BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031208
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5D|A Chain A, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y5D|B Chain B, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 34.3 bits (77), Expect = 0.030, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
D+ SF G D A + +R F L ++ SL + +L C PD
Sbjct: 229 FDVVSFTGSADTA----ATLRAHPAFVQRGA--RLNVEADSLNSAIL-----CADATPDT 277
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
F IK + + ++ G++ A++ F + ++ L L K + G D
Sbjct: 278 PAFDLFIKEVVREMTVKSGQK--ATAIRRAFVPEAALEPVLEALKAKLAKITVGNPRNDA 335
Query: 140 MRVRSVVS---WTTMISGLAA 157
+R+ S+VS + +++G+AA
Sbjct: 336 VRMGSLVSREQYENVLAGIAA 356
>pdb|2Y52|A Chain A, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y52|B Chain B, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 33.9 bits (76), Expect = 0.040, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
D+ SF G D A + +R F L ++ SL + +L C PD
Sbjct: 229 FDVVSFTGSADTA----ATLRAHPAFVQRGA--RLNVEADSLNSAIL-----CADATPDT 277
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
F IK + + ++ G++ A++ F + ++ L L K + G D
Sbjct: 278 PAFDLFIKEVVREMTVKSGQKC--TAIRRAFVPEAALEPVLEALKAKLAKITVGNPRNDA 335
Query: 140 MRVRSVVS---WTTMISGLAA 157
+R+ S+VS + +++G+AA
Sbjct: 336 VRMGSLVSREQYENVLAGIAA 356
>pdb|2Y51|A Chain A, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y51|B Chain B, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 33.9 bits (76), Expect = 0.040, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
D+ SF G D A + +R F L ++ SL + +L C PD
Sbjct: 229 FDVVSFTGSADTA----ATLRAHPAFVQRGA--RLNVEADSLNSAIL-----CADATPDT 277
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
F IK + + ++ G++ A++ F + ++ L L K + G D
Sbjct: 278 PAFDLFIKEVVREMTVKSGQKC--TAIRRAFVPEAALEPVLEALKAKLAKITVGNPRNDA 335
Query: 140 MRVRSVVS---WTTMISGLAA 157
+R+ S+VS + +++G+AA
Sbjct: 336 VRMGSLVSREQYENVLAGIAA 356
>pdb|2VRO|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
pdb|2VRO|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
Length = 532
Score = 33.9 bits (76), Expect = 0.040, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
D+ SF G D A + +R F L ++ SL + +L C PD
Sbjct: 227 FDVVSFTGSADTA----ATLRAHPAFVQRGA--RLNVEADSLNSAIL-----CADATPDT 275
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139
F IK + + ++ G++ A++ F + ++ L L K + G D
Sbjct: 276 PAFDLFIKEVVREMTVKSGQKC--TAIRRAFVPEAALEPVLEALKAKLAKITVGNPRNDA 333
Query: 140 MRVRSVVS---WTTMISGLAA 157
+R+ S+VS + +++G+AA
Sbjct: 334 VRMGSLVSREQYENVLAGIAA 354
>pdb|2Y53|A Chain A, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y53|B Chain B, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 33.9 bits (76), Expect = 0.040, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++QA L + ++C PD F IK + + ++ G++ A++ F + ++
Sbjct: 258 NVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKC--TAIRRAFVPEAALEPV 315
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVS---WTTMISGLAA 157
L L K + G D +R+ S+VS + +++G+AA
Sbjct: 316 LEALKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAA 356
>pdb|2KEB|A Chain A, Nmr Solution Structure Of The N-Terminal Domain Of The
Dna Polymerase Alpha P68 Subunit
Length = 101
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALL 34
+GL ++ L+ KL++LC YG+ + ++
Sbjct: 38 FGLDCEEALIEKLVELCVQYGQNEEGMV 65
>pdb|4E2I|2 Chain 2, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|3 Chain 3, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|6 Chain 6, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|U Chain U, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|W Chain W, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|5 Chain 5, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|7 Chain 7, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|9 Chain 9, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|1 Chain 1, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|4 Chain 4, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|8 Chain 8, The Complex Structure Of The Sv40 Helicase Large T
Antigen And P68 Subunit Of Dna Polymerase Alpha-Primase
Length = 78
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALL 34
+GL ++ L+ KL++LC YG+ + ++
Sbjct: 15 FGLDCEEALIEKLVELCVQYGQNEEGMV 42
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 50 MIRALTIDGSSLQALLLYNLMICNGFRP 77
MI T+DG + LLYN NGF P
Sbjct: 1223 MIENRTMDGKPVSLPLLYNFNPDNGFAP 1250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,498,351
Number of Sequences: 62578
Number of extensions: 155653
Number of successful extensions: 395
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 8
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)