BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031208
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
KII++ L+NDQLLVR+L+ + S +G+T +A LVF+Q++ P FTWNLMIR+L+++ +
Sbjct: 42 KIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPRE 101
Query: 63 ALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
ALLL+ LM I + + DKFTFPFVIKAC+AS +I G +VHGLA+KAGF D+F Q+TLM
Sbjct: 102 ALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLM 161
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
DLY KCG D GRK+FDKM RS+VSWTTM+ GL ++ LD+A
Sbjct: 162 DLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSA 204
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D A +VF+Q+ +V +W MI A + +A L+ M + +P++FT +++A
Sbjct: 202 DSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAS 261
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ G+ VH A K GF D F+ + L+D+Y KCG + RK+FD M+ +S+ +W
Sbjct: 262 TQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWN 321
Query: 150 TMISGLAASG 159
+MI+ L G
Sbjct: 322 SMITSLGVHG 331
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ G D L L+D+ S G A VF ++ + TWN MI +L + G +AL
Sbjct: 279 KNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALS 338
Query: 66 LYNLMICNG-FRPDKFTFPFVIKACIASLAIEKG 98
L+ M PD TF V+ AC + ++ G
Sbjct: 339 LFEEMEEEASVEPDAITFVGVLSACANTGNVKDG 372
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLC---SFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++I+ GL N + KL++ C + +A+ VF I+ P++ WN M R +
Sbjct: 55 QMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSD 114
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ AL LY MI G P+ +TFPFV+K+C S A ++G+++HG +K G D++V ++
Sbjct: 115 PVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 174
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y++ G ++ K+FDK R VVS+T +I G A+ G ++ A
Sbjct: 175 LISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENA 219
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A +F +I V +WN MI G+ +AL L+ M+ RPD+ T V+
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC S +IE G++VH GF ++ + + L+DLY KCG+++ +F+++ + V+
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 147 SWTTMISG 154
SW T+I G
Sbjct: 334 SWNTLIGG 341
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLL 66
+G ++ +V L+DL S G+ + A +F ++ V +WN +I T +ALLL
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLY 124
+ M+ +G P+ T ++ AC AI+ G+ +H K G + ++++L+D+Y
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCGD++ ++F+ + +S+ SW MI G A G DA+
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAS 454
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++N L L+D+ + G + A VF+ I + +WN MI + G + + L+
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV 101
+ M G +PD TF ++ AC S ++ G+ +
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+I+ + + + + +L+D C+ +T +A VF I CP V+ WN MIR + +
Sbjct: 29 MIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNP 88
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+AL+ Y M+ G+ PD FTFP+V+KAC I+ G VHG VK GF +M+V + L
Sbjct: 89 DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCL 148
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +Y+ CG+V+ G ++F+ + +VV+W ++ISG + A
Sbjct: 149 LHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73
+L L+D+ + G A +F + + +WN +I + +G + +AL ++ M+
Sbjct: 252 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 311
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G PDK TF VI+A + + G+ +H K GF +D + L+++Y K GD +
Sbjct: 312 GIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESA 371
Query: 134 RKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+K F+ + + ++WT +I GLA+ G + A
Sbjct: 372 KKAFEDLEKKDTIAWTVVIIGLASHGHGNEA 402
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G + + LL + G+ ++ L VF I +V W +I + A
Sbjct: 133 VVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR--------DMF 115
+ + M NG + ++ ++ AC I GK HG GF ++
Sbjct: 193 IEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVI 252
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ ++L+D+Y KCGD+ R +FD M R++VSW ++I+G + +GD + A
Sbjct: 253 LATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEA 301
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD---VDGGRKMFDKMRVRSVVSWTTMISGL 155
++HGL +K+ R++ S L+D C + + R +F+ + SV W +MI G
Sbjct: 23 NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 82
Query: 156 AASGDLDAA 164
+ S + D A
Sbjct: 83 SNSPNPDKA 91
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 4/159 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRC-PHVFTWNLMIRALTID 57
+ + + GL ND + KL+ G + A VF F +N +IR
Sbjct: 53 RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
G +A+LL+ M+ +G PDK+TFPF + AC S A G ++HGL VK G+++D+FVQ
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQ 172
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
++L+ Y +CG++D RK+FD+M R+VVSWT+MI G A
Sbjct: 173 NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYA 211
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 84/157 (53%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ + L+V L+D+ D A +F + ++ N M G + +AL ++
Sbjct: 266 GIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF 325
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
NLM+ +G RPD+ + I +C I GK HG ++ GF + + L+D+Y+KC
Sbjct: 326 NLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKC 385
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D ++FD+M ++VV+W ++++G +G++DAA
Sbjct: 386 HRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ G + D + L+ + G+ D A VF ++ +V +W MI + A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 64 LLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M+ + P+ T VI AC +E G++V+ +G + + S L+D
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
Query: 123 LYLKCGDVDGGRKMFDK 139
+Y+KC +D +++FD+
Sbjct: 280 MYMKCNAIDVAKRLFDE 296
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY-NLMICNGFRPDKFTFPFV 85
G+ D A F + ++ +WN +I L +A+ ++ ++ G D T +
Sbjct: 417 GEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSI 476
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
AC A++ K ++ K G D+ + +TL+D++ +CGD + +F+ + R V
Sbjct: 477 ASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDV 536
Query: 146 VSWT 149
+WT
Sbjct: 537 SAWT 540
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I + G+ D L L+D+ S G + A+ +F+ + V W I A+ + G++ +A
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
+ L++ MI G +PD F + AC +++GKE+ +K G S + ++D
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G ++ ++ + M + + V W ++++ G+++ A
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMIC 72
L K+L L S + ++A VF I F WN +IRA D S +A +LY M+
Sbjct: 84 FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 143
Query: 73 NG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131
G PDK TFPFV+KAC +GK+VH VK GF D++V + L+ LY CG +D
Sbjct: 144 RGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLD 203
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RK+FD+M RS+VSW +MI L G+ D+A
Sbjct: 204 LARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 236
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+I+++G D + L+ L G D A VF ++ + +WN MI AL G
Sbjct: 176 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 235
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK---AGFSRDMFVQST 119
AL L+ M F PD +T V+ AC ++ G H ++ + D+ V+++
Sbjct: 236 ALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 294
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+++Y KCG + ++F M+ R + SW MI G A G + A
Sbjct: 295 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 339
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 14/157 (8%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D L+ L+++ G A VF ++ + +WN MI G + +A+ ++ M+
Sbjct: 288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 347
Query: 72 --CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL------MDL 123
RP+ TF ++ AC + KG++ + V RD ++ L +DL
Sbjct: 348 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMV-----RDYCIEPALEHYGCIVDL 402
Query: 124 YLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASG 159
+ G + M M ++ V W +++ G
Sbjct: 403 IARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKG 439
>sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620
OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
Length = 836
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GF 75
+L++ S + + D + ++F +R P V WN MIR T G +AL + M G
Sbjct: 37 NQLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGI 96
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
PDK++F F +KAC S+ +KG +H L + G D+++ + L+++Y K D+ R+
Sbjct: 97 DPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQ 156
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FDKM V+ VV+W TM+SGLA +G AA
Sbjct: 157 VFDKMHVKDVVTWNTMVSGLAQNGCSSAA 185
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGS 59
+II++G ++ + L+++ + A+++F +C +WN+M+ + G
Sbjct: 527 QIIKHGFDSECHVAHALINMFTKCDALAAAIVLFD--KCGFEKSTVSWNIMMNGYLLHGQ 584
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
+ +A+ + M F+P+ TF +++A A+ G VH ++ GF V ++
Sbjct: 585 AEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNS 644
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+D+Y KCG ++ K F ++ + +VSW TM+S AA G
Sbjct: 645 LVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHG 684
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL D + L+ + S G+ + A +F I V +W+ MI + G +A+
Sbjct: 327 VQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAI 386
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ +P+ T V++ C A GK +H A+KA ++ + ++ +Y
Sbjct: 387 SLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMY 446
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
KCG K F+++ ++ V++ + G GD + A
Sbjct: 447 AKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKA 486
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF ++ +W M+ A +G + L L++LM R +K ++A
Sbjct: 256 VFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGD 315
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ KG +H AV+ G D+ V ++LM +Y KCG+++ ++F + R VVSW+ MI+
Sbjct: 316 LVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIAS 375
Query: 155 LAASGDLDAA 164
+G D A
Sbjct: 376 YEQAGQHDEA 385
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I GL +D + L+++ A VF ++ V TWN M+ L +G S A
Sbjct: 126 IAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAA 185
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV-QSTLMD 122
LLL++ M D + +I A + + +HGL +K GF +F S L+D
Sbjct: 186 LLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGF---IFAFSSGLID 242
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y C D+ +F+++ + SW TM++ A +G
Sbjct: 243 MYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNG 279
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G+ AL F ++ +N + + T G + +A +Y M +G PD T ++
Sbjct: 450 GRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGML 509
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-RSV 145
+ C +G V+G +K GF + V L++++ KC + +FDK +S
Sbjct: 510 QTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKST 569
Query: 146 VSWTTMISGLAASGDLDAA 164
VSW M++G G + A
Sbjct: 570 VSWNIMMNGYLLHGQAEEA 588
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + + L+D+ + G + + F +I ++ +WN M+ A G + A
Sbjct: 630 LIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCA 689
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L+ M N +PD +F V+ AC + +E+GK + + + ++ + ++D
Sbjct: 690 VSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVD 749
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMIS 153
L K G +M +MRV++ V W +++
Sbjct: 750 LLGKAGLFGEAVEMMRRMRVKTSVGVWGALLN 781
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II +GLS +V K++D C D+A +F+Q+ P+VF +N +IRA T +
Sbjct: 33 IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92
Query: 64 LLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ +Y ++ F PD+FTFPF+ K+C + + GK+VHG K G + ++ L+D
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y+K D+ K+FD+M R V+SW +++SG A G + A
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKA 194
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
+ +W MI T G ++A+ + M G PD+ + V+ +C ++E GK +H
Sbjct: 206 IVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHL 265
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
A + GF + V + L+++Y KCG + ++F +M + V+SW+TMISG A G+
Sbjct: 266 YAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHG 325
Query: 164 A 164
A
Sbjct: 326 A 326
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R G + L+++ S G A+ +F Q+ V +W+ MI G++ A+
Sbjct: 269 RRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIE 328
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDL 123
+N M +P+ TF ++ AC ++G + ++ + + ++ L+D+
Sbjct: 329 TFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM-MRQDYQIEPKIEHYGCLIDV 387
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ G ++ ++ M ++ W +++S G+LD A
Sbjct: 388 LARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVA 429
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ G D L KL+ + S G D+A VF + R ++ WN + RALT+ G
Sbjct: 101 RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKAGFSRDMFVQ 117
+ L LY M G D+FT+ +V+KAC+AS + KGKE+H + G+S +++
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM 220
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+TL+D+Y + G VD +F M VR+VVSW+ MI+ A +G
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNG 262
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G S+ ++ L+D+ + +G D+A VF + +V +W+ MI +G + +A
Sbjct: 208 LTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEA 267
Query: 64 LLLYNLMI--CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
L + M+ P+ T V++AC + A+E+GK +HG ++ G + V S L+
Sbjct: 268 LRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALV 327
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y +CG ++ G+++FD+M R VVSW ++IS G
Sbjct: 328 TMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 365
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL + ++ L+ + GK + VF ++ V +WN +I + + G +A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ ++ M+ NG P TF V+ AC +E+GK + + G + + ++D
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + +D KM MR W +++ G+++ A
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELA 473
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +I++L +G QA+ + + P + T+ +I C ++ VH +
Sbjct: 50 NQLIQSLCKEGKLKQAIRV----LSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G +D F+ + L+ +Y G VD RK+FDK R R++ W + L +G
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
ND L R L D AL +F ++ F WN+MI+ T G ++A+ Y+ M
Sbjct: 63 NDPALTRALRGFADSRLMED-ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRM 121
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ G + D FT+PFVIK+ ++E+GK++H + +K GF D++V ++L+ LY+K G
Sbjct: 122 VFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCA 181
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
K+F++M R +VSW +MISG A GD
Sbjct: 182 WDAEKVFEEMPERDIVSWNSMISGYLALGD 211
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 83/155 (53%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G +L L+D+ G+ A ++F ++ +V +WN +I A +G + AL
Sbjct: 357 MRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSAL 416
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ + + PD T ++ A SL++ +G+E+H VK+ + + + ++L+ +Y
Sbjct: 417 ELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMY 476
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
CGD++ RK F+ + ++ VVSW ++I A G
Sbjct: 477 AMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHG 511
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
+ D +++ +LD+ S YG+ +A +F+ + ++ WN+MI +G A L +
Sbjct: 264 TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQK 323
Query: 70 MI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
M NG +PD T ++ A AI +G+ +HG A++ GF M +++ L+D+Y +CG
Sbjct: 324 MSEQNGLQPDVITSINLLPAS----AILEGRTIHGYAMRRGFLPHMVLETALIDMYGECG 379
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ +FD+M ++V+SW ++I+ +G
Sbjct: 380 QLKSAEVIFDRMAEKNVISWNSIIAAYVQNG 410
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G +D + L+ L G A VF ++ + +WN MI G +
Sbjct: 156 VIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSS 215
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMD 122
L+L+ M+ GF+PD+F+ + AC + + GKE+H AV++ D+ V ++++D
Sbjct: 216 LMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILD 275
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G+V ++F+ M R++V+W MI A +G + A
Sbjct: 276 MYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDA 317
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I++ ++ +++ L+ + + G + A F+ I V +WN +I A + G +
Sbjct: 457 IVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRIS 516
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ L++ MI + P+K TF ++ AC S +++G E + + G + ++D
Sbjct: 517 VWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLD 576
Query: 123 LYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLAASGDLDAA 164
L + G+ ++ ++M V + W ++++ D+ A
Sbjct: 577 LIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIA 619
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Query: 19 LLDLCSFYGKTDHALL---VFSQIRCPHV--FTWNLMIRALTIDGSSLQALLLYNLMICN 73
L++L Y + L VF +I P + W+LMIRA + + +AL LY M+ +
Sbjct: 38 LVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNS 97
Query: 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133
G RP K+T+PFV+KAC AI+ GK +H + F+ DM+V + L+D Y KCG+++
Sbjct: 98 GVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMA 157
Query: 134 RKMFDKMRVRSVVSWTTMISGLA 156
K+FD+M R +V+W MISG +
Sbjct: 158 IKVFDEMPKRDMVAWNAMISGFS 180
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G D + ++ + YG A FS+I V ++N +I ++ ++
Sbjct: 335 VKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESF 394
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L++ M +G RPD T V+ AC A+ G HG V G++ + + + LMD+Y
Sbjct: 395 RLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMY 454
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
KCG +D +++FD M R +VSW TM+ G G
Sbjct: 455 TKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY- 67
+ D + L+D + G+ + A+ VF ++ + WN MI ++ + L+
Sbjct: 134 FATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFL 193
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
++ +G P+ T + A + A+ +GK VHG + GFS D+ V++ ++D+Y K
Sbjct: 194 DMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKS 253
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ R++FD ++ V+W+ MI G
Sbjct: 254 KCIIYARRVFDLDFKKNEVTWSAMIGG 280
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ +G + + + L+D+ + GK D A VF + + +WN M+ I G +AL
Sbjct: 436 VVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEAL 495
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMD 122
L+N M G PD+ T ++ AC S +++GK++ + F+ + + + D
Sbjct: 496 SLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTD 555
Query: 123 LYLKCGDVDGGRKMFDKM 140
L + G +D +KM
Sbjct: 556 LLARAGYLDEAYDFVNKM 573
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
R G SND ++ +LD+ Y K+ +A VF + TW+ MI + +
Sbjct: 233 RMGFSNDLVVKTGILDV---YAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKE 289
Query: 63 ALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A ++ M+ N ++ C + G+ VH AVKAGF D+ VQ+T+
Sbjct: 290 AGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTI 349
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+ Y K G + + F ++ ++ V+S+ ++I+G
Sbjct: 350 ISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITG 383
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G+ +D + L+D+ + + + + VFS++ C +WN ++ +G +A
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M+ +P F VI AC + GK++HG ++ GF ++F+ S L+D+
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDM 387
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG++ RK+FD+M V VSWT +I G A G
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D VF + V ++N +I G AL + M +PD FT V+
Sbjct: 193 DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIF 252
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+ + KGKE+HG ++ G D+++ S+L+D+Y K ++ ++F ++ R +SW
Sbjct: 253 SEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWN 312
Query: 150 TMISGLAASGDLDAA 164
++++G +G + A
Sbjct: 313 SLVAGYVQNGRYNEA 327
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 36/160 (22%)
Query: 36 FSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95
F ++ P V W +IR T +AL + M +G PD FP V+K+C + +
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK-----------------------CGD--- 129
G+ VHG V+ G D++ + LM++Y K GD
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 130 ----------VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D R++F+ M + VVS+ T+I+G A SG
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSG 221
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G ++ + L+D+ S G A +F ++ +W +I + G +A
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ M G +P++ F V+ AC L E + + G ++++ + + D
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 488
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
L + G ++ KM V S W+T++S + +L+ A
Sbjct: 489 LLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELA 531
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
GL D + KL+ L F+G T A LVF QI P + W +M+R ++ S++ + LY
Sbjct: 71 GLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLY 130
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+L++ +GFR D F +KAC ++ GK++H VK S D V + L+D+Y KC
Sbjct: 131 DLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKC 189
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISG 154
G++ K+F+ + +R+VV WT+MI+G
Sbjct: 190 GEIKSAHKVFNDITLRNVVCWTSMIAG 216
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 83/155 (53%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S D +++ LLD+ + G+ A VF+ I +V W MI + + L+L+N
Sbjct: 173 SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNR 232
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M N +++T+ +I AC A+ +GK HG VK+G + ++L+D+Y+KCGD
Sbjct: 233 MRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGD 292
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ R++F++ +V WT MI G +G ++ A
Sbjct: 293 ISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 327
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF + WN +I + +GS +AL L++ M P+ T + AC +
Sbjct: 396 AKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACAS 455
Query: 92 SLAIEKGKEVHGLAVKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
++ G +H +VK GF S + V + L+D Y KCGD R +FD + ++ ++W+
Sbjct: 456 LGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWS 515
Query: 150 TMISGLAASGD 160
MI G GD
Sbjct: 516 AMIGGYGKQGD 526
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G+ LV LLD+ G +A VF++ + W MI T +GS +A
Sbjct: 268 LVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 327
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +P+ T V+ C +E G+ VHGL++K G D V + L+ +
Sbjct: 328 LSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANALVHM 386
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KC + +F+ + +V+W ++ISG + +G + A
Sbjct: 387 YAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEA 427
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD + G A L+F I + TW+ MI G ++ +L L+ M+ +P+
Sbjct: 486 LLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPN 545
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ TF ++ AC + + +GK+ K F+ + ++D+ + G+++ +
Sbjct: 546 ESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDII 605
Query: 138 DKMRVRSVV 146
+KM ++ V
Sbjct: 606 EKMPIQPDV 614
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTI----DGS 59
+I GL+ D L V K ++ CS G +A VF+ CP+ + N MIRAL++ +
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAH 97
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
S+ A+ +Y + +PD FTFPFV+K + + G+++HG V GF + V +
Sbjct: 98 SI-AITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTG 156
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+ +Y CG + RKMFD+M V+ V W +++G G++D A
Sbjct: 157 LIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEA 201
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 12 DQLLVRKLL---DLCSFYGKT---DHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQA 63
D++LV+ + L + YGK D A + + C + +W +I G + +A
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ ++ M+ PD+ T V+ AC ++E G+ + G +R + + + ++D+
Sbjct: 235 IEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDM 294
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y K G++ +F+ + R+VV+WTT+I+GLA G
Sbjct: 295 YAKSGNITKALDVFECVNERNVVTWTTIIAGLATHG 330
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G++ L ++D+ + G AL VF + +V TW +I L G +AL ++
Sbjct: 280 GMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMF 339
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLK 126
N M+ G RP+ TF ++ AC ++ GK + + + K G ++ ++DL +
Sbjct: 340 NRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGR 399
Query: 127 CGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
G + ++ M ++ + W ++++ DL+
Sbjct: 400 AGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLE 436
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 85/151 (56%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L N + R L+ C G+ +A VF ++ V +N MI + + + L LY+
Sbjct: 46 LLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYD 105
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128
MI +PD TF IKAC++ L +EKG+ V AV G+ D+FV S++++LY+KCG
Sbjct: 106 QMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCG 165
Query: 129 DVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+D +F KM R V+ WTTM++G A +G
Sbjct: 166 KMDEAEVLFGKMAKRDVICWTTMVTGFAQAG 196
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
K + +G ND + +L+L GK D A ++F ++ V W M+ G SL+
Sbjct: 141 KAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLK 200
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ Y M GF D+ +++A + G+ VHG + G ++ V+++L+D
Sbjct: 201 AVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVD 260
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G ++ ++F +M ++ VSW ++ISG A +G
Sbjct: 261 MYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNG 297
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R GL + ++ L+D+ + G + A VFS++ +W +I +G + +A
Sbjct: 245 RTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFE 304
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
M GF+PD T V+ AC +++ G+ VH +K D + LMD+Y
Sbjct: 305 AVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHV-LDRVTATALMDMYS 363
Query: 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG + R++F+ + + +V W TMIS G+
Sbjct: 364 KCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGN 398
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D++ L+D+ S G + +F + + WN MI I G+ + + L+ M
Sbjct: 351 DRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMT 410
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV---KAGFSRDMFVQSTLMDLYLKCG 128
+ PD TF ++ A S +E+G+ + + K S +V L+DL + G
Sbjct: 411 ESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYV--CLIDLLARAG 468
Query: 129 DVDGGRKMFDKMRVRSVVS-WTTMISG 154
V+ M + ++ + + W ++SG
Sbjct: 469 RVEEALDMINSEKLDNALPIWVALLSG 495
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 31 HALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFVIKA 88
+A VFS+I P +VF WN +IR G+S+ A LY M +G PD T+PF+IKA
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
+ G+ +H + +++GF ++VQ++L+ LY CGDV K+FDKM + +V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 149 TTMISGLAASGDLDAA 164
++I+G A +G + A
Sbjct: 191 NSVINGFAENGKPEEA 206
Score = 99.4 bits (246), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 83/156 (53%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G + + LL L + G A VF ++ + WN +I +G +A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L LY M G +PD FT ++ AC A+ GK VH +K G +R++ + L+DL
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 266
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG V+ + +FD+M ++ VSWT++I GLA +G
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ GL+ + LLDL + G+ + A +F ++ + +W +I L ++G +A
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 64 LLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STL 120
+ L+ M G P + TF ++ AC +++G E + ++ + + ++ +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE-YFRRMREEYKIEPRIEHFGCM 366
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
+DL + G V + M ++ +VV W T++ GD D A
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 103 bits (258), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSF--YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+IR G +D KL + + + ++A VF +I P+ F WN +IRA +
Sbjct: 53 MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112
Query: 62 QALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++ + M+ P+K+TFPF+IKA ++ G+ +HG+AVK+ D+FV ++L
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSL 172
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ Y CGD+D K+F ++ + VVSW +MI+G G D A
Sbjct: 173 IHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFY-GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++ + +D + L+ C F G D A VF+ I+ V +WN MI GS +A
Sbjct: 158 VKSAVGSDVFVANSLIH-CYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M + T V+ AC +E G++V + + ++ + + ++D+
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDM 276
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ +++FD M + V+WTTM+ G A S D +AA
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102
+ WN +I A +G +AL++++ L + + ++ T + AC A+E G+ +H
Sbjct: 329 IVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIH 388
Query: 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + V S L+ +Y KCGD++ R++F+ + R V W+ MI GLA G
Sbjct: 389 SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++G+ + + L+ + S G + + VF+ + VF W+ MI L + G +A
Sbjct: 391 IKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEA 450
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMD 122
+ ++ M +P+ TF V AC + +++ + + H + G + + ++D
Sbjct: 451 VDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVD 510
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
+ + G ++ K + M + S W ++ +L+ A
Sbjct: 511 VLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLA 553
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 4 IIRYGLSNDQLLVRKLLDLC----SFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTI 56
++R L +D + +LL LC +F T+ +A +FSQI+ P++F +NL+IR +
Sbjct: 35 LLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFST 94
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
+A Y M+ + PD TFPF+IKA + G++ H V+ GF D++V
Sbjct: 95 GAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYV 154
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++L+ +Y CG + ++F +M R VVSWT+M++G G ++ A
Sbjct: 155 ENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENA 202
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 72/138 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G ++A +F ++ ++FTW++MI + +A+ L+ M G ++ VI
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
+C A+E G+ + VK+ + ++ + + L+D++ +CGD++ +F+ + +
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSL 316
Query: 147 SWTTMISGLAASGDLDAA 164
SW+++I GLA G A
Sbjct: 317 SWSSIIKGLAVHGHAHKA 334
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ +++ ++ + +L L+D+ G + A+ VF + +W+ +I+ L + G +
Sbjct: 273 EYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAH 332
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTL 120
+A+ ++ MI GF P TF V+ AC +EKG E++ + G + +
Sbjct: 333 KAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCI 392
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR 143
+D+ + G + KM V+
Sbjct: 393 VDMLGRAGKLAEAENFILKMHVK 415
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 52/207 (25%)
Query: 5 IRYGLSNDQLLVRKLLDLCS----FYGKTDHALLVFSQIRCPHVFTWNLMIRALTI--DG 58
I+ G D L ++L C+ + D+A +F+Q+ + F+WN +IR + +
Sbjct: 47 IKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDED 106
Query: 59 SSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+L A+ L+ M+ + F P++FTFP V+KAC + I++GK++HGLA+K GF D FV
Sbjct: 107 KALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVM 166
Query: 118 STLMDLYLKC---------------------------------------------GDVDG 132
S L+ +Y+ C GD
Sbjct: 167 SNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKA 226
Query: 133 GRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FDKMR RSVVSW TMISG + +G
Sbjct: 227 ARMLFDKMRQRSVVSWNTMISGYSLNG 253
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A ++F ++R V +WN MI +++G A+ ++ M RP+ T V+
Sbjct: 222 GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVL 281
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
A ++E G+ +H A +G D + S L+D+Y KCG ++ +F+++ +V+
Sbjct: 282 PAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVI 341
Query: 147 SWTTMISGLAASG 159
+W+ MI+G A G
Sbjct: 342 TWSAMINGFAIHG 354
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G+ D +L L+D+ S G + A+ VF ++ +V TW+ MI I G + A+ +
Sbjct: 304 GIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 363
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLK 126
M G RP + ++ AC +E+G+ V G + ++DL +
Sbjct: 364 CKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR 423
Query: 127 CGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
G +D + M ++ V W ++ G+++
Sbjct: 424 SGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVE 460
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+++ GL +D KL+ + + +A + ++I P+ FT N +IRA +
Sbjct: 62 MLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTP 121
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
AL ++ M+ PDK++F FV+KAC A E+G+++HGL +K+G D+FV++TL
Sbjct: 122 EVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTL 181
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++Y + G + RK+ D+M VR VSW +++S G +D A
Sbjct: 182 VNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEA 225
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFV 85
G A VF + V +WN M+ A G + L ++N M+ + +PD FT V
Sbjct: 251 GLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSV 310
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + ++ +G+ VH K G + F+ + L+D+Y KCG +D ++F R V
Sbjct: 311 LSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370
Query: 146 VSWTTMISGLAASG 159
+W ++IS L+ G
Sbjct: 371 STWNSIISDLSVHG 384
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I ++G+ + L L+D+ S GK D AL VF V TWN +I L++ G A
Sbjct: 330 IDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDA 389
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKAC 89
L +++ M+ GF+P+ TF V+ AC
Sbjct: 390 LEIFSEMVYEGFKPNGITFIGVLSAC 415
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQ 62
+I GL + KL+D S + + +L VF ++ +V+ WN +IRA + +G +
Sbjct: 30 VISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPE 89
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL Y + + PDK+TFP VIKAC E G V+ + GF D+FV + L+D
Sbjct: 90 ALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVD 149
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y + G + R++FD+M VR +VSW ++ISG ++ G + A
Sbjct: 150 MYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G+ D + L+D+ + G+ +L +FS + TWN +I A G L
Sbjct: 435 IKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGL 494
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ M + PD TF + C ASLA ++ GKE+H ++ G+ ++ + + L+++
Sbjct: 495 QVTTQMRKSEVVPDMATFLVTLPMC-ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ ++F++M R VV+WT MI G+ + A
Sbjct: 554 YSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKA 594
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G A VF+ + C +WN +I G ++A+ L+ +M+ + D
Sbjct: 348 LIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQAD 407
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T+ +I ++ GK +H +K+G D+ V + L+D+Y KCG+V K+F
Sbjct: 408 HITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFS 467
Query: 139 KMRVRSVVSWTTMISGLAASGDL 161
M V+W T+IS GD
Sbjct: 468 SMGTGDTVTWNTVISACVRFGDF 490
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++I+ G +D + L+D+ S G A VF ++ + +WN +I + G
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
+AL +Y+ + + PD FT V+ A L +++G+ +HG A+K+G + + V + L+
Sbjct: 190 EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
+YLK R++FD+M VR VS+ TMI G
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICG 282
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Query: 25 FYGKTDHALLVFSQIRCPHVFTWNLMI---RALTIDGSSLQALLLYNLMICNGFRPDKFT 81
F TD A VF ++ ++N MI L + S++ + L NL + F+PD T
Sbjct: 255 FRRPTD-ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVR-MFLENL---DQFKPDLLT 309
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
V++AC + K ++ +KAGF + V++ L+D+Y KCGD+ R +F+ M
Sbjct: 310 VSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSME 369
Query: 142 VRSVVSWTTMISGLAASGDLDAA 164
+ VSW ++ISG SGDL A
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEA 392
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+G ++ + L+++ S G +++ VF ++ V TW MI A + G +A
Sbjct: 535 LLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKA 594
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLM 121
L + M +G PD F +I AC S +++G +K + D ++ + ++
Sbjct: 595 LETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFE-KMKTHYKIDPMIEHYACVV 653
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
DL + + + M ++ S W +++ SGD++ A
Sbjct: 654 DLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETA 697
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + PF+ +A +S + + + +H L + G F L+D Y + +F
Sbjct: 4 RVSSPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFR 63
Query: 139 KMR-VRSVVSWTTMISGLAASG 159
++ ++V W ++I + +G
Sbjct: 64 RVSPAKNVYLWNSIIRAFSKNG 85
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 5/158 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ + + L+ K ++L F +++ +FS P+ +++N MIR LT + +
Sbjct: 59 QMLLHSVEKPNFLIPKAVELGDF----NYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHE 114
Query: 63 ALL-LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A L LY M +G +PDKFT+ FV AC I G+ VH K G RD+ + +L+
Sbjct: 115 AALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLI 174
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V RK+FD++ R VSW +MISG + +G
Sbjct: 175 MMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAG 212
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L S YGK D A VF+Q+ W MI + +G S +A L+ M G PD
Sbjct: 274 LISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPD 333
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V+ AC + A+E GK++ A + +++V + L+D+Y KCG V+ ++F+
Sbjct: 334 AGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFE 393
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M V++ +W MI+ A G A
Sbjct: 394 AMPVKNEATWNAMITAYAHQGHAKEA 419
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL D + L+ + + G+ +A +F +I +WN MI + G + A
Sbjct: 158 LFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDA 217
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M GF PD+ T ++ AC + G+ + +A+ F+ S L+ +
Sbjct: 218 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISM 277
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD+D R++F++M + V+WT MI+ + +G A
Sbjct: 278 YGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEA 318
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L ++ + L+D+ G+ + AL VF + + TWN MI A G + +ALLL++
Sbjct: 365 LQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFD 424
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M P TF V+ AC+ + + +G + H ++ G + + ++DL +
Sbjct: 425 RM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRA 481
Query: 128 GDVDGGRKMFDK 139
G +D + ++
Sbjct: 482 GMLDEAWEFMER 493
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 2/160 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++ GL L+ KL+ S +G A VF + P +F WN +IR + +
Sbjct: 43 RLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQD 102
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
ALL+Y+ M PD FTFP ++KAC ++ G+ VH + GF D+FVQ+ L+
Sbjct: 103 ALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIA 162
Query: 123 LYLKCGDVDGGRKMFDKMRV--RSVVSWTTMISGLAASGD 160
LY KC + R +F+ + + R++VSWT ++S A +G+
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 85/156 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ GL + L+ L + + G+ A ++F +++ P++ WN MI +G + +A
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +++ MI RPD + I AC ++E+ + ++ ++ + D+F+ S L+D+
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ KCG V+G R +FD+ R VV W+ MI G G
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHG 403
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSS 60
++ R G D + L+ L + + A VF + P + +W ++ A +G
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
++AL +++ M +PD V+ A +++G+ +H VK G + + +L
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V + +FDKM+ +++ W MISG A +G
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R +D + L+D+ + G + A LVF + V W+ MI + G + +A+
Sbjct: 351 RSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAIS 410
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125
LY M G P+ TF ++ AC S + +G + + ++DL
Sbjct: 411 LYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLG 470
Query: 126 KCGDVDGGRKMFDKMRVRSVVS-WTTMISG 154
+ G +D ++ M V+ V+ W ++S
Sbjct: 471 RAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 88/157 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D ++ L+ + + + +++L VF ++ V +WN +I G + +A
Sbjct: 133 VVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M +GF P+ + I AC L +E+GKE+H VK GF D +V S L+D+
Sbjct: 193 LELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDM 252
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y KC ++ R++F KM +S+V+W +MI G A GD
Sbjct: 253 YGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGD 289
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR ++ D + L+DL G+ + A VFS+ + +WN+MI + G+ +A
Sbjct: 335 VIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKA 394
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ +Y+ M+ G +PD TF V+ AC A+EKGK++H ++ D + S L+D+
Sbjct: 395 VEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDM 454
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+ ++F+ + + VVSWT MIS + G A
Sbjct: 455 YSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREA 495
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH---ALLVFSQIRCPHVFTWNLMIRALTIDG 58
+K ++ G D+ + L+D+ YGK D A VF ++ + WN MI+ G
Sbjct: 232 RKCVKKGFELDEYVNSALVDM---YGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKG 288
Query: 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
S + + N MI G RP + T ++ AC S + GK +HG +++ + D++V
Sbjct: 289 DSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNC 348
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
+L+DLY KCG+ + +F K + SW MIS + G+
Sbjct: 349 SLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGN 390
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 10/169 (5%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDH--ALLVFSQ--IRCPHVFTWNLMIRALTID 57
Q+I+ GL D +L + L+++ ++ DH A VF IR V+ WN ++ + +
Sbjct: 28 QRILTLGLRRDVVLCKSLINV--YFTCKDHCSARHVFENFDIR-SDVYIWNSLMSGYSKN 84
Query: 58 GSSLQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIE-KGKEVHGLAVKAGFSRDMF 115
L ++ L+ C+ PD FTFP VIKA +L E G+ +H L VK+G+ D+
Sbjct: 85 SMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA-YGALGREFLGRMIHTLVVKSGYVCDVV 143
Query: 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
V S+L+ +Y K + ++FD+M R V SW T+IS SG+ + A
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKA 192
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
L D+LL+ LLD+ S G A +F+ I V +W +MI A G +AL ++
Sbjct: 441 LETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFD 500
Query: 69 LMICNGFRPDKFTFPFVIKACIASLAIEKG 98
M G +PD T V+ AC + I++G
Sbjct: 501 EMQKFGLKPDGVTLLAVLSACGHAGLIDEG 530
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 85 VIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143
+++ C S ++ + K VH + G RD+ + +L+++Y C D R +F+ +R
Sbjct: 9 LLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIR 68
Query: 144 S-VVSWTTMISGLAASG 159
S V W +++SG + +
Sbjct: 69 SDVYIWNSLMSGYSKNS 85
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PHVFTWNLMIRALTIDGSS 60
++GL D + + +L C G D L FSQ+R P + ++ MI L G
Sbjct: 504 KFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRL 563
Query: 61 LQALLLYNLMICNGFRPDKFT-FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L+A Y ++ D + AC L G + L V+ + D
Sbjct: 564 LEA---YEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVE-NYPDDASTYMV 619
Query: 120 LMDLYLKCGDVDGGRKMFDKM-----RVRSVVSWTTM 151
L +LY D R++ KM R + SW M
Sbjct: 620 LFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEM 656
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 78/130 (60%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
++A +F I P F +N MIR S +AL YN M+ G PD FT+P ++KAC
Sbjct: 83 NYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKAC 142
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWT 149
+I +GK++HG K G D+FVQ++L+++Y +CG+++ +F+K+ ++ SW+
Sbjct: 143 TRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWS 202
Query: 150 TMISGLAASG 159
+M+S A G
Sbjct: 203 SMVSARAGMG 212
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 1/163 (0%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++ + GL D + L+++ G+ + + VF ++ +W+ M+ A G +
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216
Query: 63 ALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
LLL+ M + ++ + AC + A+ G +HG ++ ++ VQ++L+
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
D+Y+KCG +D +F KM R+ ++++ MISGLA G+ ++A
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESA 319
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ G D AL +F ++ + T++ MI L + G AL +++ MI G PD
Sbjct: 275 LVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD 334
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ-STLMDLYLKCGDVDGGRKMF 137
+ V+ AC S +++G+ V +K G L+DL + G ++ +
Sbjct: 335 HVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI 394
Query: 138 DKMRV-RSVVSWTTMIS 153
+ + ++ V W T +S
Sbjct: 395 QSIPIEKNDVIWRTFLS 411
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+IIR L D + KL+ S +T+ A+ VF+Q++ P+V N +IRA + Q
Sbjct: 41 QIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQ 100
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A +++ M G D FT+PF++KAC + K +H K G S D++V + L+D
Sbjct: 101 AFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALID 160
Query: 123 LYLKCG--DVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y +CG V K+F+KM R VSW +M+ GL +G+L A
Sbjct: 161 CYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 27 GKTDHALLVFSQIRCP--HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84
G + A ++F ++ P +V TW ++I G +A L + M+ +G + D
Sbjct: 261 GDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVIS 320
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
++ AC S + G +H + ++ + +V + L+D+Y KCG++ +F+ + +
Sbjct: 321 ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380
Query: 145 VVSWTTMISGLAASG 159
+VSW TM+ GL G
Sbjct: 381 LVSWNTMLHGLGVHG 395
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
R L ++ ++ LLD+ + G A VF+ I + +WN M+ L + G +A+
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIE 402
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKG-------KEVHGLAVKAGFSRDMFVQS 118
L++ M G RPDK TF V+ +C + I++G ++V+ L +
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH------YG 456
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L+DL + G + K+ M + +VV W ++ ++D A
Sbjct: 457 CLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
RD+ +T++D Y +C ++ ++F+KM R+ VSW+TM+ G + +GD++ A
Sbjct: 213 QRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMA 266
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
I + GLS+D + L+D C G D A+ +F ++ +WN M+ L G
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRD-AMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
A L++ M + D ++ ++ + K E+ + R+ ST+
Sbjct: 202 RDARRLFDEMP----QRDLISWNTMLDGYARCREMSKAFEL----FEKMPERNTVSWSTM 253
Query: 121 MDLYLKCGDVDGGRKMFDKMRV--RSVVSWTTMISGLAASGDLDAA 164
+ Y K GD++ R MFDKM + ++VV+WT +I+G A G L A
Sbjct: 254 VMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEA 299
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 9 LSNDQLLVRKLLDLCSFYGKTDHA----LLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
L ND ++ +L+ + S D A LL+ S P TWN++ R + S ++++
Sbjct: 41 LQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPS--TWNMLSRGYSSSDSPVESI 98
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+Y+ M G +P+K TFPF++KAC + L + G+++ +K GF D++V + L+ LY
Sbjct: 99 WVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLY 158
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
C RK+FD+M R+VVSW ++++ L +G L+
Sbjct: 159 GTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLN 196
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+++++G D + L+ L KT A VF ++ +V +WN ++ AL +G
Sbjct: 138 EVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNL 197
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ MI F PD+ T ++ AC +L++ GK VH + + + + L+D
Sbjct: 198 VFECFCEMIGKRFCPDETTMVVLLSACGGNLSL--GKLVHSQVMVRELELNCRLGTALVD 255
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y K G ++ R +F++M ++V +W+ MI GLA G + A
Sbjct: 256 MYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEA 297
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 9 LSNDQLLVRKL----------LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG 58
L + Q++VR+L +D+ + G ++A LVF ++ +V+TW+ MI L G
Sbjct: 233 LVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYG 292
Query: 59 SSLQALLLYN-LMICNGFRPDKFTFPFVIKACIASLAIEKG-KEVHGLAVKAGFSRDMFV 116
+ +AL L++ +M + RP+ TF V+ AC + ++ G K H + M
Sbjct: 293 FAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIH 352
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
++D+ + G ++ KM V W T++S + D D
Sbjct: 353 YGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDED 399
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKT----DHALLVFSQIRCP-HVFTWNLMIRALTID 57
++I L D L++ K++ +F GK+ ++ ++ IR F++N ++ + +
Sbjct: 28 QLITRDLLRDDLIINKVV---TFLGKSADFASYSSVILHSIRSVLSSFSYNTLLSSYAVC 84
Query: 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
+ Y + NGF PD FTFP V KAC I +GK++HG+ K GF D++VQ
Sbjct: 85 DKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQ 144
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+ Y CG+ K+F +M VR VVSWT +I+G +G
Sbjct: 145 NSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTG 186
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM-ICNGFRPDKFTFPFVIKACI 90
A+ VF ++ +WN MI L S +A+ L++LM +G +PD V+ AC
Sbjct: 258 AMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACA 317
Query: 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ A++ G+ VH + AG D + + ++D+Y KCG ++ ++F+ +R ++V +W
Sbjct: 318 SLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNA 377
Query: 151 MISGLAASG 159
++ GLA G
Sbjct: 378 LLGGLAIHG 386
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+ I+ G+ D + ++D+ + G + AL +F+ IR +VFTWN ++ L I G L
Sbjct: 330 EYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGL 389
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99
++L + M+ GF+P+ TF + AC + +++G+
Sbjct: 390 ESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGR 427
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + G +D + L+ G++ +A VF ++ V +W +I T G +A
Sbjct: 132 VTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEA 191
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M P+ T+ V+ + + GK +HGL +K + + L+D+
Sbjct: 192 LDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDM 248
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y+KC + ++F ++ + VSW +MISGL
Sbjct: 249 YVKCEQLSDAMRVFGELEKKDKVSWNSMISGL 280
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G ++ + LLDL + YG D A LVF + + +WN +I + +AL
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M+ +GFRP F++ + AC ++ +E+GK VH +K+G F +TL+D+Y
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
K G + RK+FD++ R VVSW ++++ A G
Sbjct: 308 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG 342
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
+Q I R+ D ++ LL++ + G + A VF ++ TW +I +
Sbjct: 87 LQSIFRH----DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRP 142
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
ALL +N M+ G+ P++FT VIKA A G ++HG VK GF ++ V S L
Sbjct: 143 CDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSAL 202
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+DLY + G +D + +FD + R+ VSW +I+G A + A
Sbjct: 203 LDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
D+ + ++K C + +G+ VH +++ F D+ + +TL+++Y KCG ++ RK+F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 138 DKMRVRSVVSWTTMISGLA 156
+KM R V+WTT+ISG +
Sbjct: 119 EKMPQRDFVTWTTLISGYS 137
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
LLD+ + G A +F ++ V +WN ++ A G +A+ + M G RP+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ +F V+ AC S +++G + L K G + + T++DL + GD++ + +
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422
Query: 139 KMRVRSVVS-WTTMISG 154
+M + + W +++
Sbjct: 423 EMPIEPTAAIWKALLNA 439
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPF 84
+G A VF ++ ++F+WN+++ G +A+ LY+ M+ G +PD +TFP
Sbjct: 142 FGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPC 201
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144
V++ C + +GKEVH V+ G+ D+ V + L+ +Y+KCGDV R +FD+M R
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261
Query: 145 VVSWTTMISGLAASG 159
++SW MISG +G
Sbjct: 262 IISWNAMISGYFENG 276
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++RYG D +V L+ + G A L+F ++ + +WN MI +G +
Sbjct: 222 VVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEG 281
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ M PD T VI AC G+++H + GF+ D+ V ++L +
Sbjct: 282 LELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQM 341
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
YL G K+F +M + +VSWTTMISG
Sbjct: 342 YLNAGSWREAEKLFSRMERKDIVSWTTMISG 372
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + D + L + G A +FS++ + +W MI + +A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKA 382
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y +M + +PD+ T V+ AC ++ G E+H LA+KA + V + L+++
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y KC +D +F + ++V+SWT++I+GL
Sbjct: 443 YSKCKCIDKALDIFHNIPRKNVISWTSIIAGL 474
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 21 DLCSFYGK---TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77
+L + Y K D AL +F I +V +W +I L ++ +AL+ M +P
Sbjct: 438 NLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQP 496
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137
+ T + AC A+ GKE+H ++ G D F+ + L+D+Y++CG ++ F
Sbjct: 497 NAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF 556
Query: 138 DKMRVRSVVSWTTMISGLAASG 159
+ + + V SW +++G + G
Sbjct: 557 NSQK-KDVTSWNILLTGYSERG 577
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R G+ D L LLD+ G+ + A F+ + V +WN+++ + G
Sbjct: 524 VLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMV 582
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L++ M+ + RPD+ TF ++ C S + +G G + ++ + ++DL
Sbjct: 583 VELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDL 642
Query: 124 YLKCGDVDGGRKMFDKMRV 142
+ G++ K KM V
Sbjct: 643 LGRAGELQEAHKFIQKMPV 661
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 85/161 (52%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R GL +D++L L+D+ G D A +F +I V +W MI +
Sbjct: 244 IVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREG 303
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L++ ++ + RP+++TF V+ AC E GK+VHG + GF F S+L+D+
Sbjct: 304 FSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDM 363
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG+++ + + D +VSWT++I G A +G D A
Sbjct: 364 YTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEA 404
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 21 DLCSF---------YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM- 70
DLCS+ G + A +F ++ ++W M+ +AL+LY+LM
Sbjct: 150 DLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 209
Query: 71 -ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
+ N RP+ FT + A A I +GKE+HG V+AG D + S+LMD+Y KCG
Sbjct: 210 RVPNS-RPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGC 268
Query: 130 VDGGRKMFDKMRVRSVVSWTTMI 152
+D R +FDK+ + VVSWT+MI
Sbjct: 269 IDEARNIFDKIVEKDVVSWTSMI 291
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135
+P T+ +I+ C + A+E+GK+VH +GF + + + L+ +Y KCG + RK
Sbjct: 82 KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARK 141
Query: 136 MFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+FD+M R + SW M++G A G L+ A
Sbjct: 142 VFDEMPNRDLCSWNVMVNGYAEVGLLEEA 170
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ R G L+D+ + G + A V P + +W +I +G +A
Sbjct: 345 MTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEA 404
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-VHGLAVKAGFSRDMFVQSTLMD 122
L ++L++ +G +PD TF V+ AC + +EKG E + + K S + L+D
Sbjct: 405 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVD 464
Query: 123 LYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
L + G + + + +M ++ S W +++ G + G++D A
Sbjct: 465 LLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLA 507
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I G + L+ KL+ L + L+F + P F +N +I++ + L
Sbjct: 32 LIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHC 91
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ Y M+ + P +TF VIK+C A+ GK VH AV +GF D +VQ+ L+
Sbjct: 92 VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTF 151
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCGD++G R++FD+M +S+V+W +++SG +G D A
Sbjct: 152 YSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEA 192
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 22 LCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY G + A VF ++ + WN ++ +G + +A+ ++ M +GF PD
Sbjct: 148 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 207
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF ++ AC + A+ G VH + G ++ + + L++LY +CGDV R++FD
Sbjct: 208 SATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFD 267
Query: 139 KMRVRSVVSWTTMISGLAASG 159
KM+ +V +WT MIS G
Sbjct: 268 KMKETNVAAWTAMISAYGTHG 288
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
Q II GL + L L++L S G A VF +++ +V W MI A G
Sbjct: 232 QYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQ 291
Query: 62 QALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108
QA+ L+N M + G P+ TF V+ AC + +E+G+ V+ K+
Sbjct: 292 QAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKS 339
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 90/159 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R+ L LL+ + +C +D+A VFS I+ P+V +N MI+ ++ G L++
Sbjct: 27 LLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLES 86
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ M G D++T+ ++K+C + + GK VHG ++ GF R ++ +++L
Sbjct: 87 LSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVEL 146
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162
Y G + +K+FD+M R+VV W MI G SGD++
Sbjct: 147 YTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVE 185
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72
L++R D G + L +F Q+ + +WN MI +L+ G +AL L+ MI
Sbjct: 172 NLMIRGFCD----SGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMID 227
Query: 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF-VQSTLMDLYLKCGDVD 131
GF PD+ T V+ + ++ GK +H A +G +D V + L+D Y K GD++
Sbjct: 228 QGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLE 287
Query: 132 GGRKMFDKMRVRSVVSWTTMISGLAASG 159
+F KM+ R+VVSW T+ISG A +G
Sbjct: 288 AATAIFRKMQRRNVVSWNTLISGSAVNG 315
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP 77
L+D G + A +F +++ +V +WN +I ++G + L++ MI G P
Sbjct: 276 LVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAP 335
Query: 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRK 135
++ TF V+ C + +E+G+E+ GL ++ F + + ++DL + G + K
Sbjct: 336 NEATFLGVLACCSYTGQVERGEELFGLMMER-FKLEARTEHYGAMVDLMSRSGRITEAFK 394
Query: 136 MFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
M V + + W +++S + GD+ A
Sbjct: 395 FLKNMPVNANAAMWGSLLSACRSHGDVKLA 424
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Query: 3 KIIRYGLSNDQ-LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
+IIR GL DQ L+ + S ++ VF ++ P + WN +I+ +
Sbjct: 32 RIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFF 91
Query: 62 QALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
+ + + M+ G RPD++TFP V+K C + + G VHGL ++ GF +D+ V ++
Sbjct: 92 ETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSF 151
Query: 121 MDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+D Y KC D+ RK+F +M R+ VSWT ++ SG+L+ A
Sbjct: 152 VDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEA 195
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
+F + R V W+ +I +G +A +++ M +PD+F ++ AC
Sbjct: 260 LFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGC 319
Query: 95 IEKGKEVHG-LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
E ++V L + +V L+D+ KCG +D K+F++M R +VS+ +M+
Sbjct: 320 FELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMME 379
Query: 154 GLAASG 159
G+A G
Sbjct: 380 GMAIHG 385
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLM 70
+ +V L+D+ + G D A +F ++ + ++ M+ + I G +A+ L+ M
Sbjct: 338 SSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKM 397
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG---FSRDMFVQSTLMDLYLKC 127
+ G PD+ F ++K C S +E+G L K S D + S +++L +
Sbjct: 398 VDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHY--SCIVNLLSRT 455
Query: 128 GDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLDAA 164
G + ++ M + S W +++ G + G+ + A
Sbjct: 456 GKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIA 493
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G D ++ +D FYGK A VF ++ + +W ++ A G
Sbjct: 136 VLRIGFDKDVVVGTSFVD---FYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGEL 192
Query: 61 LQALLLYNLMICNGFRPDKF--TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118
+A +++LM P++ ++ ++ + S + K++ K RD+ +
Sbjct: 193 EEAKSMFDLM------PERNLGSWNALVDGLVKSGDLVNAKKLFDEMPK----RDIISYT 242
Query: 119 TLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++D Y K GD+ R +F++ R V +W+ +I G A +G + A
Sbjct: 243 SMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEA 288
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 88/156 (56%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I + L +D LV LL F+ +T ++ L+FS + P++F +N +I + +
Sbjct: 36 LINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHET 95
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L L+ + +G FTFP V+KAC + + + G ++H L VK GF+ D+ ++L+ +
Sbjct: 96 LDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSI 155
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y G ++ K+FD++ RSVV+WT + SG SG
Sbjct: 156 YSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 84/155 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G ++D + LL + S G+ + A +F +I V TW + T G +A
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREA 196
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+ L+ M+ G +PD + V+ AC+ ++ G+ + + ++ FV++TL++L
Sbjct: 197 IDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNL 256
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
Y KCG ++ R +FD M + +V+W+TMI G A++
Sbjct: 257 YAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 76/143 (53%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L++L + GK + A VF + + TW+ MI+ + + + L+ M+ +PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+F+ + +C + A++ G+ L + F ++F+ + L+D+Y KCG + G ++F
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 139 KMRVRSVVSWTTMISGLAASGDL 161
+M+ + +V ISGLA +G +
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHV 395
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 2 QKIIRYGLSNDQLLVRKLLDLC--SFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDG 58
+I GL + + LL C S G HA L+F P WN +IR +
Sbjct: 26 SHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYLIRGFSNSS 85
Query: 59 SSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
S L ++L YN M+ + RPD FTF F +K+C +I K E+HG +++GF D V
Sbjct: 86 SPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVA 145
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
++L+ Y G V+ K+FD+M VR +VSW MI + G
Sbjct: 146 TSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G +D ++ L+ S G + A VF ++ + +WN+MI + G QA
Sbjct: 133 VIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQA 192
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L +Y M G D +T ++ +C A+ G +H +A +FV + L+D+
Sbjct: 193 LSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDM 252
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG ++ +F+ MR R V++W +MI G G
Sbjct: 253 YAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHG 288
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G ++A+ VF+ +R V TWN MI + G ++A+ + M+ +G RP+
Sbjct: 249 LIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKM 136
TF ++ C +++G E H + + F V+ ++DLY + G ++ +M
Sbjct: 309 AITFLGLLLGCSHQGLVKEGVE-HFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEM 367
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 89/156 (57%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G SND LV LL+ + A+ +F I V +W+ +I +G++ +A
Sbjct: 189 VIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEA 248
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
LL++N M+ +G P+ T V++AC A+ +E+G++ H LA++ G ++ V + L+D+
Sbjct: 249 LLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDM 308
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y+KC + +F ++ + VVSW +ISG +G
Sbjct: 309 YMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNG 344
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79
+ C + + A +F ++ ++ WN ++++L+ + + L ++ M + +PD
Sbjct: 1 MGFCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDN 60
Query: 80 FTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
FT P +KAC + G+ +HG K D++V S+L+ +Y+KCG + +MFD
Sbjct: 61 FTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFD 120
Query: 139 KMRVRSVVSWTTMISGLAASG 159
++ +V+W++M+SG +G
Sbjct: 121 ELEKPDIVTWSSMVSGFEKNG 141
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
IR GL + + L+D+ + A VFS+I V +W +I T++G + +++
Sbjct: 291 IRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSI 350
Query: 65 LLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
+++M+ N RPD V+ +C +E+ K H +K GF + F+ ++L++L
Sbjct: 351 EEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVEL 410
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y +CG + K+F+ + ++ V WT++I+G G
Sbjct: 411 YSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHG 446
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFV 85
G+ AL +F ++ P + TW+ M+ +GS QA+ + M+ + PD+ T +
Sbjct: 110 GRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITL 169
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC G+ VHG ++ GFS D+ + ++L++ Y K +F + + V
Sbjct: 170 VSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDV 229
Query: 146 VSWTTMISGLAASG 159
+SW+T+I+ +G
Sbjct: 230 ISWSTVIACYVQNG 243
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+YG ++ + L++L S G +A VF+ I W +I I G +A
Sbjct: 392 VIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKA 451
Query: 64 LLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLM 121
L +N M+ + +P++ TF ++ AC + I +G + L V + ++ + L+
Sbjct: 452 LETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLV 511
Query: 122 DLYLKCGDVDGGRKMFDKM 140
DL + GD+D ++ +M
Sbjct: 512 DLLGRVGDLDTAIEITKRM 530
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 81/156 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+ + GL + KL+ L YG D A VF I ++ M++ +A
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M + P + F +++K C + GKE+HGL VK+GFS D+F + L ++
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KC V+ RK+FD+M R +VSW T+++G + +G
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNG 215
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+ GL + +V L+ + + D A +F +++ + +WN MI +G + AL
Sbjct: 364 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 423
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAI-EKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
++ M +PD FT+ VI A IA L+I K +HG+ +++ +++FV + L+D+
Sbjct: 424 NYFSQMRSRTVKPDTFTYVSVITA-IAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R +FD M R V +W MI G G
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHG 518
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 80/141 (56%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ + G + A +F + +V +WN MI A + + +A+L++ M+ G +P
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPT 336
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
+ + AC +E+G+ +H L+V+ G R++ V ++L+ +Y KC +VD MF
Sbjct: 337 DVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFG 396
Query: 139 KMRVRSVVSWTTMISGLAASG 159
K++ R++VSW MI G A +G
Sbjct: 397 KLQSRTLVSWNAMILGFAQNG 417
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G S D + L ++ + + + A VF ++ + +WN ++ + +G + A
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + M +P T V+ A A I GKE+HG A+++GF + + + L+D+
Sbjct: 221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDM 280
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ R++FD M R+VVSW +MI + + A
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R L + + L+D+ + G A L+F + HV TWN MI G A
Sbjct: 464 VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAA 523
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
L L+ M +P+ TF VI AC S +E G
Sbjct: 524 LELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
++++ +++ L K G ++ F Q+ L+ L+ + G VD ++F+ + + V + TM+
Sbjct: 49 SLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLK 108
Query: 154 GLAASGDLDAA 164
G A DLD A
Sbjct: 109 GFAKVSDLDKA 119
>sp|O23491|PP315_ARATH Pentatricopeptide repeat-containing protein At4g16470
OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2
Length = 501
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G + ++ L KLL L + G A ++F ++ + WN MI G + L +Y
Sbjct: 138 GFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIY 197
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M N PD++TF V +AC A +E GK H + +K ++ V S L+D+Y KC
Sbjct: 198 YDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKC 257
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161
G ++FD++ R+V++WT++ISG G +
Sbjct: 258 SSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKV 291
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
++ L + G +A+ L+ +G + + T+ +++ C KGK +H GF
Sbjct: 83 LKGLCVTGRLKEAV---GLLWSSGLQVEPETYAVLLQECKQRKEYTKGKRIHAQMFVVGF 139
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+ + +++ L+ LY GD+ +F +++R ++ W MISG G
Sbjct: 140 ALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKG 188
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 35 VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94
VF Q+ +V TW +I G + L + M G RP+ TF V+ AC
Sbjct: 266 VFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGL 325
Query: 95 IEKGKE 100
++KG E
Sbjct: 326 VDKGWE 331
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGS 59
++++ GL D + K L C +D +A +VF P F WNLMIR +
Sbjct: 36 RMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDE 95
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++LLLY M+C+ + +TFP ++KAC A E+ ++H K G+ D++ ++
Sbjct: 96 PERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNS 155
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L++ Y G+ +FD++ VSW ++I G +G +D A
Sbjct: 156 LINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIA 200
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
GK D AL +F ++ + +W MI + +AL L++ M + PD + +
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254
Query: 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVV 146
AC A+E+GK +H K D + L+D+Y KCG+++ ++F ++ +SV
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 147 SWTTMISGLAASG 159
+WT +ISG A G
Sbjct: 315 AWTALISGYAYHG 327
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D +L L+D+ + G+ + AL VF I+ V W +I G +A+ + M
Sbjct: 281 DSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST------LMDLYL 125
G +P+ TF V+ AC + +E+GK + RD ++ T ++DL
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGK-----LIFYSMERDYNLKPTIEHYGCIVDLLG 395
Query: 126 KCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
+ G +D ++ +M ++ + V W ++
Sbjct: 396 RAGLLDEAKRFIQEMPLKPNAVIWGALLKA 425
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMI 71
D + L+D+ + G A LVFS++R + +WN +I + + + +AL L+NL++
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 72 CNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
F PD+ T V+ AC + A +KG+E+HG ++ G+ D V ++L+D+Y KCG +
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+FD + + +VSWT MI+G G
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHG 579
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 22 LCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L +FY K D A VF ++ V +WN +I +G + + L ++ M+ +G D
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T V C S I G+ VH + VKA FSR+ +TL+D+Y KCGD+D + +F
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 355
Query: 139 KMRVRSVVSWTTMISGLAASG 159
+M RSVVS+T+MI+G A G
Sbjct: 356 EMSDRSVVSYTSMIAGYAREG 376
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ S + LLD+ S G D A VF ++ V ++ MI +G + +A+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
L+ M G PD +T V+ C +++GK VH + D+FV + LMD+Y
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
KCG + +F +MRV+ ++SW T+I G + +
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 476
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 80/152 (52%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G D L KL + + G A VF +++ WN+++ L G ++ L+
Sbjct: 124 GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M+ +G D +TF V K+ + ++ G+++HG +K+GF V ++L+ YLK
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
VD RK+FD+M R V+SW ++I+G ++G
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107
N +R G+ A+ L L + + D T V++ C S +++ GKEV
Sbjct: 65 NTQLRRFCESGNLENAVKL--LCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122
Query: 108 AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
GF D + S L +Y CGD+ ++FD++++ + W +++ LA SGD +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGS 179
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
I+R G +D+ + L+D+ + G A ++F I + +W +MI + G +A
Sbjct: 525 IMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEA 584
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98
+ L+N M G D+ +F ++ AC S +++G
Sbjct: 585 IALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619
>sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3
SV=1
Length = 527
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--RCPHVFTWNLMIRALTIDGSSL 61
I Y L N+ + KL+ L + G + A VF ++ R F WN +I G
Sbjct: 118 IPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYE 177
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121
A+ LY M +G +PD+FTFP V+KAC +++ G+ +H VK GF D++V + L+
Sbjct: 178 DAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALV 237
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+Y KCGD+ R +FD + + VSW +M++G G L A
Sbjct: 238 VMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEA 280
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G D ++ L+ + + G A VF I +WN M+ G +A
Sbjct: 221 LVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEA 280
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L ++ LM+ NG PDK V+ L+ + G+++HG ++ G ++ V + L+ L
Sbjct: 281 LDIFRLMVQNGIEPDKVAISSVLARV---LSFKHGRQLHGWVIRRGMEWELSVANALIVL 337
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
Y K G + +FD+M R VSW +IS + + +
Sbjct: 338 YSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSN 374
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
F +++ C + AI+ G VH L ++ + S L+ LY CG + ++FD+M
Sbjct: 95 FASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMS 154
Query: 142 VR--SVVSWTTMISGLAASGDLDAA 164
R S +W ++ISG A G + A
Sbjct: 155 KRDSSPFAWNSLISGYAELGQYEDA 179
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+IR G+ + + L+ L S G+ A +F Q+ +WN +I A + + + L+
Sbjct: 319 VIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLK- 377
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMD 122
+ M +PD TF V+ C + +E G+ + L K G M + +++
Sbjct: 378 --YFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVN 435
Query: 123 LYLKCGDVDGGRKM 136
LY + G ++ M
Sbjct: 436 LYGRAGMMEEAYSM 449
>sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein At3g50420
OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1
Length = 794
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
Query: 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN-LM 70
D L LLD+ G A VF +I P++ +WN +I + +G QA+L+Y L+
Sbjct: 334 DLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLL 393
Query: 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+ RPD++TF I A GK +HG K G+ R +FV +TL+ +Y K +
Sbjct: 394 RMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREA 453
Query: 131 DGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ +K+FD M+ R VV WT MI G + G+ + A
Sbjct: 454 ESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELA 487
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ G S++ ++ +L + S G + A +F + WN MI +
Sbjct: 224 QIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLKNDKIED 283
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
L+ + M+ +G P +FT+ V+ C + GK +H + + D+ + + L+D
Sbjct: 284 GLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLD 343
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y CGD+ +F ++ ++VSW ++ISG + +G
Sbjct: 344 MYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENG 380
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 21 DLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS-SLQALLLYNLMICNGFR 76
+L S Y G + A VF ++ +V ++N + A + + + A L M +
Sbjct: 137 NLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVK 196
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
P+ TF +++ C + G ++ +K G+S ++ VQ++++ +Y CGD++ R++
Sbjct: 197 PNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRI 256
Query: 137 FDKMRVRSVVSWTTMISG 154
FD + R V+W TMI G
Sbjct: 257 FDCVNNRDAVAWNTMIVG 274
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 85 VIKACIASLAIEKGKEVHGLAVKAGF---SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141
+ + C++ +++ +++H L + AG + + + L+ +Y++CG ++ RK+FDKM
Sbjct: 100 LTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMP 159
Query: 142 VRSVVSWTTMISGLAASGDL 161
R+VVS+ + S + + D
Sbjct: 160 HRNVVSYNALYSAYSRNPDF 179
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%)
Query: 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87
+ + A VF ++ V W MI + G+S A+ + M R D F+ VI
Sbjct: 452 EAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIG 511
Query: 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
AC + +G+ H LA++ GF M V L+D+Y K G + +F +
Sbjct: 512 ACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKC 571
Query: 148 WTTMISGLAASGDLDAA 164
W +M+ + G ++ A
Sbjct: 572 WNSMLGAYSQHGMVEKA 588
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Query: 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
L+D+ GK + A +FS P + WN M+ A + G +AL + ++ NGF PD
Sbjct: 544 LVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPD 603
Query: 79 KFTFPFVIKACIASLAIEKGK----EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
T+ ++ AC + +GK ++ +KAGF S +++L K G VD
Sbjct: 604 AVTYLSLLAACSHRGSTLQGKFLWNQMKEQGIKAGFKH----YSCMVNLVSKAGLVDEAL 659
Query: 135 KMFDKMRVRSVVS--WTTMISGLAASGDL 161
++ ++ + + W T++S + +L
Sbjct: 660 ELIEQSPPGNNQAELWRTLLSACVNTRNL 688
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147
+ + L+ +Y++C ++ RK+FDKM R++V+
Sbjct: 23 YANNNLISMYVRCSSLEQARKVFDKMPQRNIVT 55
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFY---GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+++ G+ N L+V L FY G+ AL F + V +W +I A + G
Sbjct: 209 NMVKVGVGN--LIVES--SLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGH 264
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
++A+ ++ M+ + F P++FT ++KAC A+ G++VH L VK D+FV ++
Sbjct: 265 GIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTS 324
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
LMD+Y KCG++ RK+FD M R+ V+WT++I+ A G
Sbjct: 325 LMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREG 364
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
+II+ + + + L+ L G++ A V Q+ V +W MI + G +
Sbjct: 410 QIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESE 469
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
AL MI G P+ FT+ +KAC S ++ G+ +H +A K ++FV S L+
Sbjct: 470 ALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIH 529
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y KCG V ++FD M +++VSW MI G A +G
Sbjct: 530 MYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNG 566
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 2 QKIIRYGLSNDQLLVRK-----------LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLM 50
+K +R+G L+V++ L+D+ + G+ VF + + TW +
Sbjct: 297 EKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSI 356
Query: 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110
I A +G +A+ L+ +M + T +++AC + A+ GKE+H +K
Sbjct: 357 IAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSI 416
Query: 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+++++ STL+ LY KCG+ + ++ R VVSWT MISG ++ G A
Sbjct: 417 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 470
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 11 NDQLLV--RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN 68
+DQ++ L+ C G +A VF + + TW MI G +A L+
Sbjct: 113 DDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFE 172
Query: 69 LMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
+ +G R ++ F ++ C E G++VHG VK G ++ V+S+L+ Y +C
Sbjct: 173 DYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC 231
Query: 128 GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
G++ + FD M + V+SWT +IS + G
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKG 263
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
K +H +A+K + ++ + L+ ++ GD+ RK+FD M ++ V+WT MI G
Sbjct: 102 KRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKY 161
Query: 159 GDLDAA 164
G D A
Sbjct: 162 GLEDEA 167
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86
G A VF + ++ +W MI +G +AL L M GF D + F ++
Sbjct: 535 GFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATIL 594
Query: 87 KAC 89
C
Sbjct: 595 STC 597
>sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730
OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
Length = 653
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ G +D ++ L+D+ YGK+ + A +F + +FTWN ++ G
Sbjct: 289 VKTGSGSDIVVSNALIDM---YGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHD 345
Query: 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQ 117
L L+ M+C+G RPD T V+ C ++ +G+E+HG + +G S + F+
Sbjct: 346 GTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIH 405
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++LMD+Y+KCGD+ R +FD MRV+ SW MI+G
Sbjct: 406 NSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMING 442
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSS 60
++R G +D R L + Y K A+LVF VF +N +I ++GS
Sbjct: 86 MVRKGFLDDS--PRAGTSLVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFVVNGSP 142
Query: 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120
L A+ Y M NG PDK+TFP ++K A + + K+VHGLA K GF D +V S L
Sbjct: 143 LDAMETYREMRANGILPDKYTFPSLLKGSDA-MELSDVKKVHGLAFKLGFDSDCYVGSGL 201
Query: 121 MDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLA 156
+ Y K V+ +K+FD++ R V W +++G +
Sbjct: 202 VTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYS 238
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN ++ + ALL+++ M G + T V+ A S I+ G+ +HGLAV
Sbjct: 230 WNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAV 289
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K G D+ V + L+D+Y K ++ +F+ M R + +W +++ GD D
Sbjct: 290 KTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGT 347
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL 69
S+++ + L+D+ G A +VF +R +WN+MI + AL +++
Sbjct: 399 SSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSC 458
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGK 99
M G +PD+ TF +++AC S + +G+
Sbjct: 459 MCRAGVKPDEITFVGLLQACSHSGFLNEGR 488
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 86 IKACIASL---AIEK----GKEVHGLAVKAGFSRDMFVQST-LMDLYLKCGDVDGGRKMF 137
+ CIA+L A K G+++HG V+ GF D T L+++Y KCG + +F
Sbjct: 60 VATCIATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVF 119
Query: 138 DKMRVRSVVSWTTMISGLAASGD-LDA 163
R V + +ISG +G LDA
Sbjct: 120 GGSE-RDVFGYNALISGFVVNGSPLDA 145
>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2
SV=2
Length = 775
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
II GLS + + KL+ + YGK + + VF + +F WN +I+A +G ++
Sbjct: 50 IITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARS 109
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMD 122
L + M+ +G PD FT P V+ AC L G VHGL +K GF R+ V ++ +
Sbjct: 110 LCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVY 169
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG + +FD+M R VV+WT +ISG +G+ +
Sbjct: 170 FYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGG 211
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
+V L+DL G A +F + +V TWN MI + S +A+ L++ M+
Sbjct: 470 VVNSLIDLYGKMGDLTVAWRMFCEAD-TNVITWNAMIASYVHCEQSEKAIALFDRMVSEN 528
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134
F+P T ++ AC+ + ++E+G+ +H + ++ + + L+D+Y KCG ++ R
Sbjct: 529 FKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSR 588
Query: 135 KMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
++FD + V W MISG GD+++A
Sbjct: 589 ELFDAGNQKDAVCWNVMISGYGMHGDVESA 618
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 25 FYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF---RPD 78
FY K A LVF ++ V W +I +G S L M G +P+
Sbjct: 170 FYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPN 229
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
T +AC A+++G+ +HG AVK G + FVQS++ Y K G+ F
Sbjct: 230 PRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFR 289
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
++ + SWT++I+ LA SGD++ +
Sbjct: 290 ELGDEDMFSWTSIIASLARSGDMEES 315
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ GL++ + + + S G A L F ++ +F+W +I +L G ++
Sbjct: 257 VKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESF 316
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
++ M G PD +I + + +GK HG ++ FS D V ++L+ +Y
Sbjct: 317 DMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMY 376
Query: 125 LKCGDVDGGRKMFDKMRVR-SVVSWTTMISG 154
K + K+F ++ + +W TM+ G
Sbjct: 377 CKFELLSVAEKLFCRISEEGNKEAWNTMLKG 407
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQ 62
+IR+ S D + LL + + A +F +I + WN M++ ++
Sbjct: 357 VIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVK 416
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
+ L+ + G D + VI +C A+ GK +H VK + V ++L+D
Sbjct: 417 CIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLID 476
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153
LY K GD+ +MF + +V++W MI+
Sbjct: 477 LYGKMGDLTVAWRMFCEADT-NVITWNAMIA 506
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74
L L+D+ + G + + +F WN+MI + G A+ L++ M +
Sbjct: 570 LSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESD 629
Query: 75 FRPDKFTFPFVIKACIASLAIEKGKEV----HGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130
+P TF ++ AC + +E+GK++ H VK S L+DL + G++
Sbjct: 630 VKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKH----YSCLVDLLSRSGNL 685
Query: 131 DGGRKMFDKMRVRS-VVSWTTMISGLAASGDLD 162
+ M V W T++S G+ +
Sbjct: 686 EEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFE 718
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSW 148
C SL++E ++ + L + G S ++FV S L+ Y G + ++F + R + W
Sbjct: 34 CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93
Query: 149 TTMISGLAASGD 160
++I ++GD
Sbjct: 94 NSIIKAHFSNGD 105
>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2
SV=1
Length = 893
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLC----SFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTI 56
+I++GL + LDLC S Y KTD +A +F ++ VF W +MI A T
Sbjct: 49 VIKFGLLEN-------LDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTK 101
Query: 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116
AL L+ M+ +G P++FTF V+++C I G VHG +K GF + V
Sbjct: 102 SQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVV 161
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158
S+L DLY KCG ++F ++ +SWT MIS L +
Sbjct: 162 GSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGA 203
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 87/161 (54%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
++R + + ++ L+D + K D+A V ++ T+ ++ G A
Sbjct: 453 LLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMA 512
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L + N M +G R D+ + P I A A+E GK +H +VK+GFS V ++L+D+
Sbjct: 513 LSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDM 572
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
Y KCG ++ +K+F+++ VVSW ++SGLA++G + +A
Sbjct: 573 YSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSA 613
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
II G+ + +L L+D S + K + A+ V + VF W ++ + + +
Sbjct: 249 NIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKE 308
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122
A+ + M G +P+ FT+ ++ C A +++ GK++H +K GF V + L+D
Sbjct: 309 AVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVD 368
Query: 123 LYLKC--GDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y+KC +V+ R +F M +VVSWTT+I GL G
Sbjct: 369 MYMKCSASEVEASR-VFGAMVSPNVVSWTTLILGLVDHG 406
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+I+ G + ++ L DL S G+ A +FS ++ +W +MI +L +A
Sbjct: 150 VIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREA 209
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L Y+ M+ G P++FTF ++ A + L +E GK +H + G ++ ++++L+D
Sbjct: 210 LQFYSEMVKAGVPPNEFTFVKLLGAS-SFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDF 268
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGL 155
Y + ++ ++ + + V WT+++SG
Sbjct: 269 YSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGF 300
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
G +H +K G ++ + + L+ LYLK + RK+FD+M R+V +WT MIS
Sbjct: 42 GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTK 101
Query: 158 SGDLDAA 164
S + +A
Sbjct: 102 SQEFASA 108
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGS 59
+ I+ G + + L+D+ CS A VF + P+V +W +I L G
Sbjct: 350 QTIKVGFEDSTDVGNALVDMYMKCS--ASEVEASRVFGAMVSPNVVSWTTLILGLVDHGF 407
Query: 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119
L M+ P+ T V++AC + + E+H ++ +M V ++
Sbjct: 408 VQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNS 467
Query: 120 LMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
L+D Y VD + M+ R +++T++++ G + A
Sbjct: 468 LVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMA 512
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ G S ++ L+D+ S G + A VF +I P V +WN ++ L +G AL
Sbjct: 555 VKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSAL 614
Query: 65 LLYNLMICNGFRPDKFTFPFVIKAC 89
+ M PD TF ++ AC
Sbjct: 615 SAFEEMRMKETEPDSVTFLILLSAC 639
>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770
OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
Length = 774
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 32/185 (17%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQI--------------RC-------- 41
I+R G+ +D L +LLDL G D+A VF ++ RC
Sbjct: 32 IVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEA 91
Query: 42 -------PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92
P V +WN MI L G +AL++Y M+C+GF P +FT V+ AC
Sbjct: 92 CEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKV 151
Query: 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG-DVDGGRKMFDKMRVRSVVSWTTM 151
L G HG+AVK G +++FV + L+ +Y KCG VD G ++F+ + + VS+T +
Sbjct: 152 LDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAV 211
Query: 152 ISGLA 156
I GLA
Sbjct: 212 IGGLA 216
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ-IRCPHVFTWNLMIRALTIDGSSLQ 62
+IR +S + +V L+ + S K + + +F I + WN MI + +
Sbjct: 442 VIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTK 501
Query: 63 ALLLYNLM-----ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
AL+L+ M +C P++ +F V+ +C ++ G++ HGL VK+G+ D FV+
Sbjct: 502 ALILFRRMHQTAVLC----PNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVE 557
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
+ L D+Y KCG++D R+ FD + ++ V W MI G +G D A
Sbjct: 558 TALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEA 604
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY 67
G +++ +L C G + +FS I P V WN M+ + +A+ +
Sbjct: 345 GFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNF 404
Query: 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127
M +PDK T ++ +C +E GK++HG+ ++ S++ + S L+ +Y +C
Sbjct: 405 RQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSEC 464
Query: 128 GDVDGGRKMFDK-MRVRSVVSWTTMISGL 155
++ +FD + + W +MISG
Sbjct: 465 EKMEISECIFDDCINELDIACWNSMISGF 493
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
Query: 5 IRYGLSNDQLLVRKLLDL---CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61
++ GL + + LL + C F D+ + VF + P+ ++ +I L + L
Sbjct: 165 VKTGLDKNIFVGNALLSMYAKCGFI--VDYGVRVFESLSQPNEVSYTAVIGGLARENKVL 222
Query: 62 QALLLYNLMICNGFRPDKFTFPFVI------KACIASLAI---EKGKEVHGLAVKAGFSR 112
+A+ ++ LM G + D ++ + C + I E GK++H LA++ GF
Sbjct: 223 EAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGG 282
Query: 113 DMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
D+ + ++L+++Y K D++G +F +M +VVSW MI G
Sbjct: 283 DLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFG 326
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157
GK +HG V+ G D ++ + L+DLY++CGD D RK+FD+M VR V SW ++
Sbjct: 25 GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84
Query: 158 SGDLDAA 164
GDL A
Sbjct: 85 VGDLGEA 91
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQA 63
+++ G +D + L D+ G+ D A F + + WN MI +G +A
Sbjct: 545 VVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEA 604
Query: 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE-------VHGLAVKAGFSRDMFV 116
+ LY MI +G +PD TF V+ AC S +E G E +HG+ + D ++
Sbjct: 605 VGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPEL----DHYI 660
Query: 117 QSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVSWTTMISGLAASGDLDAA 164
++D + G ++ K+ + + S V W ++S GD+ A
Sbjct: 661 --CIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLA 707
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 35/152 (23%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+R G D L LL++ + + A L+F+++ +V +WN+MI + S +++
Sbjct: 276 LRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSV 335
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
M +GF+P++ T V+ AC S
Sbjct: 336 EFLTRMRDSGFQPNEVTCISVLGACFRS-------------------------------- 363
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156
GDV+ GR++F + SV +W M+SG +
Sbjct: 364 ---GDVETGRRIFSSIPQPSVSAWNAMLSGYS 392
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%)
Query: 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103
V WNL IR +++LLL+ M GF P+ FTFPFV KAC + + VH
Sbjct: 17 VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 76
Query: 104 LAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDA 163
+K+ F D+FV + +D+++KC VD K+F++M R +W M+SG SG D
Sbjct: 77 HLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDK 136
Query: 164 A 164
A
Sbjct: 137 A 137
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Query: 24 SFYGKT---DHALLVFSQIRCPH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78
S YGK D A LVF I V +WN M +A ++ G + A LY LM+ F+PD
Sbjct: 196 STYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 255
Query: 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138
TF + +C + +G+ +H A+ G +D+ +T + +Y K D R +FD
Sbjct: 256 LSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD 315
Query: 139 KMRVRSVVSWTTMISGLAASGDLDAA 164
M R+ VSWT MISG A GD+D A
Sbjct: 316 IMTSRTCVSWTVMISGYAEKGDMDEA 341
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 1/156 (0%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I G D + + + S T A L+F + +W +MI G +AL
Sbjct: 283 IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 342
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDL 123
L++ MI +G +PD T +I C ++E GK + A G RD + + + L+D+
Sbjct: 343 ALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDM 402
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
Y KCG + R +FD ++VV+WTTMI+G A +G
Sbjct: 403 YSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNG 438
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 30 DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89
D+A VF ++ TWN M+ G + +A L+ M N PD T +I++
Sbjct: 104 DYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSA 163
Query: 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RSVVS 147
+++ + +H + ++ G + V +T + Y KCGD+D + +F+ + R+VVS
Sbjct: 164 SFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVS 223
Query: 148 WTTMISGLAASGD 160
W +M + G+
Sbjct: 224 WNSMFKAYSVFGE 236
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 7 YGLSNDQLLV-RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
YG D +++ L+D+ S G A +F V TW MI ++G L+AL
Sbjct: 386 YGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALK 445
Query: 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLY 124
L++ MI ++P+ TF V++AC S ++EKG E H + S + S ++DL
Sbjct: 446 LFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLL 505
Query: 125 LKCGDVDGGRKMFDKMRVR 143
+ G ++ ++ M +
Sbjct: 506 GRKGKLEEALELIRNMSAK 524
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNL-MICNGFR 76
KL++L + G A F I+ V+ WNLMI G+S + + ++L M+ +G
Sbjct: 91 KLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLT 150
Query: 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136
PD TFP V+KAC + G ++H LA+K GF D++V ++L+ LY + V R +
Sbjct: 151 PDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 207
Query: 137 FDKMRVRSVVSWTTMISGLAASGDLDAA 164
FD+M VR + SW MISG SG+ A
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEA 235
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
+++G D + L+ L S Y +A ++F ++ + +WN MI G++ +AL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236
Query: 65 LLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L NG R D T ++ AC + +G +H ++K G ++FV + L+DL
Sbjct: 237 TL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVSWTTMI 152
Y + G + +K+FD+M VR ++SW ++I
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSII 320
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I++GL ++ + KL+DL + +G+ VF ++ + +WN +I+A ++ L+A+
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVHGLAVKAG-FSRDMFVQSTLMD 122
L+ M + +PD T + + ++ L I + V G ++ G F D+ + + ++
Sbjct: 334 SLFQEMRLSRIQPDCLTL-ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392
Query: 123 LYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
+Y K G VD R +F+ + V+SW T+ISG A +G
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNG 429
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 27 GKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFV 85
G D A VF+ + V +WN +I +G + +A+ +YN+M G ++ T+ V
Sbjct: 398 GLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSV 457
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
+ AC + A+ +G ++HG +K G D+FV ++L D+Y KCG ++ +F ++ +
Sbjct: 458 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNS 517
Query: 146 VSWTTMIS--GLAASGD 160
V W T+I+ G G+
Sbjct: 518 VPWNTLIACHGFHGHGE 534
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ 62
++++ GL D +V L D+ G+ + AL +F QI + WN +I G +
Sbjct: 476 RLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEK 535
Query: 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLM 121
A++L+ M+ G +PD TF ++ AC S +++G+ + G + + ++
Sbjct: 536 AVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMV 595
Query: 122 DLYLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
D+Y + G ++ K M ++ S W ++S G++D
Sbjct: 596 DMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVD 637
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISG 154
++ K +H V + +++ + + L++LY G+V R FD ++ R V +W MISG
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 155 LAASGD 160
+G+
Sbjct: 127 YGRAGN 132
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106
WN M+ T + L L+ LM G R D FT V K C AI +GK+VH A+
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544
Query: 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164
K+G+ D++V S ++D+Y+KCGD+ + FD + V V+WTTMISG +G+ + A
Sbjct: 545 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
I+ G D + +LD+ G A F I P W MI +G +A
Sbjct: 544 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAF 603
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124
+++ M G PD+FT + KA A+E+G+++H A+K + D FV ++L+D+Y
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663
Query: 125 LKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160
KCG +D +F ++ + ++ +W M+ GLA G+
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 699
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL- 61
+I+ + + ++ L+ L+ + S G +A VF ++ + +WN ++ A +
Sbjct: 64 RILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVV 123
Query: 62 ----QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117
QA LL+ ++ + + T ++K C+ S + + HG A K G D FV
Sbjct: 124 ENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVA 183
Query: 118 STLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
L+++YLK G V G+ +F++M R VV W M+ G
Sbjct: 184 GALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 2/160 (1%)
Query: 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQAL 64
++ +ND + L+D+ + G D A +F +I ++ WN M+ L G + L
Sbjct: 645 LKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETL 704
Query: 65 LLYNLMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123
L+ M G +PDK TF V+ AC S L E K + + G ++ S L D
Sbjct: 705 QLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADA 764
Query: 124 YLKCGDVDGGRKMFDKMRVRSVVS-WTTMISGLAASGDLD 162
+ G V + + M + + S + T+++ GD +
Sbjct: 765 LGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTE 804
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91
A VF + + +WN +I + +G ++A+ L+ ++ G +PD++T V+KA +
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428
Query: 92 -SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTT 150
+ K+VH A+K D FV + L+D Y + + +F++ +V+W
Sbjct: 429 LPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNA 487
Query: 151 MISGLAASGD 160
M++G S D
Sbjct: 488 MMAGYTQSHD 497
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%)
Query: 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129
M+ + D+ TF ++ + ++ G++VH +A+K G + V ++L+++Y K
Sbjct: 306 MVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRK 365
Query: 130 VDGGRKMFDKMRVRSVVSWTTMISGLAASG 159
R +FD M R ++SW ++I+G+A +G
Sbjct: 366 FGFARTVFDNMSERDLISWNSVIAGIAQNG 395
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145
++ I S + GK H + + + F+ + L+ +Y KCG + R++FDKM R +
Sbjct: 46 LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105
Query: 146 VSWTTMISGLAASGD 160
VSW ++++ A S +
Sbjct: 106 VSWNSILAAYAQSSE 120
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALL 65
+ GL D+ + L+++ +GK ++F ++ V WNLM++A G +A+
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232
Query: 66 LYNLMICNGFRPDKFTF 82
L + +G P++ T
Sbjct: 233 LSSAFHSSGLNPNEITL 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,186,610
Number of Sequences: 539616
Number of extensions: 1980278
Number of successful extensions: 7024
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 4547
Number of HSP's gapped (non-prelim): 1874
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)