ++D
Sbjct: 524 IKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVID 583
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
+ G +KM +M ++ + WT+++ G+ + A
Sbjct: 584 TLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELA 626
>gi|15231572|ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26540
gi|9293933|dbj|BAB01836.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643655|gb|AEE77176.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 700
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++YG S + L ++D+ YGK A VF +I P +WN+++R G +
Sbjct: 188 VVKYGYSGNVDLETSIVDV---YGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFN 244
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+A++++ M+ RP T V+ AC SLA+E GK +H +AVK D V +++
Sbjct: 245 DEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSV 304
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
D+Y+KC ++ R++FD+ R + + SWT+ +SG A SG
Sbjct: 305 FDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSG 343
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI-RCPHVFTWNLMIRALTIDGSSLQ 62
I R+G + ++ LLD+ G A + F Q+ +WN ++ + G S Q
Sbjct: 421 IYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQ 480
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL + M +P K+T ++ C A+ GK +HG ++ G+ D+ ++ ++D
Sbjct: 481 ALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVD 539
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KC D ++F + R ++ W ++I G +G
Sbjct: 540 MYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNG 576
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 26 YGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82
YGK D A +F ++ +WN +I A +G S + ++ M +G R + +F
Sbjct: 106 YGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSF 165
Query: 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142
V+K+C L + +++H VK G+S ++ ++++++D+Y KC + R++FD++
Sbjct: 166 AGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVN 225
Query: 143 RSVVSWTTMISGLAASGDLDAA 164
S VSW ++ G D A
Sbjct: 226 PSDVSWNVIVRRYLEMGFNDEA 247
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G T A +F + ++ +WN M+ +AL LM D T +++
Sbjct: 343 GLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWIL 402
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSV 145
C ++ GK+ HG + G+ ++ V + L+D+Y KCG + F +M +R
Sbjct: 403 NVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDE 462
Query: 146 VSWTTMISGLAASGDLDAA 164
VSW +++G+A G + A
Sbjct: 463 VSWNALLTGVARVGRSEQA 481
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G D ++ ++D+ S D+A+ VF + + WN +IR +G S +
Sbjct: 522 LIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEV 581
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMD 122
L+ L+ G +PD TF +++ACI +E G + ++ K S + +++
Sbjct: 582 FELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIE 641
Query: 123 LYLKCG 128
LY K G
Sbjct: 642 LYCKYG 647
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ + ++C + + + ++V V +F+ + ++ Y KCG VD R++F++M
Sbjct: 64 YERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMP 123
Query: 142 VRSVVSWTTMISGLAASGDLD 162
R SW +I+ A +G D
Sbjct: 124 ERDGGSWNAVITACAQNGVSD 144
>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 796
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL-- 61
+++ G +D L ++ + + G A+ +F + P+V +N MI L D +++
Sbjct: 243 VVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGT 302
Query: 62 ----QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+AL LY+ + G P +FTF VI+AC + IE GK++HG +K F D F+
Sbjct: 303 DVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIG 362
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
S L+DLYL G ++ G + F + + VV+WT MISG
Sbjct: 363 SALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISG 399
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++++ D + L+DL G + F+ + V TW MI + +
Sbjct: 349 QVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFER 408
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLM 121
AL L++ ++ G +PD FT V+ AC ASLA+ + G+++ A K+GF R + ++ +
Sbjct: 409 ALTLFHELLGAGLKPDPFTISSVMNAC-ASLAVARTGEQIQCFATKSGFGRFTAMGNSCI 467
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y + GDV + F +M +VSW+ +IS A G
Sbjct: 468 HMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHG 505
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKAC 89
HA + ++ + ++NL+I A + G +L + G R D+FT+ + AC
Sbjct: 65 HARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAAC 124
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+ + +GK VH L+V G + +FV ++L+ +Y +CGD+ R++FD R VSW
Sbjct: 125 SRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWN 184
Query: 150 TMISGLAASGDLD 162
++SG +G D
Sbjct: 185 ALVSGYVRAGAQD 197
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++ + L+ + + G A VF +WN ++ G+ L ++
Sbjct: 144 GIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVF 203
Query: 68 NLMICNGFRPDKFTFPFVIKACIAS--LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
+M +G + F VIK C S ++ VHG VKAGF D+F+ S ++ +Y
Sbjct: 204 AMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYA 263
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
K G + +F + +VV + MI+GL
Sbjct: 264 KKGALSEAVALFKSVLDPNVVVFNAMIAGL 293
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D+ + L+D+ S GK D A+ +F ++ + TWN MI A
Sbjct: 344 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 403
Query: 64 LLLYNLM------ICNG-----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
LLL + M + G +P+ T ++ +C A A+ KGKE+H A+K +
Sbjct: 404 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 463
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+ V S L+D+Y KCG + RK+FD++ ++V++W +I G+ A
Sbjct: 464 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 515
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 47 WNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN MI + + +ALLL+ + G + T V+ AC+ S A + + +HG
Sbjct: 285 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 344
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
VK G RD FVQ+TLMD+Y + G +D ++F KM R +V+W TMI+G
Sbjct: 345 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 393
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 2 QKIIRYGLSNDQL---LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
+++ YGL +L ++ L+ + GK + ++ + TWN ++ +L +
Sbjct: 135 KQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 194
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQ 117
L+AL M+ G PD+FT V+ AC + GKE+H A+K G + FV
Sbjct: 195 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 254
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
S L+D+Y C V GR++FD M R + W MI+G + +
Sbjct: 255 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 295
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCG 128
MI G +PD + FP ++KA +E GK++H K G+ D + V +TL++LY KCG
Sbjct: 1 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
D K+FD++ R+ VSW ++IS L +
Sbjct: 61 DFGAVYKVFDRISERNQVSWNSLISSLCS 89
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ L+ D + L+D+ + G + VF QI +V TWN++I A + G+ +A+
Sbjct: 457 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 516
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L +M+ G +P++ TF V AC S +++G
Sbjct: 517 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 550
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 4 IIRYGLSNDQLLV-RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++G D + V L++L G VF +I + +WN +I +L
Sbjct: 36 VYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 95
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK----GKEVHGLAVKAGFSRDMFVQS 118
AL + M+ P FT V+ AC ++L + + GK+VH ++ G + F+ +
Sbjct: 96 ALEAFRCMLDENVEPSSFTLVSVVTAC-SNLPMPEGLMMGKQVHAYGLRKG-ELNSFIIN 153
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
TL+ +Y K G + + + R +V+W T++S L + L
Sbjct: 154 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQL 196
>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
Length = 598
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ G +D + L+++ + F++IRC V +W M G +
Sbjct: 269 QLVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSK 328
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ + + M+ +G P+ +TF AC + +++G++VHG +K G D+ V + L+D
Sbjct: 329 AIGILSQMMLDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALID 388
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCG V K+F M+ R V+SWT MI G A +G A
Sbjct: 389 MYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEA 430
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G + L L + +G+ + A+ +F+ + +WN ++ S +Q
Sbjct: 171 VRLGFDSSVFLTNAFLAAMARHGQLEDAVRLFNGSSVRDIVSWNTLLAGFARHWS-VQGW 229
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+L+ M+ R D F+F V+ AS ++ G +VH VK+GF D++V ++L+++Y
Sbjct: 230 ILWRRMVREAVRADGFSFSTVLSGLAASTSLASGLQVHAQLVKSGFGDDVYVGNSLVEMY 289
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K + G F ++R + VVSWT M +G G+ A
Sbjct: 290 MKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKA 329
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 42 PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC-IASLAIEKG 98
PH +W+ I L G AL L+ M G P++F + A A
Sbjct: 104 PHRNAVSWSAAIAGLAQGGRPRDALALFIRMRLAGCPPNEFALASALNASSFAPAGTGCA 163
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++++ L+V+ GF +F+ + + + G ++ ++F+ VR +VSW T+++G A
Sbjct: 164 RQLYALSVRLGFDSSVFLTNAFLAAMARHGQLEDAVRLFNGSSVRDIVSWNTLLAGFA 221
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G +D + L+D+ + G A VF ++ V +W MI +G + +A
Sbjct: 371 VIKLGDDSDIGVNNALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEA 430
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMD 122
+ +++ M+ G P++ T ++ AC +++G + + K G + ++D
Sbjct: 431 VEVFDDMLLKGVAPNRVTMICILYACSQGGFVDEGWIYFNAMEDKFGIQPGEDHYACMVD 490
Query: 123 LYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGD 160
L K G ++ ++ +M V+ W ++ G+
Sbjct: 491 LLGKAGHIEEAEELISRMPFPPGVLVWQALLGACHRHGN 529
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+F+ + L+ Y KC G ++ D+M R+ VSW+ I+GLA G
Sbjct: 77 VFLHNHLLIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGG 122
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 24 SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
SFY A+ VF ++ +FTWN MI A G ++A+ LY M G D FTFP
Sbjct: 97 SFYD----AVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFP 152
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK--MR 141
V+KAC A G E+HG+AVK G+ +FV + L+ +Y KCGD+ G R +FD M
Sbjct: 153 CVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLME 212
Query: 142 VRSVVSWTTMISGLAASGD 160
VSW ++IS G+
Sbjct: 213 KDDPVSWNSIISAHVGEGE 231
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL+ D L+ ++++ D+A VF I + +W MI +G +++A
Sbjct: 479 VLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEA 537
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+N +I PD T V+ A A +++KGKE+HG ++ GF + + ++L+D+
Sbjct: 538 LELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDM 597
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG ++ R +F+ ++ R ++ WT+MI+ G
Sbjct: 598 YARCGTMENARNIFNYVKQRDLILWTSMINANGMHG 633
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+WN +I A +G SL+AL L+ M G + +TF ++AC I+ G+ +H +
Sbjct: 218 SWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVI 277
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
+K+ D++V + L+ +Y CG ++ ++F M + VSW T++SG+
Sbjct: 278 LKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGM 327
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ D + L+ + + G+ + A VF + +WN ++ + + A
Sbjct: 277 ILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDA 336
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ + M +G +PD+ + +I A S + G EVH A+K G +M + ++L+D+
Sbjct: 337 INHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDM 396
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KC V F+ M + ++SWTT+I+G A +
Sbjct: 397 YGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQN 431
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
I++G+ ++ + L+D+ YGK + F + + +W +I + L
Sbjct: 379 IKHGIDSNMHIGNSLIDM---YGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHL 435
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL L + D ++ AC + + KE+HG +K G + D+ +Q+ ++
Sbjct: 436 DALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA-DILIQNAIV 494
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++Y + VD R +F+ + + +VSWT+MI+ +G
Sbjct: 495 NVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNG 532
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRK 135
P + + ++ C + A+ +G+++H +K + +F+ + + +Y KCG K
Sbjct: 44 PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103
Query: 136 MFDKMRVRSVVSWTTMISGLAASG 159
+FDKM R++ +W MI ++G
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAG 127
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + L+ L+D+ + G ++A +F+ ++ + W MI A + G A
Sbjct: 579 LIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDA 638
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
+ L++ M PD TF ++ AC S + +GK+
Sbjct: 639 IDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQ 675
>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
Length = 448
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL + ++ L+++ +A LVF +I C TWN ++ A DG +A
Sbjct: 2 VEKVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEA 61
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M G + TF V++AC ++ A+ G+ +H V G R++ V + L+++
Sbjct: 62 LEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNM 121
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + R++FD+M VV+WT +++G A G ++ +
Sbjct: 122 YAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEES 162
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q ++ GL + ++ L+++ + GK A VF Q+ V W ++ G
Sbjct: 101 QNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIE 160
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
++ L M G +P+ TF ++ AC S +++ ++ GF ++
Sbjct: 161 ESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARDCFIAMADHGFFPLPEHFRCVI 220
Query: 122 DLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
DL + G ++ +++ D M + +W TM+S D+
Sbjct: 221 DLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRLQKDV 261
>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
Length = 830
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL +D L+ L+ + S G A +VF +R + WN M A G A+
Sbjct: 337 VESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDSLRAKDLAAWNCMFSAYAKHGRLRDAM 396
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIA---SLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L M + RPDK TF ++ AC A SL +E GK+ H ++ G+ D + + L+
Sbjct: 397 ELQEQMKLDQVRPDKVTFVSILSACTATGSSLGLETGKKTHEEILEQGYRLDAVLGTALV 456
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y CG +D + +F+KM R ++SWTTM+ + LD A
Sbjct: 457 RMYAACGRLDDAKLVFEKMESRDLISWTTMLGAYTQARLLDEA 499
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I + G D L+ LL++ S G + A F I P V +WNL+I A T G
Sbjct: 536 ERIRQLGWEKDPLVANALLEVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHPD 595
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A L M G PD T VI + + KGK +H ++AG D V + L+
Sbjct: 596 RAFDLLRAMELQGHNPDSVTLATVINSRASLQLFRKGKIIHDSILEAGMEIDSVVATALV 655
Query: 122 DLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASGDLDAA 164
+ Y KCGD R +F + +VV+W + ++ A SG A
Sbjct: 656 NFYGKCGDFATARSIFQGVGAADNVVTWNSTLAAYAQSGHASEA 699
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ GL + L ++ + D+A VF ++ W M+ A G +
Sbjct: 33 QIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKMASRDAGLWAPMMAAYARVGHLQE 92
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L++ M+ G PD+ T VI AC S ++ +G+ VH + F + V + L+
Sbjct: 93 ATGLFHRMLDEGVVPDRVTLLTVINACSESGSLAEGRRVHRRIQGSDFEWSVDVGTALVR 152
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+Y KCG VD R++FD +R ++VSWTTM+S G L+ A
Sbjct: 153 MYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQA 195
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 27 GKTDHALLVF-SQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
G D A VF +++ ++ +W M+ A G QAL L+ M+ G P++ T+ V
Sbjct: 158 GSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEMLQEGVAPNEITYVSV 217
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC ++ G++VH L ++G D FV + L+ +Y +CG ++ +FD + R++
Sbjct: 218 LNAC----DLDAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGSLEDASLVFDGIADRNL 273
Query: 146 VSWTTMISGLAA 157
+ W +MI+G A+
Sbjct: 274 LVWNSMIAGYAS 285
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + GL +D + L+ + G + A LVF I ++ WN MI +
Sbjct: 233 IEQSGLDSDAFVGNALIKMYRRCGSLEDASLVFDGIADRNLLVWNSMIAGYASLNEAQGT 292
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG--KEVHGLAVKAGFSRDMFVQSTLM 121
L + M+ +G++ DK T V+ AC S ++ + +H LAV++G D V + L+
Sbjct: 293 LEFFRKMLLDGWKGDKHTLLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVGTALV 352
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
+ + GD + +FD +R + + +W M S A G L
Sbjct: 353 KIKSEQGDRKSAKMVFDSLRAKDLAAWNCMFSAYAKHGRL 392
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ G D +L L+ + + G+ D A LVF ++ + +W M+ A T
Sbjct: 438 EEILEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKMESRDLISWTTMLGAYTQARLLD 497
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+A + + + G PD+ + AC + ++ H + G+ +D V + L+
Sbjct: 498 EASITFRRIQLEGHTPDRVALIAALGACTN---LSSARDFHERIRQLGWEKDPLVANALL 554
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y CG ++ + FD + SV+SW +I+ G D A
Sbjct: 555 EVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHPDRA 597
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++AC + KGKE+H V G +++ + + ++ +YL C VD RK+FDKM R
Sbjct: 18 LRAC---HTLPKGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKMASRDA 74
Query: 146 VSWTTMISGLAASGDLDAA 164
W M++ A G L A
Sbjct: 75 GLWAPMMAAYARVGHLQEA 93
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ + +W ++ A + +AL + LM GF P++FTF V+ +C +
Sbjct: 483 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 542
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+E G++VHGL KAG + ++S L+D+Y KCG + K+FDK+ +VSWT +ISG
Sbjct: 543 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISG 602
Query: 155 LAASGDLDAA 164
A G ++ A
Sbjct: 603 YAQHGLVEDA 612
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ--IRCPHVFTWNLMIRALTIDGSSLQALL 65
G+ + L+ L+D+ S G A VF I C WN MI + G S +AL
Sbjct: 352 GIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALE 411
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF-VQSTLMDLY 124
LY M NG D +T+ V A AS +++ G+ VHG+ +K G + V + + D Y
Sbjct: 412 LYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 471
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG ++ RK+FD+M R +VSWTT+++ + S
Sbjct: 472 SKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQS 505
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ +VF+W +MI T G + M+ +G PDKF + +I++CI +
Sbjct: 177 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 236
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+E GK VH V GF+ +FV ++L+++Y K G ++ +F+ M + VSW MISG
Sbjct: 237 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISG 296
Query: 155 LAASG 159
++G
Sbjct: 297 CTSNG 301
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ G + + LL++ + G + + VF+ + + +WN MI T +G L+
Sbjct: 246 QIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLE 305
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L+ M P+ +T V KA + + GKEV A + G ++ V + L+D
Sbjct: 306 AFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALID 365
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS--WTTMISGLAASG 159
+Y KCG + R +FD + V+ W MISG + SG
Sbjct: 366 MYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 404
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQ-STLMDLYLKCGDVDGGRKMFDKMRV 142
V++ C +I + K VHGL +K+ F +D+ V + +Y KC + +FD+M
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 183
Query: 143 RSVVSWTTMISGLAASG 159
R+V SWT MI G G
Sbjct: 184 RNVFSWTVMIVGSTEHG 200
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL ++ + L+D+ + G A VF +I P + +W +I G A
Sbjct: 553 LCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDA 612
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMD 122
L L+ M +G + + T V+ AC +E+G + G +M + ++D
Sbjct: 613 LQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIID 672
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
L + G +D + KM + + + W T++ G G+++
Sbjct: 673 LLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 713
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
+ A VF + + WN +I ++G +AL LY M G PD FT ++ AC
Sbjct: 58 ESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSAC 117
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-RSVVSW 148
+ G+ H VK G ++++ + L+DLY KCG + RK+FD+M + R+VVSW
Sbjct: 118 AELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSW 177
Query: 149 TTMISGLAASG 159
T++I GLA +G
Sbjct: 178 TSLIVGLAVNG 188
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQ 62
+++ GL+ + LLDL + G A +F ++ +V +W +I L ++G +
Sbjct: 133 MVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKE 192
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100
AL + M G P + TF V+ AC + +G E
Sbjct: 193 ALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFE 230
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 83/160 (51%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL N + L+D+ GK + VF ++ +V +W +I L G +++AL
Sbjct: 184 VKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEAL 243
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L ++ M + D TF +KA S + GK +H +K GF FV +TL +Y
Sbjct: 244 LYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMY 303
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG D ++F+KM++ VVSWTT+I+ G+ + A
Sbjct: 304 NKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHA 343
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R GL + + ++ L S G A LVF I + +W+ +I + G + +A
Sbjct: 385 VLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEA 444
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M G +P++F V+ C + +E+GK+VH + G + V S L+ +
Sbjct: 445 FDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISM 504
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG V+ K+F+ M++ +++SWT MI+G A G
Sbjct: 505 YSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHG 540
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSF------YGKTDHALLVFSQIRCPHVFTWNLMIRAL 54
+Q+ + L+ + V +L+L S G+ + +F ++ +W +I
Sbjct: 72 IQQAKQEQLAQNAYSVHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGY 131
Query: 55 TIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113
S +AL+L+ N+ + G + D+F +KAC + I G+ +HG +VK+G
Sbjct: 132 VNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINS 191
Query: 114 MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+FV S L+D+Y+K G ++ G ++F KM R+VVSWT +I+GL +G
Sbjct: 192 VFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAG 237
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ I+ G ++ L + + GK D+ + +F +++ P V +W +I G
Sbjct: 283 QTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEH 342
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLM 121
A+ + M + P+K+TF VI AC A+LAI K G+++HG ++ G + V ++++
Sbjct: 343 AVEAFKRMRKSNVSPNKYTFAAVISAC-ANLAIAKWGEQIHGHVLRLGLVDALSVANSIV 401
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LY K G + +F + + ++SW+T+I+ + G
Sbjct: 402 TLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGG 439
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 24/168 (14%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ ++ ++ L+ + S G + A +F+ ++ ++ +W MI G S +A+ L+
Sbjct: 490 GIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLF 549
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST-------- 119
+ G +PD TF V+ AC H V GF M + +
Sbjct: 550 EKISSVGLKPDYVTFIGVLTAC-----------SHAGMVDLGFYYFMLMTNEYQISPSKE 598
Query: 120 ----LMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++DL + G + M M + V W+T++ GD+D
Sbjct: 599 HYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVD 646
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P ++ P C + K ++ LA A +M ++ + +K G + R M
Sbjct: 56 PLTYSSPGTATECRELIQQAKQEQ---LAQNAYSVHNMLELNSELKQLVKQGQLCKSRYM 112
Query: 137 FDKMRVRSVVSWTTMISGLAASGD 160
FDKM R +SWTT+I+G + D
Sbjct: 113 FDKMTHRDEISWTTLIAGYVNASD 136
>gi|302825931|ref|XP_002994532.1| hypothetical protein SELMODRAFT_43839 [Selaginella moellendorffii]
gi|300137477|gb|EFJ04403.1| hypothetical protein SELMODRAFT_43839 [Selaginella moellendorffii]
Length = 402
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I GL D +L L+ L YG+ D A VF I + +WN M+ A +G S
Sbjct: 109 RHISSSGLEFDLMLQNSLVALYGRYGRVDLARSVFQSIPEKSLVSWNAMLTAYARNGHSR 168
Query: 62 QALLLYNLMICNGFRPDKF-TFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQST 119
+A YN MI G P++ T V+ AC +S ++ GK +H AV GF + D +Q
Sbjct: 169 EAAHAYNEMIFTGIEPNEISTLTTVLGACSSSRDLKTGKMIHSRAVCCGFDKEDQVLQVA 228
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+++ Y KCG V R++FD + +SVV T MI G A G
Sbjct: 229 VVNFYGKCGAVADARRVFDGIAQKSVVVHTAMIGGYAQHG 268
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I G D L L+ L G D A +F + WN +I A +G ++
Sbjct: 13 IAAAGFGTDPDLGALLIQLYGKCGSVDRARSLFESLPRKSSLCWNFVIGAYAGNGRGEES 72
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M G RPD+ TF V+ AC + +G +H +G D+ +Q++L+ L
Sbjct: 73 LYLFRRMALEGERPDRHTFVRVLGACTNT---AQGTAIHRHISSSGLEFDLMLQNSLVAL 129
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y + G VD R +F + +S+VSW M++ A +G
Sbjct: 130 YGRYGRVDLARSVFQSIPEKSLVSWNAMLTAYARNG 165
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 2/156 (1%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
DQ+L +++ G A VF I V MI G SL+AL +Y+ M
Sbjct: 221 EDQVLQVAVVNFYGKCGAVADARRVFDGIAQKSVVVHTAMIGGYAQHGHSLEALEIYHAM 280
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM-DLYLKCGD 129
G PD TF + AC + +++GK + + V SR M DL + G
Sbjct: 281 NLEGVTPDSTTFVCALVACNHAGLLQRGKLLFQILVSDHSSRPSLEHFLCMADLLGRAGR 340
Query: 130 VDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLDAA 164
VD R++ + M + V+W ++ S DL+ A
Sbjct: 341 VDFAREVVEGMPFEADTVAWKALLGSSRGSIDLEKA 376
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+H AGF D + + L+ LY KCG VD R +F+ + +S + W +I A +G
Sbjct: 9 LHSCIAAAGFGTDPDLGALLIQLYGKCGSVDRARSLFESLPRKSSLCWNFVIGAYAGNG 67
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 31 HALLVFSQ-------IRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83
HA L+ Q I P + WN +IRA + +A+ Y M G PDK+TF
Sbjct: 72 HARLIVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFT 131
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
FV+KAC +L +G +H D+F+ + L+D+Y K G +D RK+FDKM +
Sbjct: 132 FVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGK 191
Query: 144 SVVSWTTMISGLAASGD 160
V SW MISGL+ S +
Sbjct: 192 DVASWNAMISGLSQSSN 208
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G+++D ++ ++ + + G+ A F + + W+ + AL G +AL
Sbjct: 355 LQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEAL 414
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M G +PDK ++ AC + GK +H +KA D+ V +TL+ +Y
Sbjct: 415 SIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMY 474
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+C +F++M + VV+W T+I+G GD
Sbjct: 475 TRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGD 510
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q I L D + L+D+ G D+A VF ++ V +WN MI L+ +
Sbjct: 151 QDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPC 210
Query: 62 QALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF--VQS 118
+AL ++ M + G PD + + A ++ K +HG V+ R +F V +
Sbjct: 211 EALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVR----RCVFGVVSN 266
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+L+D+Y KCG+V ++FD+M V+ +SW TM++G G
Sbjct: 267 SLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHG 307
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ S G+ A +F Q+ +W M+ G + L L + M + +
Sbjct: 268 LIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMN 327
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
K + + A + +EKGKEVH A++ G + D+ V + ++ +Y KCG++ ++ F
Sbjct: 328 KISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFL 387
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+ R +V W+ +S L +G
Sbjct: 388 SLEGRDLVVWSAFLSALVQAG 408
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHV---FTWNLMIRALTIDGS 59
II+ G+ ++ + L+D+ + G A +F + HV +WN+MI +G
Sbjct: 555 NIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNK--HVKDEVSWNVMIAGYLHNGC 612
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ +A+ +N M RP+ TF ++ A + + H ++ GF + ++
Sbjct: 613 ANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNS 672
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D+Y K G + K F +M + +SW M+SG A G + A
Sbjct: 673 LIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVA 717
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 31 HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90
+A+ +F+++ V WN +I T G AL ++ + +G +PD T ++ AC
Sbjct: 482 YAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACA 541
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD-KMRVRSVVSWT 149
+ G HG +K G +M V+ L+D+Y KCG + +F V+ VSW
Sbjct: 542 LLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWN 601
Query: 150 TMISGLAASGDLDAA 164
MI+G +G + A
Sbjct: 602 VMIAGYLHNGCANEA 616
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IIR G + L+ L+D+ + G+ ++ F ++ +WN M+ + G A
Sbjct: 658 IIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVA 717
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L L++LM D ++ V+ AC + I++G+ + + K M + ++D
Sbjct: 718 LALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVD 777
Query: 123 LYLKCGDVDGGRKMFDKM 140
L G D + DKM
Sbjct: 778 LLGCAGLFDEVLCLIDKM 795
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D+ + L+D+ S GK D A+ +F ++ + TWN MI A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490
Query: 64 LLLYNLM------ICNG-----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
LLL + M + G +P+ T ++ +C A A+ KGKE+H A+K +
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+ V S L+D+Y KCG + RK+FD++ ++V++W +I G+ A
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 47 WNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN MI + + +ALLL+ + G + T V+ AC+ S A + + +HG
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
VK G RD FVQ+TLMD+Y + G +D ++F KM R +V+W TMI+G
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 2 QKIIRYGLSNDQL---LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
+++ YGL +L ++ L+ + GK + ++ + TWN ++ +L +
Sbjct: 222 KQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQ 117
L+AL M+ G PD+FT V+ AC + GKE+H A+K G + FV
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 341
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
S L+D+Y C V GR++FD M R + W MI+G + +
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 34 LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93
+ SQ R P W ++R+ +A+L Y MI G +PD + FP ++KA
Sbjct: 54 IFISQSRSPE--WWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQ 111
Query: 94 AIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+E GK++H K G+ D + V +TL++LY KCGD K+FD++ R+ VSW ++I
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171
Query: 153 SGLAA 157
S L +
Sbjct: 172 SSLCS 176
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ L+ D + L+D+ + G + VF QI +V TWN++I A + G+ +A+
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L +M+ G +P++ TF V AC S +++G
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 637
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 4 IIRYGLSNDQLLV-RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++G D + V L++L G VF +I + +WN +I +L
Sbjct: 123 VYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK----GKEVHGLAVKAGFSRDMFVQS 118
AL + M+ P FT V+ AC ++L + + GK+VH ++ G + F+ +
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTAC-SNLPMPEGLMMGKQVHAYGLRKG-ELNSFIIN 240
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
TL+ +Y K G + + + R +V+W T++S L + L
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQL 283
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 2 QKIIRYGLSNDQLLVRK-----LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI 56
++I Y L N+ L+ L+D+ + + VF I + WN MI
Sbjct: 317 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 376
Query: 57 DGSSLQALLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115
+G +AL+L+ MI G P+ T V+ AC+ A + +HG AVK GF D +
Sbjct: 377 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRY 436
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
VQ+ LMD+Y + G +D +FD M VR VSW TMI+G SG A
Sbjct: 437 VQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNA 485
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D+ + L+D+ S GK D + +F + +WN MI + G AL
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNAL 486
Query: 65 LLYNLM-----------------ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
+L + M ++P+ T V+ C A AI KGKE+H A++
Sbjct: 487 VLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIR 546
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ D+ V S L+D+Y KCG ++ R++F++M ++V++W +I G + A
Sbjct: 547 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEA 603
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ D + +F + +WN MI + + +AL + LM+ G D T V+
Sbjct: 245 GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVL 304
Query: 87 KACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC ++ GKE+H ++ + FV S L+D+Y C V+ GR++FD + R +
Sbjct: 305 PACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRI 364
Query: 146 VSWTTMISGLAASG 159
W MISG A +G
Sbjct: 365 ELWNAMISGYARNG 378
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
+W +R+ T +A+ Y M +G RPD F FP V+KA ++ G+++H A
Sbjct: 59 SWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118
Query: 106 VKAGF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
VK G+ S + V +TL+++Y KCG + K+FD++ R VSW + I+ L
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAAL 169
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+++G + + V L + YGK VF +I +WN I AL
Sbjct: 119 VKFGYGSSSVTVANTL--VNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWE 176
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG----KEVHGLAVKAGFSRDMFVQ 117
QAL + M FT V AC ++L + G K++HG +++ G + F
Sbjct: 177 QALEAFRAMQMENMELSSFTLVSVALAC-SNLGVMHGLRLGKQLHGYSLRVG-DQKTFTN 234
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ LM +Y K G VD + +F+ R +VSW TMIS + S A
Sbjct: 235 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEA 281
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR L++D + L+D+ + G + + VF+++ +V TWN++I A + G +AL
Sbjct: 545 IRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEAL 604
Query: 65 LLYNLMICNGFR-----PDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSR 112
L+ M+ R P++ TF V AC S I +G K HG+ +
Sbjct: 605 ELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEP----TS 660
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR--SVVSWTTMI 152
D + + ++DL + G ++ ++ + M V +W++++
Sbjct: 661 DHY--ACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLL 700
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL D+ + L+D+ S GK D A+ +F ++ + TWN MI A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490
Query: 64 LLLYNLM------ICNG-----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112
LLL + M + G +P+ T ++ +C A A+ KGKE+H A+K +
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+ V S L+D+Y KCG + RK+FD++ ++V++W +I G+ A
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 47 WNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105
WN MI + + +ALLL+ + G + T V+ AC+ S A + + +HG
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431
Query: 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
VK G RD FVQ+TLMD+Y + G +D ++F KM R +V+W TMI+G
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 2 QKIIRYGLSNDQL---LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
+++ YGL +L ++ L+ + GK + ++ + TWN ++ +L +
Sbjct: 222 KQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQ 117
L+AL M+ G PD+FT V+ AC + GKE+H A+K G + FV
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 341
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
S L+D+Y C V GR++FD M R + W MI+G + +
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 34 LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93
+ SQ R P W ++R+ +A+L Y MI G +PD + FP ++KA
Sbjct: 54 IFISQSRSPE--WWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQ 111
Query: 94 AIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+E GK++H K G+ D + V +TL++LY KCGD K+FD++ R+ VSW ++I
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171
Query: 153 SGLAA 157
S L +
Sbjct: 172 SSLCS 176
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ L+ D + L+D+ + G + VF QI +V TWN++I A + G+ +A+
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L +M+ G +P++ TF V AC S +++G
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 637
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 4 IIRYGLSNDQLLV-RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+ ++G D + V L++L G VF +I + +WN +I +L
Sbjct: 123 VYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK----GKEVHGLAVKAGFSRDMFVQS 118
AL + M+ P FT V+ AC ++L + + GK+VH ++ G + F+ +
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTAC-SNLPMPEGLMMGKQVHAYGLRKG-ELNSFIIN 240
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
TL+ +Y K G + + + R +V+W T++S L + L
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQL 283
>gi|302784506|ref|XP_002974025.1| hypothetical protein SELMODRAFT_34488 [Selaginella moellendorffii]
gi|300158357|gb|EFJ24980.1| hypothetical protein SELMODRAFT_34488 [Selaginella moellendorffii]
Length = 294
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALL----VFSQIRCPHVFTWNLMIRALTIDG 58
I+++G D L+ ++ + G D A +F + +WN MI A
Sbjct: 7 HIVKHGFDRDILVANSIIQMYGSCGCVDDARAESRALFDSMVDRSSVSWNAMISAYAQSA 66
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
AL L+ LM +G RPD+ TF + AC A++ G+ +H ++G R+ V +
Sbjct: 67 QFEAALHLFRLMNHDGCRPDRSTFVNALGACCELTALQFGRMIHAQIAESGLERECMVAT 126
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
L++L+ KCG+++G R +FD M R+++SWT MI+ + +G +
Sbjct: 127 ALINLHGKCGNLEGARAVFDLMEERTIISWTAMITAYSQNGQI 169
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG----RKMFDKMRVRSVVSWTTMIS 153
G+ VH VK GF RD+ V ++++ +Y CG VD R +FD M RS VSW MIS
Sbjct: 1 GRRVHAHIVKHGFDRDILVANSIIQMYGSCGCVDDARAESRALFDSMVDRSSVSWNAMIS 60
Query: 154 GLAASGDLDAA 164
A S +AA
Sbjct: 61 AYAQSAQFEAA 71
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I + GL D L+ KLL C + +AL +F P F N +IR+L++ +
Sbjct: 24 QICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLSLSQTP 83
Query: 61 LQALLLY-NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L +L + L PD FTF F +KA S + G ++H A + GF +FV +T
Sbjct: 84 LSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTT 143
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y +CGD R++FD+M +VV+W +++ GD++ A
Sbjct: 144 LISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGA 188
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ A VF ++ +W+ MI +G +A + ++ R ++ + V+
Sbjct: 214 GELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVL 273
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-RSV 145
AC + A E GK +HG KAGF V + L+D Y KCG+V R +F M V RS+
Sbjct: 274 SACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSI 333
Query: 146 VSWTTMISGLAASG 159
VSWT++I+GLA G
Sbjct: 334 VSWTSIIAGLAMHG 347
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
L+D S G A LVF + + +W +I L + G +A+ L++ M +G RP
Sbjct: 307 LIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRP 366
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKA----GFSRDMFVQSTLMDLYLKCGDVDGG 133
D TF ++ AC S +E+G GL K G + ++DLY + +
Sbjct: 367 DGITFISLLYACSHSGLVEEGC---GLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKA 423
Query: 134 RKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+ +M V + + W T++ + G+++ A
Sbjct: 424 YEFICEMPVSPNAIIWRTLLGACSIHGNIEMA 455
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ + +W ++ A + +AL + LM GF P++FTF V+ +C +
Sbjct: 429 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 488
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+E G++VHGL KAG + ++S L+D+Y KCG + K+FDK+ +VSWT +ISG
Sbjct: 489 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISG 548
Query: 155 LAASGDLDAA 164
A G ++ A
Sbjct: 549 YAQHGLVEDA 558
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ--IRCPHVFTWNLMIRALTIDGSSLQALL 65
G+ + L+ L+D+ S G A VF I C WN MI + G S +AL
Sbjct: 298 GIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALE 357
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF-VQSTLMDLY 124
LY M NG D +T+ V A AS +++ G+ VHG+ +K G + V + + D Y
Sbjct: 358 LYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 417
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG ++ RK+FD+M R +VSWTT+++ + S
Sbjct: 418 SKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQS 451
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ +VF+W +MI T G + M+ +G PDKF + +I++CI +
Sbjct: 123 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 182
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+E GK VH V GF+ +FV ++L+++Y K G ++ +F+ M + VSW MISG
Sbjct: 183 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISG 242
Query: 155 LAASG 159
++G
Sbjct: 243 CTSNG 247
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ G + + LL++ + G + + VF+ + + +WN MI T +G L+
Sbjct: 192 QIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLE 251
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A L+ M P+ +T V KA + + GKEV A + G ++ V + L+D
Sbjct: 252 AFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALID 311
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS--WTTMISGLAASG 159
+Y KCG + R +FD + V+ W MISG + SG
Sbjct: 312 MYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 350
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQ-STLMDLYLKCGDVDGGRKMFDKMRV 142
V++ C +I + K VHGL +K+ F +D+ V + +Y KC + +FD+M
Sbjct: 70 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 129
Query: 143 RSVVSWTTMISGLAASG 159
R+V SWT MI G G
Sbjct: 130 RNVFSWTVMIVGSTEHG 146
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL ++ + L+D+ + G A VF +I P + +W +I G AL
Sbjct: 501 KAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQ 560
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M +G + + T V+ AC +E+G + G +M + ++DL
Sbjct: 561 LFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLL 620
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLD 162
+ G +D + KM + + + W T++ G G+++
Sbjct: 621 GRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 659
>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
Length = 833
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 81/151 (53%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
LS+D ++ ++++ G+ D A +F ++ +WN MI A + G + QA L
Sbjct: 546 LSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSE 605
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M G PD+ TF ++ AC+A A+ GK +H + +G +D V + L++ Y KCG
Sbjct: 606 RMRREGVLPDRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCG 665
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++D +F + R VVSW +I+G A +G
Sbjct: 666 NLDTATSLFGALDYRDVVSWNGIIAGFAHNG 696
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 69/126 (54%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ D A+ VFS++R + +WN I A G L L M G PDK TF +
Sbjct: 150 RADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALN 209
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
ACI S ++ G+ +H L ++ G D+ + + L+ +Y +CG ++ R++F +M R+VVS
Sbjct: 210 ACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVS 269
Query: 148 WTTMIS 153
W M++
Sbjct: 270 WNAMVA 275
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D A VF ++R V +W MI A G QAL L+ M + P++ TF +++AC
Sbjct: 50 DEARKVFDRMRERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEAC 109
Query: 90 IASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
+ +E GK++H ++ D+ V + +M +Y KC D +F +MR R ++SW
Sbjct: 110 DSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISW 169
Query: 149 TTMISGLAASGD 160
I+ A SGD
Sbjct: 170 NNAIAANAESGD 181
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F + V +WN MI G S AL ++ M+ G R ++ TF ++ C +
Sbjct: 469 IFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAF 528
Query: 95 IEKGKEVHGLAVKAG--FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
+ +G+ +H + S D V + ++++Y KCG++D R +F+ R++ SW +MI
Sbjct: 529 LRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMI 588
Query: 153 SGLAASGDLDAA 164
S A G + A
Sbjct: 589 SAYALHGRAEQA 600
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
+++AC S A+E+G+ VHG + R +F + L+++Y +C +D RK+FD+MR R
Sbjct: 4 LMRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERD 63
Query: 145 VVSWTTMISGLAASG 159
VVSWT MIS A +G
Sbjct: 64 VVSWTAMISAYAQTG 78
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ G+ D +L L+ + G + A +F ++ +V +WN M+ + T++ +A
Sbjct: 227 VLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEA 286
Query: 64 LLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M+ P + +F V+ A A+ +G+ +H + + + V + L+
Sbjct: 287 IELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVT 346
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG V ++F M R +VSW MIS A SG
Sbjct: 347 MYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSG 383
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 22 LCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L + YG+ A VFS + + +WN MI A G + + + L++ M PD
Sbjct: 344 LVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPD 403
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG---------- 128
+ TF + AC ++ G+ VH L+V++GF + V + M LY C
Sbjct: 404 RITFLMALDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLM 463
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+V G +F+ M R V+SW TMI+G +GD
Sbjct: 464 EVVAG--IFESMAARDVISWNTMITGYVQAGD 493
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II GL D ++ L++ S G D A +F + V +WN +I +G + +
Sbjct: 641 RIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHARE 700
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL LM +G RPD TF ++ A A + G + +AV R + ++
Sbjct: 701 ALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMI 760
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSV-VSWTTMISGLAASGDLDAA 164
DL + G + MR VSW T++S GD + A
Sbjct: 761 DLLGRAGRIGDAEYFVSAMRDEDKEVSWMTLLSACEVHGDEERA 804
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 71/130 (54%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F I P +N + RA +AL L+ M+ G P++FT PFV+KAC + A
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ VHG+A+K GF +FV + L+ Y G + R+ FD+M R+VVSW +MI G
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120
Query: 155 LAASGDLDAA 164
A +GD A
Sbjct: 121 YAQAGDTREA 130
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%)
Query: 36 FSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95
F ++ +V +WN MI G + +A L+ M GF D+FT ++ AC +
Sbjct: 103 FDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNL 162
Query: 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
E G+ VH L + +G D+ + L+D+Y KCGD+ R+ F+ M ++SVVSWT+M+
Sbjct: 163 EFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQ 222
Query: 156 AASGDLDAA 164
G +DAA
Sbjct: 223 TKHGSVDAA 231
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85
+G D A F + + +WN MI G +AL LY M +G PD+ T V
Sbjct: 225 HGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPV 284
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + GK VH + D+ + ++L+D+Y KCG VD ++F +M R+V
Sbjct: 285 LSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNV 344
Query: 146 VSWTTMISGLAASGD-LDA 163
VSW +I GLA G LDA
Sbjct: 345 VSWNVIIGGLAMHGRALDA 363
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 5 IRYGLSN-DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
IR + N D L+ LLD+ + G+ D A+ +F ++ +V +WN++I L + G +L A
Sbjct: 304 IRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDA 363
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-----HGLAVKAGFSRDMFVQS 118
+ + M+ N PD TF ++ +C +E G+ H VK ++ +
Sbjct: 364 ITFFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVK----HEVEHYA 418
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDL 161
++DL + G ++ + +M ++ VV W ++ G++
Sbjct: 419 CMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNV 462
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 89/157 (56%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+ G +D ++ L+++ G + A VF +++ + +WN+MI +G +
Sbjct: 232 EIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHE 291
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL LY + GF+ K TF ++ AC + A+ +G+ VH ++ G ++ V + L++
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG ++ RK+F+ M+ R V+W+T+I A++G
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNG 388
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL + Q L L+ + + +G A +F ++ +WN +I A + G
Sbjct: 131 NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWS 190
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
AL ++ M C+ +P+ T+ VI + +G+++H V GF D+ V + L+
Sbjct: 191 GALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALI 249
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++Y KCG R++FDKM+ R +VSW MI +GD A
Sbjct: 250 NMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEA 292
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 22 LCSFYGKTDH---ALLVFSQI--RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76
L S YGK D A VF + R +V +WN MI A +G S +AL+LY M G
Sbjct: 48 LISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLG 107
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
D TF V+ AC +SLA +G+E+H +G + + L+ +Y + G V ++M
Sbjct: 108 TDHVTFVSVLGAC-SSLA--QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRM 164
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
F ++ R SW +I + SGD A
Sbjct: 165 FQSLQTRDETSWNAVILAHSQSGDWSGA 192
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 26 YGK-TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFP 83
YGK A VF ++ WN MI +G ++ A+ ++ M G +PD TF
Sbjct: 389 YGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFI 448
Query: 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
V++AC + + + K +H ++ ++ V +TL+++Y +CG ++ ++F + +
Sbjct: 449 AVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEK 508
Query: 144 SVVSWTTMISGLAASG 159
+VVSWT M++ + G
Sbjct: 509 TVVSWTAMVAAFSQYG 524
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+PD TF V+ +C + + +G+ +H + F RD V + L+ +Y KC + R
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63
Query: 136 MFDKM--RVRSVVSWTTMISGLAASG 159
+F+ M R R+VVSW MI+ A +G
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNG 89
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 14/168 (8%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I L ++ ++ L+++ + G + A +F+ + V +W M+ A + G +
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMF 115
AL L+ M G +PD T+ ++ C ++E+G E+HGLA A D F
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTA----DHF 584
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ ++DL + G + +++ + M V+W T ++ G L+
Sbjct: 585 --AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLE 630
>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
Length = 700
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 5/158 (3%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + +LV +L+ + G HAL VF + + F WN +I+ L G +AL ++
Sbjct: 78 GHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGRFSEALEMF 137
Query: 68 NLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLA---VKAGFSR-DMFVQSTLMD 122
M+ +G D FT+P VIKAC A A+ +G++V + + +G +R ++FVQ L+D
Sbjct: 138 WGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNARPNVFVQCALVD 197
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
++ KCG +D R +F+ M+VR + +WT MI G SG+
Sbjct: 198 MFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGN 235
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 75/141 (53%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G D A VF ++ + W MI G+ L+ + L+N M GF D
Sbjct: 195 LVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVD 254
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
VI AC + ++ G +HG AVK+G S D++V + L+D+Y KCG V+ +F
Sbjct: 255 SLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFW 314
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+ VVSW+++I G + +G
Sbjct: 315 STNSKDVVSWSSLIVGYSQNG 335
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR+GL + +V L+DL S G A +F + WN M+ ++G S A
Sbjct: 383 IRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAF 442
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ G +PD T V+ C + +GKE+H +K + V + L+D+Y
Sbjct: 443 CALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMY 502
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG ++ +++F M R+ V++ +IS D A
Sbjct: 503 CKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQA 542
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G S D + L+D+ G + A +F V +W+ +I + +G ++
Sbjct: 282 VKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSV 341
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ MI G P+ T ++ C++ L I GKE+H +++ G R FV S L+DL
Sbjct: 342 SLFCEMISLGINPNSSTLASILP-CLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDL 400
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y K G + +F + + W +M++G A +G D+A
Sbjct: 401 YSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSA 441
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+Y +++ + LLD+ G + A VF + + T+N++I + QA
Sbjct: 483 VIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQA 542
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
L ++LM +G PDK TF ++ C + I+KG + H + S + S ++D
Sbjct: 543 LSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVD 602
Query: 123 LYLKCGDVD 131
LY +CG +D
Sbjct: 603 LYSRCGKLD 611
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
++ + +H + G + + L+ Y K GDV ++FD M R+ +W +I GL
Sbjct: 65 QEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGL 124
Query: 156 AASGDLDAA 164
+G A
Sbjct: 125 VDAGRFSEA 133
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,379,487,062
Number of Sequences: 23463169
Number of extensions: 83228081
Number of successful extensions: 275800
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7351
Number of HSP's successfully gapped in prelim test: 1476
Number of HSP's that attempted gapping in prelim test: 223156
Number of HSP's gapped (non-prelim): 41829
length of query: 164
length of database: 8,064,228,071
effective HSP length: 125
effective length of query: 39
effective length of database: 9,426,299,242
effective search space: 367625670438
effective search space used: 367625670438
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 71 (32.0 bits)