Query 031208
Match_columns 164
No_of_seqs 163 out of 1405
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 10:48:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 7.5E-37 1.6E-41 236.0 14.2 162 3-164 249-410 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.5E-35 5.4E-40 231.9 15.6 163 2-164 211-373 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 6E-35 1.3E-39 229.8 15.3 163 2-164 312-474 (857)
4 PLN03081 pentatricopeptide (PP 100.0 9.9E-35 2.2E-39 224.3 15.2 163 2-164 147-309 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-34 3E-39 228.2 14.9 164 1-164 460-633 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 2.7E-34 5.8E-39 226.6 14.7 158 7-164 573-738 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.7 1.2E-17 2.6E-22 86.8 5.7 50 42-91 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 8.7E-17 1.9E-21 83.5 5.6 50 77-126 1-50 (50)
9 KOG4422 Uncharacterized conser 99.5 8.8E-13 1.9E-17 94.3 10.9 130 8-141 202-340 (625)
10 PRK11788 tetratricopeptide rep 99.4 8.6E-12 1.9E-16 91.0 12.4 147 15-162 109-266 (389)
11 PRK11788 tetratricopeptide rep 99.3 5.4E-11 1.2E-15 86.9 13.8 135 20-156 187-326 (389)
12 PF12854 PPR_1: PPR repeat 99.3 3.6E-12 7.8E-17 60.2 3.3 33 109-141 2-34 (34)
13 PF12854 PPR_1: PPR repeat 99.3 4.5E-12 9.7E-17 59.9 3.5 34 7-40 1-34 (34)
14 KOG4422 Uncharacterized conser 99.2 5.4E-10 1.2E-14 80.4 12.6 156 2-162 139-329 (625)
15 TIGR02917 PEP_TPR_lipo putativ 99.2 8.8E-10 1.9E-14 87.5 14.5 149 12-162 600-753 (899)
16 TIGR02917 PEP_TPR_lipo putativ 99.2 1.5E-09 3.2E-14 86.2 14.2 146 16-163 570-721 (899)
17 KOG4318 Bicoid mRNA stability 99.1 3.1E-09 6.6E-14 82.2 10.9 60 2-62 14-101 (1088)
18 PF13429 TPR_15: Tetratricopep 99.0 1.5E-09 3.3E-14 76.1 8.2 151 11-164 108-267 (280)
19 TIGR00756 PPR pentatricopeptid 99.0 1.5E-09 3.2E-14 51.5 4.4 34 46-79 2-35 (35)
20 TIGR02521 type_IV_pilW type IV 98.9 8.4E-08 1.8E-12 64.6 13.7 149 13-162 65-220 (234)
21 TIGR02521 type_IV_pilW type IV 98.9 9.1E-08 2E-12 64.4 13.1 152 12-164 30-188 (234)
22 PF13812 PPR_3: Pentatricopept 98.9 3E-09 6.6E-14 50.2 4.0 33 45-77 2-34 (34)
23 PF10037 MRP-S27: Mitochondria 98.9 3.5E-08 7.7E-13 72.2 10.5 121 7-127 60-186 (429)
24 TIGR00990 3a0801s09 mitochondr 98.8 1.8E-07 4E-12 72.5 13.7 150 13-164 331-486 (615)
25 PRK15174 Vi polysaccharide exp 98.8 2.9E-07 6.2E-12 71.8 13.9 116 14-131 145-263 (656)
26 TIGR00756 PPR pentatricopeptid 98.8 1.1E-08 2.4E-13 48.4 4.0 35 80-114 1-35 (35)
27 PF13812 PPR_3: Pentatricopept 98.8 1.7E-08 3.8E-13 47.5 4.2 33 80-112 2-34 (34)
28 PF08579 RPM2: Mitochondrial r 98.8 2.7E-07 5.8E-12 54.9 9.7 82 46-127 27-117 (120)
29 PRK15174 Vi polysaccharide exp 98.7 1.1E-06 2.4E-11 68.7 15.4 149 13-163 110-264 (656)
30 PF13429 TPR_15: Tetratricopep 98.7 1.7E-07 3.8E-12 65.7 9.3 131 9-141 142-275 (280)
31 PF01535 PPR: PPR repeat; Int 98.7 3.1E-08 6.6E-13 45.6 3.4 29 46-74 2-30 (31)
32 PRK12370 invasion protein regu 98.7 2.9E-06 6.2E-11 65.2 15.1 147 10-159 334-489 (553)
33 PRK09782 bacteriophage N4 rece 98.6 7.4E-07 1.6E-11 72.1 12.2 103 58-163 590-695 (987)
34 TIGR00990 3a0801s09 mitochondr 98.6 2.5E-06 5.3E-11 66.3 13.4 151 13-164 399-561 (615)
35 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.8E-06 8.2E-11 61.4 13.1 126 13-141 169-295 (395)
36 PRK14574 hmsH outer membrane p 98.6 5.4E-06 1.2E-10 66.0 14.5 162 2-164 316-503 (822)
37 PF01535 PPR: PPR repeat; Int 98.5 1.3E-07 2.9E-12 43.3 3.4 31 80-110 1-31 (31)
38 PRK10049 pgaA outer membrane p 98.5 5.5E-06 1.2E-10 66.0 14.0 144 19-163 278-445 (765)
39 PRK09782 bacteriophage N4 rece 98.5 4.8E-06 1E-10 67.5 13.8 151 10-164 506-662 (987)
40 PF06239 ECSIT: Evolutionarily 98.5 1.3E-06 2.7E-11 58.1 8.7 98 32-129 33-153 (228)
41 PRK12370 invasion protein regu 98.5 8.1E-06 1.8E-10 62.7 13.6 135 26-164 317-460 (553)
42 KOG4318 Bicoid mRNA stability 98.5 2.3E-07 4.9E-12 72.2 4.7 88 66-161 12-99 (1088)
43 PRK10747 putative protoheme IX 98.3 5.2E-05 1.1E-09 56.0 14.2 143 17-164 233-380 (398)
44 PRK10049 pgaA outer membrane p 98.3 3.7E-05 7.9E-10 61.4 14.2 150 10-162 12-167 (765)
45 PF10037 MRP-S27: Mitochondria 98.3 8.3E-06 1.8E-10 60.1 9.7 117 42-158 64-186 (429)
46 TIGR03302 OM_YfiO outer membra 98.3 8.4E-05 1.8E-09 50.8 13.3 149 12-164 32-222 (235)
47 PRK11447 cellulose synthase su 98.3 4.3E-05 9.4E-10 63.5 13.7 83 80-163 604-689 (1157)
48 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3E-05 6.4E-10 56.8 10.9 115 45-164 170-287 (395)
49 PRK15359 type III secretion sy 98.2 6.7E-05 1.5E-09 47.5 11.3 90 50-141 30-119 (144)
50 PRK11447 cellulose synthase su 98.2 4.1E-05 8.8E-10 63.7 12.9 144 18-164 578-730 (1157)
51 PF04733 Coatomer_E: Coatomer 98.2 2.5E-05 5.3E-10 55.2 10.1 135 21-161 110-251 (290)
52 PRK15359 type III secretion sy 98.2 0.00013 2.9E-09 46.2 12.0 102 7-109 18-122 (144)
53 PRK10747 putative protoheme IX 98.2 0.00017 3.7E-09 53.3 14.1 140 23-163 128-281 (398)
54 KOG1840 Kinesin light chain [C 98.2 6.9E-05 1.5E-09 56.6 11.7 152 13-164 283-469 (508)
55 COG3071 HemY Uncharacterized e 98.1 0.00021 4.5E-09 51.5 13.2 145 14-164 230-380 (400)
56 COG5010 TadD Flp pilus assembl 98.1 0.00055 1.2E-08 46.8 14.1 118 45-164 101-221 (257)
57 TIGR00540 hemY_coli hemY prote 98.1 0.00033 7.2E-09 52.0 14.2 134 28-164 244-389 (409)
58 PF04733 Coatomer_E: Coatomer 98.1 6.3E-05 1.4E-09 53.2 9.7 129 11-141 129-263 (290)
59 PRK14574 hmsH outer membrane p 98.1 0.0002 4.3E-09 57.4 13.3 139 18-159 73-217 (822)
60 PF08579 RPM2: Mitochondrial r 98.1 5.1E-05 1.1E-09 45.3 7.5 77 82-158 28-117 (120)
61 PF06239 ECSIT: Evolutionarily 98.1 6.4E-05 1.4E-09 50.2 8.8 101 8-108 42-168 (228)
62 TIGR00540 hemY_coli hemY prote 98.1 0.00044 9.6E-09 51.3 14.3 155 9-164 113-282 (409)
63 PRK11189 lipoprotein NlpI; Pro 98.0 0.0004 8.7E-09 49.3 13.4 122 14-139 65-190 (296)
64 TIGR02552 LcrH_SycD type III s 98.0 0.00034 7.3E-09 43.5 11.6 88 51-140 24-111 (135)
65 KOG1129 TPR repeat-containing 98.0 4.7E-05 1E-09 53.9 8.1 120 19-140 229-350 (478)
66 KOG1155 Anaphase-promoting com 98.0 4.2E-05 9.1E-10 56.2 8.0 149 14-164 331-485 (559)
67 KOG1126 DNA-binding cell divis 98.0 8.2E-05 1.8E-09 56.6 9.3 151 11-164 419-610 (638)
68 TIGR02552 LcrH_SycD type III s 98.0 0.00046 9.9E-09 42.8 11.3 105 14-121 18-125 (135)
69 KOG2003 TPR repeat-containing 98.0 8.9E-05 1.9E-09 54.7 8.8 135 24-159 535-708 (840)
70 PRK10370 formate-dependent nit 98.0 0.00068 1.5E-08 45.3 12.5 97 42-141 71-171 (198)
71 PF04840 Vps16_C: Vps16, C-ter 97.9 0.00031 6.7E-09 50.3 11.1 111 14-140 178-288 (319)
72 PRK11189 lipoprotein NlpI; Pro 97.9 0.00059 1.3E-08 48.5 12.4 93 12-106 97-192 (296)
73 cd00189 TPR Tetratricopeptide 97.9 0.00027 5.9E-09 40.0 8.9 90 49-140 5-94 (100)
74 PF09976 TPR_21: Tetratricopep 97.9 0.00087 1.9E-08 42.4 11.4 123 14-139 13-143 (145)
75 PF05843 Suf: Suppressor of fo 97.9 8.5E-05 1.8E-09 52.3 7.2 126 14-141 2-134 (280)
76 PRK15179 Vi polysaccharide bio 97.9 0.0016 3.5E-08 51.5 14.6 130 9-141 82-215 (694)
77 CHL00033 ycf3 photosystem I as 97.8 0.0014 3.1E-08 42.4 12.3 118 44-162 35-168 (168)
78 COG5010 TadD Flp pilus assembl 97.8 0.0023 4.9E-08 43.9 13.2 129 12-143 99-231 (257)
79 PF09976 TPR_21: Tetratricopep 97.8 0.00063 1.4E-08 43.0 10.2 117 45-164 13-137 (145)
80 PRK10370 formate-dependent nit 97.8 0.0013 2.9E-08 43.9 12.0 111 10-123 70-186 (198)
81 COG2956 Predicted N-acetylgluc 97.8 0.00037 8E-09 49.3 9.3 142 20-163 114-267 (389)
82 KOG4626 O-linked N-acetylgluco 97.8 0.0006 1.3E-08 52.3 11.0 123 14-140 287-414 (966)
83 KOG1126 DNA-binding cell divis 97.8 0.00012 2.6E-09 55.8 6.9 144 14-163 354-541 (638)
84 PRK02603 photosystem I assembl 97.8 0.002 4.4E-08 41.9 12.0 116 44-160 35-166 (172)
85 PF12895 Apc3: Anaphase-promot 97.8 4.7E-05 1E-09 43.5 3.8 81 57-139 2-83 (84)
86 KOG1155 Anaphase-promoting com 97.8 0.0004 8.7E-09 51.3 9.2 156 4-164 253-451 (559)
87 KOG3081 Vesicle coat complex C 97.7 0.003 6.6E-08 43.6 12.4 118 20-143 115-236 (299)
88 KOG2003 TPR repeat-containing 97.7 0.0018 3.9E-08 48.1 12.0 128 9-140 588-719 (840)
89 KOG4626 O-linked N-acetylgluco 97.7 0.00021 4.5E-09 54.7 7.3 152 9-164 315-475 (966)
90 cd05804 StaR_like StaR_like; a 97.7 0.00081 1.8E-08 48.7 10.4 89 52-141 122-213 (355)
91 cd00189 TPR Tetratricopeptide 97.7 0.0008 1.7E-08 38.0 8.5 92 16-108 3-97 (100)
92 PF12921 ATP13: Mitochondrial 97.7 0.0011 2.5E-08 40.9 9.2 83 44-126 2-100 (126)
93 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0035 7.6E-08 37.7 11.5 89 20-108 9-105 (119)
94 PRK15179 Vi polysaccharide bio 97.7 0.0018 4E-08 51.1 12.3 119 43-164 85-207 (694)
95 COG4783 Putative Zn-dependent 97.7 0.0056 1.2E-07 45.6 13.9 115 45-163 308-426 (484)
96 COG3063 PilF Tfp pilus assembl 97.7 0.0028 6E-08 42.9 11.4 140 20-161 42-189 (250)
97 PF14559 TPR_19: Tetratricopep 97.6 0.00036 7.8E-09 37.9 6.0 50 91-141 3-52 (68)
98 COG3063 PilF Tfp pilus assembl 97.6 0.0049 1.1E-07 41.7 12.2 134 9-143 64-202 (250)
99 PF12569 NARP1: NMDA receptor- 97.6 0.0043 9.3E-08 47.4 13.0 136 3-144 136-292 (517)
100 KOG1129 TPR repeat-containing 97.6 0.00091 2E-08 47.6 8.6 129 9-139 252-383 (478)
101 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0036 7.8E-08 37.6 10.4 94 46-141 4-103 (119)
102 KOG1840 Kinesin light chain [C 97.5 0.0034 7.4E-08 47.7 11.0 127 15-141 327-477 (508)
103 PF03704 BTAD: Bacterial trans 97.5 0.0017 3.7E-08 41.0 8.2 72 46-118 64-140 (146)
104 PLN03088 SGT1, suppressor of 97.4 0.0043 9.3E-08 45.3 11.2 98 21-121 10-110 (356)
105 KOG1070 rRNA processing protei 97.4 0.0073 1.6E-07 50.5 13.0 122 8-133 1453-1583(1710)
106 PF12569 NARP1: NMDA receptor- 97.4 0.0045 9.8E-08 47.3 11.4 131 10-141 189-332 (517)
107 PF12688 TPR_5: Tetratrico pep 97.4 0.0058 1.3E-07 37.4 9.9 104 52-157 9-118 (120)
108 TIGR03302 OM_YfiO outer membra 97.4 0.0081 1.8E-07 41.0 11.7 126 14-141 71-230 (235)
109 cd05804 StaR_like StaR_like; a 97.4 0.016 3.5E-07 42.0 13.7 139 22-164 52-205 (355)
110 PF12921 ATP13: Mitochondrial 97.4 0.0053 1.1E-07 37.9 9.2 84 12-95 1-104 (126)
111 KOG2076 RNA polymerase III tra 97.3 0.0088 1.9E-07 47.6 12.2 134 9-144 374-513 (895)
112 KOG3941 Intermediate in Toll s 97.3 0.0029 6.3E-08 44.3 8.5 99 32-130 53-174 (406)
113 KOG1070 rRNA processing protei 97.3 0.006 1.3E-07 50.9 11.4 145 14-161 1498-1650(1710)
114 PF05843 Suf: Suppressor of fo 97.3 0.0048 1E-07 43.5 9.6 115 45-161 2-123 (280)
115 KOG4570 Uncharacterized conser 97.3 0.0035 7.6E-08 44.4 8.4 103 6-109 57-165 (418)
116 COG4783 Putative Zn-dependent 97.2 0.011 2.5E-07 44.0 11.2 115 23-140 316-434 (484)
117 KOG1173 Anaphase-promoting com 97.2 0.0062 1.3E-07 46.2 9.9 134 23-157 390-534 (611)
118 KOG1173 Anaphase-promoting com 97.2 0.0044 9.5E-08 47.0 9.0 153 10-164 309-508 (611)
119 KOG3081 Vesicle coat complex C 97.2 0.0067 1.5E-07 42.0 9.2 121 20-141 144-269 (299)
120 PF12895 Apc3: Anaphase-promot 97.2 0.00052 1.1E-08 39.1 3.4 76 26-104 2-83 (84)
121 PF14559 TPR_19: Tetratricopep 97.2 0.0014 3.1E-08 35.5 5.0 63 55-120 2-64 (68)
122 PLN03088 SGT1, suppressor of 97.1 0.015 3.2E-07 42.6 11.1 88 52-141 10-97 (356)
123 PF03704 BTAD: Bacterial trans 97.1 0.0023 4.9E-08 40.5 5.9 67 15-81 64-138 (146)
124 CHL00033 ycf3 photosystem I as 97.1 0.023 4.9E-07 36.8 10.7 92 13-105 35-139 (168)
125 KOG2047 mRNA splicing factor [ 97.1 0.015 3.2E-07 45.2 10.8 140 16-157 141-293 (835)
126 KOG3785 Uncharacterized conser 97.0 0.014 3.1E-07 42.3 9.3 22 19-40 291-312 (557)
127 COG2956 Predicted N-acetylgluc 97.0 0.022 4.7E-07 40.7 10.1 125 15-141 143-276 (389)
128 PF04840 Vps16_C: Vps16, C-ter 97.0 0.052 1.1E-06 39.1 12.2 82 77-164 175-256 (319)
129 COG3071 HemY Uncharacterized e 96.9 0.042 9.2E-07 40.1 11.3 127 9-141 259-388 (400)
130 KOG1128 Uncharacterized conser 96.8 0.029 6.2E-07 44.0 10.2 141 15-163 400-571 (777)
131 KOG3616 Selective LIM binding 96.8 0.018 4E-07 45.6 9.1 113 21-144 740-854 (1636)
132 KOG0553 TPR repeat-containing 96.7 0.035 7.7E-07 39.1 9.6 98 54-153 91-190 (304)
133 PF13432 TPR_16: Tetratricopep 96.7 0.0056 1.2E-07 32.8 4.7 55 53-108 6-60 (65)
134 PF13432 TPR_16: Tetratricopep 96.7 0.011 2.3E-07 31.7 5.9 53 87-140 5-57 (65)
135 KOG3060 Uncharacterized conser 96.7 0.097 2.1E-06 36.3 11.3 128 9-141 47-181 (289)
136 PRK02603 photosystem I assembl 96.7 0.08 1.7E-06 34.4 12.0 80 13-94 35-121 (172)
137 PRK10153 DNA-binding transcrip 96.6 0.11 2.4E-06 40.1 12.5 139 7-147 331-488 (517)
138 PF13414 TPR_11: TPR repeat; P 96.6 0.011 2.3E-07 32.1 5.4 61 45-106 4-65 (69)
139 KOG1915 Cell cycle control pro 96.6 0.051 1.1E-06 41.0 10.0 78 58-139 155-232 (677)
140 KOG2076 RNA polymerase III tra 96.6 0.14 3.1E-06 41.2 12.8 116 22-141 149-268 (895)
141 KOG0495 HAT repeat protein [RN 96.6 0.13 2.9E-06 40.4 12.3 124 16-141 519-645 (913)
142 PRK15363 pathogenicity island 96.5 0.053 1.1E-06 34.7 8.6 86 53-141 44-130 (157)
143 PRK15363 pathogenicity island 96.5 0.055 1.2E-06 34.7 8.5 89 19-108 41-132 (157)
144 KOG2002 TPR-containing nuclear 96.5 0.014 3E-07 47.0 6.9 113 28-141 627-743 (1018)
145 KOG2047 mRNA splicing factor [ 96.4 0.078 1.7E-06 41.4 10.2 147 14-164 103-267 (835)
146 KOG1915 Cell cycle control pro 96.3 0.15 3.3E-06 38.6 11.1 120 25-148 85-210 (677)
147 PF13414 TPR_11: TPR repeat; P 96.3 0.034 7.4E-07 30.0 6.3 59 80-139 4-63 (69)
148 PLN02789 farnesyltranstransfer 96.3 0.26 5.6E-06 35.6 14.1 143 14-158 38-189 (320)
149 KOG0985 Vesicle coat protein c 96.3 0.18 4E-06 41.6 12.0 140 12-162 1103-1266(1666)
150 PRK10803 tol-pal system protei 96.2 0.15 3.2E-06 35.8 10.4 95 45-141 144-244 (263)
151 KOG4340 Uncharacterized conser 96.2 0.098 2.1E-06 37.3 9.3 115 26-142 125-269 (459)
152 KOG1914 mRNA cleavage and poly 96.2 0.2 4.3E-06 38.5 11.4 115 44-160 366-487 (656)
153 smart00299 CLH Clathrin heavy 96.2 0.14 3.1E-06 32.0 12.8 125 16-158 10-138 (140)
154 KOG0547 Translocase of outer m 96.2 0.053 1.2E-06 40.9 8.3 22 117-138 540-561 (606)
155 KOG1128 Uncharacterized conser 96.2 0.024 5.2E-07 44.4 6.7 98 56-156 531-634 (777)
156 KOG3616 Selective LIM binding 96.2 0.03 6.5E-07 44.5 7.3 100 54-164 742-843 (1636)
157 PF13424 TPR_12: Tetratricopep 96.1 0.029 6.3E-07 31.2 5.5 61 46-106 7-73 (78)
158 KOG2002 TPR-containing nuclear 96.0 0.26 5.6E-06 40.2 11.8 95 12-108 269-371 (1018)
159 KOG1174 Anaphase-promoting com 96.0 0.21 4.5E-06 37.2 10.4 32 9-40 228-259 (564)
160 PF13371 TPR_9: Tetratricopept 96.0 0.1 2.2E-06 28.4 7.7 56 52-108 3-58 (73)
161 PF13371 TPR_9: Tetratricopept 96.0 0.027 5.8E-07 30.8 4.8 55 86-141 2-56 (73)
162 PF13424 TPR_12: Tetratricopep 96.0 0.023 5.1E-07 31.6 4.5 59 13-71 5-73 (78)
163 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.38 8.2E-06 36.2 11.5 62 12-73 74-141 (453)
164 KOG1914 mRNA cleavage and poly 95.9 0.28 6.2E-06 37.7 10.8 129 8-140 362-498 (656)
165 KOG0547 Translocase of outer m 95.9 0.22 4.7E-06 37.8 10.1 123 16-141 363-489 (606)
166 KOG2796 Uncharacterized conser 95.9 0.081 1.8E-06 37.0 7.4 96 46-141 179-279 (366)
167 KOG1125 TPR repeat-containing 95.8 0.38 8.3E-06 37.0 11.5 130 6-137 423-565 (579)
168 PRK14720 transcript cleavage f 95.7 0.36 7.8E-06 39.7 11.6 139 15-156 118-268 (906)
169 KOG3785 Uncharacterized conser 95.7 0.11 2.3E-06 38.0 7.8 91 51-143 366-457 (557)
170 KOG2053 Mitochondrial inherita 95.7 0.15 3.2E-06 41.1 9.2 103 26-131 22-127 (932)
171 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.37 8.1E-06 36.2 10.8 99 43-143 74-195 (453)
172 PRK14720 transcript cleavage f 95.7 0.33 7.1E-06 39.9 11.2 126 12-141 30-176 (906)
173 KOG0495 HAT repeat protein [RN 95.6 0.62 1.3E-05 36.9 12.0 160 3-164 469-637 (913)
174 PF00637 Clathrin: Region in C 95.6 0.028 6.1E-07 35.3 4.4 80 85-164 13-102 (143)
175 KOG1156 N-terminal acetyltrans 95.6 0.37 8E-06 37.7 10.7 131 10-141 366-509 (700)
176 PF00637 Clathrin: Region in C 95.6 0.015 3.2E-07 36.5 3.0 125 19-161 13-141 (143)
177 PRK10803 tol-pal system protei 95.6 0.32 7E-06 34.1 9.8 95 13-109 143-247 (263)
178 COG3629 DnrI DNA-binding trans 95.5 0.34 7.4E-06 34.2 9.7 80 45-125 154-238 (280)
179 KOG1125 TPR repeat-containing 95.5 0.049 1.1E-06 41.6 5.8 105 58-163 408-516 (579)
180 KOG2280 Vacuolar assembly/sort 95.5 0.28 6E-06 39.0 9.8 115 8-137 679-793 (829)
181 PF14938 SNAP: Soluble NSF att 95.4 0.17 3.6E-06 35.8 8.1 132 26-157 87-247 (282)
182 PRK10866 outer membrane biogen 95.3 0.63 1.4E-05 32.3 11.9 143 20-164 39-231 (243)
183 PF13170 DUF4003: Protein of u 95.1 0.16 3.5E-06 36.2 7.3 122 2-126 86-228 (297)
184 PF12688 TPR_5: Tetratrico pep 95.1 0.12 2.5E-06 31.7 5.7 80 85-164 7-94 (120)
185 COG5107 RNA14 Pre-mRNA 3'-end 95.1 0.45 9.7E-06 36.0 9.4 115 45-161 398-518 (660)
186 PF10602 RPN7: 26S proteasome 95.0 0.61 1.3E-05 30.7 10.2 97 45-141 37-140 (177)
187 PRK10153 DNA-binding transcrip 94.9 0.47 1E-05 36.7 9.7 122 41-164 334-472 (517)
188 KOG3941 Intermediate in Toll s 94.9 0.18 3.9E-06 35.7 6.8 98 10-107 64-187 (406)
189 cd00923 Cyt_c_Oxidase_Va Cytoc 94.9 0.36 7.8E-06 28.3 6.9 62 59-122 22-84 (103)
190 KOG2053 Mitochondrial inherita 94.7 1.1 2.5E-05 36.4 11.3 113 11-127 40-157 (932)
191 PF07035 Mic1: Colon cancer-as 94.6 0.74 1.6E-05 30.0 11.0 123 4-138 20-144 (167)
192 KOG1127 TPR repeat-containing 94.6 0.21 4.6E-06 41.0 7.2 128 13-141 492-623 (1238)
193 KOG3060 Uncharacterized conser 94.5 1.1 2.4E-05 31.3 10.9 116 24-141 97-218 (289)
194 COG4235 Cytochrome c biogenesi 94.5 1 2.2E-05 31.9 9.6 111 42-154 154-269 (287)
195 KOG4162 Predicted calmodulin-b 94.4 1.1 2.4E-05 35.9 10.5 70 3-72 313-385 (799)
196 PF02284 COX5A: Cytochrome c o 94.4 0.39 8.5E-06 28.4 6.3 61 62-123 28-88 (108)
197 PF07079 DUF1347: Protein of u 94.2 0.96 2.1E-05 34.2 9.4 130 24-157 17-179 (549)
198 PF04053 Coatomer_WDAD: Coatom 94.2 1.4 3.1E-05 33.4 10.6 112 15-141 297-429 (443)
199 COG3629 DnrI DNA-binding trans 94.2 0.56 1.2E-05 33.2 7.9 75 14-88 154-236 (280)
200 PF13281 DUF4071: Domain of un 94.1 1.8 3.8E-05 32.1 11.0 78 14-91 142-229 (374)
201 PF09205 DUF1955: Domain of un 94.0 0.93 2E-05 28.5 8.5 115 26-141 15-147 (161)
202 KOG1174 Anaphase-promoting com 93.9 0.77 1.7E-05 34.4 8.4 43 118-160 442-486 (564)
203 smart00299 CLH Clathrin heavy 93.9 0.94 2E-05 28.2 8.7 89 45-141 8-96 (140)
204 COG4700 Uncharacterized protei 93.8 1.3 2.8E-05 29.6 9.9 95 11-107 87-188 (251)
205 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.64 1.4E-05 27.3 6.3 60 94-153 22-84 (103)
206 PF13762 MNE1: Mitochondrial s 93.7 1.1 2.4E-05 28.4 8.8 115 9-131 10-132 (145)
207 PF14938 SNAP: Soluble NSF att 93.7 1.8 3.9E-05 30.7 11.1 132 15-146 116-269 (282)
208 KOG0985 Vesicle coat protein c 93.5 1.3 2.9E-05 37.0 9.7 85 12-105 1132-1220(1666)
209 PF02284 COX5A: Cytochrome c o 93.4 0.24 5.1E-06 29.3 4.2 58 97-154 28-88 (108)
210 PF10300 DUF3808: Protein of u 93.4 1.6 3.4E-05 33.5 9.7 126 15-141 231-374 (468)
211 KOG2376 Signal recognition par 93.3 3.1 6.8E-05 32.6 12.1 142 15-158 341-505 (652)
212 PRK15331 chaperone protein Sic 93.3 1 2.2E-05 29.2 7.3 84 55-141 48-132 (165)
213 KOG4340 Uncharacterized conser 93.2 0.79 1.7E-05 32.9 7.2 53 23-76 154-210 (459)
214 PF07163 Pex26: Pex26 protein; 93.2 1.4 3.1E-05 31.1 8.4 90 47-138 86-182 (309)
215 PLN02789 farnesyltranstransfer 93.1 2.5 5.3E-05 30.7 13.8 141 15-157 73-229 (320)
216 PRK15331 chaperone protein Sic 93.1 1.3 2.8E-05 28.8 7.6 85 23-108 47-134 (165)
217 PF13762 MNE1: Mitochondrial s 93.1 1.4 3.1E-05 27.9 9.4 93 4-96 28-132 (145)
218 PF13512 TPR_18: Tetratricopep 92.8 1.6 3.4E-05 27.7 8.6 76 20-95 17-98 (142)
219 PRK04841 transcriptional regul 92.8 4.3 9.3E-05 33.6 12.1 149 15-163 533-709 (903)
220 KOG0543 FKBP-type peptidyl-pro 92.7 2.1 4.6E-05 31.7 9.1 117 22-141 217-353 (397)
221 PF13176 TPR_7: Tetratricopept 92.7 0.16 3.4E-06 23.7 2.4 24 116-139 1-24 (36)
222 PF13176 TPR_7: Tetratricopept 92.5 0.51 1.1E-05 21.9 4.1 22 48-69 3-24 (36)
223 KOG0553 TPR repeat-containing 92.3 1.4 2.9E-05 31.5 7.4 97 23-123 91-191 (304)
224 COG5107 RNA14 Pre-mRNA 3'-end 92.3 2.8 6.1E-05 32.0 9.3 125 13-141 397-529 (660)
225 PF10602 RPN7: 26S proteasome 92.3 1.6 3.5E-05 28.7 7.5 94 13-106 36-140 (177)
226 PRK04841 transcriptional regul 92.1 3.1 6.8E-05 34.4 10.6 126 16-141 494-639 (903)
227 KOG2796 Uncharacterized conser 91.9 3.3 7.2E-05 29.3 9.4 121 19-142 183-314 (366)
228 COG1729 Uncharacterized protei 91.5 3.1 6.7E-05 29.2 8.4 93 46-141 144-242 (262)
229 PF13929 mRNA_stabil: mRNA sta 91.5 3.8 8.3E-05 29.2 10.6 132 8-139 107-263 (292)
230 KOG2280 Vacuolar assembly/sort 91.3 1.1 2.5E-05 35.8 6.7 104 46-164 686-789 (829)
231 KOG4162 Predicted calmodulin-b 91.1 7.1 0.00015 31.6 12.3 123 15-140 652-780 (799)
232 KOG1156 N-terminal acetyltrans 90.8 5.6 0.00012 31.6 9.8 97 42-141 367-466 (700)
233 PF09613 HrpB1_HrpK: Bacterial 90.5 3.3 7.2E-05 26.8 11.8 114 14-135 8-130 (160)
234 COG4235 Cytochrome c biogenesi 90.5 4.9 0.00011 28.7 10.4 110 10-122 153-268 (287)
235 COG4649 Uncharacterized protei 90.5 3.7 8E-05 27.2 7.8 120 23-142 68-195 (221)
236 COG1729 Uncharacterized protei 90.4 4.7 0.0001 28.3 8.7 91 15-108 144-244 (262)
237 PF13428 TPR_14: Tetratricopep 90.3 1.2 2.7E-05 21.6 5.0 23 50-72 7-29 (44)
238 KOG1538 Uncharacterized conser 90.2 2 4.4E-05 34.2 7.1 36 2-40 624-659 (1081)
239 PF04053 Coatomer_WDAD: Coatom 90.1 7.1 0.00015 29.8 10.2 84 10-104 344-427 (443)
240 PF04184 ST7: ST7 protein; In 90.0 4.1 8.8E-05 31.4 8.4 78 50-127 265-344 (539)
241 TIGR03504 FimV_Cterm FimV C-te 89.9 1.1 2.4E-05 22.1 3.8 24 85-108 5-28 (44)
242 KOG2114 Vacuolar assembly/sort 89.7 8.7 0.00019 31.6 10.3 117 17-141 338-458 (933)
243 PF13374 TPR_10: Tetratricopep 89.2 1.4 3E-05 20.6 4.3 25 46-70 4-28 (42)
244 PF13428 TPR_14: Tetratricopep 89.2 1.4 3.1E-05 21.3 4.0 28 82-109 4-31 (44)
245 KOG0548 Molecular co-chaperone 89.2 5.8 0.00013 30.7 8.7 100 22-124 11-114 (539)
246 KOG4570 Uncharacterized conser 88.8 2 4.4E-05 31.1 5.8 98 42-141 62-162 (418)
247 PF09205 DUF1955: Domain of un 88.7 4.3 9.4E-05 25.6 8.8 67 43-110 85-151 (161)
248 PF11848 DUF3368: Domain of un 88.7 1.9 4.2E-05 21.6 4.7 33 90-122 13-45 (48)
249 PF13374 TPR_10: Tetratricopep 88.7 1.1 2.5E-05 20.9 3.5 28 80-107 3-30 (42)
250 KOG3617 WD40 and TPR repeat-co 88.6 13 0.00028 31.0 11.0 118 11-141 755-885 (1416)
251 PF13929 mRNA_stabil: mRNA sta 88.2 7.5 0.00016 27.8 11.1 116 11-126 162-290 (292)
252 TIGR03504 FimV_Cterm FimV C-te 88.2 1.4 3E-05 21.8 3.5 25 50-74 5-29 (44)
253 COG4700 Uncharacterized protei 87.8 6.5 0.00014 26.5 13.4 99 41-141 86-187 (251)
254 KOG4077 Cytochrome c oxidase, 87.3 5.2 0.00011 24.9 6.5 60 62-122 67-126 (149)
255 KOG0548 Molecular co-chaperone 87.3 5.5 0.00012 30.8 7.6 100 53-155 11-114 (539)
256 TIGR02561 HrpB1_HrpK type III 87.3 5.8 0.00013 25.4 10.2 96 14-114 8-112 (153)
257 KOG2376 Signal recognition par 87.1 13 0.00029 29.4 11.4 127 13-141 376-518 (652)
258 PF13170 DUF4003: Protein of u 86.9 4.2 9.1E-05 29.2 6.6 82 42-123 58-150 (297)
259 PF11207 DUF2989: Protein of u 86.7 2.4 5.2E-05 28.5 4.9 68 96-164 123-197 (203)
260 KOG3617 WD40 and TPR repeat-co 86.6 11 0.00024 31.3 9.2 80 47-141 915-994 (1416)
261 PF11848 DUF3368: Domain of un 86.6 2.8 6E-05 21.0 4.3 35 53-87 11-45 (48)
262 KOG0543 FKBP-type peptidyl-pro 86.4 8.1 0.00018 28.9 7.9 88 53-141 217-318 (397)
263 PF13281 DUF4071: Domain of un 86.3 12 0.00026 27.9 9.3 92 48-139 145-251 (374)
264 COG4455 ImpE Protein of avirul 86.0 4.4 9.5E-05 27.9 5.9 77 47-124 4-82 (273)
265 PF11663 Toxin_YhaV: Toxin wit 85.7 1.5 3.2E-05 27.5 3.3 31 56-88 107-137 (140)
266 COG0735 Fur Fe2+/Zn2+ uptake r 85.6 7.1 0.00015 24.8 7.4 66 65-131 7-72 (145)
267 KOG4555 TPR repeat-containing 85.4 7.1 0.00015 24.6 8.7 87 53-140 52-141 (175)
268 cd08819 CARD_MDA5_2 Caspase ac 85.3 5.3 0.00011 23.0 5.5 61 99-161 22-82 (88)
269 PF13431 TPR_17: Tetratricopep 85.2 1.7 3.6E-05 19.9 2.7 22 113-134 12-33 (34)
270 PRK10866 outer membrane biogen 84.6 11 0.00024 26.1 10.4 62 45-109 34-99 (243)
271 PF11207 DUF2989: Protein of u 84.1 11 0.00023 25.5 7.8 73 61-134 123-198 (203)
272 PF07721 TPR_4: Tetratricopept 84.1 2.2 4.7E-05 18.1 2.7 20 119-138 6-25 (26)
273 KOG4648 Uncharacterized conser 84.1 4.9 0.00011 29.6 5.8 70 53-132 106-176 (536)
274 PF00515 TPR_1: Tetratricopept 83.6 2.9 6.3E-05 18.6 4.3 27 46-72 3-29 (34)
275 COG4105 ComL DNA uptake lipopr 83.5 13 0.00028 26.1 11.8 149 14-164 36-223 (254)
276 TIGR02561 HrpB1_HrpK type III 83.1 9.8 0.00021 24.4 7.1 51 55-109 21-74 (153)
277 COG3947 Response regulator con 82.9 15 0.00033 26.5 7.8 58 47-105 282-339 (361)
278 TIGR02508 type_III_yscG type I 82.8 7.9 0.00017 23.1 5.5 57 96-153 22-78 (115)
279 PF13525 YfiO: Outer membrane 82.5 12 0.00026 25.0 8.5 141 20-162 12-195 (203)
280 KOG0550 Molecular chaperone (D 82.2 11 0.00023 28.5 7.0 130 11-142 166-315 (486)
281 COG3118 Thioredoxin domain-con 81.9 17 0.00036 26.2 10.9 116 23-141 144-263 (304)
282 KOG0276 Vesicle coat complex C 81.8 25 0.00053 28.2 9.0 85 42-141 664-748 (794)
283 PF04184 ST7: ST7 protein; In 81.8 18 0.00038 28.1 8.1 76 85-160 265-346 (539)
284 PF11663 Toxin_YhaV: Toxin wit 81.3 2.5 5.4E-05 26.5 3.1 35 88-124 104-138 (140)
285 cd08326 CARD_CASP9 Caspase act 81.1 2.9 6.3E-05 23.8 3.2 36 126-161 42-77 (84)
286 KOG4077 Cytochrome c oxidase, 80.6 3.9 8.4E-05 25.5 3.7 45 97-141 67-111 (149)
287 PRK10564 maltose regulon perip 80.4 5.4 0.00012 28.6 4.9 35 82-116 260-294 (303)
288 PF11846 DUF3366: Domain of un 80.4 14 0.00031 24.4 6.8 53 56-108 120-173 (193)
289 PRK10564 maltose regulon perip 80.4 3.6 7.9E-05 29.5 4.1 44 42-85 254-298 (303)
290 TIGR02508 type_III_yscG type I 80.2 10 0.00022 22.6 7.4 53 20-74 46-98 (115)
291 COG1747 Uncharacterized N-term 80.1 18 0.00038 28.4 7.7 94 43-141 65-158 (711)
292 PF11846 DUF3366: Domain of un 79.7 9.4 0.0002 25.3 5.8 51 91-141 120-171 (193)
293 KOG1538 Uncharacterized conser 79.3 14 0.0003 29.8 7.1 108 23-141 726-844 (1081)
294 cd07229 Pat_TGL3_like Triacylg 78.4 26 0.00057 26.4 8.5 25 136-160 228-252 (391)
295 KOG0624 dsRNA-activated protei 78.2 26 0.00055 26.1 10.0 118 22-141 115-250 (504)
296 COG3947 Response regulator con 78.1 8.7 0.00019 27.7 5.3 53 82-135 282-334 (361)
297 PF14689 SPOB_a: Sensor_kinase 78.0 4.8 0.0001 21.4 3.2 23 84-106 28-50 (62)
298 PF10579 Rapsyn_N: Rapsyn N-te 77.9 8.4 0.00018 21.8 4.2 44 57-100 19-64 (80)
299 PF10300 DUF3808: Protein of u 77.5 31 0.00066 26.7 10.7 126 16-143 191-334 (468)
300 PF10366 Vps39_1: Vacuolar sor 77.1 10 0.00022 22.7 4.9 26 116-141 41-66 (108)
301 PF13512 TPR_18: Tetratricopep 76.9 16 0.00035 23.2 7.6 81 43-126 10-94 (142)
302 PF12796 Ank_2: Ankyrin repeat 76.2 11 0.00024 21.0 5.3 52 22-79 3-54 (89)
303 PF13174 TPR_6: Tetratricopept 75.6 5.7 0.00012 17.2 2.8 23 86-108 7-29 (33)
304 KOG4567 GTPase-activating prot 75.5 29 0.00063 25.3 9.1 89 63-156 262-360 (370)
305 KOG2908 26S proteasome regulat 74.7 32 0.00069 25.4 8.2 79 18-96 80-174 (380)
306 PF09454 Vps23_core: Vps23 cor 74.3 12 0.00025 20.2 4.9 49 76-125 5-53 (65)
307 PF01475 FUR: Ferric uptake re 73.8 14 0.0003 22.3 5.0 50 83-132 11-60 (120)
308 cd07153 Fur_like Ferric uptake 73.7 15 0.00034 21.9 5.2 43 52-94 8-50 (116)
309 KOG0624 dsRNA-activated protei 73.6 35 0.00076 25.5 7.7 127 13-141 189-334 (504)
310 COG5108 RPO41 Mitochondrial DN 73.2 23 0.0005 28.8 6.9 78 49-126 33-115 (1117)
311 PRK11639 zinc uptake transcrip 72.4 24 0.00052 23.0 7.5 61 70-131 17-77 (169)
312 KOG4648 Uncharacterized conser 72.3 20 0.00044 26.6 6.0 77 22-106 106-185 (536)
313 COG4105 ComL DNA uptake lipopr 72.1 31 0.00068 24.2 7.7 82 42-125 33-117 (254)
314 KOG2041 WD40 repeat protein [G 71.9 38 0.00083 27.8 7.8 20 26-45 747-766 (1189)
315 COG5108 RPO41 Mitochondrial DN 71.8 35 0.00076 27.9 7.5 89 18-106 33-130 (1117)
316 COG3898 Uncharacterized membra 71.7 42 0.00091 25.5 11.9 49 24-72 131-216 (531)
317 PF13934 ELYS: Nuclear pore co 71.6 30 0.00065 23.8 9.6 100 16-126 79-184 (226)
318 COG4003 Uncharacterized protei 71.5 16 0.00035 20.7 4.6 35 84-119 36-70 (98)
319 KOG2610 Uncharacterized conser 71.5 39 0.00086 25.1 8.3 95 43-139 136-234 (491)
320 PHA02875 ankyrin repeat protei 71.4 16 0.00035 27.3 5.8 37 3-39 20-58 (413)
321 KOG1127 TPR repeat-containing 70.5 36 0.00079 29.0 7.6 61 43-106 595-657 (1238)
322 KOG0991 Replication factor C, 69.9 31 0.00067 24.3 6.2 57 34-92 229-285 (333)
323 PF12926 MOZART2: Mitotic-spin 69.4 19 0.00042 20.7 5.8 42 100-141 29-70 (88)
324 KOG0276 Vesicle coat complex C 69.1 58 0.0013 26.3 8.1 82 12-104 665-746 (794)
325 PF07035 Mic1: Colon cancer-as 68.8 30 0.00065 22.7 13.3 93 39-142 24-117 (167)
326 KOG1920 IkappaB kinase complex 68.4 50 0.0011 28.7 8.1 81 16-105 896-991 (1265)
327 cd08332 CARD_CASP2 Caspase act 68.0 8.4 0.00018 22.3 2.9 28 130-157 50-77 (90)
328 PF10155 DUF2363: Uncharacteri 67.4 27 0.00059 21.7 8.4 110 29-141 5-125 (126)
329 KOG2610 Uncharacterized conser 66.9 51 0.0011 24.6 7.6 84 57-141 116-202 (491)
330 PF13181 TPR_8: Tetratricopept 66.4 11 0.00023 16.6 4.1 25 47-71 4-28 (34)
331 PF02847 MA3: MA3 domain; Int 66.3 8.8 0.00019 22.8 2.9 64 48-113 6-71 (113)
332 KOG1464 COP9 signalosome, subu 66.1 47 0.001 23.9 8.4 135 7-141 20-172 (440)
333 KOG0403 Neoplastic transformat 65.9 25 0.00054 27.1 5.5 72 84-158 514-587 (645)
334 PRK09462 fur ferric uptake reg 65.5 32 0.00069 21.8 7.0 62 69-131 7-69 (148)
335 PRK14700 recombination factor 65.0 51 0.0011 23.9 8.0 63 49-111 128-198 (300)
336 KOG1585 Protein required for f 64.4 48 0.0011 23.5 8.0 23 117-139 193-215 (308)
337 COG4455 ImpE Protein of avirul 64.4 46 0.00099 23.2 8.4 74 15-88 3-81 (273)
338 PF09868 DUF2095: Uncharacteri 64.3 30 0.00066 21.1 5.4 38 84-122 66-103 (128)
339 KOG4334 Uncharacterized conser 64.1 6.3 0.00014 30.2 2.3 98 29-127 463-573 (650)
340 KOG3154 Uncharacterized conser 64.1 31 0.00066 23.7 5.2 54 18-71 152-207 (263)
341 PF11768 DUF3312: Protein of u 64.0 25 0.00054 27.6 5.4 21 125-145 505-525 (545)
342 smart00544 MA3 Domain in DAP-5 63.6 29 0.00062 20.6 5.2 62 47-110 5-68 (113)
343 PRK14958 DNA polymerase III su 63.2 66 0.0014 25.3 7.6 71 5-78 192-279 (509)
344 cd07153 Fur_like Ferric uptake 63.0 28 0.0006 20.8 4.7 47 85-131 6-52 (116)
345 PF08631 SPO22: Meiosis protei 62.5 53 0.0011 23.3 12.5 59 82-141 87-148 (278)
346 COG3898 Uncharacterized membra 62.2 69 0.0015 24.5 12.0 144 13-162 188-346 (531)
347 TIGR03581 EF_0839 conserved hy 61.8 46 0.00099 22.9 5.7 78 29-106 137-235 (236)
348 KOG0686 COP9 signalosome, subu 61.4 71 0.0015 24.4 7.3 60 14-73 151-216 (466)
349 PF13525 YfiO: Outer membrane 60.8 48 0.001 22.2 8.8 56 53-108 14-71 (203)
350 smart00638 LPD_N Lipoprotein N 60.3 84 0.0018 24.9 8.6 62 13-76 310-372 (574)
351 PF13934 ELYS: Nuclear pore co 60.2 54 0.0012 22.6 7.3 102 47-156 79-183 (226)
352 PF11768 DUF3312: Protein of u 60.0 86 0.0019 24.9 8.4 93 16-109 411-508 (545)
353 PF02607 B12-binding_2: B12 bi 59.2 26 0.00057 19.2 3.9 37 57-93 14-50 (79)
354 PF14669 Asp_Glu_race_2: Putat 59.1 41 0.00089 22.8 5.1 30 111-140 178-207 (233)
355 KOG4555 TPR repeat-containing 59.0 44 0.00096 21.2 9.2 88 22-109 52-145 (175)
356 PF07719 TPR_2: Tetratricopept 58.8 15 0.00033 15.9 4.3 22 50-71 7-28 (34)
357 PRK14963 DNA polymerase III su 58.7 84 0.0018 24.7 7.5 70 6-78 190-275 (504)
358 PF12069 DUF3549: Protein of u 58.3 74 0.0016 23.6 9.8 86 21-109 174-260 (340)
359 KOG2114 Vacuolar assembly/sort 57.2 61 0.0013 27.1 6.6 71 19-93 711-785 (933)
360 PF04034 DUF367: Domain of unk 56.5 46 0.001 20.7 6.1 52 18-69 71-124 (127)
361 PLN03025 replication factor C 56.3 75 0.0016 23.0 11.2 21 93-113 238-258 (319)
362 cd08819 CARD_MDA5_2 Caspase ac 56.1 38 0.00082 19.6 4.8 64 32-100 21-87 (88)
363 PF09613 HrpB1_HrpK: Bacterial 56.0 54 0.0012 21.3 10.7 72 51-126 17-89 (160)
364 PF04762 IKI3: IKI3 family; I 55.6 43 0.00094 28.5 5.8 29 45-73 813-843 (928)
365 PF02847 MA3: MA3 domain; Int 55.5 41 0.0009 19.9 5.3 62 16-77 5-70 (113)
366 KOG2063 Vacuolar assembly/sort 55.3 1.2E+02 0.0027 25.7 8.1 112 46-157 506-638 (877)
367 KOG0550 Molecular chaperone (D 55.2 41 0.00088 25.7 5.0 112 26-141 216-348 (486)
368 PF14669 Asp_Glu_race_2: Putat 55.0 65 0.0014 21.9 8.6 21 20-40 58-78 (233)
369 KOG1920 IkappaB kinase complex 54.5 1.4E+02 0.0031 26.2 8.4 107 47-162 896-1016(1265)
370 PRK14962 DNA polymerase III su 54.2 1E+02 0.0022 24.0 11.7 104 7-113 192-318 (472)
371 PRK10292 hypothetical protein; 53.2 35 0.00076 18.3 5.6 28 70-97 25-52 (69)
372 PF07575 Nucleopor_Nup85: Nup8 52.7 41 0.00089 26.7 5.1 75 32-108 393-467 (566)
373 PF12926 MOZART2: Mitotic-spin 52.6 44 0.00095 19.3 4.9 43 65-107 29-71 (88)
374 cd08323 CARD_APAF1 Caspase act 52.1 35 0.00077 19.6 3.6 19 91-109 40-58 (86)
375 TIGR01914 cas_Csa4 CRISPR-asso 50.8 1E+02 0.0022 22.9 6.4 27 96-122 323-349 (354)
376 PF04124 Dor1: Dor1-like famil 50.7 98 0.0021 22.8 6.7 23 84-106 111-133 (338)
377 PRK08691 DNA polymerase III su 50.7 1.3E+02 0.0027 25.0 7.4 18 58-75 259-276 (709)
378 PF09477 Type_III_YscG: Bacter 50.7 55 0.0012 19.9 6.5 90 58-154 20-109 (116)
379 PRK14951 DNA polymerase III su 50.3 1.2E+02 0.0027 24.5 7.3 21 58-78 264-284 (618)
380 KOG0890 Protein kinase of the 49.9 2.4E+02 0.0052 27.0 9.5 139 18-163 1388-1536(2382)
381 PF08311 Mad3_BUB1_I: Mad3/BUB 49.9 60 0.0013 20.0 8.3 42 62-103 81-123 (126)
382 PF07079 DUF1347: Protein of u 49.9 1.2E+02 0.0027 23.6 9.9 88 60-150 437-530 (549)
383 TIGR01529 argR_whole arginine 49.2 63 0.0014 20.6 4.7 29 52-80 8-36 (146)
384 PRK02287 hypothetical protein; 48.8 76 0.0017 20.9 6.4 54 17-70 111-166 (171)
385 PRK13342 recombination factor 48.8 1.2E+02 0.0025 23.0 11.9 62 49-110 232-301 (413)
386 smart00028 TPR Tetratricopepti 47.9 21 0.00046 14.2 3.3 24 48-71 5-28 (34)
387 COG2405 Predicted nucleic acid 47.6 68 0.0015 20.5 4.5 39 85-123 115-153 (157)
388 KOG2223 Uncharacterized conser 47.4 37 0.00081 26.0 3.9 43 99-141 459-501 (586)
389 PHA03100 ankyrin repeat protei 47.4 80 0.0017 24.1 5.9 132 3-140 53-199 (480)
390 KOG1166 Mitotic checkpoint ser 47.1 1.9E+02 0.0041 25.0 8.4 74 55-128 89-163 (974)
391 cd08790 DED_DEDD Death Effecto 47.0 38 0.00083 19.9 3.1 56 56-113 36-91 (97)
392 PF01475 FUR: Ferric uptake re 46.6 49 0.0011 19.9 3.9 45 49-93 12-56 (120)
393 PRK13713 conjugal transfer pro 46.4 68 0.0015 19.6 7.4 62 60-126 6-69 (118)
394 PF10963 DUF2765: Protein of u 46.2 30 0.00065 19.8 2.6 59 8-71 11-70 (83)
395 PF11817 Foie-gras_1: Foie gra 45.8 1E+02 0.0022 21.5 7.0 54 84-137 183-241 (247)
396 PF13646 HEAT_2: HEAT repeats; 45.8 52 0.0011 18.1 5.3 49 42-94 12-60 (88)
397 KOG4567 GTPase-activating prot 45.7 91 0.002 22.9 5.4 57 99-156 263-319 (370)
398 PF00531 Death: Death domain; 45.6 52 0.0011 18.0 4.1 41 61-103 41-81 (83)
399 KOG1130 Predicted G-alpha GTPa 45.2 26 0.00057 26.8 2.8 50 54-103 27-79 (639)
400 COG2812 DnaX DNA polymerase II 45.1 1.5E+02 0.0034 23.4 7.8 64 53-118 207-284 (515)
401 KOG1585 Protein required for f 45.0 1.1E+02 0.0024 21.8 9.8 14 22-35 40-53 (308)
402 cd00280 TRFH Telomeric Repeat 44.5 97 0.0021 20.9 6.6 67 60-129 85-158 (200)
403 cd00280 TRFH Telomeric Repeat 44.4 97 0.0021 20.9 6.6 60 95-154 85-152 (200)
404 PF14840 DNA_pol3_delt_C: Proc 43.7 31 0.00066 21.3 2.6 24 57-80 10-33 (125)
405 COG0735 Fur Fe2+/Zn2+ uptake r 43.1 86 0.0019 19.9 4.7 25 50-74 26-50 (145)
406 smart00164 TBC Domain in Tre-2 42.8 89 0.0019 20.5 5.0 78 59-140 108-193 (199)
407 KOG2214 Predicted esterase of 42.7 1.7E+02 0.0037 23.2 6.7 27 136-162 307-333 (543)
408 PF11817 Foie-gras_1: Foie gra 42.6 67 0.0015 22.3 4.5 61 45-105 179-244 (247)
409 smart00777 Mad3_BUB1_I Mad3/BU 42.2 84 0.0018 19.5 4.4 43 96-138 80-123 (125)
410 PF07163 Pex26: Pex26 protein; 42.0 1.3E+02 0.0029 21.8 8.3 83 20-102 90-181 (309)
411 PRK11906 transcriptional regul 41.8 1.7E+02 0.0036 22.8 7.7 109 26-139 317-432 (458)
412 KOG1147 Glutamyl-tRNA syntheta 41.6 46 0.00099 26.4 3.7 70 65-142 254-331 (712)
413 KOG0400 40S ribosomal protein 41.6 36 0.00078 21.2 2.6 64 59-124 29-96 (151)
414 PRK07452 DNA polymerase III su 41.3 1.4E+02 0.0029 21.7 7.0 31 46-78 203-233 (326)
415 COG5210 GTPase-activating prot 41.0 1.6E+02 0.0036 23.0 6.7 45 66-110 364-408 (496)
416 KOG2908 26S proteasome regulat 40.9 1.5E+02 0.0033 22.1 8.7 86 47-132 78-175 (380)
417 KOG2063 Vacuolar assembly/sort 40.7 2.3E+02 0.005 24.2 10.0 114 14-127 505-639 (877)
418 cd01671 CARD Caspase activatio 40.4 53 0.0011 18.0 3.1 28 130-157 43-70 (80)
419 PF09670 Cas_Cas02710: CRISPR- 40.3 1.4E+02 0.003 22.5 6.0 18 56-73 143-160 (379)
420 PF03745 DUF309: Domain of unk 40.2 60 0.0013 17.2 4.1 15 56-70 11-25 (62)
421 PF10475 DUF2450: Protein of u 40.1 1.4E+02 0.003 21.4 6.0 20 112-131 195-214 (291)
422 PF11838 ERAP1_C: ERAP1-like C 39.9 1.4E+02 0.003 21.4 9.3 130 10-141 166-306 (324)
423 PF07443 HARP: HepA-related pr 39.6 16 0.00035 19.0 0.8 33 59-91 7-39 (55)
424 KOG1586 Protein required for f 39.5 1.4E+02 0.003 21.2 5.3 106 22-128 23-141 (288)
425 PHA02875 ankyrin repeat protei 39.4 1.6E+02 0.0035 22.0 8.2 127 3-139 53-190 (413)
426 KOG0686 COP9 signalosome, subu 39.2 1.8E+02 0.0039 22.4 7.3 91 45-137 151-252 (466)
427 PRK11639 zinc uptake transcrip 38.8 1.1E+02 0.0024 19.9 6.6 46 50-95 31-76 (169)
428 KOG2223 Uncharacterized conser 38.6 55 0.0012 25.2 3.6 46 64-109 459-504 (586)
429 COG0457 NrfG FOG: TPR repeat [ 38.1 1E+02 0.0023 19.5 12.8 89 16-105 62-156 (291)
430 PF10366 Vps39_1: Vacuolar sor 37.6 92 0.002 18.6 7.5 27 81-107 41-67 (108)
431 PF12862 Apc5: Anaphase-promot 37.4 82 0.0018 18.0 5.9 53 55-107 9-69 (94)
432 PF10255 Paf67: RNA polymerase 37.4 1.2E+02 0.0026 23.2 5.2 57 15-71 124-191 (404)
433 KOG2297 Predicted translation 37.2 1.7E+02 0.0037 21.7 7.3 66 59-133 270-340 (412)
434 COG2405 Predicted nucleic acid 36.6 79 0.0017 20.2 3.6 37 53-89 118-154 (157)
435 PF05664 DUF810: Protein of un 36.2 1.5E+02 0.0033 24.3 6.0 62 73-134 211-283 (677)
436 COG1466 HolA DNA polymerase II 36.1 1.4E+02 0.003 21.9 5.5 75 3-79 152-243 (334)
437 PRK09857 putative transposase; 36.0 1.7E+02 0.0036 21.2 7.9 58 55-113 217-274 (292)
438 KOG1586 Protein required for f 35.5 1.6E+02 0.0035 20.9 7.9 28 90-117 165-192 (288)
439 PF07575 Nucleopor_Nup85: Nup8 35.1 2.3E+02 0.0051 22.6 7.5 76 64-141 390-465 (566)
440 cd08330 CARD_ASC_NALP1 Caspase 35.1 87 0.0019 17.7 4.9 27 129-155 44-70 (82)
441 cd00045 DED The Death Effector 34.8 85 0.0018 17.4 4.1 15 60-74 36-50 (77)
442 PF14744 WASH-7_mid: WASH comp 34.8 1.7E+02 0.0037 21.8 5.5 47 60-108 282-328 (350)
443 PHA03100 ankyrin repeat protei 34.4 2.1E+02 0.0046 21.9 6.7 130 3-139 91-239 (480)
444 PF04090 RNA_pol_I_TF: RNA pol 34.0 1.5E+02 0.0033 20.1 5.4 30 44-73 41-70 (199)
445 PRK09687 putative lyase; Provi 33.8 1.8E+02 0.0039 20.8 13.9 81 10-92 34-118 (280)
446 TIGR02328 conserved hypothetic 33.8 43 0.00093 20.4 2.0 16 99-114 55-70 (120)
447 KOG2066 Vacuolar assembly/sort 33.7 2.9E+02 0.0063 23.3 8.6 127 14-144 393-535 (846)
448 KOG1130 Predicted G-alpha GTPa 33.4 37 0.00081 26.0 2.1 45 22-66 26-77 (639)
449 cd08810 CARD_BCL10 Caspase act 33.3 98 0.0021 17.7 4.6 31 126-157 42-72 (84)
450 cd08315 Death_TRAILR_DR4_DR5 D 33.3 1E+02 0.0023 18.0 5.6 48 60-109 47-94 (96)
451 smart00804 TAP_C C-terminal do 33.2 69 0.0015 17.1 2.6 24 56-79 37-61 (63)
452 PF12816 Vps8: Golgi CORVET co 33.1 36 0.00077 22.9 1.9 66 11-77 20-85 (196)
453 PF11838 ERAP1_C: ERAP1-like C 32.7 1.9E+02 0.004 20.7 8.4 106 29-138 146-261 (324)
454 PF10475 DUF2450: Protein of u 32.3 1.9E+02 0.0042 20.7 8.1 24 76-99 194-217 (291)
455 KOG2041 WD40 repeat protein [G 32.2 3.1E+02 0.0067 23.1 8.6 61 11-73 690-763 (1189)
456 PF08631 SPO22: Meiosis protei 32.2 1.9E+02 0.004 20.6 11.3 101 14-115 85-193 (278)
457 KOG3636 Uncharacterized conser 31.9 2.5E+02 0.0054 22.0 7.6 83 73-156 177-271 (669)
458 KOG2297 Predicted translation 31.6 2.2E+02 0.0047 21.2 5.6 19 144-162 320-338 (412)
459 PF06552 TOM20_plant: Plant sp 31.4 1.6E+02 0.0036 19.7 7.5 78 46-125 30-124 (186)
460 PRK15180 Vi polysaccharide bio 31.2 2.7E+02 0.0059 22.2 6.8 85 54-140 333-417 (831)
461 PF11491 DUF3213: Protein of u 31.2 16 0.00035 20.7 0.0 24 5-28 16-39 (88)
462 smart00386 HAT HAT (Half-A-TPR 31.1 51 0.0011 13.7 3.9 15 94-108 2-16 (33)
463 TIGR02710 CRISPR-associated pr 30.7 2.4E+02 0.0052 21.4 6.2 53 51-103 137-195 (380)
464 smart00031 DED Death effector 30.7 1E+02 0.0022 17.1 4.3 37 61-98 38-74 (79)
465 PRK06645 DNA polymerase III su 30.5 2.8E+02 0.006 22.0 7.4 23 57-79 270-292 (507)
466 smart00165 UBA Ubiquitin assoc 30.3 64 0.0014 14.6 3.7 13 101-113 4-16 (37)
467 PF00244 14-3-3: 14-3-3 protei 30.2 1.9E+02 0.0041 20.1 6.8 55 51-105 8-63 (236)
468 cd08789 CARD_IPS-1_RIG-I Caspa 30.0 1.1E+02 0.0024 17.4 7.0 49 46-99 34-82 (84)
469 PF08542 Rep_fac_C: Replicatio 29.8 1.1E+02 0.0024 17.1 6.1 17 94-110 19-35 (89)
470 cd08311 Death_p75NR Death doma 29.5 73 0.0016 17.8 2.4 35 61-99 40-74 (77)
471 smart00164 TBC Domain in Tre-2 29.5 1.2E+02 0.0026 19.9 4.0 63 94-156 108-178 (199)
472 PRK15180 Vi polysaccharide bio 29.5 1.8E+02 0.004 23.0 5.1 101 5-108 317-420 (831)
473 PF07827 KNTase_C: KNTase C-te 29.0 83 0.0018 20.0 2.8 101 2-105 7-117 (143)
474 PF14162 YozD: YozD-like prote 28.7 92 0.002 15.9 3.6 19 97-115 13-31 (57)
475 PRK07764 DNA polymerase III su 28.5 3.7E+02 0.0081 22.9 7.3 69 7-78 195-281 (824)
476 smart00540 LEM in nuclear memb 28.1 77 0.0017 15.6 2.1 17 65-81 10-26 (44)
477 COG3294 HD supefamily hydrolas 27.6 61 0.0013 22.6 2.2 21 61-81 67-87 (269)
478 COG4649 Uncharacterized protei 27.6 2E+02 0.0043 19.4 7.5 94 20-113 101-201 (221)
479 PRK01381 Trp operon repressor; 27.4 86 0.0019 18.6 2.6 35 10-44 3-37 (99)
480 PRK14971 DNA polymerase III su 27.4 3.4E+02 0.0074 22.1 7.5 71 6-79 195-282 (614)
481 TIGR03184 DNA_S_dndE DNA sulfu 26.9 1.1E+02 0.0025 18.3 3.1 17 74-90 79-95 (105)
482 COG1747 Uncharacterized N-term 26.9 3.4E+02 0.0073 21.9 12.0 33 109-141 200-232 (711)
483 PF02259 FAT: FAT domain; Int 26.6 2.5E+02 0.0054 20.2 7.9 65 43-107 145-212 (352)
484 PF01335 DED: Death effector d 26.5 1.3E+02 0.0028 16.8 5.0 41 62-103 38-78 (84)
485 PF07304 SRA1: Steroid recepto 26.4 1.2E+02 0.0026 19.6 3.4 49 60-108 70-119 (157)
486 PF08986 DUF1889: Domain of un 26.3 1.5E+02 0.0032 17.5 3.8 53 60-112 25-80 (119)
487 smart00638 LPD_N Lipoprotein N 26.2 3.4E+02 0.0073 21.6 12.2 67 41-112 307-373 (574)
488 COG2178 Predicted RNA-binding 26.2 2.2E+02 0.0047 19.4 7.1 56 16-71 32-96 (204)
489 KOG3807 Predicted membrane pro 26.1 2.7E+02 0.0058 21.0 5.3 58 50-107 281-339 (556)
490 KOG0414 Chromosome condensatio 26.1 4.8E+02 0.01 23.3 8.3 115 48-163 527-655 (1251)
491 COG5210 GTPase-activating prot 26.1 3.2E+02 0.007 21.4 7.0 34 41-74 374-407 (496)
492 PF12554 MOZART1: Mitotic-spin 26.0 1E+02 0.0022 15.6 3.1 23 56-78 16-38 (48)
493 PF09119 SicP-binding: SicP bi 25.9 1.4E+02 0.003 17.0 5.7 50 28-77 21-70 (81)
494 COG2987 HutU Urocanate hydrata 25.5 1.2E+02 0.0026 23.6 3.6 34 60-93 241-278 (561)
495 PF12793 SgrR_N: Sugar transpo 25.3 1.7E+02 0.0036 17.8 7.5 62 75-138 15-94 (115)
496 PHA02940 hypothetical protein; 25.3 2.6E+02 0.0055 19.9 9.2 70 47-124 145-214 (315)
497 PRK09111 DNA polymerase III su 25.2 3.8E+02 0.0081 21.8 7.8 70 7-79 207-293 (598)
498 PF08311 Mad3_BUB1_I: Mad3/BUB 24.9 1.8E+02 0.0038 17.9 7.7 86 51-139 33-124 (126)
499 COG2042 Uncharacterized conser 24.9 2.1E+02 0.0046 18.9 6.2 24 47-70 118-141 (179)
500 PF01371 Trp_repressor: Trp re 24.8 38 0.00082 19.5 0.8 29 16-44 3-31 (87)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=236.02 Aligned_cols=162 Identities=29% Similarity=0.536 Sum_probs=157.1
Q ss_pred hHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH
Q 031208 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82 (164)
Q Consensus 3 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 82 (164)
.+.+.|+.||..++++||++|++.|++++|.++|+.|.++|.++||.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCCC
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 162 (164)
++++.+|++.|++++|.+++++|.+.|+.||..+|+.|+++|+++|++++|.++|++|.+||+.+||+||.+|++.|+.+
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 031208 163 AA 164 (164)
Q Consensus 163 ~A 164 (164)
+|
T Consensus 409 ~A 410 (697)
T PLN03081 409 KA 410 (697)
T ss_pred HH
Confidence 75
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-35 Score=231.92 Aligned_cols=163 Identities=33% Similarity=0.531 Sum_probs=157.3
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
.+|.+.|+.||..+++++|.+|++.|+++.|.++|+.|+.||.++||++|.+|++.|++++|+++|.+|...|+.||..|
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 35667788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCC
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 161 (164)
|+++|.+|++.|+.+.|.+++.+|.+.|+.||..+|+.||++|++.|++++|.++|++|..||.++||+||.+|++.|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 031208 162 DAA 164 (164)
Q Consensus 162 ~~A 164 (164)
++|
T Consensus 371 ~~A 373 (857)
T PLN03077 371 DKA 373 (857)
T ss_pred HHH
Confidence 865
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-35 Score=229.79 Aligned_cols=163 Identities=26% Similarity=0.470 Sum_probs=158.4
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
..|.+.|+.||..+|+++|.+|++.|++++|.++|+.|..||.++||.+|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCC
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 161 (164)
|++++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||++|+++|++++|.++|++|.++|.++||++|.+|++.|+.
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 031208 162 DAA 164 (164)
Q Consensus 162 ~~A 164 (164)
++|
T Consensus 472 ~eA 474 (857)
T PLN03077 472 FEA 474 (857)
T ss_pred HHH
Confidence 764
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=224.30 Aligned_cols=163 Identities=26% Similarity=0.474 Sum_probs=159.5
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
..|.+.|+.||..+|+.++++|++.|+++.|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|+.|+..|
T Consensus 147 ~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred HHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCC
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 161 (164)
|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.||++|+++|++++|.++|++|.++|+++||+||.+|++.|++
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 031208 162 DAA 164 (164)
Q Consensus 162 ~~A 164 (164)
++|
T Consensus 307 ~eA 309 (697)
T PLN03081 307 EEA 309 (697)
T ss_pred HHH
Confidence 875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-34 Score=228.18 Aligned_cols=164 Identities=23% Similarity=0.369 Sum_probs=135.2
Q ss_pred ChhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 031208 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76 (164)
Q Consensus 1 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 76 (164)
|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 3567788888888888888888888888888888888887 478888888888888888888888888888888888
Q ss_pred CCcccHHHHHHHHHhccchhhHHHHHHHHHH--hCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC----CCCcchHHH
Q 031208 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVK--AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR----VRSVVSWTT 150 (164)
Q Consensus 77 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~ 150 (164)
||..||+.+|.+|++.|++++|.+++++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|. .|+..+|++
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 8888888888888888888888888888875 5678888888888888888888888888888886 345678888
Q ss_pred HHHHHHhcCCCCCC
Q 031208 151 MISGLAASGDLDAA 164 (164)
Q Consensus 151 li~~~~~~g~~~~A 164 (164)
+|.+|++.|++++|
T Consensus 620 LI~ay~k~G~~deA 633 (1060)
T PLN03218 620 AVNSCSQKGDWDFA 633 (1060)
T ss_pred HHHHHHhcCCHHHH
Confidence 88888888877654
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-34 Score=226.57 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=104.0
Q ss_pred hcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH
Q 031208 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 82 (164)
.|+.||..+|+++|.+|++.|++++|.++|+.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3455666666666666666666666666666554 245566666666666666666666666666666666666666
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC----CCCcchHHHHHHHHHhc
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR----VRSVVSWTTMISGLAAS 158 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~ 158 (164)
+++|++|++.|++++|.+++++|.+.|+.|+..+|+.||++|++.|++++|.++|++|. .||..+||+||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 66666666666666666666666666666777777777777777777777777777664 56777777777777777
Q ss_pred CCCCCC
Q 031208 159 GDLDAA 164 (164)
Q Consensus 159 g~~~~A 164 (164)
|++++|
T Consensus 733 G~~eeA 738 (1060)
T PLN03218 733 NQLPKA 738 (1060)
T ss_pred CCHHHH
Confidence 766654
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.73 E-value=1.2e-17 Score=86.77 Aligned_cols=50 Identities=30% Similarity=0.523 Sum_probs=37.4
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=8.7e-17 Score=83.52 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred CCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 031208 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 77 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
||..+||++|++|++.|++++|.++|++|++.|+.||..||+.+|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=8.8e-13 Score=94.31 Aligned_cols=130 Identities=14% Similarity=0.153 Sum_probs=110.3
Q ss_pred cCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 8 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
-.+-+..++.+||.+.||....+.|.+++++-. +-+..+||.+|.+-+-... .++..+|.+..++||..|||
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 345578899999999999999999999999876 4677889988877654433 78999999999999999999
Q ss_pred HHHHHHHhccchhh----HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchh-HHHHhcccC
Q 031208 84 FVIKACIASLAIEK----GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG-GRKMFDKMR 141 (164)
Q Consensus 84 ~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~ 141 (164)
+++++..+.|+++. |.+++.+|++-|++|...+|..+|..+.+.++..+ +..+..++.
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 99999999998876 56788999999999999999999999999887643 555555543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.40 E-value=8.6e-12 Score=91.04 Aligned_cols=147 Identities=14% Similarity=0.053 Sum_probs=68.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----ccHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK----FTFPFVIK 87 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~ 87 (164)
.+..+...+.+.|+++.|..+|+.+.+ ++..+++.+...+.+.|++++|.+.++++.+.+-.+.. ..+..+..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344555555555555555555555542 33445555555555555555555555555443211111 12233444
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCC--cchHHHHHHHHHhcCCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS--VVSWTTMISGLAASGDLD 162 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~--~~~~~~li~~~~~~g~~~ 162 (164)
.+.+.|+.++|...++++.+.. +.+...+..+...|.+.|++++|.++|+++. .|+ ..+++.+..+|.+.|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 4445555555555555554432 1223344444445555555555555555444 121 123444445555554444
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.35 E-value=5.4e-11 Score=86.87 Aligned_cols=135 Identities=12% Similarity=0.011 Sum_probs=61.7
Q ss_pred HHHHhccCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchh
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 96 (164)
...+.+.|++++|..+|+++.+ | +...+..+...+.+.|++++|.+.|+++...+......+++.+..+|...|+.+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 3334444444444444444331 2 223344444445555555555555555543321111233444455555555555
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHH
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLA 156 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~ 156 (164)
+|.+.++.+.+. .|+...+..+...+.+.|++++|.++|+++. .|+..+++.++..+.
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 555555554443 2333344445555555555555555555443 344445554444443
No 12
>PF12854 PPR_1: PPR repeat
Probab=99.29 E-value=3.6e-12 Score=60.25 Aligned_cols=33 Identities=39% Similarity=0.655 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 109 GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 109 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666663
No 13
>PF12854 PPR_1: PPR repeat
Probab=99.29 E-value=4.5e-12 Score=59.91 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.0
Q ss_pred hcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC
Q 031208 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR 40 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 40 (164)
+|++||..+|++||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888774
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=5.4e-10 Score=80.37 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=120.5
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHh--ccCCcHH-------------------------HHHHHhccCCCcHhHHHHHHHHH
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCS--FYGKTDH-------------------------ALLVFSQIRCPHVFTWNLMIRAL 54 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~--~~~~~~~-------------------------a~~~~~~~~~~~~~~~~~li~~~ 54 (164)
+.|+..|.+.+..+--.|+..-+ ....+-. |.-+|+..+ ....+|.++|.+.
T Consensus 139 ~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-KT~et~s~mI~Gl 217 (625)
T KOG4422|consen 139 ERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-KTDETVSIMIAGL 217 (625)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-CCchhHHHHHHHH
Confidence 45777788888777777766433 2222221 222222222 2346899999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHH
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 134 (164)
|+-...+.|.+++++-.....+.+..+||.+|.+..-..+ .+++.+|....+.||..|+|+++.+.++.|+++.|.
T Consensus 218 ~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar 293 (625)
T KOG4422|consen 218 CKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR 293 (625)
T ss_pred HHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH
Confidence 9999999999999999888889999999999987655433 789999999999999999999999999999998765
Q ss_pred ----HHhcccC----CCCcchHHHHHHHHHhcCCCC
Q 031208 135 ----KMFDKMR----VRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 135 ----~~~~~m~----~~~~~~~~~li~~~~~~g~~~ 162 (164)
+++.+|+ +|...+|..+|..+.+.++..
T Consensus 294 ~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 294 KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 4555665 789999999999999887653
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.20 E-value=8.8e-10 Score=87.47 Aligned_cols=149 Identities=15% Similarity=0.057 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...|..+...+.+.|++++|...|+.+.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 444555555555555555555555554431 233344445555555555555555555554321 1223344444444
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHHhcCCCC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~ 162 (164)
+...|++++|.++++.+...+ +++...+..+...+.+.|++++|.+.|+.+. .|+..++..+...+.+.|+++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHH
Confidence 555555555555555444433 2333444444445555555555555555443 223334444444444444443
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.16 E-value=1.5e-09 Score=86.18 Aligned_cols=146 Identities=13% Similarity=0.114 Sum_probs=64.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
+..+...+.+.|+++.|..+++.+. ..+...|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3333444444444444444444432 1233444444444444444444444444443321 12233344444444444
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHHHHHHHHHhcCCCCC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 163 (164)
|++++|..+++.+.+.. +.+...+..+...+...|++++|.++++.+.+ ++...+..+...|.+.|++++
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 55555555444444332 22344444445555555555555555554431 133344445555555555443
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.05 E-value=3.1e-09 Score=82.17 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=52.6
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC----------------------------CCcHhHHHHHHHH
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR----------------------------CPHVFTWNLMIRA 53 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----------------------------~~~~~~~~~li~~ 53 (164)
..+...|+.|+.++|.++|.-||..|+++.|- +|..|. .|...+|+.|+.+
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKA 92 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHH
Confidence 35678899999999999999999999999998 888775 1567899999999
Q ss_pred HHhcCChhH
Q 031208 54 LTIDGSSLQ 62 (164)
Q Consensus 54 ~~~~~~~~~ 62 (164)
|...|+...
T Consensus 93 yr~hGDli~ 101 (1088)
T KOG4318|consen 93 YRIHGDLIL 101 (1088)
T ss_pred HHhccchHH
Confidence 999998755
No 18
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.03 E-value=1.5e-09 Score=76.06 Aligned_cols=151 Identities=18% Similarity=0.137 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC-----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR-----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPF 84 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ 84 (164)
+++..+...+..+.+.++.+.+.++++... .++...|..+-..+.+.|++++|.+.+++..+. .| |......
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 566778888889999999999999988854 356677888888899999999999999999775 46 4667888
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDL 161 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~ 161 (164)
++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|..+|++.. .| |......+..++...|+.
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999888765 5667788899999999999999999999876 34 778888899999999999
Q ss_pred CCC
Q 031208 162 DAA 164 (164)
Q Consensus 162 ~~A 164 (164)
++|
T Consensus 265 ~~A 267 (280)
T PF13429_consen 265 DEA 267 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 886
No 19
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.97 E-value=1.5e-09 Score=51.53 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 79 (164)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6777888888888888888888888777777763
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=8.4e-08 Score=64.55 Aligned_cols=149 Identities=16% Similarity=0.074 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKA 88 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~ 88 (164)
...+..+...+...|+++.|.+.++... ..+...+..+...+...|++++|...+.+.......| ....+..+...
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 3444444555555555555555555443 1233344444555555555666655555554432111 22234444455
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 162 (164)
+...|++++|...+.+..+.. +.+...+..+...+.+.|++++|.+.+++.. ..+...+..+...+...|+.+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 555566666666665555432 1233445555555566666666666555443 123334444445554544443
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.92 E-value=9.1e-08 Score=64.39 Aligned_cols=152 Identities=11% Similarity=-0.052 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
....+..+...+...|++++|...+++.. .| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35667778889999999999999999865 23 46678888889999999999999999987753 3344567778889
Q ss_pred HHhccchhhHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
+...|++++|.+.+++....... .....+..+...+.+.|++++|...|++.. .| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998865322 234567777888999999999999998775 23 456788888889888887754
No 22
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.90 E-value=3e-09 Score=50.18 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 77 (164)
.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777666665
No 23
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.88 E-value=3.5e-08 Score=72.23 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=106.5
Q ss_pred hcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC-CcH-----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc
Q 031208 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PHV-----FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 80 (164)
++.+.+.....++++.+....+++.+.+++-+++. |+. .|.+++|..|.+.|..+.++++++.=.+.|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 45677888899999999999999999998888763 322 356799999999999999999999999999999999
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 127 (164)
|||.||+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999888777788888777777766
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.83 E-value=1.8e-07 Score=72.50 Aligned_cols=150 Identities=11% Similarity=0.006 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
...+..+-..+...|++++|...|++.. .|+ ...|..+-..+...|++++|...|++..+.. +-+...|..+...+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4456666667778999999999998875 344 4577777788888999999999999886642 33456788888888
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|++.. .| +...|+.+-..+...|++++|
T Consensus 410 ~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 99999999999999887654 3346667777888888999999999998765 33 566888888888888887754
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.80 E-value=2.9e-07 Score=71.85 Aligned_cols=116 Identities=9% Similarity=-0.046 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC--CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR--CPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
..+..+...+...|++++|...+..+. .|+ ...+..+ ..+...|++++|...++.+....-.++...+..+...+.
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 334444444455555555554444332 111 1111111 223444444555444444433221122222222334444
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
..|+.++|...++...... +.+...+..+-..|.+.|+++
T Consensus 224 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 224 AVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 4445555544444444332 122333344444444444444
No 26
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.80 E-value=1.1e-08 Score=48.41 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCch
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM 114 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 114 (164)
.+|+++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999973
No 27
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.77 E-value=1.7e-08 Score=47.50 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCC
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 112 (164)
.||+++|++|++.|+++.|.+++++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 28
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.76 E-value=2.7e-07 Score=54.89 Aligned_cols=82 Identities=15% Similarity=0.000 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcc--------chhhHHHHHHHHHHhCCCCchHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGF-RPDKFTFPFVIKACIASL--------AIEKGKEVHGLAVKAGFSRDMFV 116 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~ 116 (164)
+-...|..+...+++.....+|+.++++|+ .|+..+|+.++++.++.. +.-....+++.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 999999999999998774 34457789999999999999999
Q ss_pred HHHHHHHHHhc
Q 031208 117 QSTLMDLYLKC 127 (164)
Q Consensus 117 ~~~ll~~~~~~ 127 (164)
|+.++....+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.74 E-value=1.1e-06 Score=68.69 Aligned_cols=149 Identities=9% Similarity=-0.049 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
...+..+-..+.+.|+++.|...+++... | +...+..+...+...|++++|...++.+.... |+.......+..+
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l 187 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSF 187 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 44555566677777777777777777652 3 45567777777777888888888777775543 2222222222346
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 163 (164)
...|++++|...++.+.+..-.++...+..+...+.+.|++++|...|++.. .| +...+..+-..|...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh
Confidence 6778888888877777655322334444555667778888888888887765 22 45567777777788887764
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.71 E-value=1.7e-07 Score=65.73 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
.+++...|..+-..+.+.|+.++|.+.+++.. .| |....+.++..+...|+.+++.+++....... +.|...+..+
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l 220 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDAL 220 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 45678889999999999999999999999876 46 46788899999999999999999999987664 5666778899
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..++...|+.++|..++++..+.. +.|......+.+++.+.|+.++|.++.++..
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 999999999999999999988765 4578888899999999999999999887653
No 31
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.68 E-value=3.1e-08 Score=45.58 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=98.65 E-value=2.9e-06 Score=65.16 Aligned_cols=147 Identities=11% Similarity=0.015 Sum_probs=108.0
Q ss_pred CC-CHHHHHHHHHHHhccCCcHHHHHHHhccC--CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHH
Q 031208 10 SN-DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPF 84 (164)
Q Consensus 10 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ 84 (164)
.| +...+..+-..+...|++++|...|++.. .|+ ...+..+-..+...|++++|...+++..+.. |+. ..+..
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~ 411 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGIT 411 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHH
Confidence 44 45666666677888999999999999876 354 5567778888999999999999999997753 543 23334
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCchhHHHHhcccCC--C-CcchHHHHHHHHHhcC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-SVVSWTTMISGLAASG 159 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g 159 (164)
+...+...|++++|...+++..+.. .| +...+..+-..|...|+.++|...+.++.. | +...++.+...|.+.|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 4556777899999999999887654 34 344566777888899999999999988763 2 3334555555666555
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.65 E-value=7.4e-07 Score=72.07 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=52.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHh
Q 031208 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 58 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
|++++|...+++..+. .|+...+..+-..+.+.|+.++|...+++..... +.+...++.+-..+...|+.++|...|
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555555432 2344445555555555555555555555554442 223334444444555555555555555
Q ss_pred cccC--CC-CcchHHHHHHHHHhcCCCCC
Q 031208 138 DKMR--VR-SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 138 ~~m~--~~-~~~~~~~li~~~~~~g~~~~ 163 (164)
++.. .| +...+..+-.++...|++++
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 5443 22 34455555555555555544
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.59 E-value=2.5e-06 Score=66.32 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
..+|..+-..+...|++++|...|++.. .| +...+..+-..+.+.|++++|...|++..+.. +-+...++.+-..+
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3444444445555555555555555443 12 23344444455555555555555555554421 22334555555555
Q ss_pred HhccchhhHHHHHHHHHHhCCCCch------HHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDM------FVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGD 160 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~ 160 (164)
...|++++|...+++.....-..+. ..++.....|...|++++|.+++++.. .| +...+..+...+.+.|+
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 6666666666666555443211000 011112222333466666666665532 22 33456666667777766
Q ss_pred CCCC
Q 031208 161 LDAA 164 (164)
Q Consensus 161 ~~~A 164 (164)
+++|
T Consensus 558 ~~eA 561 (615)
T TIGR00990 558 VDEA 561 (615)
T ss_pred HHHH
Confidence 6554
No 35
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=3.8e-06 Score=61.41 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
......++..+...++++.|.++|+++.+.+......+...+...++-.+|.+++++..+.. +-+......-.+.+.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 44555667777778999999999999986555566668888888888899999999987542 22444444455678888
Q ss_pred cchhhHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDM-FVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
++.+.|..+.++.... .|+. .+|..|..+|.+.|+++.|+-.++.++
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999998876 4654 599999999999999999999999887
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.55 E-value=5.4e-06 Score=66.01 Aligned_cols=162 Identities=8% Similarity=-0.003 Sum_probs=123.2
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCC---------cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP---------HVFTWNLMIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
+.|...|.+....+-..+-++|...+++++|..++.....+ +......|..++...+++++|..+++++..
T Consensus 316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34556676656668888999999999999999999987421 233357789999999999999999999987
Q ss_pred cCC-----------CCCc---ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhc
Q 031208 73 NGF-----------RPDK---FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 73 ~~~-----------~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
..- .||. .-+..+...+.-.|+..+|++.++++.... +-|..+...+-+.+...|+..+|.+.++
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 311 1222 123345677888999999999999997665 5678899999999999999999999997
Q ss_pred ccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 139 KMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 139 ~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
... .| +..+......++...|++++|
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 654 44 555666677777777776543
No 37
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.54 E-value=1.3e-07 Score=43.35 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCC
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 110 (164)
+||+++|++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4778888888888888888888888877664
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.53 E-value=5.5e-06 Score=65.95 Aligned_cols=144 Identities=7% Similarity=-0.064 Sum_probs=91.8
Q ss_pred HHHHHhccCCcHHHHHHHhccCC--Cc-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCCCc-
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRC--PH-----VFTWNLMIRALTIDGSSLQALLLYNLMICNG-----------FRPDK- 79 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------~~p~~- 79 (164)
+-..+...|++++|...|+.... |. ......+..++...|++++|...++++.... -.|+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 35567777788888777776542 21 2345555666777788888888877776542 01221
Q ss_pred --ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHH
Q 031208 80 --FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISG 154 (164)
Q Consensus 80 --~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~ 154 (164)
..+..+...+...|+.++|.+.++++.... +.+...+..+...+...|+.++|.+.+++.. .| +...+-.....
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 123445566777778888888877776553 4456677777777777888888888877665 34 34455555556
Q ss_pred HHhcCCCCC
Q 031208 155 LAASGDLDA 163 (164)
Q Consensus 155 ~~~~g~~~~ 163 (164)
+.+.|++++
T Consensus 437 al~~~~~~~ 445 (765)
T PRK10049 437 ALDLQEWRQ 445 (765)
T ss_pred HHHhCCHHH
Confidence 666666654
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.53 E-value=4.8e-06 Score=67.52 Aligned_cols=151 Identities=9% Similarity=-0.056 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFVI 86 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll 86 (164)
.|+......+...+...|++++|...|+++.. |+...+..+...+.+.|++++|...+++..+.. |+. ..+..+.
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La 583 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLH 583 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHH
Confidence 35543322233344578888888888886552 444445556667788888888888888887654 433 2222233
Q ss_pred HHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCC
Q 031208 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 163 (164)
....+.|++++|...+++..+. .|+...+..+-..+.+.|+.++|...|++.. .| +...++.+-..+...|++++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3344558999999998888765 4677788888888999999999999998776 34 55677777778888888765
Q ss_pred C
Q 031208 164 A 164 (164)
Q Consensus 164 A 164 (164)
|
T Consensus 662 A 662 (987)
T PRK09782 662 S 662 (987)
T ss_pred H
Confidence 4
No 40
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.52 E-value=1.3e-06 Score=58.09 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=82.9
Q ss_pred HHHHHhcc--CCCcHhHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc------------
Q 031208 32 ALLVFSQI--RCPHVFTWNLMIRALTID-----GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS------------ 92 (164)
Q Consensus 32 a~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------ 92 (164)
-.+.|+.. ...|..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.||+.+-+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 44566665 468889999999998764 77888999999999999999999999999998653
Q ss_pred ----cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 93 ----LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 93 ----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
..-+-|.+++++|..+|+.||..++..|++.+.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345688999999999999999999999999987765
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=98.49 E-value=8.1e-06 Score=62.71 Aligned_cols=135 Identities=12% Similarity=-0.011 Sum_probs=103.6
Q ss_pred cCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhccchhhHHHH
Q 031208 26 YGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKACIASLAIEKGKEV 101 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~ 101 (164)
.+++++|...+++..+ | +...+..+-..+...|++++|...|++..+.+ |+ ...+..+-..+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3457889999988763 4 56677777778889999999999999998754 54 55677888899999999999999
Q ss_pred HHHHHHhCCCCch-HHHHHHHHHHHhcCCchhHHHHhcccC---CCC-cchHHHHHHHHHhcCCCCCC
Q 031208 102 HGLAVKAGFSRDM-FVQSTLMDLYLKCGDVDGGRKMFDKMR---VRS-VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 102 ~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~-~~~~~~li~~~~~~g~~~~A 164 (164)
+++..+.. |+. ..+..+...+...|++++|...+++.. .|+ ...+..+-..|...|+.++|
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 99988764 442 233344555677899999999998874 243 34567777888899998765
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.47 E-value=2.3e-07 Score=72.23 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCc
Q 031208 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSV 145 (164)
Q Consensus 66 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 145 (164)
++..++..|+.||.+||.++|.-||..|+++.|- +|.-|+......+...++.++.+-.+.++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4555666666666666666666666666666666 6666666665566666666666666666655443 5555
Q ss_pred chHHHHHHHHHhcCCC
Q 031208 146 VSWTTMISGLAASGDL 161 (164)
Q Consensus 146 ~~~~~li~~~~~~g~~ 161 (164)
-||+.|..+|..+|++
T Consensus 84 Dtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDL 99 (1088)
T ss_pred hHHHHHHHHHHhccch
Confidence 5666666666666654
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.33 E-value=5.2e-05 Score=56.02 Aligned_cols=143 Identities=13% Similarity=0.013 Sum_probs=107.3
Q ss_pred HHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 17 RKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 17 ~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
..++.......+.+...++++..+. .+......+..++...|+.++|.+++.+..+. .|+.. -.++.+....+
T Consensus 233 ~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~ 308 (398)
T PRK10747 233 IGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTN 308 (398)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCC
Confidence 3344444445566777777777762 46677888888999999999999999888763 44442 23455555668
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHHhcCCCCCC
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A 164 (164)
+.+++.+..+...+.. +-|......+-..+.+.+++++|.+.|+... .|+...+..+-..+.+.|+.++|
T Consensus 309 ~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 309 NPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8889999998887664 3456667788888999999999999999876 67888888899999998887654
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.33 E-value=3.7e-05 Score=61.37 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
+.+.......+....-.|+.++|.+++..... .+...+..+...+...|++++|..++++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34555666777777788888888888877652 344457777777888888888888888876542 22344556666
Q ss_pred HHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCC
Q 031208 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~ 162 (164)
..+...|+.++|...+++..+.. +.+.. +..+-..+...|+.++|...+++.. .| +...+..+...+...|+.+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 77778888888888888777652 23344 6667777777888888888887765 33 3444555566665555544
No 45
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.32 E-value=8.3e-06 Score=60.09 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=96.4
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICN--GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 119 (164)
-+.....++++.+....+.+++..++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+=||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 45567777888888888899999999998765 3334455678999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHhcccCCC----CcchHHHHHHHHHhc
Q 031208 120 LMDLYLKCGDVDGGRKMFDKMRVR----SVVSWTTMISGLAAS 158 (164)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~ 158 (164)
||+.+.+.|++..|.++.-+|... +..|+.-.+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988632 445555555555554
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=8.4e-05 Score=50.76 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC--CcH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc----c
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHV----FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF----T 81 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t 81 (164)
+...+-.+...+.+.|+++.|...|+.... |+. ..+-.+-.++...|++++|...++++.+.. |+.. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 355566667788899999999999997752 432 356777788999999999999999997643 4322 3
Q ss_pred HHHHHHHHHhc--------cchhhHHHHHHHHHHhCCCCch-HHH-----------------HHHHHHHHhcCCchhHHH
Q 031208 82 FPFVIKACIAS--------LAIEKGKEVHGLAVKAGFSRDM-FVQ-----------------STLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 82 ~~~ll~~~~~~--------~~~~~a~~~~~~m~~~g~~~~~-~~~-----------------~~ll~~~~~~~~~~~a~~ 135 (164)
+..+-.++... |+.+.|.+.++...+.. |+. ..+ ..+-..|.+.|++++|..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33444444443 67888999999887663 332 121 134456788999999999
Q ss_pred HhcccC--CCC----cchHHHHHHHHHhcCCCCCC
Q 031208 136 MFDKMR--VRS----VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 136 ~~~~m~--~~~----~~~~~~li~~~~~~g~~~~A 164 (164)
.++... .|+ ...+..+..++...|++++|
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 998875 222 35888999999999998865
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.26 E-value=4.3e-05 Score=63.54 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=46.4
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--C-CcchHHHHHHHHH
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-SVVSWTTMISGLA 156 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~ 156 (164)
..+..+-..+.+.|+.++|...+++..+.. +.+...+..+...|...|+.++|.+.++.... | +...+..+..++.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 344445555666666666666666665543 23455566666666666666666666665542 2 3334444555555
Q ss_pred hcCCCCC
Q 031208 157 ASGDLDA 163 (164)
Q Consensus 157 ~~g~~~~ 163 (164)
..|++++
T Consensus 683 ~~g~~~e 689 (1157)
T PRK11447 683 ALGDTAA 689 (1157)
T ss_pred hCCCHHH
Confidence 5555544
No 48
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=3e-05 Score=56.85 Aligned_cols=115 Identities=11% Similarity=0.145 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
.....|+..+...++++.|..+|+++.+.. |+. ...+.+.+...++-.+|.+++.+..+.. +.+........+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345667777888899999999999998765 553 4568888888888889999998887543 34566666667888
Q ss_pred HhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 125 LKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
.+.++.+.|..+.++.. .| +..+|..|..+|.+.|++++|
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 89999999999999987 45 456999999999999999876
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.23 E-value=6.7e-05 Score=47.49 Aligned_cols=90 Identities=9% Similarity=-0.071 Sum_probs=48.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
+-..+...|++++|...|+...... +.+...|..+-.++.+.|++++|...++...+.. +.+...+..+-.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444555566666666666654432 2244455555555566666666666666555432 2344555555555566666
Q ss_pred chhHHHHhcccC
Q 031208 130 VDGGRKMFDKMR 141 (164)
Q Consensus 130 ~~~a~~~~~~m~ 141 (164)
.++|...|+...
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.23 E-value=4.1e-05 Score=63.71 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=104.5
Q ss_pred HHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhh
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK 97 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 97 (164)
.....+...|+.++|..+++.-+ .+...+..+-..+.+.|++++|...|++..+.. +.+...+..+...+...|+.++
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34556778899999999988432 344556667778889999999999999987753 3356678888889999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--CC-------cchHHHHHHHHHhcCCCCCC
Q 031208 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RS-------VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 98 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~-------~~~~~~li~~~~~~g~~~~A 164 (164)
|.+.++...+.. +.+...+..+...+.+.|++++|.++++.+.. |+ ...+..+...+...|+.++|
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999999776542 23345566677788889999999999988752 21 12444455666777776554
No 51
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=2.5e-05 Score=55.21 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=93.0
Q ss_pred HHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh----ccchh
Q 031208 21 DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA----SLAIE 96 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~ 96 (164)
..+...|++++|.++++.. .+.......+..+.+.++++.|.+.++.|.+.. .|. +...+..++.. ...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHH
Confidence 3556688888888888765 556667778888889999999999999997642 333 34444444433 23588
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC---CcchHHHHHHHHHhcCCC
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR---SVVSWTTMISGLAASGDL 161 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~ 161 (164)
+|.-+|+++.. ...+++.+.+.+.-+....|++++|.+++.+..+. +..+.-.++......|+.
T Consensus 185 ~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 185 DAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 89999999754 35678888888888888999999999988876533 444555566666666654
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.19 E-value=0.00013 Score=46.15 Aligned_cols=102 Identities=13% Similarity=-0.109 Sum_probs=83.6
Q ss_pred hcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
..++.++..+...-..+...|++++|...|+... . .+...|..+-.++...|++++|...|++..... +.+...+.
T Consensus 18 ~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~ 96 (144)
T PRK15359 18 QLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVY 96 (144)
T ss_pred HHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHH
Confidence 3334444445566778889999999999999876 2 467788889999999999999999999998753 44677888
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
.+-.++.+.|+.++|...++...+..
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999988764
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.17 E-value=0.00017 Score=53.30 Aligned_cols=140 Identities=13% Similarity=0.001 Sum_probs=82.7
Q ss_pred HhccCCcHHHHHHHhccCC--CcHhHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhH
Q 031208 23 CSFYGKTDHALLVFSQIRC--PHVFTWN--LMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 98 (164)
..+.|+++.|...+.++.+ |+..... .....+...|+++.|...+++..+.. +-+......+...|.+.|+++.+
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence 3677788888888877653 4433222 22445677788888888888876654 22455667777778888888888
Q ss_pred HHHHHHHHHhCCCCch-------HHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHHHHHHHHHhcCCCCC
Q 031208 99 KEVHGLAVKAGFSRDM-------FVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 163 (164)
.+++..+.+.+..++. ..|..++....+..+.+...++++.++. .+......+..++...|+.++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 8888777776543222 1222333333333444445555555541 244455556666666665544
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.16 E-value=6.9e-05 Score=56.57 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC----------CCcHh-HHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCC
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR----------CPHVF-TWNLMIRALTIDGSSLQALLLYNLMIC---NGFRPD 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~----------~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~ 78 (164)
..+++.|-.+|.+.|++++|...++... .|.+. ..+.+...+...+++++|..+++.-.+ .-+.++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 4456666678999999998888777654 13333 367777788999999999999987632 223333
Q ss_pred c----ccHHHHHHHHHhccchhhHHHHHHHHHHh-----C-CCC-chHHHHHHHHHHHhcCCchhHHHHhcccC------
Q 031208 79 K----FTFPFVIKACIASLAIEKGKEVHGLAVKA-----G-FSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR------ 141 (164)
Q Consensus 79 ~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------ 141 (164)
. -+++-+-..|.+.|++++|.+++++.... | ..+ ....++.|-..|.+.+....|.++|.+-.
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 3 47889999999999999999999977643 1 122 24567788888999999999999988654
Q ss_pred ---CCC-cchHHHHHHHHHhcCCCCCC
Q 031208 142 ---VRS-VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 142 ---~~~-~~~~~~li~~~~~~g~~~~A 164 (164)
.|+ ..+|..|...|.+.|++|+|
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 223 35889999999999999875
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.14 E-value=0.00021 Score=51.54 Aligned_cols=145 Identities=12% Similarity=-0.034 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
.+|..+++-....+..+.-...|+..+ +.+...-.+++.-+...|+.++|.++..+-...+..|+ -..+-.+.
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l 305 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhc
Confidence 456667776666666666666777766 34566677788889999999999999999988877777 23344556
Q ss_pred hccchhhHHHHHHHHH-HhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHHhcCCCCCC
Q 031208 91 ASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A 164 (164)
+.++...-.+..++-. ..+.. +..+..|-..|.+.+.|.+|.+.|+... .|+..+|+.+-.+|.+.|+.++|
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 6677777776666554 34444 4788888999999999999999999654 67999999999999999987654
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00055 Score=46.81 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
..-+.......+.|++..|...+++...- -++|...|+.+--+|.+.|++++|..-+.+..+.. .-+....|.|.-.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHH
Confidence 34444566666667777777777766543 24566666666677777777777776666665543 22334455555555
Q ss_pred HhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 125 LKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
.-.|+.+.|..++..-. ..|..+-..+.-.....|++++|
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 66667777766665543 22555555555555666665543
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.09 E-value=0.00033 Score=51.98 Aligned_cols=134 Identities=12% Similarity=-0.014 Sum_probs=90.0
Q ss_pred CcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH-HHHHHHH--HhccchhhHHHH
Q 031208 28 KTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF-PFVIKAC--IASLAIEKGKEV 101 (164)
Q Consensus 28 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~--~~~~~~~~a~~~ 101 (164)
..+...+.++..+. .+...+..+...+...|+.++|.+++++..+.. |+.... ..++..+ ...++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 34455566666553 377778888888899999999999998887753 443321 0123322 334566777777
Q ss_pred HHHHHHhCCCCch--HHHHHHHHHHHhcCCchhHHHHhc--cc--CCCCcchHHHHHHHHHhcCCCCCC
Q 031208 102 HGLAVKAGFSRDM--FVQSTLMDLYLKCGDVDGGRKMFD--KM--RVRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 102 ~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~--~m--~~~~~~~~~~li~~~~~~g~~~~A 164 (164)
++...+.. +-|. ....++-..+.+.|++++|.+.|+ .. ..|+...+..+...+.+.|+.++|
T Consensus 322 ~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 322 IEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77666542 2233 455677788888899999999998 34 267777788888888888886654
No 58
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.08 E-value=6.3e-05 Score=53.17 Aligned_cols=129 Identities=10% Similarity=0.070 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhH---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFT---WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
.+.......+..+.+.++++.|.+.++.|.+ .|... ...++....-...+.+|..+|+++.+. ..++..+.+.+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~ 207 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGL 207 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 3455666788999999999999999999985 33322 333444443345799999999998654 56788889999
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCc-hhHHHHhcccC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV-DGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~ 141 (164)
..++...|++++|.+++.+..... +-+..+...++-+..-.|+. +.+.+++.++.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999999999999876443 33455666677777777776 66778888887
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.07 E-value=0.0002 Score=57.42 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=66.5
Q ss_pred HHHHHHhccCCcHHHHHHHhccCCC-cHhHHHHH--HHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLM--IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 94 (164)
.++..+...|+.++|..++++...| +...+..+ ...+...|++++|.++|+++.+.. +-+...+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC
Confidence 5555555556666666666655543 22222222 234455566666666666665432 1123334444555555566
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcC
Q 031208 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASG 159 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g 159 (164)
.++|.+.++.+... .|+...+-.++..+...++..+|.+.++++. .| +...+..++.+..+.|
T Consensus 152 ~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 152 GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 66666666555443 2333333223223323344434555555554 23 3334444444444444
No 60
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.06 E-value=5.1e-05 Score=45.34 Aligned_cols=77 Identities=6% Similarity=0.031 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCC--------chhHHHHhcccC----CCCcchH
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLMDLYLKCGD--------VDGGRKMFDKMR----VRSVVSW 148 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~m~----~~~~~~~ 148 (164)
-..-|..|...+++.....+++.++++|+ .|+..+|+.++.+.+++.- +...+.++++|. .|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34557777888999999999999999999 9999999999999987643 334566777775 7899999
Q ss_pred HHHHHHHHhc
Q 031208 149 TTMISGLAAS 158 (164)
Q Consensus 149 ~~li~~~~~~ 158 (164)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999988763
No 61
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.06 E-value=6.4e-05 Score=50.17 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=78.9
Q ss_pred cCCCCHHHHHHHHHHHhcc-----CCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcC----------------ChhH
Q 031208 8 GLSNDQLLVRKLLDLCSFY-----GKTDHALLVFSQIR----CPHVFTWNLMIRALTIDG----------------SSLQ 62 (164)
Q Consensus 8 g~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~----------------~~~~ 62 (164)
+-..+..+|..+++.|.+. |..+-...-+..|. +.|..+|+.||+.+-+.. +-+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 3556788899999988864 45555555555554 589999999999998732 3478
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhccch-hhHHHHHHHHHHh
Q 031208 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAI-EKGKEVHGLAVKA 108 (164)
Q Consensus 63 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~~ 108 (164)
|++++++|+..|+.||..|+..|+..+.+.+.. .+..++.-.|.+.
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkf 168 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKF 168 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988864 4566666666653
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.06 E-value=0.00044 Score=51.33 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=96.2
Q ss_pred CCCCHHHHHHH-HHHHhccCCcHHHHHHHhccC--CCcH--hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 9 LSNDQLLVRKL-LDLCSFYGKTDHALLVFSQIR--CPHV--FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 9 ~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~--~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
..|+...+-.+ -....+.|+.+.|...+.+.. .|+. ..--.....+...|+++.|...++++.+.. +-+.....
T Consensus 113 ~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ 191 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLK 191 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 34554333333 345667788888888888753 2333 233334666777888999999988887764 22455677
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH-------HHHHHHHhcCCchhHHHHhcccCC---CCcchHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS-------TLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTMIS 153 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~ 153 (164)
.+...+.+.|+++.+.+.+..+.+.+..+...... .+++.-......+...++++..+. .+...+..+..
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 88888888899998888888888876543322211 112111222223344445555542 36677777777
Q ss_pred HHHhcCCCCCC
Q 031208 154 GLAASGDLDAA 164 (164)
Q Consensus 154 ~~~~~g~~~~A 164 (164)
.+...|+.++|
T Consensus 272 ~l~~~g~~~~A 282 (409)
T TIGR00540 272 HLIDCDDHDSA 282 (409)
T ss_pred HHHHCCChHHH
Confidence 88888877654
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.05 E-value=0.0004 Score=49.31 Aligned_cols=122 Identities=15% Similarity=-0.021 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKAC 89 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~ 89 (164)
..|..+-..+.+.|+.+.|...|++.. .| +...|+.+-..+...|++++|...|++..+. .|+ ...|..+-.++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 345555556677788888888777664 23 4567777777788888888888888887653 353 45666666677
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
...|++++|.+.++...+.. |+..........+...++.++|...|.+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 77788888888887776543 4322112222223345667777777744
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00034 Score=43.47 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=40.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCc
Q 031208 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 130 (164)
...+...|++++|.+.|+.....+ +.+...+..+-..+.+.|++++|...+++..+.+ +.+...+..+-..|...|++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 334444455555555555544322 2233344444444445555555555555444332 22334444444445555555
Q ss_pred hhHHHHhccc
Q 031208 131 DGGRKMFDKM 140 (164)
Q Consensus 131 ~~a~~~~~~m 140 (164)
+.|...|+..
T Consensus 102 ~~A~~~~~~a 111 (135)
T TIGR02552 102 ESALKALDLA 111 (135)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=4.7e-05 Score=53.88 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=52.3
Q ss_pred HHHHHhccCCcHHHHHHHhccC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchh
Q 031208 19 LLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 96 (164)
+-.+|.+.|.+.+|.+.|+... .|-..||-.|-.+|.+...+..|+.+|.+-... ++.+.....-..+.+-..+..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHH
Confidence 3334445555555555554433 244444544555555555555555555444332 1222222222334444444444
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
+|.++++...+.. +.++....++-..|.-.++.+.|+++++.+
T Consensus 308 ~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 308 DALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred HHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 4444444444332 223333333334444444444444444433
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.2e-05 Score=56.21 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
.|++++-+-|+-.++-++|..+|++..+ | ....|+.+=.-|...++...|.+-|+....-. +.|-..|=.|=.+|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3566666777778889999999998764 3 34678888888999999999999999987632 335667778888888
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
-.+...=|.-.|++..+.. +.|...|.+|-++|.+.++.++|.+.|+... +.+...+..|-..|-+.++.++|
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 8888888888888877654 5578899999999999999999999998765 33456788888888777766543
No 67
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=8.2e-05 Score=56.62 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC--C-cHhHHHHHHH----------------------------------H
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIR----------------------------------A 53 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~----------------------------------~ 53 (164)
-++.+|..+=+.|+-.++.+.|.+.|++..+ | ...+|+.+=. .
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 3577888888888888888888888887653 2 2233333322 3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchh
Q 031208 54 LTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132 (164)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 132 (164)
|.+.++++.|.-.|++..+ +.| +.+....+...+.+.|+.++|.+++++.....- .|+-.--.-...+...++.++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHH
Confidence 4445555555555555544 223 444555555666666777777777766654431 222222223334445566677
Q ss_pred HHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 133 GRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 133 a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
|...+++++ ..+..++-.+...|.+.|+.+.|
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 777766665 23566777777788777776543
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.97 E-value=0.00046 Score=42.85 Aligned_cols=105 Identities=16% Similarity=0.050 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
.....+...+.+.|+.++|.+.|+... ..+...|..+-..+.+.|++++|...+++....+ +.+...+..+-..+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 344555677888999999999999875 2466788888889999999999999999987654 445667777888999
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
..|+.+.|...++...+. .|+...+..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 999999999999988876 36655544443
No 69
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=8.9e-05 Score=54.72 Aligned_cols=135 Identities=10% Similarity=0.045 Sum_probs=73.4
Q ss_pred hccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHH
Q 031208 24 SFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100 (164)
Q Consensus 24 ~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 100 (164)
-+.|++++|.+.|-+++ ..+..+.-.+.+.|--..++.+|.+++.+.... ++-|+...+.|-..|-+.|+..+|++
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhh
Confidence 34566666666666554 234444444555566666666666666544321 33356667777777777777777776
Q ss_pred HHHHHHH--------------------------------hCCCCchHHHHHHHHHHH-hcCCchhHHHHhcccCCC---C
Q 031208 101 VHGLAVK--------------------------------AGFSRDMFVQSTLMDLYL-KCGDVDGGRKMFDKMRVR---S 144 (164)
Q Consensus 101 ~~~~m~~--------------------------------~g~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~---~ 144 (164)
++-+--+ .-+.|+.+-|-.++..|. +.|++.+|.++++++.++ |
T Consensus 614 ~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 5433211 123455555555544333 345555555555555422 4
Q ss_pred cchHHHHHHHHHhcC
Q 031208 145 VVSWTTMISGLAASG 159 (164)
Q Consensus 145 ~~~~~~li~~~~~~g 159 (164)
+.....|++.+...|
T Consensus 694 ldclkflvri~~dlg 708 (840)
T KOG2003|consen 694 LDCLKFLVRIAGDLG 708 (840)
T ss_pred hHHHHHHHHHhcccc
Confidence 455555555554444
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.96 E-value=0.00068 Score=45.29 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=79.0
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHH-Hhccc--hhhHHHHHHHHHHhCCCCchHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKAC-IASLA--IEKGKEVHGLAVKAGFSRDMFVQ 117 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~-~~~~~--~~~a~~~~~~m~~~g~~~~~~~~ 117 (164)
.|...|..+-..|...|++++|...|++..+.. | +...+..+-.++ ...|+ .++|.+++++..+.. +-+...+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al 147 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTAL 147 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHH
Confidence 467789999999999999999999999987753 5 455666666654 66676 489999999998876 3466788
Q ss_pred HHHHHHHHhcCCchhHHHHhcccC
Q 031208 118 STLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..+-..+.+.|++++|...|+++.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888999999999999999875
No 71
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.00031 Score=50.31 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
.+.+..|.-+...|+...|.++-.+++-|+..-|-..+.+++..++|++-..+-.. +-++.-|..++.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 34556677788899999999999999999999999999999999999988776432 345689999999999999
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
+..+|..++..+ .+..-+..|.++|++.+|.+.--+.
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999888772 2255677788888888886654433
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.92 E-value=0.00059 Score=48.48 Aligned_cols=93 Identities=15% Similarity=-0.042 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...|+.+-..+...|+++.|...|+... .| +..+|..+-..+...|++++|.+.|++..+. .|+..........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 57788888889999999999999999875 34 4567777777888899999999999998764 3543322222223
Q ss_pred HHhccchhhHHHHHHHHH
Q 031208 89 CIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~ 106 (164)
+...++.++|...+++..
T Consensus 175 ~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 175 AESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHccCCHHHHHHHHHHHH
Confidence 345567888888886544
No 73
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00027 Score=40.00 Aligned_cols=90 Identities=14% Similarity=0.021 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 031208 49 LMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128 (164)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 128 (164)
.+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555666666666666665432 1122445555555666666666666666655443 223345555566666666
Q ss_pred CchhHHHHhccc
Q 031208 129 DVDGGRKMFDKM 140 (164)
Q Consensus 129 ~~~~a~~~~~~m 140 (164)
+.+.|...+...
T Consensus 83 ~~~~a~~~~~~~ 94 (100)
T cd00189 83 KYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHH
Confidence 666666665543
No 74
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.87 E-value=0.00087 Score=42.39 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--CcH--hHHHH--HHHHHHhcCChhHHHHHHHHHHHcCCCCCc--ccHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--PHV--FTWNL--MIRALTIDGSSLQALLLYNLMICNGFRPDK--FTFPFV 85 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~l 85 (164)
..|..++..+. .++...+...++.+.. |+. ..... +-..+...|++++|...|+........|+. ...-.+
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 45666666664 7777777777777653 322 12222 335567788888888888888776522322 233345
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
...+...|++++|...++...... .....+...-+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677788888888888886643322 3344566677888888888888888764
No 75
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=8.5e-05 Score=52.32 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHH---H-HHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIR---A-LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~---~-~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.+|..+|...-+.+..+.|+.+|.+..+.+..+|...+. . +...++.+.|..+|+...+. ++.+..-|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 578889999999999999999999987543333333322 2 33356777799999998764 566777788888999
Q ss_pred HhccchhhHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRD---MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+.++.+.+..+|+..... +.++ ...|...++.=.+.|+++.+.++.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999988755 3232 3599999999999999999888887665
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.85 E-value=0.0016 Score=51.46 Aligned_cols=130 Identities=11% Similarity=0.023 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccC--CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPF 84 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ 84 (164)
...++..+--|-......|+.++|..+++... .|| ......+...+.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 44557777778888889999999999999887 364 456778888999999999999999999875 4654 45566
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+-.++.+.|+.++|..+|++....+ .-+...+..+-..+-+.|+.++|...|+...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6778888999999999999999843 3447788888888999999999999998775
No 77
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.84 E-value=0.0014 Score=42.44 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
...|..+...+...|++++|...|++.......| ...++..+-..+...|+.++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456667777788899999999999986543222 12467788888899999999999998887653 22344555666
Q ss_pred HHHH-------hcCCchh-------HHHHhcccCCCCcchHHHHHHHHHhcCCCC
Q 031208 122 DLYL-------KCGDVDG-------GRKMFDKMRVRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 122 ~~~~-------~~~~~~~-------a~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 162 (164)
..|. +.|+++. |..+|++....+...+......+...|+|+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 168 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRFE 168 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 6666 6777664 445555555555555566666666666664
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0023 Score=43.90 Aligned_cols=129 Identities=16% Similarity=0.038 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~ 87 (164)
|....+.......+.|++..|...|.+.. .+|...|+.+=.+|-+.|+.++|..-|.+..+- .| +...++-+.-
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHH
Confidence 44456667788888999999999999876 468899999999999999999999999998763 44 3456677888
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 143 (164)
.+.-.|+.+.|..++......+ .-|..+-..|.-.-...|+++.|..+-..-..+
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 8888999999999999988776 346667777888889999999999988765543
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00063 Score=43.03 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc--hHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK----FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQS 118 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~ 118 (164)
..|..++..+ ..++...+...+..+.... |+. ...-.+-..+...|++++|...++......-.|+ ....-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 4566677776 4888999999999997753 433 2223345788899999999999999998763333 23444
Q ss_pred HHHHHHHhcCCchhHHHHhcccCCC--CcchHHHHHHHHHhcCCCCCC
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMRVR--SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A 164 (164)
.|...+...|++++|...++....+ ....+...=+.|.+.|++++|
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 5678888999999999999886643 344666677788899988765
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.81 E-value=0.0013 Score=43.91 Aligned_cols=111 Identities=10% Similarity=0.060 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHH-HhcCC--hhHHHHHHHHHHHcCCCCCcccHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRAL-TIDGS--SLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
+.|...|..+-..|...|+++.|...|++.. .| |...+..+-.++ ...|+ .++|..++++..+.. +-+...+.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~ 148 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALM 148 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHH
Confidence 3467888888889999999999999999876 34 566777776654 67777 599999999998764 22556788
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
.+-..+.+.|++++|...|+.+.+.. +|+..-+..+ ..
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~~i-~~ 186 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQLV-ES 186 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHHH-HH
Confidence 88899999999999999999998775 4555444333 54
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00037 Score=49.28 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=88.9
Q ss_pred HHHHhccCCcHHHHHHHhccCC-Cc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhc
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC-PH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK----FTFPFVIKACIAS 92 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~ 92 (164)
-.=|...|-++.|..+|..+.+ |. ...-..|+..|-...+|++|++.-+++...+-.+.. .-|+-+...+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 3445667777777777777664 32 234566777888888888888887777654422221 2234444444555
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHH-HHHHHHHhcCCchhHHHHhcccCCCC----cchHHHHHHHHHhcCCCCC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQS-TLMDLYLKCGDVDGGRKMFDKMRVRS----VVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~ 163 (164)
.+.+.|..+++...+.. |+-+--+ .+-+.+...|+++.|.+.++.+.+.| ..+...|..+|...|+.++
T Consensus 194 ~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 194 SDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 66777777777665543 3333333 33456677788888888887776443 2466777788888877654
No 82
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.80 E-value=0.0006 Score=52.33 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC--CCcH-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR--CPHV-FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKAC 89 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~ 89 (164)
.++.-+--.|...|+++.|...+++.. +|+. ..|+.|-.++-..|++.+|.+.|++.... .|+ ....+-|-..+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 344444445555666666666665543 2332 45555666666666666666665555442 222 23344455555
Q ss_pred HhccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
...|.++.|..++...... -|. ...++.|-..|-+.|++++|...+++.
T Consensus 365 ~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 5555555555555544332 122 234444555555555555555555443
No 83
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.00012 Score=55.80 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC------------------------------------C-cHhHHHHHHHHHHh
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC------------------------------------P-HVFTWNLMIRALTI 56 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------------------~-~~~~~~~li~~~~~ 56 (164)
.+...+=.+|...+++++|.++|+..++ | ...+|.++=++|+-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 3444455578888899999999987751 1 22567777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHH---HHHHHhcCCchh
Q 031208 57 DGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL---MDLYLKCGDVDG 132 (164)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l---l~~~~~~~~~~~ 132 (164)
.++.+.|++.|++-.+- .| ..++|+.+=+-+.....++.|...|+... ..++..|++. --.|.|.++++.
T Consensus 434 Qkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhH
Confidence 88888888888887763 35 45666666555666666666666665543 2344444443 335566666666
Q ss_pred HHHHhcccC--CC-CcchHHHHHHHHHhcCCCCC
Q 031208 133 GRKMFDKMR--VR-SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 133 a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 163 (164)
|.--|+... +| |.+....+-..+-+.|+.|+
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 666666554 22 44444444444555555444
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.002 Score=41.92 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=76.0
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD--KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
...+..+-..+...|++++|...|++.......++ ...+..+...+.+.|++++|...+.+..... +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566666677788888888888888866443332 2467777788888888888888888877653 22345555566
Q ss_pred HHHHhcCC--------------chhHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 031208 122 DLYLKCGD--------------VDGGRKMFDKMRVRSVVSWTTMISGLAASGD 160 (164)
Q Consensus 122 ~~~~~~~~--------------~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~ 160 (164)
..|...|+ ++.|.+++++....+...|..++.-+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 66666665 4556666666654444446666666655554
No 85
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=4.7e-05 Score=43.47 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=53.7
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHH
Q 031208 57 DGSSLQALLLYNLMICNGFR-PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (164)
.|+++.|..+++++.+..-. |+...+-.+..++.+.|+++.|..+++. .+.+. .+....-.+-.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888888888888765421 2333444478888888999999888888 32221 223344455778888899999988
Q ss_pred Hhcc
Q 031208 136 MFDK 139 (164)
Q Consensus 136 ~~~~ 139 (164)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 86
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0004 Score=51.28 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=87.6
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 031208 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 4 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 77 (164)
+...|++-+...-+..-.+.....+++.|.++|+++.+ .|..+|+.++..-....+. ..+.+-...=-+-
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKy 328 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKY 328 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccC
Confidence 44567777777666666677788999999999999873 3456666655443332211 1111111111122
Q ss_pred CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchh-------------------------
Q 031208 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG------------------------- 132 (164)
Q Consensus 78 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~------------------------- 132 (164)
...|++++-+.|+-.++.++|...|+...+.+ +.....|+.+-+-|..-++...
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence 23344555555555555555555555554433 1223344444444444444444
Q ss_pred ---------HHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 133 ---------GRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 133 ---------a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
|+-.|++.. .| |...|.+|=++|.+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 444444332 23 788999999999999988765
No 87
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.003 Score=43.62 Aligned_cols=118 Identities=11% Similarity=-0.025 Sum_probs=79.4
Q ss_pred HHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc----cch
Q 031208 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS----LAI 95 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----~~~ 95 (164)
...|+..|++++|.+...... +......=...+.+..+.+.|...+++|.+. -+..|.+-|..++.+. +.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 457888899999998888733 3333333445566777778888888888653 3444555555555443 356
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC
Q 031208 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 143 (164)
.+|.-+|++|-. ...|+..+-+-..-+....|++++|..++++...+
T Consensus 190 qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 190 QDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777778877753 24677777777777777788888888888777644
No 88
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0018 Score=48.09 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=95.8
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
++.|+.+.+.|-+.|-+.|+-..|...+-..- .-|..+...|-.-|....=++.+...|++..- +.|+..-|-.+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 44578889999999999999888887654433 24666766677777888888999999887633 67999999888
Q ss_pred HHHHH-hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 86 IKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 86 l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
+..|. +.|++..|+.++.+..+ .++-|..+...|+..+...|. .++.+.-+++
T Consensus 666 iasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 87765 56899999999999764 457788888888887776664 3355544443
No 89
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.70 E-value=0.00021 Score=54.74 Aligned_cols=152 Identities=15% Similarity=0.132 Sum_probs=109.7
Q ss_pred CCCC-HHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHH
Q 031208 9 LSND-QLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFP 83 (164)
Q Consensus 9 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~ 83 (164)
+.|+ ...|+-|-.++-..|++.+|...+++.. .| ...+.+.|-..+...|.+++|..+|..-.+ +.|. ...++
T Consensus 315 ~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~n 392 (966)
T KOG4626|consen 315 LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHN 392 (966)
T ss_pred cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhh
Confidence 3444 5668888888888888888888888765 33 345677777888888888888888887765 3443 34677
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcC
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASG 159 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g 159 (164)
-|-..|-+.|+.++|...+++..+- .|+ ...|+.+-..|-.-|+++.|...+.... +| =....+.|-+.|-.+|
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC
Confidence 7888888888888888888877653 454 5577777777888888888888877655 33 2346677888888888
Q ss_pred CCCCC
Q 031208 160 DLDAA 164 (164)
Q Consensus 160 ~~~~A 164 (164)
++.+|
T Consensus 471 ni~~A 475 (966)
T KOG4626|consen 471 NIPEA 475 (966)
T ss_pred CcHHH
Confidence 77654
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.70 E-value=0.00081 Score=48.69 Aligned_cols=89 Identities=15% Similarity=0.010 Sum_probs=45.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC-CCch--HHHHHHHHHHHhcC
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDM--FVQSTLMDLYLKCG 128 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~--~~~~~ll~~~~~~~ 128 (164)
..+...|++++|...+++..+.. +.+...+..+-..+...|++++|..++++.....- .|+. ..|..+...+...|
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 34455566666666666655432 22333445555555556666666666555543321 1121 12334555555666
Q ss_pred CchhHHHHhcccC
Q 031208 129 DVDGGRKMFDKMR 141 (164)
Q Consensus 129 ~~~~a~~~~~~m~ 141 (164)
+.++|..++++..
T Consensus 201 ~~~~A~~~~~~~~ 213 (355)
T cd05804 201 DYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHHHh
Confidence 6666666666554
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.0008 Score=37.98 Aligned_cols=92 Identities=17% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
+..+...+...|+++.|..+++...+ | +...+..+-..+...+++++|.+.+.+..... +.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 45566777889999999999998752 3 44677778888889999999999999987754 33445778888899999
Q ss_pred cchhhHHHHHHHHHHh
Q 031208 93 LAIEKGKEVHGLAVKA 108 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~ 108 (164)
|+.+.|...+....+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999998877643
No 92
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.68 E-value=0.0011 Score=40.88 Aligned_cols=83 Identities=10% Similarity=-0.084 Sum_probs=58.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHH---------------HcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHH-H
Q 031208 44 VFTWNLMIRALTIDGSSLQALLLYNLMI---------------CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-K 107 (164)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~-~ 107 (164)
..++..+|.++++.|+.+....+++..- .....|+..+..+++.+|+..+++..|.++++... .
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4455666666666666666666665541 12355777888888888888888888888888776 4
Q ss_pred hCCCCchHHHHHHHHHHHh
Q 031208 108 AGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 108 ~g~~~~~~~~~~ll~~~~~ 126 (164)
.+++.+...|..|+.-...
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 5677778888888874443
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.0035 Score=37.66 Aligned_cols=89 Identities=13% Similarity=-0.028 Sum_probs=37.0
Q ss_pred HHHHhccCCcHHHHHHHhccCC--Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCcccHHHHHHHHHh
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC--PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFR--PDKFTFPFVIKACIA 91 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~t~~~ll~~~~~ 91 (164)
...+.+.|+++.|.+.|+.+.+ |+ ...+-.+...+.+.|+++.|...|++.....-. .....+..+..++.+
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 3344444555555555544431 21 122333444444455555555555544332100 012223333444444
Q ss_pred ccchhhHHHHHHHHHHh
Q 031208 92 SLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~ 108 (164)
.|+.++|...++++.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKR 105 (119)
T ss_pred hCChHHHHHHHHHHHHH
Confidence 45555555555444443
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.66 E-value=0.0018 Score=51.14 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=96.8
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
+...+-.|-......|+.++|..+++...+ +.|+. .....+...+.+.+++++|....++..... +-+......+-
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 456677778888889999999999999987 46755 567778899999999999999999998775 33455666667
Q ss_pred HHHHhcCCchhHHHHhcccCCC---CcchHHHHHHHHHhcCCCCCC
Q 031208 122 DLYLKCGDVDGGRKMFDKMRVR---SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 164 (164)
.++.+.|++++|..+|++...+ +..+|...-.++-..|+.++|
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 7888899999999999998743 356888888888888887765
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.66 E-value=0.0056 Score=45.60 Aligned_cols=115 Identities=13% Similarity=0.164 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDL 123 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~ 123 (164)
.-|..-+ .+-..|..++|...++.+... .+-|..-.......+.+.++..+|.+.++.+... .|+ ....-.+-.+
T Consensus 308 a~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 3455444 345677888888888887664 2334444555567788888888888888888765 355 5566667788
Q ss_pred HHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCC
Q 031208 124 YLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 163 (164)
|.+.|+..+|..+++... .| |...|..|-++|...|+..+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 888888888888888765 33 67788888888888887654
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.66 E-value=0.0028 Score=42.89 Aligned_cols=140 Identities=12% Similarity=-0.052 Sum_probs=86.7
Q ss_pred HHHHhccCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhccch
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKACIASLAI 95 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~ 95 (164)
--+|...|+...|..-+++..+ | +..+|..+-..|-+.|+.+.|.+-|++-.+. .|+ -...|--=.-+|..|.+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCCh
Confidence 3366677777777777776653 3 3356777777777778888887777777653 343 23444444555777777
Q ss_pred hhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--C-CcchHHHHHHHHHhcCCC
Q 031208 96 EKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-SVVSWTTMISGLAASGDL 161 (164)
Q Consensus 96 ~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~ 161 (164)
++|.+.|++....- +.--..+|..+.-+..+.|+.+.|...|++-.+ | ...+.-.+.....+.|++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 77777777766532 222345677777777777777777777776542 2 223444444444444443
No 97
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.00036 Score=37.91 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=30.8
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+.|++++|.++++++.... +-+...+-.+..+|.+.|++++|.++++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666553 2245555566666777777777777776665
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0049 Score=41.72 Aligned_cols=134 Identities=14% Similarity=0.046 Sum_probs=104.2
Q ss_pred CCC-CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHH
Q 031208 9 LSN-DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFP 83 (164)
Q Consensus 9 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~ 83 (164)
+.| +..+|..+-..|.+.|+.+.|.+-|++.. .| +..+.|--=.-+|..|++++|...|++-...---| ...||.
T Consensus 64 ~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~e 143 (250)
T COG3063 64 HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLE 143 (250)
T ss_pred hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhh
Confidence 345 46788889999999999999999999865 23 44454444445688899999999999987654333 345788
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 143 (164)
-+--+..+.|+++.|...++.-.+.. .-.....-.+.....+.|++-.|..+++.....
T Consensus 144 N~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 144 NLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred hhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 88888899999999999999988764 223456677888888999999999998877643
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.59 E-value=0.0043 Score=47.45 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=102.6
Q ss_pred hHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC------------------CCcHhHH--HHHHHHHHhcCChhH
Q 031208 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR------------------CPHVFTW--NLMIRALTIDGSSLQ 62 (164)
Q Consensus 3 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------~~~~~~~--~~li~~~~~~~~~~~ 62 (164)
.+.+.|+++ +|+.+-..|......+-..+++.... .|....| .-+-..|-..|++++
T Consensus 136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 345566543 46666667776655555555555432 1344445 455667889999999
Q ss_pred HHHHHHHHHHcCCCCC-cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 63 ALLLYNLMICNGFRPD-KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 63 a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|++.+++-... +|+ +.-|..-.+.+-+.|++.+|.+.+++..... .-|.++-+.....+.|+|++++|.+++....
T Consensus 213 Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 213 ALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 99999998775 465 4577788899999999999999999988776 3688899999999999999999999998877
Q ss_pred CCC
Q 031208 142 VRS 144 (164)
Q Consensus 142 ~~~ 144 (164)
.++
T Consensus 290 r~~ 292 (517)
T PF12569_consen 290 RED 292 (517)
T ss_pred CCC
Confidence 554
No 100
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00091 Score=47.62 Aligned_cols=129 Identities=14% Similarity=0.003 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTW-NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
..|-+.+|--|-.+|.+..++..|..+|.+-.+ |-.+|| .-+...+-..++.++|.++|++..+.. +.+.....++
T Consensus 252 q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAci 330 (478)
T KOG1129|consen 252 QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACI 330 (478)
T ss_pred cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeee
Confidence 457888999999999999999999999998763 655555 344556677788999999999986643 3456677778
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
-..|.-.++.+-|..+++.+.+.|+ -++..|+.+--+|.-.+.+|.++.-|..
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888999999999999999986 4556777776677666777766655544
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.56 E-value=0.0036 Score=37.62 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----cccHHHHHHHHHhccchhhHHHHHHHHHHhCC--CCchHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPD----KFTFPFVIKACIASLAIEKGKEVHGLAVKAGF--SRDMFVQST 119 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ 119 (164)
++-.+...+.+.|++++|.+.|.++.+.. |+ ...+..+...+.+.|+++.|...++......- ......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34456667888999999999999997643 32 24556688999999999999999999886531 122456777
Q ss_pred HHHHHHhcCCchhHHHHhcccC
Q 031208 120 LMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+...+.+.|+.+.|.+.++++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHH
Confidence 8888999999999999999876
No 102
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.46 E-value=0.0034 Score=47.70 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=97.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC-------CC-c---HhHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR-------CP-H---VFTWNLMIRALTIDGSSLQALLLYNLMICN------GFRP 77 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~-------~~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p 77 (164)
.++.+...|+..++++.|..++.... .+ + .-+++.|-..|-+.|++++|.+++++..+. +..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 35566778888999999998888654 12 2 246899999999999999999999998542 1122
Q ss_pred C-cccHHHHHHHHHhccchhhHHHHHHHH----HHhCC-CC-chHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 78 D-KFTFPFVIKACIASLAIEKGKEVHGLA----VKAGF-SR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 78 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
. -..++-+-..|.+.+++..|.++|.+- +..|. .| ...+|..|...|.+-|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 356788889999999999999988754 33442 22 36789999999999999999999988765
No 103
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.46 E-value=0.0017 Score=41.02 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHH-----hCCCCchHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-----AGFSRDMFVQS 118 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~ 118 (164)
....++..+...|+++.|..+.+...... +.+...|..+|.++...|+...|.+.++.+.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556666777899999999999997753 45788999999999999999999999987753 48888876543
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.45 E-value=0.0043 Score=45.34 Aligned_cols=98 Identities=11% Similarity=-0.081 Sum_probs=67.9
Q ss_pred HHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhh
Q 031208 21 DLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK 97 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 97 (164)
......|+++.|...|++... .+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 345567888888888887652 355667777777888888888888888886643 2244567777778888888888
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHH
Q 031208 98 GKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 98 a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
|...+++..+.. |+.......+
T Consensus 89 A~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHH
Confidence 888888877653 4433333333
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.43 E-value=0.0073 Score=50.45 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=73.7
Q ss_pred cCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC--------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 031208 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79 (164)
Q Consensus 8 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 79 (164)
+-+.+...|-..|......++++.|++++++.. +--.-.|.++++.-...|.-+...++|++..+.. -.-
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 334467778888888888888888888888764 1223456666666666666666666666666542 122
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCchhH
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
..|..|...|.+...+++|.+++++|.+. | -...+|...++.+.+..+-+.|
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHH
Confidence 34566666666666666666666666542 3 3334455555544444443333
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.43 E-value=0.0045 Score=47.33 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=103.2
Q ss_pred CCCHHHHHH--HHHHHhccCCcHHHHHHHhccC--CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 10 SNDQLLVRK--LLDLCSFYGKTDHALLVFSQIR--CPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 10 ~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
+|+...|.. +-..|-..|+.++|.++++... .|. +..|-.--..+-+.|++++|.+.+++.+.-. .-|.+.-+.
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK 267 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSK 267 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHH
Confidence 466655644 4567778999999999999765 455 5678888888999999999999999998754 457788888
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHH--------HHHHHHHHhcCCchhHHHHhcccC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ--------STLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--------~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..+.+.+.|++++|.+++....+.+..|-...+ ...-.+|.+.|++..|++-|+.+.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999887765533222 233468889999999988777664
No 107
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.0058 Score=37.41 Aligned_cols=104 Identities=12% Similarity=0.029 Sum_probs=72.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC--cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc----hHHHHHHHHHHH
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPD--KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD----MFVQSTLMDLYL 125 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~ 125 (164)
.++-..|+.++|..+|++-...|.... ...+..+-..+...|+.++|..++++..... |+ ......+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 355667888999999999888886654 2355566777888889999999988877542 32 222233334666
Q ss_pred hcCCchhHHHHhcccCCCCcchHHHHHHHHHh
Q 031208 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
..|+.++|.+++-...-++...|..-|..|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYAD 118 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888866555566677777777654
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.41 E-value=0.0081 Score=40.99 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--CcHh----HHHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCc
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVF----TWNLMIRALTID--------GSSLQALLLYNLMICNGFRPDK 79 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~ 79 (164)
..+..+-..+.+.|+++.|...++.+.+ |+.. .+..+-.++... |++++|.+.|++..... |+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 148 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNS 148 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCC
Confidence 4566677888999999999999998852 3221 233333333333 67899999999997653 443
Q ss_pred c-cHH-----------------HHHHHHHhccchhhHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 80 F-TFP-----------------FVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 80 ~-t~~-----------------~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
. .+. .+...+.+.|++.+|...++...... -+.....+..+...|.+.|+.++|..+++.
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 211 33456788899999999999988663 122457888999999999999999999887
Q ss_pred cC
Q 031208 140 MR 141 (164)
Q Consensus 140 m~ 141 (164)
+.
T Consensus 229 l~ 230 (235)
T TIGR03302 229 LG 230 (235)
T ss_pred HH
Confidence 65
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.40 E-value=0.016 Score=41.99 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=84.7
Q ss_pred HHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhcc
Q 031208 22 LCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTI----DGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASL 93 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~ 93 (164)
.+...|+++.|.+++++.. .| |...+.. ...+.. .+..+.+.+.+.. .....|+. .....+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4556788888888887754 24 3333332 222222 3344444444433 11222332 23334455777888
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC-----CCc--chHHHHHHHHHhcCCCCCC
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-----RSV--VSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~--~~~~~li~~~~~~g~~~~A 164 (164)
++++|.+.+++..+.. +.+...+..+-..|...|++++|..++++... ++. ..|..+...+...|++++|
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888887764 34456677777888888888888888887652 121 3455677778888877654
No 110
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.36 E-value=0.0053 Score=37.94 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC-------------------CCcHhHHHHHHHHHHhcCChhHHHHHHHHH-H
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR-------------------CPHVFTWNLMIRALTIDGSSLQALLLYNLM-I 71 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~ 71 (164)
|..++..+|-++++.|+++....+.+..= .|+..+-.+++.+|+.++++..|+++.+.. .
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45688999999999999999998886531 278899999999999999999999999998 6
Q ss_pred HcCCCCCcccHHHHHHHHHhccch
Q 031208 72 CNGFRPDKFTFPFVIKACIASLAI 95 (164)
Q Consensus 72 ~~~~~p~~~t~~~ll~~~~~~~~~ 95 (164)
..+++.+...|..|+.=+....+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcCC
Confidence 778888889999999877665543
No 111
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.34 E-value=0.0088 Score=47.64 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF 82 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 82 (164)
++++..++ .++-++......+....+.....+ -+...|--+..++...|++++|+.+|..+.....--+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 44555442 333444444444444444444432 34567888999999999999999999999887666667789
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCC
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 144 (164)
--+-.+|-..|..++|.+.++..+... +-+...--.|-..|-+.|+.++|.+.++.|..||
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999988653 2234455566677889999999999999988665
No 112
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.33 E-value=0.0029 Score=44.25 Aligned_cols=99 Identities=9% Similarity=-0.036 Sum_probs=80.1
Q ss_pred HHHHHhccC--CCcHhHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccch---------
Q 031208 32 ALLVFSQIR--CPHVFTWNLMIRALTID-----GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI--------- 95 (164)
Q Consensus 32 a~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~--------- 95 (164)
..+.|.... ++|..+|-..+..|... +.++-....++.|.+.|+.-|..+|+.||..+-+..-+
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345565555 57888888888887654 56788888899999999999999999999888665321
Q ss_pred -------hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCc
Q 031208 96 -------EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130 (164)
Q Consensus 96 -------~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 130 (164)
+=+..++++|...|+.||-.+-..|+.++.+-+..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23678999999999999999999999999887653
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.32 E-value=0.006 Score=50.89 Aligned_cols=145 Identities=19% Similarity=0.223 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
-+|-++++.-...|.-+...++|++..+ ..-..|..|...|.+.+.+++|-++++.|.+. +.-....|...+..+.+
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhc
Confidence 4688888888889999999999999885 33467899999999999999999999999654 33555678888999999
Q ss_pred ccchhhHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHHHHHHHHHhcCCC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRD---MFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 161 (164)
..+-+.|..++.+..+. -|. .....-..+.-.+.|+.+++..+|+.... +-.-.|+..|+.=.++|+.
T Consensus 1577 ~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred ccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 99999999999887765 343 55566667777899999999999998872 2456899998887777654
No 114
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.0048 Score=43.54 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH-HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA-CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
.+|..+|...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998542 2233344444444 33356777799999998865 45677889999999
Q ss_pred HHhcCCchhHHHHhcccCCC------CcchHHHHHHHHHhcCCC
Q 031208 124 YLKCGDVDGGRKMFDKMRVR------SVVSWTTMISGLAASGDL 161 (164)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~ 161 (164)
+.+.++.+.|..+|+..... -...|...++-=.+.|+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999987632 234777776655555543
No 115
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0035 Score=44.42 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=80.3
Q ss_pred hhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC-CCcHh-----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 031208 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-CPHVF-----TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79 (164)
Q Consensus 6 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 79 (164)
..|.+.+..+...++..-....+++.+..++-+++ +|+.. +-.+++.. +-.-++++++.++..-.+.|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 45677777788888888888889999988877776 33321 11222333 3344688999999999999999999
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
.+++.+|+.+.+.+++.+|.++.-+|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887665
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.24 E-value=0.011 Score=44.02 Aligned_cols=115 Identities=12% Similarity=0.054 Sum_probs=85.5
Q ss_pred HhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhccchhhH
Q 031208 23 CSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKACIASLAIEKG 98 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a 98 (164)
....|+++.|...++.+. .| |..-+......+.+.++.++|.+.++++... .|+ ....-.+-.++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 345677788888877765 35 4555666677788999999999999998774 466 44555667888999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
..++....... +.|...|..|-.+|...|+..++..-..+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 98888877654 567888999999998887777665544443
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0062 Score=46.22 Aligned_cols=134 Identities=12% Similarity=0.002 Sum_probs=93.8
Q ss_pred HhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCC----CCcccHHHHHHHHHhcc
Q 031208 23 CSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMIC--NGFR----PDKFTFPFVIKACIASL 93 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~----p~~~t~~~ll~~~~~~~ 93 (164)
|.+.+.++.|.++|.+.. .| |....+-+=-..-..+.+.+|...|+.-.+ ..+. ....+++-|-++|.+.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 445666777777777655 23 445555555455567788888888887652 1111 23345777778888999
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHHh
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAA 157 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~ 157 (164)
.+++|...+++..... +.+..++.++--.|...|+++.|.+.|++-. .||-.+-+.++..+..
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999998887654 5678888888888999999999999998765 6666555555554443
No 118
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0044 Score=46.99 Aligned_cols=153 Identities=13% Similarity=0.057 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCc---HhHHHHHHHHHHhcC----------------------------
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDG---------------------------- 58 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~---------------------------- 58 (164)
+-.+.+|-++=--|...|...+|++.|.+...-| ...|-..-..|+-.+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 3457778777667777799999999999765311 223333333334444
Q ss_pred ------ChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHh--CCC----CchHHHHHHHHHHH
Q 031208 59 ------SSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKA--GFS----RDMFVQSTLMDLYL 125 (164)
Q Consensus 59 ------~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~----~~~~~~~~ll~~~~ 125 (164)
..+.|-++|.+.. ++.| |+...+-+--...+.+.+.+|..+|+..+.. .+. .-..+++.|-+.|.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHhccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 4444444444433 2444 4555555555556677888888888766521 111 13456788889999
Q ss_pred hcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 126 KCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
+.+++++|+..|++.. ..|..++.++--.|...|+++.|
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence 9999999999999754 55888999999999999998875
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0067 Score=41.98 Aligned_cols=121 Identities=8% Similarity=0.005 Sum_probs=86.7
Q ss_pred HHHHhccCCcHHHHHHHhccCCC-cHhHHHHHHHHH----HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc
Q 031208 20 LDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRAL----TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 94 (164)
+..+.+..+++.|..-+++|.+- +..+.+-|-.++ .-.+...+|+-+|++|-+. .+|+..+.+-...++...|+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 45566778899999999999864 445555555444 3446799999999999764 57888888999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+++|..++++.....-.......|.+..+.....+.+...+...+..
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999999876533333444444444444444444556666554
No 120
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.20 E-value=0.00052 Score=39.10 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=54.6
Q ss_pred cCCcHHHHHHHhccCC--C---cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhccchhhHH
Q 031208 26 YGKTDHALLVFSQIRC--P---HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~ 99 (164)
.|+++.|..+++++.+ | +...+-.+-.++.+.|++++|..++++ .. ..|+ ....-.+-.++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5788899999998862 4 344455578889999999999999988 22 2232 233345578889999999999
Q ss_pred HHHHH
Q 031208 100 EVHGL 104 (164)
Q Consensus 100 ~~~~~ 104 (164)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98875
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.0014 Score=35.48 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=41.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHH
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 120 (164)
.+.|++++|.+.|++..+.. +-+....-.+..+|.+.|++++|.++++.+.... |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 45677888888888876643 2255556667788888888888888888777653 553444333
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.015 Score=42.56 Aligned_cols=88 Identities=11% Similarity=-0.016 Sum_probs=68.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
..+...|++++|++.|++..+.. +-+...|..+..++.+.|++++|...+++..... +.+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34567789999999999987643 2245567777788889999999999998887764 335667778888888999999
Q ss_pred hHHHHhcccC
Q 031208 132 GGRKMFDKMR 141 (164)
Q Consensus 132 ~a~~~~~~m~ 141 (164)
+|...|++..
T Consensus 88 eA~~~~~~al 97 (356)
T PLN03088 88 TAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 123
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.0023 Score=40.46 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCccc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMI-----CNGFRPDKFT 81 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~t 81 (164)
....++..+...|+++.|..+..... .| |...|..+|.++...|+...|.+.|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45556777778999999999999886 34 77899999999999999999999999984 3599998765
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.023 Score=36.81 Aligned_cols=92 Identities=12% Similarity=-0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--CCc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
...|..+...+...|++++|...|+... .|+ ..+|..+-..+...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666777778999999999999874 232 2467788888999999999999999987642 22334566666
Q ss_pred HHHH-------hccchhhHHHHHHHH
Q 031208 87 KACI-------ASLAIEKGKEVHGLA 105 (164)
Q Consensus 87 ~~~~-------~~~~~~~a~~~~~~m 105 (164)
..+. +.|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 778888776666544
No 125
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.09 E-value=0.015 Score=45.16 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=71.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCcccHHHHHHHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN------GFRPDKFTFPFVIKAC 89 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~ 89 (164)
|.-.+...-..+-++.+..++.+..+-+...-+--|.-+++.+++++|-+.+...... .-+.+..-|.-+.+..
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 3333444444444445555554444333333344455555555666665555555321 1233444555555555
Q ss_pred HhccchhhHH---HHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCchhHHHHhcccCCC--CcchHHHHHHHHHh
Q 031208 90 IASLAIEKGK---EVHGLAVKAGFSRD--MFVQSTLMDLYLKCGDVDGGRKMFDKMRVR--SVVSWTTMISGLAA 157 (164)
Q Consensus 90 ~~~~~~~~a~---~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~ 157 (164)
++..+.-... .++..+.. .-+| ...|+.|.+.|.+.|++++|..+|++-.+. .+.-++.+.++|+.
T Consensus 221 s~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 221 SQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 5544433222 22222211 1233 357888888888888888888888865533 34445555555553
No 126
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.014 Score=42.26 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=17.6
Q ss_pred HHHHHhccCCcHHHHHHHhccC
Q 031208 19 LLDLCSFYGKTDHALLVFSQIR 40 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~ 40 (164)
++--|.+.+++++|..+.+++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred heeeecccccHHHHHHHHhhcC
Confidence 4556778889999999988876
No 127
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.022 Score=40.70 Aligned_cols=125 Identities=11% Similarity=0.021 Sum_probs=91.6
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCCCcH--------hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHV--------FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF-TFPFV 85 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~l 85 (164)
...-|+..|.+..++++|.++-+++.+.+. .-|.-+-..+....+.+.|..++.+-.+.+ |+-+ .-..+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~l 220 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhh
Confidence 355678888899999999888776653222 234555556666778888999888887654 3332 22344
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-+.....|++..|.+.++...+.+-.--..+...|..+|...|+.++...++..+.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56778889999999999998888755567788888999999999998888877664
No 128
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.052 Score=39.12 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=63.7
Q ss_pred CCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHH
Q 031208 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156 (164)
Q Consensus 77 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~ 156 (164)
....+.+..|.-+...|....|.++..+. + .|+..-|..-+.+++..++|++..++... .++.+.|...+.+|.
T Consensus 175 f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 175 FVGLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACL 248 (319)
T ss_pred hhcCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHH
Confidence 33457777788888889888887776554 3 48888899999999999999988887665 456688888888888
Q ss_pred hcCCCCCC
Q 031208 157 ASGDLDAA 164 (164)
Q Consensus 157 ~~g~~~~A 164 (164)
+.|+..+|
T Consensus 249 ~~~~~~eA 256 (319)
T PF04840_consen 249 KYGNKKEA 256 (319)
T ss_pred HCCCHHHH
Confidence 88876554
No 129
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.91 E-value=0.042 Score=40.10 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhHHHHHHHHHHhcCChhHHHHHHHHH-HHcCCCCCcccHHHH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQALLLYNLM-ICNGFRPDKFTFPFV 85 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~t~~~l 85 (164)
.+.++..-.+++.-+.++|+.++|.++..+..+ -|.. =.....+.+-++++.-.+..++- .+.+..| ..+.+|
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tL 334 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTL 334 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHH
Confidence 344566677788889999999999999887653 2333 22233456667777777766665 4444445 566778
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
=.-|.+.+.+.+|...++...+. .|+..+|+.+-+++.+.|+.++|..++++-.
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 88999999999999999965544 6999999999999999999999999887643
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.78 E-value=0.029 Score=44.04 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 94 (164)
.-..+-..+.+.|-...|..+|++.. .|.-.|.+|...|+-+.|..+..+-.+ -+|+..-|..+.+......-
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 33344556666666777777766554 556666666666666666666665554 24566666666555444333
Q ss_pred hhhHHHHHHHH----------------------------HHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-
Q 031208 95 IEKGKEVHGLA----------------------------VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR- 143 (164)
Q Consensus 95 ~~~a~~~~~~m----------------------------~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~- 143 (164)
+++|+++.+.. .+.+ +.-..+|-.+--+..+.+++..|.+.|..-. +|
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 44444444322 2211 1223344444444456777777777777554 45
Q ss_pred CcchHHHHHHHHHhcCCCCC
Q 031208 144 SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~ 163 (164)
+...||.+-.+|.+.|+-.+
T Consensus 552 ~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred chhhhhhhhHHHHHHhhhHH
Confidence 56788888888888776544
No 131
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.76 E-value=0.018 Score=45.61 Aligned_cols=113 Identities=9% Similarity=-0.000 Sum_probs=75.6
Q ss_pred HHHhccCCcHHHHHHHhccCCCcHhH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhH
Q 031208 21 DLCSFYGKTDHALLVFSQIRCPHVFT--WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 98 (164)
.+-....++.+|..+++.+...++.+ |..+...|+..|+++-|.++|.+-- -++-.|..|.+.|++.+|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 33444566777777777666555544 6777777888888888877776532 345677788888888888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCC
Q 031208 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 144 (164)
.++-++. .|-+.+.+.|-+-..-.-+.|++.+|.+++-.+.+|+
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD 854 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch
Confidence 7776554 3434455555555566667777777777777777664
No 132
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.035 Score=39.08 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=77.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
+.+.+++++|+..|.+-.+.. +-|.+-|+--..+|++.|..+.|.+-.+....-. +-....|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 456789999999999998742 3477888889999999999999888776665543 23467999999999999999999
Q ss_pred HHHhcccC--CCCcchHHHHHH
Q 031208 134 RKMFDKMR--VRSVVSWTTMIS 153 (164)
Q Consensus 134 ~~~~~~m~--~~~~~~~~~li~ 153 (164)
.+.|++.. .|+-.+|..=+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHH
Confidence 99998876 566556655443
No 133
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.74 E-value=0.0056 Score=32.83 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=30.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
.+...|++++|...|++..+.. +-+...+..+-.++...|++++|...+++..+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666665543 123445555556666666666666666665543
No 134
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.73 E-value=0.011 Score=31.68 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=27.3
Q ss_pred HHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
..+.+.|++++|...+++..+.. +-+...+..+-.++.+.|++++|..+|++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555555555443 224445555555555555555555555544
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.097 Score=36.25 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=90.2
Q ss_pred CCCCHH-HHHHHHHHHhccCCcHHHHHHHhccCC--CcHh----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc
Q 031208 9 LSNDQL-LVRKLLDLCSFYGKTDHALLVFSQIRC--PHVF----TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 9 ~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
..|+.. +|..++-+....|+.+.|...++.+.. |+.. ....+ +-..|++++|.+.++...+.. +.|..+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~---lEa~~~~~~A~e~y~~lL~dd-pt~~v~ 122 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML---LEATGNYKEAIEYYESLLEDD-PTDTVI 122 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH---HHHhhchhhHHHHHHHHhccC-cchhHH
Confidence 344432 345566677778899999988888652 3221 22222 344688999999999998776 556677
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+--=+...-..|+--+|.+-+.+..+. +..|...|.-+-..|...|++++|.-.++++.
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 776666666677666666666555543 36788899999999999999999999998876
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.70 E-value=0.08 Score=34.43 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC--Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC--PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFV 85 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~l 85 (164)
...+..+-..+...|++++|...|++... |+ ...+..+-..+.+.|++++|...+.+..+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566666778889999999999998752 22 357888888999999999999999998774 34 34455556
Q ss_pred HHHHHhccc
Q 031208 86 IKACIASLA 94 (164)
Q Consensus 86 l~~~~~~~~ 94 (164)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 666666665
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.64 E-value=0.11 Score=40.08 Aligned_cols=139 Identities=9% Similarity=0.021 Sum_probs=92.9
Q ss_pred hcCCCCHHHHHHHHHHHhccC-----CcHHHHHHHhccC--CCcH-hHHHHHHHHHHhcCC--------hhHHHHHHHHH
Q 031208 7 YGLSNDQLLVRKLLDLCSFYG-----KTDHALLVFSQIR--CPHV-FTWNLMIRALTIDGS--------SLQALLLYNLM 70 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~--~~~~-~~~~~li~~~~~~~~--------~~~a~~~~~~m 70 (164)
.+.+.|...|...+.+..... ..+.|..+|++.. .|+- ..|..+..++..... ...+.+...+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 455678889999999866533 3678999999876 4653 445544333322211 22233333332
Q ss_pred HHc-CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcch
Q 031208 71 ICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVS 147 (164)
Q Consensus 71 ~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~ 147 (164)
... ....+...|..+--.....|++++|...+++..... |+...|..+-..+...|+.++|.+.+++.. .|...+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 221 123344567777666667799999999999988775 688889999999999999999999998764 444333
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.62 E-value=0.011 Score=32.07 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc-chhhHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAV 106 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~ 106 (164)
..|..+-..+...|++++|...|.+..+.. +-+...|..+-.++...| ++++|.+.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344445555555555555555555554432 113334444445555555 4555555555443
No 139
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.051 Score=40.95 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHh
Q 031208 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 58 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
|++..|.++|.+-.. ..|+...|.+.|+-=.+-+.++.|..+++..+-. .|++..|-.....=-+.|.+..|..+|
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444444444444433 2355555555555555555555555555444332 255544444444444455555555444
Q ss_pred cc
Q 031208 138 DK 139 (164)
Q Consensus 138 ~~ 139 (164)
+.
T Consensus 231 er 232 (677)
T KOG1915|consen 231 ER 232 (677)
T ss_pred HH
Confidence 43
No 140
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.57 E-value=0.14 Score=41.19 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=66.6
Q ss_pred HHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhh
Q 031208 22 LCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEK 97 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~ 97 (164)
.+++ |+.++|.+++.+..+ .+...|-+|-..|-..|+.+++...+-..- .+.| |..-|..+-....+.|++++
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHH
Confidence 3444 777777777776642 345567777777777776666665543332 2333 33455555555566666666
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 98 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|.-++.+..+.. +++...+.-=...|-+.|+...|.+-|.++-
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 666666665554 3344444444555556666666655555543
No 141
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.57 E-value=0.13 Score=40.37 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=69.9
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
|..--+.|.+.+.++-|+.+|....+ .+...|......=-..|..+....+|++.... ++-.+.-|-...+-+-..
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhc
Confidence 33334444444444444444444332 23344544444444455566666666666543 222333444444555566
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|+...|..++.+..+.. +.+..+|-+-+..-.....++.|..+|.+..
T Consensus 598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 77777777777776554 3366777777777777777777777777655
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.52 E-value=0.053 Score=34.75 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=51.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCccc-HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFT-FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
-+...|++++|..+|+-.... .|.... |-.|--++-..|++++|...+....... +.+...+-.+-.++.+.|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 445667777777777776553 343333 3334444445567777777777666555 345556666666677777777
Q ss_pred hHHHHhcccC
Q 031208 132 GGRKMFDKMR 141 (164)
Q Consensus 132 ~a~~~~~~m~ 141 (164)
.|.+.|+...
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.48 E-value=0.055 Score=34.68 Aligned_cols=89 Identities=8% Similarity=-0.127 Sum_probs=70.5
Q ss_pred HHHHHhccCCcHHHHHHHhccC--CCcH-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccch
Q 031208 19 LLDLCSFYGKTDHALLVFSQIR--CPHV-FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 95 (164)
+-..+...|++++|.++|+... .|.. .-|-.|=.++-..|++++|+..|....... +-|...+-.+-.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 3445667999999999999876 4544 445555566777899999999999998765 34566777788899999999
Q ss_pred hhHHHHHHHHHHh
Q 031208 96 EKGKEVHGLAVKA 108 (164)
Q Consensus 96 ~~a~~~~~~m~~~ 108 (164)
+.|.+.|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999977654
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.014 Score=47.01 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=89.7
Q ss_pred CcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHH
Q 031208 28 KTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104 (164)
Q Consensus 28 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 104 (164)
..+.|..+|.+... .|...-|=+-..++..|++.+|.++|.+..+... -+..+|--+-++|...|.+..|.++|+.
T Consensus 627 ~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 45778888876553 3555556666678999999999999999988753 3445677899999999999999999997
Q ss_pred HH-HhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 105 AV-KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 105 m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.. +..-..++.+-+.|-.++.++|.+.+|.+..-...
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 65 55556678889999999999999999988775443
No 145
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.40 E-value=0.078 Score=41.41 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC-----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR-----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
..|-.-+....+.|++-..+..|+... ......|...+.-....+-++.+..+|++..+. .|.. -+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHH
Confidence 345555666667777777777777653 234467888888888889999999999998763 3443 6778899
Q ss_pred HHhccchhhHHHHHHHHHHh------CCCCchHHHHHHHHHHHhcCCc---hhHHHHhcccCCC--C--cchHHHHHHHH
Q 031208 89 CIASLAIEKGKEVHGLAVKA------GFSRDMFVQSTLMDLYLKCGDV---DGGRKMFDKMRVR--S--VVSWTTMISGL 155 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~--~--~~~~~~li~~~ 155 (164)
+++.++.++|.+.+...+.. ..+-+...|.-+.+..++.-+. -....+++.+..+ | ...|++|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 99999999999888876532 2245677888888888765432 2345666666633 3 46999999999
Q ss_pred HhcCCCCCC
Q 031208 156 AASGDLDAA 164 (164)
Q Consensus 156 ~~~g~~~~A 164 (164)
.+.|++|+|
T Consensus 259 Ir~g~~eka 267 (835)
T KOG2047|consen 259 IRSGLFEKA 267 (835)
T ss_pred HHhhhhHHH
Confidence 999999976
No 146
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.15 Score=38.57 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=64.4
Q ss_pred ccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhccchhhHHH
Q 031208 25 FYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF-TFPFVIKACIASLAIEKGKE 100 (164)
Q Consensus 25 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~ 100 (164)
..++++.|.++|++... .+...|---+..=.++..+..|..++++.... -|... -|---+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 35556666666665542 34444544555555566666666666665442 23221 22222333344466666666
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchH
Q 031208 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSW 148 (164)
Q Consensus 101 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~ 148 (164)
+|+.-.. .+|+...|.+.|+.=.+.+.++.|..+++... .|++..|
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~w 210 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNW 210 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHH
Confidence 6665432 35666666666666666666666666666543 4444433
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.32 E-value=0.034 Score=30.02 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-CchhHHHHhcc
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG-DVDGGRKMFDK 139 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~ 139 (164)
..|..+-..+...|++++|...|++..+.. +.+...|..+-.+|.+.| ++++|.+.|++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 345555566666666777777666666654 334556666666666666 56666666654
No 148
>PLN02789 farnesyltranstransferase
Probab=96.29 E-value=0.26 Score=35.64 Aligned_cols=143 Identities=9% Similarity=-0.004 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--Cc-HhHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--PH-VFTWNLMIRALTIDG-SSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.+++.+-..+.+.++.+.|..+.++..+ |+ ..+|+..=..+...| .+++++..++++.+.. +-+...|+..-..+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 4566667777888999999999998763 43 345555444555556 5799999999998764 23444566554455
Q ss_pred Hhccch--hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHHHHHHHHHhc
Q 031208 90 IASLAI--EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTMISGLAAS 158 (164)
Q Consensus 90 ~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~ 158 (164)
.+.++. +.+..+.+.+.+.. +-+...|+..--.+.+.|+++++.+.++++.+ .|...|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 555653 56778888887665 45678888888888889999999999998863 3667777766555443
No 149
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.18 Score=41.63 Aligned_cols=140 Identities=9% Similarity=0.037 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
.+.+|+.+-.+=.+.|.+.+|.+-|-+ ..|...|.-++....+.|.+++-.+.+...++..-.|.+. +.||-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 345677777777777777777766543 3455567788888888888888888877777776677666 468888888
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC------------------------CCCcch
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR------------------------VRSVVS 147 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------------------------~~~~~~ 147 (164)
.++..+.++++. .|+......+-+-|...|.++.|.-+|..+. -.+..|
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 888766554432 3444444444444444444444444443322 115567
Q ss_pred HHHHHHHHHhcCCCC
Q 031208 148 WTTMISGLAASGDLD 162 (164)
Q Consensus 148 ~~~li~~~~~~g~~~ 162 (164)
|.-+--+|...++|.
T Consensus 1252 WK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHHHHHHhchhhhh
Confidence 777777777766654
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.25 E-value=0.15 Score=35.79 Aligned_cols=95 Identities=9% Similarity=0.041 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhccchhhHHHHHHHHHHhC--CCCchHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK----FTFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQS 118 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~ 118 (164)
..|...+....+.|++++|...|+.+...- |+. ..+-.+-..|...|++++|...|+.+.+.- -......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 456666666667789999999999987643 443 355567788888999999999999887642 111233444
Q ss_pred HHHHHHHhcCCchhHHHHhcccC
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+...|...|+.+.|.++|+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566778899999999998776
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.098 Score=37.27 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=79.1
Q ss_pred cCCcHHHHHHHhccC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCcccHHHHHHHHHhccchhhHHHHHH
Q 031208 26 YGKTDHALLVFSQIR-CPHVFTWNLMIRALTIDGSSLQALLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 103 (164)
.+++.-++.+.++.+ +.+..+-+..-...-+.|+.+.|++-|+...+ .|..|- ..|+..+.. .+.++.+.|.+...
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHH-HhhhhHHHHHHHHH
Confidence 556666667777666 34444544444455778999999999999855 565554 467766654 46678999999999
Q ss_pred HHHHhCCC-------------Cch--------HHHHHHHHH-------HHhcCCchhHHHHhcccCC
Q 031208 104 LAVKAGFS-------------RDM--------FVQSTLMDL-------YLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 104 ~m~~~g~~-------------~~~--------~~~~~ll~~-------~~~~~~~~~a~~~~~~m~~ 142 (164)
++..+|+. ||+ ..-+.++.+ +.+.|+++.|.+-+-+|+.
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 99988762 221 223344443 3578999999999999983
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.23 E-value=0.2 Score=38.45 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
..+|...|+.-.+..-++.|..+|.+..+.+..+ ....++++|..+|. ++...|.++|+--.+.- ..++.--...++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 3457777777777777788888888887777777 66677777766664 46677777777544321 223333455667
Q ss_pred HHHhcCCchhHHHHhcccCCC------CcchHHHHHHHHHhcCC
Q 031208 123 LYLKCGDVDGGRKMFDKMRVR------SVVSWTTMISGLAASGD 160 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~ 160 (164)
.+...++-+.+.-+|+..... ....|..+|+-=...|+
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 777777777777777766532 33567777665555554
No 153
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.23 E-value=0.14 Score=31.97 Aligned_cols=125 Identities=10% Similarity=0.106 Sum_probs=90.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
...++..+.+.+.+.....+++.+.. .+....|.++..|++.. .....+.+.. .++.+....+++.|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 45678888888899999998887653 45668899999998774 4445555553 35567777899999999
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCchhHHHHhcccCCCCcchHHHHHHHHHhc
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC-GDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 158 (164)
+-.+++..++..+.. +...+..+... ++.+.|.+++.+-. +...|..++..+...
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l~~ 138 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALLDK 138 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHHcc
Confidence 988888888877532 23344555555 88999999988744 555888888877653
No 154
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.053 Score=40.90 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCCchhHHHHhc
Q 031208 117 QSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
|-.|-..-.+.|+.++|+++|+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333334444444444443
No 155
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.19 E-value=0.024 Score=44.42 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=71.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHH
Q 031208 56 IDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR 134 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 134 (164)
+.++++.|..-|..-.. ..|+ ...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.
T Consensus 531 qlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 34455566655555544 3464 4689999999999999999999999998887 456678888888889999999999
Q ss_pred HHhcccC-----CCCcchHHHHHHHHH
Q 031208 135 KMFDKMR-----VRSVVSWTTMISGLA 156 (164)
Q Consensus 135 ~~~~~m~-----~~~~~~~~~li~~~~ 156 (164)
+.++++. ..|..+...++.+-.
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9998775 125555555555444
No 156
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.19 E-value=0.03 Score=44.46 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=77.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
......|..|+.+++.++... ...--|.-+.+.|+..|+++.|+++|-+. ..++-.|+.|.+.|+|++|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 344567888888888886653 33345788899999999999999998653 2456778999999999999
Q ss_pred HHHhcccCCC--CcchHHHHHHHHHhcCCCCCC
Q 031208 134 RKMFDKMRVR--SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 134 ~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A 164 (164)
.++-.+...| .++.|-+-.+-+-+.|++.+|
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhh
Confidence 9999887766 456777777777788887665
No 157
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.13 E-value=0.029 Score=31.16 Aligned_cols=61 Identities=20% Similarity=0.091 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC---CC-cccHHHHHHHHHhccchhhHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICN--GFR---PD-KFTFPFVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
+++.+-..|...|++++|++.|++..+. ... |+ ..++..+-..+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666665321 111 11 2345555556666666666666665543
No 158
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.26 Score=40.22 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCCC------cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc--cHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCP------HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF--TFP 83 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~ 83 (164)
++++.+.|-.-|.-.|+++.+..+...+..- -..+|=.+-.+|...|++++|...|.+-.+. .|+.. .+-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccccc
Confidence 3444555555555555555555555544311 1123444555555566666666655555432 23222 222
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHh
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
-|-..+.+.|+.+.+...|+.+.+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh
Confidence 3445555556666666666655544
No 159
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.21 Score=37.21 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccC
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR 40 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 40 (164)
++-|.+....+-+.+...|+.+.|...|++..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 44566677777777777777777777777655
No 160
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.03 E-value=0.1 Score=28.44 Aligned_cols=56 Identities=11% Similarity=-0.078 Sum_probs=34.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
..|.+.++++.|.+.++++...+ +.+...+...-..+.+.|++.+|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566677777777777766542 224445555566666777777777777766654
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.99 E-value=0.027 Score=30.79 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=47.8
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-..+.+.++++.|.++++.+...+ +.+...+...-..+.+.|+++.|.+.|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 357889999999999999999875 4567788888899999999999999999876
No 162
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.96 E-value=0.023 Score=31.55 Aligned_cols=59 Identities=20% Similarity=0.140 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC---------Cc-HhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC---------PH-VFTWNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
..+++.+-..|...|++++|...|++..+ |+ ..++..+-..+...|++++|.+.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677788899999999999999987651 33 4578888889999999999999998864
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.38 Score=36.21 Aligned_cols=62 Identities=11% Similarity=-0.066 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CCcH----hHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPHV----FTWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
+...++.+-.+|.+.|++++|...|++.. .|+. .+|..+-.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677788888888999999999988754 4553 35888888889999999999888888664
No 164
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.88 E-value=0.28 Score=37.65 Aligned_cols=129 Identities=11% Similarity=0.075 Sum_probs=101.0
Q ss_pred cCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC----C-cHhHHHHHHHHHHhcCChhHHHHHHHH-HHHcCCCCCccc
Q 031208 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC----P-HVFTWNLMIRALTIDGSSLQALLLYNL-MICNGFRPDKFT 81 (164)
Q Consensus 8 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~t 81 (164)
...|+. +|...|..--+...++.|+.+|.+..+ + ++...+++|.-+| .++..-|.++|+- |+..|- +..-
T Consensus 362 ~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~y 437 (656)
T KOG1914|consen 362 DIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEY 437 (656)
T ss_pred ccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHH
Confidence 344554 588888988899999999999999873 3 6677788886655 5778999999987 444432 2223
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
-..-++-+...++-..+..+|+.....++.|+ ..+|..+|+.=+..|+++.+.++-+++
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 35668888999999999999999998877765 579999999999999999888776654
No 165
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.22 Score=37.84 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=97.1
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHh
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIA 91 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~ 91 (164)
|-.+-..|....+.++....|+.... .|..+|..--..+.-.+++++|..=|++-++ +.| +.+.|.-+--+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 66677788889999999999987652 4566777777777777889999988888876 345 56677777777788
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+.+.++...|++.++. ++.-+.+|+..-..+...+++++|.+-|+...
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 88999999999998754 45557788888899999999999999887543
No 166
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.081 Score=36.96 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH---
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD--- 122 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--- 122 (164)
.-++++..+.-.|++.-.+.++++..+..-+.++.-...|.+..-+.||.+.|...|+...+..-..+..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566666777788888899999998876666777788888888899999999999998876544566666666554
Q ss_pred --HHHhcCCchhHHHHhcccC
Q 031208 123 --LYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 123 --~~~~~~~~~~a~~~~~~m~ 141 (164)
.|.-.+++..|.+.|.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred hhheecccchHHHHHHHhhcc
Confidence 3444566677777776665
No 167
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.85 E-value=0.38 Score=37.02 Aligned_cols=130 Identities=17% Similarity=0.078 Sum_probs=90.3
Q ss_pred hhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-c
Q 031208 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF-T 81 (164)
Q Consensus 6 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t 81 (164)
..+.++|+.+...|=-.|.-.|.++.|...|+... +| |..+||.|=..++...+.++|+.-|++.++ +.|+-+ .
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~ 500 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRV 500 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeee
Confidence 34555778888887778888999999999999765 45 667899998888988999999999999877 456532 2
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHH---HhCC------CCchHHHHHHHHHHHhcCCchhHHHHh
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAV---KAGF------SRDMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~g~------~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
.--|--+|...|.+++|...+=... +.+. .++..+|..|=.++.-.++.|.+.+..
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 2334446777888888877664332 2211 224457777666666666666555443
No 168
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.72 E-value=0.36 Score=39.66 Aligned_cols=139 Identities=10% Similarity=0.027 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH---H
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK---A 88 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~---~ 88 (164)
.+-.+-.+|-+.|+.++|..++++..+ .|...-|-+-..|+.. +.++|..++.+....-+. ..-|+.+.. -
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~--~kq~~~~~e~W~k 194 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK--KKQYVGIEEIWSK 194 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh--hhcchHHHHHHHH
Confidence 344445555556666666666666542 3445555555566666 666666666655433110 001111111 0
Q ss_pred HHhc--cchhhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHH
Q 031208 89 CIAS--LAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLA 156 (164)
Q Consensus 89 ~~~~--~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~ 156 (164)
++.. -+++.-.++.+.+... |...-..++-.+-..|-..++++++..+|+.+. ..|.....-++..|.
T Consensus 195 ~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 195 LVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 0100 1122222222222221 333334555566677888889999999999876 335555566666665
No 169
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.11 Score=37.96 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=44.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH-HHHHHHHhcCC
Q 031208 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS-TLMDLYLKCGD 129 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~ 129 (164)
...+.-...+++++-.++.++..=..-|...|| +..+.+..|+..+|+++|-.+....+. |..+|- .|..+|.++++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 333444445555555555555443333333332 345555556666666655554433332 223333 33455555666
Q ss_pred chhHHHHhcccCCC
Q 031208 130 VDGGRKMFDKMRVR 143 (164)
Q Consensus 130 ~~~a~~~~~~m~~~ 143 (164)
.+.|++++-.+..|
T Consensus 444 P~lAW~~~lk~~t~ 457 (557)
T KOG3785|consen 444 PQLAWDMMLKTNTP 457 (557)
T ss_pred chHHHHHHHhcCCc
Confidence 66666655555544
No 170
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.69 E-value=0.15 Score=41.14 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=55.7
Q ss_pred cCCcHHHHHHHhccC-CCcHhHHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHH
Q 031208 26 YGKTDHALLVFSQIR-CPHVFTWNLMIRAL--TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~-~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 102 (164)
.+++..|..-.+++. +..-..|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344555555444433 22223344444444 4556666666666655443322 5556666666666666666666666
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 103 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
+..... .|+...-..+..+|+|.+.+.
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 665433 355555555666666665544
No 171
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.69 E-value=0.37 Score=36.25 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=71.4
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhccchhhHHHHHHHHHHhC--------C
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK----FTFPFVIKACIASLAIEKGKEVHGLAVKAG--------F 110 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--------~ 110 (164)
+...|+.+-.+|.+.|++++|+..|++-.+. .|+. .+|..+-.+|.+.|+.++|.+.+++..+.+ .
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 4567889999999999999999999998774 4764 358999999999999999999999887752 1
Q ss_pred CCch------HHHHHHHHHHHhcCC-----chhHHHHhcccCCC
Q 031208 111 SRDM------FVQSTLMDLYLKCGD-----VDGGRKMFDKMRVR 143 (164)
Q Consensus 111 ~~~~------~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~ 143 (164)
.|+. .-+..++....+.|. ...-.++..+...|
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aP 195 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAP 195 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhch
Confidence 1211 245566666666664 22234555555544
No 172
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.68 E-value=0.33 Score=39.88 Aligned_cols=126 Identities=15% Similarity=0.015 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CCcHhHH-HHHHHHHHhcCChhHHHHH------------------HHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTW-NLMIRALTIDGSSLQALLL------------------YNLM 70 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~-~~li~~~~~~~~~~~a~~~------------------~~~m 70 (164)
+...|..|+..+...+++++|..+.+... .|+...+ -.+-..+...++.+++..+ ...|
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 46778889999999999999999988544 2443221 1111134444444444444 2222
Q ss_pred HHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 71 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
... .-+...+-.+..+|-+.|+.+++..+++++.+.. +-|...-|.+-..|+.. ++++|.+++.+..
T Consensus 110 ~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 110 LLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 221 1222455667777788899999999999998877 55677888888888888 8888888776653
No 173
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.64 E-value=0.62 Score=36.88 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=118.1
Q ss_pred hHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 031208 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76 (164)
Q Consensus 3 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 76 (164)
.+...|+..+..-|-.=-..|-+.|..-.++.+..... +.-..||..--..|.+.+.++-|..+|....+. ++
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FP 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-cc
Confidence 45667777788888777778888888888887776554 133467888888899999999999999988774 33
Q ss_pred CCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHH
Q 031208 77 PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMIS 153 (164)
Q Consensus 77 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~ 153 (164)
.+...|......--..|..+....++++....- +-.+..|-.....+-..|++..|..++...- .| +...|-+-+.
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavK 626 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVK 626 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345555555555566688888888988887653 4566777777888888999999998888664 33 5567877777
Q ss_pred HHHhcCCCCCC
Q 031208 154 GLAASGDLDAA 164 (164)
Q Consensus 154 ~~~~~g~~~~A 164 (164)
.-.++.++|+|
T Consensus 627 le~en~e~era 637 (913)
T KOG0495|consen 627 LEFENDELERA 637 (913)
T ss_pred HhhccccHHHH
Confidence 77777766643
No 174
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.63 E-value=0.028 Score=35.27 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=45.5
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC----------CcchHHHHHHH
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR----------SVVSWTTMISG 154 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----------~~~~~~~li~~ 154 (164)
+++.+.+.+.+....++++.+...+...+....+.++..|++.+..+...++++....- ....|...+-.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHH
Confidence 45555556666666666666665554555666666666666666666666666643321 22245555556
Q ss_pred HHhcCCCCCC
Q 031208 155 LAASGDLDAA 164 (164)
Q Consensus 155 ~~~~g~~~~A 164 (164)
|.+.|++++|
T Consensus 93 y~~~~~~~~a 102 (143)
T PF00637_consen 93 YSKLGNHDEA 102 (143)
T ss_dssp HHCCTTHTTC
T ss_pred HHHcccHHHH
Confidence 6666665554
No 175
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.60 E-value=0.37 Score=37.71 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=94.6
Q ss_pred CCCHHHHHH--HHHHHhccCCcHHHHHHHhccCC--CcH-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 10 SNDQLLVRK--LLDLCSFYGKTDHALLVFSQIRC--PHV-FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 10 ~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
+|++..|+. +...+-+.|+++.|..+++..-. |+. ..|-.=-..+..+|++++|..++.+..+-. .||...-+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 577777776 46677789999999999997653 443 234444567788899999999999987754 566665556
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCC------CchHHHHHH--HHHHHhcCCchhHHHHhcccC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFS------RDMFVQSTL--MDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~------~~~~~~~~l--l~~~~~~~~~~~a~~~~~~m~ 141 (164)
-.+...+++.+++|.++.....+.|.. .-..+|-.+ -.+|.+.|++-.|++=|+.+.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 778888999999999999988887741 011223222 246778888888887777665
No 176
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.57 E-value=0.015 Score=36.54 Aligned_cols=125 Identities=7% Similarity=0.071 Sum_probs=72.0
Q ss_pred HHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc
Q 031208 19 LLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 94 (164)
+++.+.+.+.++....+++.+. ..+....+.++..|++.++.+...++++ ..+.+....+++.|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 4666666677766666666554 2456677888888888877677777666 1222333456666666666
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCC
Q 031208 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 161 (164)
++.+.-++..+.... ..+..+...++++.|.+++.+.. +...|..++..|...+++
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~~--~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKVD--DPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGCS--SSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhcC--cHHHHHHHHHHHHhcCcc
Confidence 655555544432211 11111233344455554444443 567999999999887765
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.57 E-value=0.32 Score=34.12 Aligned_cols=95 Identities=15% Similarity=0.023 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC--CcH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----cccH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHV----FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD----KFTF 82 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~ 82 (164)
...|..-+....+.|+++.|...|+.+.+ |+. ..+-.+-..|...|++++|...|+.+...- |+ ...+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHH
Confidence 44566666666778999999999998862 543 355567778899999999999999997642 32 2233
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
-.+...+...|+.+.|..+++.+.+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 334566778999999999999988763
No 178
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.53 E-value=0.34 Score=34.23 Aligned_cols=80 Identities=10% Similarity=0.006 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHH-----hCCCCchHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-----AGFSRDMFVQST 119 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 119 (164)
.+++.++..+...|+.+.+.+.++++.... +-++..|..+|.+|.+.|+...|...++++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778888889999999999999998753 45888999999999999999999999998876 489999888887
Q ss_pred HHHHHH
Q 031208 120 LMDLYL 125 (164)
Q Consensus 120 ll~~~~ 125 (164)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 777643
No 179
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.049 Score=41.60 Aligned_cols=105 Identities=8% Similarity=-0.067 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHH-HHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHH
Q 031208 58 GSSLQALLLYNLM-ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKM 136 (164)
Q Consensus 58 ~~~~~a~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (164)
....+..++|-++ .+.+.++|......|=-.|--.|+++.|...|+..+... +-|..+||.|-...+...+.++|.+.
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHH
Confidence 3456677777777 556645666666777777888899999999999988764 55788999999999999999999999
Q ss_pred hcccC--CCC-cchHHHHHHHHHhcCCCCC
Q 031208 137 FDKMR--VRS-VVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 137 ~~~m~--~~~-~~~~~~li~~~~~~g~~~~ 163 (164)
|++.. +|+ +.++..|--+|...|-++|
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 99876 453 2233334444444444433
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.28 Score=39.02 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=89.6
Q ss_pred cCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 8 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
|..-.-.+.+.-+.-+..-|+...|.++-.+++-||...|-.=+.+++..++|++-.++=+.++ ++.-|.-...
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 3334444566677888889999999999999999999999999999999999998876655542 2667888999
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHh
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
+|.+.|+.++|.+++-..- | . .-...+|.+.|++.+|.++-
T Consensus 753 ~c~~~~n~~EA~KYiprv~--~----l---~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG--G----L---QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccC--C----h---HHHHHHHHHhccHHHHHHHH
Confidence 9999999999998886642 1 1 15667778888777776543
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.42 E-value=0.17 Score=35.85 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=77.7
Q ss_pred cCCcHHHHHHHhccC-------CCcH--hHHHHHHHHHHhc-CChhHHHHHHHHHHH----cCCCCC-cccHHHHHHHHH
Q 031208 26 YGKTDHALLVFSQIR-------CPHV--FTWNLMIRALTID-GSSLQALLLYNLMIC----NGFRPD-KFTFPFVIKACI 90 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~-------~~~~--~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~p~-~~t~~~ll~~~~ 90 (164)
..+++.|...+++.. .++. ..+..+-..|-.. |+++.|++.|.+-.. .|-+-. ...+..+...+.
T Consensus 87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 336666666655543 2322 2455556666666 788888888888643 331111 235667778889
Q ss_pred hccchhhHHHHHHHHHHhCCCC-----chH-HHHHHHHHHHhcCCchhHHHHhcccCC--C------CcchHHHHHHHHH
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSR-----DMF-VQSTLMDLYLKCGDVDGGRKMFDKMRV--R------SVVSWTTMISGLA 156 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~--~------~~~~~~~li~~~~ 156 (164)
+.|++++|.+++++....-... +.. .+-..+-++...|+...|.+.|++... | .......||.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999887653321 222 233344467778999999999987652 2 1234555566654
Q ss_pred h
Q 031208 157 A 157 (164)
Q Consensus 157 ~ 157 (164)
.
T Consensus 247 ~ 247 (282)
T PF14938_consen 247 E 247 (282)
T ss_dssp T
T ss_pred h
Confidence 3
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.26 E-value=0.63 Score=32.27 Aligned_cols=143 Identities=10% Similarity=-0.032 Sum_probs=86.7
Q ss_pred HHHHhccCCcHHHHHHHhccCC--CcHhH----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh--
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC--PHVFT----WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA-- 91 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-- 91 (164)
-..+.+.|+++.|.+.|+.+.. |+... .=.+..++-+.+++++|...+++..+..-.-...-|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3344557888999999888763 43321 123456778899999999999998765322223345555555442
Q ss_pred c---------------cc---hhhHHHHHHHHHHhCCCCch------H-----HHH-------HHHHHHHhcCCchhHHH
Q 031208 92 S---------------LA---IEKGKEVHGLAVKAGFSRDM------F-----VQS-------TLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 92 ~---------------~~---~~~a~~~~~~m~~~g~~~~~------~-----~~~-------~ll~~~~~~~~~~~a~~ 135 (164)
. .| ...|...++.+++. -|+. . +.+ .+...|.+.|.+.-|..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 0 12 23455666666554 1221 1 111 22345778888888888
Q ss_pred HhcccCC--C----CcchHHHHHHHHHhcCCCCCC
Q 031208 136 MFDKMRV--R----SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 136 ~~~~m~~--~----~~~~~~~li~~~~~~g~~~~A 164 (164)
-|+.+.+ | .....-.++.+|...|..++|
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 7777763 2 334667788899888887654
No 183
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.14 E-value=0.16 Score=36.25 Aligned_cols=122 Identities=12% Similarity=0.160 Sum_probs=78.6
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhc--c----CCcHHHHHHHhccCC-------CcHhHHHHHHHHHHhcCC----hhHHH
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSF--Y----GKTDHALLVFSQIRC-------PHVFTWNLMIRALTIDGS----SLQAL 64 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~a~ 64 (164)
+.|.+.|++-+..++-+-...... . .....|.++|+.|++ ++-.++..++.. ...+ .+.+.
T Consensus 86 ~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E 163 (297)
T PF13170_consen 86 EKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERME 163 (297)
T ss_pred HHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHH
Confidence 567888999888666653333322 1 246778899999983 566777777655 3333 35667
Q ss_pred HHHHHHHHcCCCCCc--ccHHHHHHHHHhccc--hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 031208 65 LLYNLMICNGFRPDK--FTFPFVIKACIASLA--IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 65 ~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
..|+.+...|+..+- +..+.++..+-.... ...+.++++.+.+.|+.+....|..+ +..+-
T Consensus 164 ~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l-GlLal 228 (297)
T PF13170_consen 164 QCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL-GLLAL 228 (297)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH-HHHHh
Confidence 778888888888744 333444433322222 45788899999999998887775544 44443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.09 E-value=0.12 Score=31.70 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=55.6
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCchhHHHHhcccC--CCC----cchHHHHHHHHH
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRD--MFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS----VVSWTTMISGLA 156 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~----~~~~~~li~~~~ 156 (164)
+-.++-..|+.++|..++++....|.... ...+-.+-..|...|++++|..+|++.. .|+ ......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34567788999999999999999887654 3344556677888999999999998765 243 122222334556
Q ss_pred hcCCCCCC
Q 031208 157 ASGDLDAA 164 (164)
Q Consensus 157 ~~g~~~~A 164 (164)
..|+.++|
T Consensus 87 ~~gr~~eA 94 (120)
T PF12688_consen 87 NLGRPKEA 94 (120)
T ss_pred HCCCHHHH
Confidence 66666553
No 185
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.08 E-value=0.45 Score=35.98 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
..|.+.|+.-.+..-.+.|..+|-+..+.| +.++.+.+++.|..++. |+...|..+|+.-... ++.+..--+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 467888888888888999999999998888 77888899998887765 5777888888765433 12333344566677
Q ss_pred HHhcCCchhHHHHhcccCCC---C--cchHHHHHHHHHhcCCC
Q 031208 124 YLKCGDVDGGRKMFDKMRVR---S--VVSWTTMISGLAASGDL 161 (164)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~---~--~~~~~~li~~~~~~g~~ 161 (164)
+.+-++-+.|..+|+.-.++ + ...|..+|+-=...|+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence 77788888888888844322 2 34666666554444443
No 186
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.00 E-value=0.61 Score=30.67 Aligned_cols=97 Identities=13% Similarity=-0.036 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCC-chHHHH--H
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK--FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQS--T 119 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~--~ 119 (164)
..+..+...|.+.|+.+.|++.|.++......|.. ..+-.+|+.....+++..+...+.+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56788899999999999999999999887655543 466778889999999999998888766432221 121111 1
Q ss_pred HHH--HHHhcCCchhHHHHhcccC
Q 031208 120 LMD--LYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 120 ll~--~~~~~~~~~~a~~~~~~m~ 141 (164)
... .+...+++..|.+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 122 2235689999998887765
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.93 E-value=0.47 Score=36.73 Aligned_cols=122 Identities=16% Similarity=0.001 Sum_probs=79.8
Q ss_pred CCcHhHHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccc--------hhhHHHHHHHHH
Q 031208 41 CPHVFTWNLMIRALTIDG-----SSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASLA--------IEKGKEVHGLAV 106 (164)
Q Consensus 41 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~--------~~~a~~~~~~m~ 106 (164)
..|...|...+.+..... ..+.|..+|++..+. .|+- ..|..+..++..... ...+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 367788999999865533 367899999998774 4654 344444333322211 122222232222
Q ss_pred Hh-CCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHHhcCCCCCC
Q 031208 107 KA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 107 ~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A 164 (164)
.. ....+...|.++--.....|++++|...+++.. +|+...|..+-..|...|+.++|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 21 233455677777666667899999999999876 66777888888899999998765
No 188
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.93 E-value=0.18 Score=35.69 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHhcc-----CCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcC----------------ChhHHH
Q 031208 10 SNDQLLVRKLLDLCSFY-----GKTDHALLVFSQIR----CPHVFTWNLMIRALTIDG----------------SSLQAL 64 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~----------------~~~~a~ 64 (164)
+.|..+|-..+..+... +.++--..-++.|+ ++|..+|+.||+.+-+-. .-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666676666666543 23333333333333 578888888888776643 236688
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhccch-hhHHHHHHHHHH
Q 031208 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAI-EKGKEVHGLAVK 107 (164)
Q Consensus 65 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~ 107 (164)
+++++|+..|+.||..+--.|+.++.+.+-. .+..++.-.|-+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999999999999999999988754 345555555544
No 189
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.91 E-value=0.36 Score=28.29 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHH-HhCCCCchHHHHHHHH
Q 031208 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV-KAGFSRDMFVQSTLMD 122 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~ll~ 122 (164)
+.=++.+-++.+....+.|++....+.+++|-+-+++..|.++++-.+ +.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 334566667777777888888888888999998899999998888776 333 24446666665
No 190
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.72 E-value=1.1 Score=36.44 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHh--ccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 11 NDQLLVRKLLDLCS--FYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 11 ~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
|+. .|..++.++. +.|+.++|..+++... ..|..|...+-..|.+.+..++|..+|++..+. -|+..-...+
T Consensus 40 Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~l 116 (932)
T KOG2053|consen 40 PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHL 116 (932)
T ss_pred CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHH
Confidence 443 3556666555 6899999999998775 358889999999999999999999999999764 4888888889
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 127 (164)
+.+|.+.+++.+-.+.--++-+ ..+-+.+.+..++..+...
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHh
Confidence 9999999998876665555544 3355677777887777654
No 191
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.63 E-value=0.74 Score=29.96 Aligned_cols=123 Identities=10% Similarity=0.019 Sum_probs=78.1
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCccc
Q 031208 4 IIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDG--SSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 4 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
+.+.|++|+...+..+++.+.+.|++..-..++..-.-+|.......+-.+.... -.+-|++++.++.. .
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~ 91 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------A 91 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------h
Confidence 4567889999999999999999999888888877666566655555554443322 24455555555542 3
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhc
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
+..++..+...|++-+|.++........ ......++.+-.+.++...=..+|+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667788888888888888887653221 1222445566555555444333333
No 192
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.55 E-value=0.21 Score=41.00 Aligned_cols=128 Identities=10% Similarity=-0.041 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKA 88 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~ 88 (164)
...|..|=+.|+..-+...|...|+..-+ .+...+..+..-|+...+++.|..+.-.--+.. .......|..+=-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34567776777776678888888887653 466788889999999999999999833332211 11111222222233
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|.+.++...+..-|+...+.. +.|...|..+..+|.++|++..|.++|.+..
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 456667777777777766554 4578899999999999999999999997765
No 193
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=1.1 Score=31.27 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=88.2
Q ss_pred hccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHH
Q 031208 24 SFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100 (164)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 100 (164)
-..|..++|.++++...+ .|.+++-.=+...-..|+.-+|++-+.+.... +..|...|.-+-..|...|+++.|.-
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 347889999999999874 36777877777777788888999888888765 77899999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcC---CchhHHHHhcccC
Q 031208 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCG---DVDGGRKMFDKMR 141 (164)
Q Consensus 101 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~ 141 (164)
+++++.-.. +.+...+..+-+.+.-.| +.+.+.+.|.+..
T Consensus 176 ClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 176 CLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999998763 234444555555544333 4555667776654
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=1 Score=31.95 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=77.9
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc---cchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS---LAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
.|...|-.|=..|...|+.+.|..-|++-.+-. ++|...+..+-.++... ....++..+++++.+.. +-++..-.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 367789999999999999999999999986531 23444444444444333 24567889999988764 33455555
Q ss_pred HHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHH
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISG 154 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~ 154 (164)
-|--.+...|++.+|...|+.|. .|....+..+|+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 66678889999999999999987 3344455555543
No 195
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.42 E-value=1.1 Score=35.94 Aligned_cols=70 Identities=19% Similarity=0.114 Sum_probs=55.9
Q ss_pred hHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031208 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 3 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
++....+..+..+|..+.-+...+|+++.+.+.|++... .-...|+.+-..+...|.-..|+.+.++-..
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 344455678999999999999999999999999998763 3446788888888888888888888887643
No 196
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.36 E-value=0.39 Score=28.44 Aligned_cols=61 Identities=7% Similarity=-0.006 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
+..+-++.+-...+.|++....+.+++|.+.+++..|.++++-++..- .+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 566667777777888888888888888888888888888888776332 2333377766653
No 197
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.24 E-value=0.96 Score=34.21 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=87.4
Q ss_pred hccCCcHHHHHHHhccCC---Cc------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH--Hhc
Q 031208 24 SFYGKTDHALLVFSQIRC---PH------VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC--IAS 92 (164)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~ 92 (164)
.+.+++++|.++|.+..+ .+ .+.-+.++++|.... .+.....+.+..+. .| ...|-.++.+. .+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 368899999999998762 12 244577888876654 56665666666443 24 34566666655 456
Q ss_pred cchhhHHHHHHHHHHh--CCC------------CchHHHHHHHHHHHhcCCchhHHHHhcccCC--------CCcchHHH
Q 031208 93 LAIEKGKEVHGLAVKA--GFS------------RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--------RSVVSWTT 150 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~--g~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~ 150 (164)
+.+++|.+.+..-..+ +.. +|-..-++..++....|++.++..++++|.+ -|+.+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7788888777765544 322 2334445677888899999999999988862 27788888
Q ss_pred HHHHHHh
Q 031208 151 MISGLAA 157 (164)
Q Consensus 151 li~~~~~ 157 (164)
++-.+++
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 6666554
No 198
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.21 E-value=1.4 Score=33.43 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=65.5
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC---------------------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR---------------------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~---------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
-.++++..+-+.|.++.|..+..+-. ..+...|..|-....+.|+++-|.+.|.+..
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-- 374 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK-- 374 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--
Confidence 36666777777777777776654322 1345567777777777777777766666543
Q ss_pred CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 74 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-|..|+--|.-.|+.+...++.+.....| -++....++.-.|+.++..+++.+-.
T Consensus 375 -------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 375 -------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp --------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 34556666666666666666665555554 24555555666666666666665544
No 199
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.19 E-value=0.56 Score=33.19 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCcccHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMIC-----NGFRPDKFTFPFV 85 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~~l 85 (164)
.++..++..+...|+.+.+.+.++.+.. -|...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4566678888889999999999998763 3778999999999999999999999999865 5888888776666
Q ss_pred HHH
Q 031208 86 IKA 88 (164)
Q Consensus 86 l~~ 88 (164)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 655
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.10 E-value=1.8 Score=32.12 Aligned_cols=78 Identities=15% Similarity=0.020 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCC-cH------hHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCP-HV------FTWNLMIRALTI---DGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~------~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
.+...++-.|-...+++...++++.+..+ +. ..--...-++.+ .|+.+.|.+++..+....-.++..||.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33445555688889999999999999853 11 111122334455 889999999999976666778888888
Q ss_pred HHHHHHHh
Q 031208 84 FVIKACIA 91 (164)
Q Consensus 84 ~ll~~~~~ 91 (164)
.+-+.|-.
T Consensus 222 L~GRIyKD 229 (374)
T PF13281_consen 222 LLGRIYKD 229 (374)
T ss_pred HHHHHHHH
Confidence 88777733
No 201
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.97 E-value=0.93 Score=28.45 Aligned_cols=115 Identities=6% Similarity=0.020 Sum_probs=67.3
Q ss_pred cCCcHHHHHHHhccCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CC----------------CCCcccHHHHHH
Q 031208 26 YGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GF----------------RPDKFTFPFVIK 87 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~----------------~p~~~t~~~ll~ 87 (164)
.|.+++..++..+... .+..-+|-+|.-....-+=+-.+++++.+-.. .+ ..+..-+...++
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ALd 94 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLALD 94 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHHHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHHHH
Confidence 6777777787776653 44455555555555555555555555554221 11 112223455677
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+..+.|+-++..++..++.+++ ++++...-.+-.+|.+.|+..++.+++++.-
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 7788888888888888887755 6777777888889999999999988887654
No 202
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.77 Score=34.38 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHHhcCC
Q 031208 118 STLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAASGD 160 (164)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~ 160 (164)
+.+...+.+.|...++..+++.-. .+|...-+.|-+.+...+.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence 344445555666666666665433 3455544544444444433
No 203
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.89 E-value=0.94 Score=28.23 Aligned_cols=89 Identities=7% Similarity=-0.062 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
.....++..+...+.+.....+++.+...+ ..+...++.++..|++.... .....+.. ..+.+-...++..|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~-~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQ-KEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHH-HHHHHHHh------ccccCCHHHHHHHH
Confidence 345567888888899999999999998776 36777889999999887433 33333331 12334445567777
Q ss_pred HhcCCchhHHHHhcccC
Q 031208 125 LKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~m~ 141 (164)
.+.+.++.+..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 80 EKAKLYEEAVELYKKDG 96 (140)
T ss_pred HHcCcHHHHHHHHHhhc
Confidence 77777777777777665
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.82 E-value=1.3 Score=29.63 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCcccHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG---FRPDKFTFP 83 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~t~~ 83 (164)
|+...--.|-.+....|+..+|...|++... .|....-.+-++....+++..|...++++-+.. ..||. --
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 3333333444444445555555555444331 333333334444444445555555554443322 12222 22
Q ss_pred HHHHHHHhccchhhHHHHHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
.+-+.+...|+..+|+.-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 334444445555555555554443
No 205
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.78 E-value=0.64 Score=27.28 Aligned_cols=60 Identities=3% Similarity=-0.031 Sum_probs=47.3
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC---CcchHHHHHH
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR---SVVSWTTMIS 153 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~ 153 (164)
+.-++.+-+..+....+.|++.+..+.+++|.|.+++..|.++|+.++.+ +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 34456666667777788999999999999999999999999999977622 3446777665
No 206
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.68 E-value=1.1 Score=28.41 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcH--hHHHHHHHHHHhcCChhHHHHHHHHHHHcC---C--CCCccc
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHV--FTWNLMIRALTIDGSSLQALLLYNLMICNG---F--RPDKFT 81 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~--~p~~~t 81 (164)
+.++..+|...+.-... .+-+.--.++. ...|+++...+..+.....+.+++.+..-. + ..+..+
T Consensus 10 ~~~nL~~w~~fi~~~~~--------y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ss 81 (145)
T PF13762_consen 10 VLANLEVWKTFINSHLP--------YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSS 81 (145)
T ss_pred hhhhHHHHHHHHHHHHH--------HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccch
Confidence 44677778777763311 11111112222 346888888888889998888888873311 1 245679
Q ss_pred HHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 82 FPFVIKACIASLA-IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 82 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
|.+++++...... .-.+..+|..+++.+.++++.-|..+|.++.+....+
T Consensus 82 f~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 82 FHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 9999999988877 5678899999999889999999999999887764433
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.65 E-value=1.8 Score=30.67 Aligned_cols=132 Identities=10% Similarity=0.053 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcc-CCcHHHHHHHhccCC-----Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----c
Q 031208 15 LVRKLLDLCSFY-GKTDHALLVFSQIRC-----PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-----K 79 (164)
Q Consensus 15 ~~~~li~~~~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~ 79 (164)
.+..+-..|-.. |+++.|.+.|++... .+ ...+..+...+.+.|++++|.++|++........+ .
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 334444455555 666666666665441 11 23456677788999999999999999976533222 2
Q ss_pred c-cHHHHHHHHHhccchhhHHHHHHHHHHh--CCCCc--hHHHHHHHHHHHh--cCCchhHHHHhcccCCCCcc
Q 031208 80 F-TFPFVIKACIASLAIEKGKEVHGLAVKA--GFSRD--MFVQSTLMDLYLK--CGDVDGGRKMFDKMRVRSVV 146 (164)
Q Consensus 80 ~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~--~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~ 146 (164)
. .|-..+-++...||...|...++..... ++..+ -.....||.+|-. ...++.+..-|+.+.+-|..
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 1 2223334566778999999999987643 33333 3455566666643 23456666777777765543
No 208
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=1.3 Score=37.04 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
|+..|.-+++...+.|.+++-.+++.-.+ +|.+ =+.||-+|++.++..+..+++ ..||....-.+=+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 56778999999999999999888876433 4444 356899999999987765554 3477777777777
Q ss_pred HHHhccchhhHHHHHHHH
Q 031208 88 ACIASLAIEKGKEVHGLA 105 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m 105 (164)
-|...+.++.|.-++...
T Consensus 1203 rcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh
Confidence 888888887777666543
No 209
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.43 E-value=0.24 Score=29.34 Aligned_cols=58 Identities=2% Similarity=0.011 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC---CcchHHHHHHH
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR---SVVSWTTMISG 154 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~ 154 (164)
+..+-+..+....+.|++.+..+.+.+|.|.+++..|.++|+.++.+ ....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 44555555556678899999999999999999999999999988722 22277777653
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.36 E-value=1.6 Score=33.46 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=81.9
Q ss_pred HHHHHHHHHhc----cCCcHHHHHHHhccCC--CcHhHHHHHHHH-HHhcCChhHHHHHHHHHHH--cCCCC-CcccHHH
Q 031208 15 LVRKLLDLCSF----YGKTDHALLVFSQIRC--PHVFTWNLMIRA-LTIDGSSLQALLLYNLMIC--NGFRP-DKFTFPF 84 (164)
Q Consensus 15 ~~~~li~~~~~----~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~--~~~~p-~~~t~~~ 84 (164)
+|+.++..++. ....+.|.++++.+.+ |+...|...-.- +...|++++|.+.|++... ...+. ....+--
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH
Confidence 44555554443 3467788899988875 888877555443 3667899999999997643 11111 2233444
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH-HHHhcCCc-------hhHHHHhcccC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD-LYLKCGDV-------DGGRKMFDKMR 141 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~-------~~a~~~~~~m~ 141 (164)
+...+.-..++++|...+..+.+..- =+..+|.-+.. ++...++. ++|.++|.+++
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 55667778899999999999987542 23344444433 34456777 88888888776
No 211
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=3.1 Score=32.56 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=89.4
Q ss_pred HHHHHHHHHhccC--CcHHHHHHHhccCC--C--cHhHHHHHHHHHHhcCChhHHHHHHH--------HHHHcCCCCCcc
Q 031208 15 LVRKLLDLCSFYG--KTDHALLVFSQIRC--P--HVFTWNLMIRALTIDGSSLQALLLYN--------LMICNGFRPDKF 80 (164)
Q Consensus 15 ~~~~li~~~~~~~--~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~ 80 (164)
.+.+++..+.+.. ....|.+++...-+ | ..++-=.++......|+++.|.+++. .+...+..|-.+
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V 420 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV 420 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH
Confidence 4555555544422 35556666665542 3 23444556667788899999999988 555555555554
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHh------CCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHHHH
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKA------GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTM 151 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~l 151 (164)
..+...+.+.++.+.|.+++.+...- +-.--..++.-+...=.+.|.-++|.++++++.+ +|..+...+
T Consensus 421 --~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 421 --GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred --HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 55666777777776677776655431 1111223444444555677999999999998873 467778888
Q ss_pred HHHHHhc
Q 031208 152 ISGLAAS 158 (164)
Q Consensus 152 i~~~~~~ 158 (164)
+.+|++.
T Consensus 499 V~a~~~~ 505 (652)
T KOG2376|consen 499 VTAYARL 505 (652)
T ss_pred HHHHHhc
Confidence 8888764
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=93.26 E-value=1 Score=29.23 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=43.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcccH-HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPDKFTF-PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
-..|++++|..+|+-+...+ |...-| ..|-.++-..+.+++|...+...-..+. -|+...-..-.+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44566666666666665432 222222 2333333444566666666665544332 2333344445566666666666
Q ss_pred HHHhcccC
Q 031208 134 RKMFDKMR 141 (164)
Q Consensus 134 ~~~~~~m~ 141 (164)
...|+...
T Consensus 125 ~~~f~~a~ 132 (165)
T PRK15331 125 RQCFELVN 132 (165)
T ss_pred HHHHHHHH
Confidence 66666544
No 213
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.79 Score=32.90 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=41.0
Q ss_pred HhccCCcHHHHHHHhccCC----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 031208 23 CSFYGKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 76 (164)
..+.|+.+.|..-|+...+ .....||..+..| +.++.+.|++...++.+.|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 3468899999988887653 4567888888554 567899999999999887653
No 214
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.18 E-value=1.4 Score=31.13 Aligned_cols=90 Identities=14% Similarity=0.055 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMIC--NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
+..=|.+++..++|.+++...-+--+ ..++|.+. ..-|--|.+.+.+..+.++-+.-...--.-+...|..+...|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 45569999999999999997666533 34555554 444556889999999998888776643233344578777777
Q ss_pred Hh-----cCCchhHHHHhc
Q 031208 125 LK-----CGDVDGGRKMFD 138 (164)
Q Consensus 125 ~~-----~~~~~~a~~~~~ 138 (164)
.. .|.+++|.++..
T Consensus 164 Ll~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHhccccHHHHHHHHh
Confidence 65 499999988874
No 215
>PLN02789 farnesyltranstransferase
Probab=93.12 E-value=2.5 Score=30.71 Aligned_cols=141 Identities=9% Similarity=-0.026 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccC-CcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 15 LVRKLLDLCSFYG-KTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSS--LQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 15 ~~~~li~~~~~~~-~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+|+.--..+.+.| +++++...++.+.+ | +..+|+..-..+.+.|+. ++++++++++.+.. +-|-..|+..-..
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~ 151 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4444334444555 56777777776542 2 344566544444455542 56777777776543 2355677777777
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc---CCc----hhHHHHhcccC--CC-CcchHHHHHHHHHh
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC---GDV----DGGRKMFDKMR--VR-SVVSWTTMISGLAA 157 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~----~~a~~~~~~m~--~~-~~~~~~~li~~~~~ 157 (164)
+.+.|+++++.+.++++.+.+. -+...|+.....+.+. |.. +...+...+.. .| |...|+.+-..+..
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 7777888888888888877663 3445555554444433 222 23444443322 33 66677766666655
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=93.11 E-value=1.3 Score=28.77 Aligned_cols=85 Identities=13% Similarity=-0.048 Sum_probs=61.5
Q ss_pred HhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 23 CSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
+...|++++|..+|..+. .| |..-|--|-.++-..+++++|...|...-..+. -|...+=..-.++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 446899999999999876 33 434444555556667899999999998754331 22222334667888999999999
Q ss_pred HHHHHHHHh
Q 031208 100 EVHGLAVKA 108 (164)
Q Consensus 100 ~~~~~m~~~ 108 (164)
..|+.....
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 999988773
No 217
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.10 E-value=1.4 Score=27.94 Aligned_cols=93 Identities=14% Similarity=0.270 Sum_probs=69.5
Q ss_pred HhhhcCCCCH--HHHHHHHHHHhccCCcHHHHHHHhccC---------CCcHhHHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 031208 4 IIRYGLSNDQ--LLVRKLLDLCSFYGKTDHALLVFSQIR---------CPHVFTWNLMIRALTIDGS-SLQALLLYNLMI 71 (164)
Q Consensus 4 m~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 71 (164)
|.+.+..++. ...|.++.-.+..+.+.-...+++.+. ..+..+|++++.+.+...- --.+..+|+-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4555666664 345677777777788888887777765 2455679999999977776 456778888898
Q ss_pred HcCCCCCcccHHHHHHHHHhccchh
Q 031208 72 CNGFRPDKFTFPFVIKACIASLAIE 96 (164)
Q Consensus 72 ~~~~~p~~~t~~~ll~~~~~~~~~~ 96 (164)
+.+.+++...|..+|+++.+-...+
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 8888999999999999988764333
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.84 E-value=1.6 Score=27.67 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=53.3
Q ss_pred HHHHhccCCcHHHHHHHhccCC--C----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC--P----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
-....+.|+++.|.+.|+.+.. | ....-=.|+.+|.+.+++++|...+++..+..-.....-|...+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3445567888999988888763 1 223444578888899999999999999877654444467777777776655
Q ss_pred ch
Q 031208 94 AI 95 (164)
Q Consensus 94 ~~ 95 (164)
..
T Consensus 97 ~~ 98 (142)
T PF13512_consen 97 QD 98 (142)
T ss_pred Hh
Confidence 43
No 219
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.81 E-value=4.3 Score=33.64 Aligned_cols=149 Identities=10% Similarity=0.018 Sum_probs=87.7
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC-------C----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--c
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC-------P----HVFTWNLMIRALTIDGSSLQALLLYNLMICN--GFRPD--K 79 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~ 79 (164)
+...+-..+...|+++.|...+++... + ....+..+-..+...|++++|...+.+.... ...+. .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 334445567788999999888776431 1 1223334444566679999999998887442 11122 2
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCCC-CchHHH-----HHHHHHHHhcCCchhHHHHhcccCCCCc---c----
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RDMFVQ-----STLMDLYLKCGDVDGGRKMFDKMRVRSV---V---- 146 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~---- 146 (164)
..+..+.......|+.+.|...+++.....-. .....+ ...+..+...|+.+.|.+++.....+.. .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 33444556777889999999988887543111 111111 1123445567888999888866553321 1
Q ss_pred hHHHHHHHHHhcCCCCC
Q 031208 147 SWTTMISGLAASGDLDA 163 (164)
Q Consensus 147 ~~~~li~~~~~~g~~~~ 163 (164)
.+..+..++...|+.++
T Consensus 693 ~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 693 QWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHHHHHHHcCCHHH
Confidence 13345556667776554
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=2.1 Score=31.74 Aligned_cols=117 Identities=13% Similarity=-0.013 Sum_probs=77.7
Q ss_pred HHhccCCcHHHHHHHhccC------------------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 22 LCSFYGKTDHALLVFSQIR------------------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
.+.+.|++..|..-|++.. ..-...+..+..++.+.+++..|+..-++....+ ++|.-..=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 5677888888887776632 0223456777778899999999999999987643 33433222
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHH-HHHHHHhcCCchhH-HHHhcccC
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST-LMDLYLKCGDVDGG-RKMFDKMR 141 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~~~a-~~~~~~m~ 141 (164)
---.++...|+++.|...|+.+++. .|+...... |+.+--+..+.... .++|..|-
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3347888889999999999999876 565544444 44444444444333 56666653
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.67 E-value=0.16 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHhcc
Q 031208 116 VQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+|+.|-..|.+.|++++|.++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356677788888888888888776
No 222
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.49 E-value=0.51 Score=21.90 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 031208 48 NLMIRALTIDGSSLQALLLYNL 69 (164)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~ 69 (164)
+.|-..|.+.|++++|.++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444445555555554444
No 223
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.31 E-value=1.4 Score=31.46 Aligned_cols=97 Identities=11% Similarity=-0.020 Sum_probs=68.4
Q ss_pred HhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhccchhhH
Q 031208 23 CSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKACIASLAIEKG 98 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a 98 (164)
.++.+++++|...|.+..+ .|.+-|.---.+|++.|.++.|++=...-.+. .|. ..+|..|=.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456778888888887652 46667777788888888888888776666553 343 34788888888888888888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 99 KEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
.+.|+..+. +.|+-.+|-.=|+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 888776553 45666566555443
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.29 E-value=2.8 Score=31.96 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF-TFPFVI 86 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll 86 (164)
..+|+..|+..-+...++.|+.+|.+..+ +++..++++|.-++ .|+...|..+|.-=... -||.. --+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45788889999999999999999998873 77888999887655 57788888888763322 24443 335567
Q ss_pred HHHHhccchhhHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 87 KACIASLAIEKGKEVHGLAVKAGFSRD--MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.-+...++-+.|..+|+.-..+- ..+ ..+|..+|+.=+..|++..+..+=+.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 78888999999999998443221 122 4689999999999999987765555443
No 225
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.28 E-value=1.6 Score=28.66 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
...+..+.+.|++.|+.+.|.+.|.++.+ .-...+=.+|......+++..+...+.+....--.+.......-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35677889999999999999999999874 223456778888889999999999988875432222212222222
Q ss_pred HHH-----HhccchhhHHHHHHHHH
Q 031208 87 KAC-----IASLAIEKGKEVHGLAV 106 (164)
Q Consensus 87 ~~~-----~~~~~~~~a~~~~~~m~ 106 (164)
+++ ...+++..|.+.|-+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 222 34567887777776553
No 226
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.10 E-value=3.1 Score=34.39 Aligned_cols=126 Identities=13% Similarity=0.191 Sum_probs=81.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC-------CcH--hHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC--C-Cc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC-------PHV--FTWNLMIRALTIDGSSLQALLLYNLMIC----NGFR--P-DK 79 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~ 79 (164)
.+.+-..+...|+++.|...+.+... +.. .+...+-..+...|++++|...+++... .+.. | ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34444566779999999988877641 222 2344455567889999999999888643 2221 1 12
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHh--CCCCc--hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKA--GFSRD--MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..+..+-..+...|++++|...+++.... ...+. ...+..+...+...|+.+.|.+.+.+..
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23444555677789999999998877543 11122 3334445567778999999988887663
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=3.3 Score=29.34 Aligned_cols=121 Identities=9% Similarity=0.015 Sum_probs=72.1
Q ss_pred HHHHHhccCCcHHHHHHHhcc----CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH-----HH
Q 031208 19 LLDLCSFYGKTDHALLVFSQI----RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK-----AC 89 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-----~~ 89 (164)
++..+.-.|.+.-....+++. .+.+...-..|...-...|+.+.|-..|++.++..-+.|..+++.+.. .+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 333333344443333333333 234566667777777788999999999998876666677777666653 22
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHH--HHHHHHHhcCCchhHHHHhcccCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQS--TLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
.-.+++..|...+.+..... .-|....| +|+..| .|+..+|.+..+.|.+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQ 314 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 33456666666666666543 12222223 344444 4778888888888874
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.51 E-value=3.1 Score=29.23 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh-CCCCc-hHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNG----FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRD-MFVQST 119 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~-~~~~~~ 119 (164)
.|+.-+.. .+.|++.+|...|....+.. ..||.. =.|-.++...|++++|..+|..+.+. +-.|. +...--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~--yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAY--YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhH--HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 44444432 34455555555555554431 222222 22455555555555555555555432 11111 233333
Q ss_pred HHHHHHhcCCchhHHHHhcccC
Q 031208 120 LMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 120 ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|-....+.|+.++|...|+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 4444455555555555555544
No 229
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.50 E-value=3.8 Score=29.20 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=84.8
Q ss_pred cCCCCHHHHHHHHHHHhc----------------cCCcHHHHHHHhccC-----CCcHhHHHHHHHHHHhcC--ChhHHH
Q 031208 8 GLSNDQLLVRKLLDLCSF----------------YGKTDHALLVFSQIR-----CPHVFTWNLMIRALTIDG--SSLQAL 64 (164)
Q Consensus 8 g~~~~~~~~~~li~~~~~----------------~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~--~~~~a~ 64 (164)
|.+++..-+-.+++.+.. ...+.+|.++|+... -.|..+-..++....... ....-.
T Consensus 107 g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alY 186 (292)
T PF13929_consen 107 GCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALY 186 (292)
T ss_pred CCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHH
Confidence 666665555555555332 112445566666322 135556666666665522 233333
Q ss_pred HHHHHHH-HcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 65 LLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 65 ~~~~~m~-~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
++.+-+. ..|-.++..+...+|..++..++...-.++++..... +..-|...|..+|+.....|+..-...+.++
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3444443 2345677778888999999999999988888877655 5566888899999999999998877777764
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=1.1 Score=35.79 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 125 (164)
+.+--+.-+...|+...|.++-.+.+ .||..-|..-+.+++..+++++.+++-+.++ ++.-|...+..|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44555666777888888877666653 5888899999999999999887776665532 2567788899999
Q ss_pred hcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCCCCC
Q 031208 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 164 (164)
+.|+.++|.+++.....-. -.+.+|.+.|++.+|
T Consensus 756 ~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEA 789 (829)
T ss_pred hcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHH
Confidence 9999999999998876321 456667776666543
No 231
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.13 E-value=7.1 Score=31.64 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCCC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRCP---HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACI 90 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~ 90 (164)
.|...-+.+.+.+..+.|...+.+..+- ....|...=..+-..|...+|.+.|..-.. +.|+. .+-+++-..+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 4555566777788888887666655532 223344333445566788888888877765 45654 47788889999
Q ss_pred hccchhhHHH--HHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 91 ASLAIEKGKE--VHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 91 ~~~~~~~a~~--~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
+.|+...+.. +...+.+.+ +.+...|-.+-..+-+.|+.+.|.+.|...
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9998887777 888888877 466788888889999999999999998754
No 232
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.81 E-value=5.6 Score=31.61 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=77.2
Q ss_pred CcHhHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 42 PHVFTWN--LMIRALTIDGSSLQALLLYNLMICNGFRPDKF-TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 42 ~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
|....|+ .+...+=+.|+++.|...++..... +|+.+ -|..=.+.+...|++++|..++++.++.. .+|..+-+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INs 443 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINS 443 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHH
Confidence 4455554 4677788899999999999988764 46543 44445589999999999999999998777 58888877
Q ss_pred HHHHHHHhcCCchhHHHHhcccC
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.-.....+.++.++|.++.....
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhh
Confidence 88888899999999998887665
No 233
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.54 E-value=3.3 Score=26.78 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHHHHHHHHH---hccCCcHHHHHHHhccC--CCcH---hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 14 LLVRKLLDLC---SFYGKTDHALLVFSQIR--CPHV---FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 14 ~~~~~li~~~---~~~~~~~~a~~~~~~~~--~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
.+.+.||... .+.++.+.+..++.-+. .|.. .++..+ .+...|+|.+|..+|+++.... |.......|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 3445555543 45789999999999876 4544 334333 3578899999999999987653 444333444
Q ss_pred HHHHHhccchhhHHHHH-HHHHHhCCCCchHHHHHHHHHHHhcCCchhHHH
Q 031208 86 IKACIASLAIEKGKEVH-GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~-~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (164)
+..|. ...-+..++.+ +++...+-.|+. ..|++.+....+...|..
T Consensus 84 lA~CL-~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCL-YALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHH-HHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 44444 43444444444 445555544443 455666666655555544
No 234
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=4.9 Score=28.67 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRAL---TIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
+-|...|--|=..|...|+.+.|..-|..-. -+|...+..+-.++ +......++..+|++..... +-|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 3478889999999999999999999998765 24555544444443 33345779999999998753 23455666
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
.|-..+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 67788999999999999999999875 33334444443
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.46 E-value=3.7 Score=27.20 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=80.2
Q ss_pred HhccCCcHHHHHHHhccCCCcHhHHHHH-----HHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHHHH--HHHhccc
Q 031208 23 CSFYGKTDHALLVFSQIRCPHVFTWNLM-----IRALTIDGSSLQALLLYNLMICNGFRPDKF-TFPFVIK--ACIASLA 94 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~--~~~~~~~ 94 (164)
.++.+..++|..-|..+.+.+--.|-.| -......|+...|+.-|++.-...-.|-.. ...-|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3456778888888888875443333332 233567899999999999997655445443 2222222 2355677
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC
Q 031208 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
+++...-++.+-..|-+.....-..|--+-.+.|++.+|.++|..+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 887777777766555444555556676677789999999999998874
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.37 E-value=4.7 Score=28.33 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=68.5
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC--------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCc-ccHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC--------PHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDK-FTFPF 84 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-~t~~~ 84 (164)
.|+.-++. .+.|++..|..-|....+ ||..-| |-.++...|++++|-..|..+.+. +-.|.. .+.--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 57766654 456779999998887762 444444 888999999999999999999653 333332 45566
Q ss_pred HHHHHHhccchhhHHHHHHHHHHh
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
|-....+.|+.++|..+++++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 677788889999999999999876
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.34 E-value=1.2 Score=21.56 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=9.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 031208 50 MIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
+-..|...|++++|.++|++..+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.18 E-value=2 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=22.3
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR 40 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 40 (164)
+++.++|-.|+..... ..|+-.|.+.+|.++|.+.-
T Consensus 624 ~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 624 EERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred HHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcC
Confidence 4677788888876443 34555666666666666543
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.05 E-value=7.1 Score=29.83 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.++...|..|-+...+.|+++.|.+.|.+.. -|..|+-.|.-.|+.+...++-+.-...| -++..+.++
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~ 412 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAA 412 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHH
Confidence 3578899999999999999999999999988 46677778889999888877777777666 578888888
Q ss_pred HhccchhhHHHHHHH
Q 031208 90 IASLAIEKGKEVHGL 104 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~ 104 (164)
.-.|++++..+++.+
T Consensus 413 ~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 413 LLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 888998877776654
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.00 E-value=4.1 Score=31.39 Aligned_cols=78 Identities=6% Similarity=-0.068 Sum_probs=54.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhc
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKC 127 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~ 127 (164)
+-.++-+.|+.++|.+.|++|.+.. ..-+......|+.++...+.+.++..++..-.+...+. -..+|+..+-.+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 4455567799999999999997543 11234467789999999999999999998875433322 245777666444333
No 241
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.86 E-value=1.1 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=13.4
Q ss_pred HHHHHHhccchhhHHHHHHHHHHh
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
+.++|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345555555665565555555543
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=8.7 Score=31.61 Aligned_cols=117 Identities=19% Similarity=0.086 Sum_probs=79.3
Q ss_pred HHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHH----HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 17 RKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRAL----TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 17 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
..-++...+...+..|..+-+.-. .|...-..++..| -+.|++++|..-|-+-... +.| ..+|+-|...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 344556666666677776665443 3333333444444 4568899988877665432 223 3467777888
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.++...-.+++.+.+.|+ -+...-+.|+.+|.+.++.++..++.+.-.
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 888888888888888886 455667888999999998888888777665
No 243
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.24 E-value=1.4 Score=20.60 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLM 70 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m 70 (164)
+++.|-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455555556666666666665554
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.22 E-value=1.4 Score=21.34 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
+..+-..|...|++++|.++++...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567788999999999999999998874
No 245
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.16 E-value=5.8 Score=30.69 Aligned_cols=100 Identities=14% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhh
Q 031208 22 LCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEK 97 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~ 97 (164)
+.+..|+++.|...|..-. .+|.+.|+--..+|+..|++++|++==.+-++ +.|+. --|+-.-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 4567899999999998754 46888899999999999999999775444443 56754 467777888888899999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 98 GKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 98 a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
|..-+.+-++.. +.+...++-+.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999999877664 34567778887777
No 246
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=2 Score=31.08 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=73.8
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICN---GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
....+...++..-....+++++...+-+++.. -..|+... ..+++-|.+- +..++..+...-...|+=||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHH
Confidence 35566777777777788899999988888643 23444432 3444444443 5667888888778899999999999
Q ss_pred HHHHHHHhcCCchhHHHHhcccC
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+|+.+.+.+++.+|.++.-.|.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999998877665
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.74 E-value=4.3 Score=25.59 Aligned_cols=67 Identities=16% Similarity=0.032 Sum_probs=49.1
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 110 (164)
+..-+...+....+.|+-|+-.++++++... -.|++...-.+-.+|.+.|+..++.+++.+.-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3345677788889999999999999998653 356666677889999999999999999999998886
No 248
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.74 E-value=1.9 Score=21.60 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=19.3
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
.+.|-++++..++++|.+.|+-.+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666666655555543
No 249
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.72 E-value=1.1 Score=20.93 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
.+++.+-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3667788888888888888888887754
No 250
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.60 E-value=13 Score=30.95 Aligned_cols=118 Identities=10% Similarity=0.035 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC-------------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-------------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 77 (164)
-+..+|.-|-..|.+.++++-|.-.+..|.. ++ .+=.-..-.....|..++|..+|++-++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 4566788888888888888877777777752 21 11111111224556677777777766543
Q ss_pred CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 78 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..+=+-|-..|.+++|.++-+.=-+- .=..||....+.+-.+++.+.|++.|++-.
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 22333444455666666554431111 112344444444445566666666665544
No 251
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.24 E-value=7.5 Score=27.77 Aligned_cols=116 Identities=15% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHhc-cC-CcHHHHHHHhccC-----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCcccH
Q 031208 11 NDQLLVRKLLDLCSF-YG-KTDHALLVFSQIR-----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDKFTF 82 (164)
Q Consensus 11 ~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~ 82 (164)
-|..+...+++.... .+ ....-.++.+.+. .++..+-..+|..+++.++|...++++..-... +..-|..-|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 356666666665554 22 2222233333332 467778888999999999999999999988655 666788899
Q ss_pred HHHHHHHHhccchhhHHHHHH-----HHHHhCCCCchHHHHHHHHHHHh
Q 031208 83 PFVIKACIASLAIEKGKEVHG-----LAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~-----~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
..+|+.....|+......+.. .+++.|+..+...-..+-..+-+
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999999999998888877 34566777777776666555443
No 252
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.19 E-value=1.4 Score=21.76 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
+-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678999999999999999998654
No 253
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=87.78 E-value=6.5 Score=26.47 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=80.1
Q ss_pred CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhC---CCCchHHH
Q 031208 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG---FSRDMFVQ 117 (164)
Q Consensus 41 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~ 117 (164)
.|.+..--.|-.+..+.|+..+|...|.+-...-+--|....-.+.++....+++..|...++.+.+.. -.|| .-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555566788899999999999999999877677788888889999999999999999999887653 3344 33
Q ss_pred HHHHHHHHhcCCchhHHHHhcccC
Q 031208 118 STLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-.+-..|...|+.++|..-|+...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Confidence 455678888999999999888765
No 254
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.34 E-value=5.2 Score=24.91 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
+..+.++......+.|+.-....-+++|-+-+|+..|.++++-++.. +.+-..+|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 45556666777788888888888888888888888888888877632 2333334555543
No 255
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=5.5 Score=30.80 Aligned_cols=100 Identities=13% Similarity=-0.002 Sum_probs=76.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCch
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~ 131 (164)
+....|+++.|+..|.+-..-. ++|.+-|+--..+|...|++.+|.+=-.+-.+ +.|+ ..-|+..-.+..-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 4567899999999999987764 44888999999999999999988876555443 4576 457888888888889999
Q ss_pred hHHHHhcccCC--C-CcchHHHHHHHH
Q 031208 132 GGRKMFDKMRV--R-SVVSWTTMISGL 155 (164)
Q Consensus 132 ~a~~~~~~m~~--~-~~~~~~~li~~~ 155 (164)
+|..-|.+=.+ | |...++-+.+++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999987552 3 444555555544
No 256
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.25 E-value=5.8 Score=25.39 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=60.3
Q ss_pred HHHHHHHHHHh---ccCCcHHHHHHHhccC--CCc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 14 LLVRKLLDLCS---FYGKTDHALLVFSQIR--CPH---VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 14 ~~~~~li~~~~---~~~~~~~a~~~~~~~~--~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
.+.+.||+... ..++++++..+++-+. .|+ ..++.-.+ +...|+|++|..+|++..+.+..+ .|..-
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHH
Confidence 34445554433 4888999999999876 343 34554443 578899999999999998765222 45555
Q ss_pred HHHHHhccchhhHHHHH-HHHHHhCCCCch
Q 031208 86 IKACIASLAIEKGKEVH-GLAVKAGFSRDM 114 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~-~~m~~~g~~~~~ 114 (164)
+.++|-...-+-.++.+ .++...|-.|+.
T Consensus 83 L~A~CL~al~Dp~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 83 LLALCLNAKGDAEWHVHADEVLARDADADA 112 (153)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCHhH
Confidence 66666555555555544 344555544444
No 257
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.12 E-value=13 Score=29.35 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHh--------ccC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCcc
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFS--------QIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICN--GFRPDKF 80 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~--------~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~ 80 (164)
..+--.++......|+++.|.+++. .+. .....+...+...+.+.++.+.|-.++.+-... .-.+...
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 4556667788889999999999999 333 233345666778888888888888888887442 1122223
Q ss_pred cHHHHHHH----HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 81 TFPFVIKA----CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 81 t~~~ll~~----~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
...+++.- -.+.|+.++|..+++++.+.. ++|..+-..++.+|++. +.+.|..+-+.+.
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 33344333 356699999999999999865 68888999999999865 4577777777665
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.91 E-value=4.2 Score=29.23 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred CcHhHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh--c----cchhhHHHHHHHHHHhCC---
Q 031208 42 PHVFTWNLMIRALTI--DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA--S----LAIEKGKEVHGLAVKAGF--- 110 (164)
Q Consensus 42 ~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~m~~~g~--- 110 (164)
....++..++..... ...+++...+++.|.+.|++-+.++|-+..-.... . ..+..+..+++.|++...
T Consensus 58 ~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 58 NHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 334555555544433 12356777889999999999999877664433333 2 235678899999987642
Q ss_pred CCchHHHHHHHHH
Q 031208 111 SRDMFVQSTLMDL 123 (164)
Q Consensus 111 ~~~~~~~~~ll~~ 123 (164)
.++-..+..++..
T Consensus 138 s~~D~~~a~lLA~ 150 (297)
T PF13170_consen 138 SPEDYPFAALLAM 150 (297)
T ss_pred CccchhHHHHHhc
Confidence 3455666666554
No 259
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.68 E-value=2.4 Score=28.53 Aligned_cols=68 Identities=9% Similarity=-0.074 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC-------CCCcchHHHHHHHHHhcCCCCCC
Q 031208 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR-------VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A 164 (164)
+.|.+.|-++...+.--+....-.|...|. ..+.+++..++.... +.|...+.+|...|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456777777776665556666666666565 556677776665543 44677888888888888887765
No 260
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.63 E-value=11 Score=31.30 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
|.-.-.-+-..|+.+.|+.+|...+. |=++.+..|-.|+.++|.++-++ .-|...+-.|-..|-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhh
Confidence 33333333445666666666665543 33455555666777777766655 2344455566667777
Q ss_pred cCCchhHHHHhcccC
Q 031208 127 CGDVDGGRKMFDKMR 141 (164)
Q Consensus 127 ~~~~~~a~~~~~~m~ 141 (164)
.|++-+|..+|-+.+
T Consensus 980 ~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777777776665543
No 261
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.61 E-value=2.8 Score=21.03 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
..-+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34677888899999999999999988888777765
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=8.1 Score=28.87 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=66.4
Q ss_pred HHHhcCChhHHHHHHHHHHHc-----CCC---------CCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 53 ALTIDGSSLQALLLYNLMICN-----GFR---------PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~-----~~~---------p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
.+.+.|++..|..-|++.... +.. .-...+.-|.-++.+.+++..|.+.-...+..+ ++|+-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 567788888888888875331 111 223456778888899999999999999888776 45665555
Q ss_pred HHHHHHHhcCCchhHHHHhcccC
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.=-.++...|+++.|+..|+.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 55678888999999999999887
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.25 E-value=12 Score=27.94 Aligned_cols=92 Identities=10% Similarity=-0.095 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCc-ccHHHHHHHHHh---ccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 48 NLMIRALTIDGSSLQALLLYNLMICNGFR--PDK-FTFPFVIKACIA---SLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~-~t~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
..++-+|....+++..+++.+.+..---. ++. ..--...-++.+ .|+.++|.+++..+....-.++..+|..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555799999999999999999764211 111 111122334455 789999999999976666678888888777
Q ss_pred HHHH----hc-----CCchhHHHHhcc
Q 031208 122 DLYL----KC-----GDVDGGRKMFDK 139 (164)
Q Consensus 122 ~~~~----~~-----~~~~~a~~~~~~ 139 (164)
..|- .+ ..+++|...|.+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~k 251 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRK 251 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 6553 21 225566666654
No 264
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.98 E-value=4.4 Score=27.90 Aligned_cols=77 Identities=17% Similarity=-0.024 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh--CCCCchHHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA--GFSRDMFVQSTLMDLY 124 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~ 124 (164)
-+..++.+.+.+..++++...++=.+.. +.|..+-..+++-+|-.|++++|..=++-.-.. ...+-..+|..+|.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4455677888889999998887766553 447778888999999999999887655544332 2345567888888753
No 265
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=85.72 E-value=1.5 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=17.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 56 IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+.|.-.+|..+|++|..+|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 334455666666666666666653 4555544
No 266
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=85.64 E-value=7.1 Score=24.79 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 65 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
++...+.+.|++++.. -..+++.+.+.++.-.|.++++++.+.+...+..|--..++.+...|-+.
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3455667888877764 35788888888888999999999999887777666666777777777544
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.41 E-value=7.1 Score=24.64 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=56.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH---HHHHhcCC
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM---DLYLKCGD 129 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll---~~~~~~~~ 129 (164)
+.+..|+.+.|++.|.+-..- .+-+...||.-..++.-.|+.++|..=+.+..+..-.-+...+.+.+ ..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 457778888888888887653 23356678888888888888888887777666542222332222322 34556677
Q ss_pred chhHHHHhccc
Q 031208 130 VDGGRKMFDKM 140 (164)
Q Consensus 130 ~~~a~~~~~~m 140 (164)
-+.|..=|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 77777766643
No 268
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.27 E-value=5.3 Score=23.00 Aligned_cols=61 Identities=10% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCC
Q 031208 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 161 (164)
.++++.+...|+ .+....+.+-.+--..|+.+.|.++++.++ +..-.|...++++..+|+-
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 344444444442 222223333222224456666666666666 5555666666666666553
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.16 E-value=1.7 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHhcCCchhHH
Q 031208 113 DMFVQSTLMDLYLKCGDVDGGR 134 (164)
Q Consensus 113 ~~~~~~~ll~~~~~~~~~~~a~ 134 (164)
+...|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555666666655553
No 270
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=84.56 E-value=11 Score=26.15 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cH---HHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF-TF---PFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
..|..-. .+...|++++|.+.|+++... -|+.. .- -.+..++.+.++++.|...+++..+..
T Consensus 34 ~~Y~~A~-~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 34 EIYATAQ-QKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHH-HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444444 456789999999999999874 34332 22 345678899999999999999998763
No 271
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.11 E-value=11 Score=25.54 Aligned_cols=73 Identities=11% Similarity=-0.066 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh---CCCCchHHHHHHHHHHHhcCCchhHH
Q 031208 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA---GFSRDMFVQSTLMDLYLKCGDVDGGR 134 (164)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~a~ 134 (164)
+.|...|-++...+..-++..--.|.. |....+.+++.+++-..... +-.+|+..+..|...|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 678888888887776655544444444 44467888899988877653 33678999999999999999999875
No 272
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.09 E-value=2.2 Score=18.09 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCchhHHHHhc
Q 031208 119 TLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~ 138 (164)
.+-..+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444555555555555543
No 273
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.08 E-value=4.9 Score=29.64 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=44.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
-|.+.|.+++|.+.|..-.. +.| |.+++..-..+|.+..++..|+.=-...... -...+.+|+|.+.-.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHH
Confidence 35667788888888877544 345 7788888888888888777666544443322 134456666654433
Q ss_pred h
Q 031208 132 G 132 (164)
Q Consensus 132 ~ 132 (164)
.
T Consensus 176 ~ 176 (536)
T KOG4648|consen 176 E 176 (536)
T ss_pred H
Confidence 3
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.58 E-value=2.9 Score=18.63 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
+|..+-..+...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555443
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.54 E-value=13 Score=26.09 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--C----cHhHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCcccHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--P----HVFTWNLMIRALTIDGSSLQALLLYNLMIC-NGFRPDKFTFPFVI 86 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~ll 86 (164)
..|+. ...-.+.|++++|.+.|+.+.. | ...+--.++.++-+.+++++|+..+++..+ .+-.||. -|..-|
T Consensus 36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 34444 3344568999999999998873 2 223445567777889999999999999855 4444444 555556
Q ss_pred HHHHhcc-------chhhHHHHHH---HHHHh----CCCCchHH-----------H-HHHHHHHHhcCCchhHHHHhccc
Q 031208 87 KACIASL-------AIEKGKEVHG---LAVKA----GFSRDMFV-----------Q-STLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 87 ~~~~~~~-------~~~~a~~~~~---~m~~~----g~~~~~~~-----------~-~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
.+++... |...+.+-+. +++.. ...||... + -.+-..|.+.|.+..|..-+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5554432 3333444444 43332 12222211 1 13345778999999999888888
Q ss_pred CCC------CcchHHHHHHHHHhcCCCCCC
Q 031208 141 RVR------SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 141 ~~~------~~~~~~~li~~~~~~g~~~~A 164 (164)
.+. ....+-.|..+|-..|-.++|
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 732 234666677888887776654
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.10 E-value=9.8 Score=24.40 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=35.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCc---ccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPDK---FTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
...++++++..++..|.- +.|+. .+|. -..+...|++.+|.++++++...+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 447888888888888865 34543 3333 334567788999999999887664
No 277
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.91 E-value=15 Score=26.50 Aligned_cols=58 Identities=9% Similarity=-0.123 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 105 (164)
.+..-..|..+|.+.+|.++.++..... +.+...+-.++..+...|+--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444455666777777777766665543 346666667777777777655555444443
No 278
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.83 E-value=7.9 Score=23.10 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHH
Q 031208 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~ 153 (164)
++|..+-+.+...+-. .+.+--+-+..+...|+++.|..+.+...-||...|-++-.
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce 78 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE 78 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH
Confidence 3444444444433311 22333333444555666666666666666666666655543
No 279
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=82.46 E-value=12 Score=25.02 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=84.0
Q ss_pred HHHHhccCCcHHHHHHHhccCC--Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc-
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC--PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS- 92 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~- 92 (164)
-..+...|++..|.+.|+.+.. |+ ....=.+..++-+.|+++.|...+++..+.--.-...-+...+.+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3456678999999999998862 22 1334456778899999999999999987643111222333333333321
Q ss_pred ------------cchhhHHHHHHHHHHhCCCCch-H----------HH-------HHHHHHHHhcCCchhHHHHhcccCC
Q 031208 93 ------------LAIEKGKEVHGLAVKAGFSRDM-F----------VQ-------STLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 93 ------------~~~~~a~~~~~~m~~~g~~~~~-~----------~~-------~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
+...+|...++.+.+.- |+. . +. -.+.+.|.+.|.+..|..-++.+.+
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 12345677777766542 221 1 11 1234567788888888888887762
Q ss_pred --CCc----chHHHHHHHHHhcCCCC
Q 031208 143 --RSV----VSWTTMISGLAASGDLD 162 (164)
Q Consensus 143 --~~~----~~~~~li~~~~~~g~~~ 162 (164)
|++ ...-.++.+|.+.|..+
T Consensus 170 ~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 170 NYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HCCCCchHHHHHHHHHHHHHHhCChH
Confidence 333 36677888888887643
No 280
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.23 E-value=11 Score=28.55 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=68.4
Q ss_pred CCHHHHHHH-HHHHhccCCcHHHHHHHhccCCCcH-hHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 11 NDQLLVRKL-LDLCSFYGKTDHALLVFSQIRCPHV-FTWNLMIRALTI--DGSSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 11 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
|....|..+ ..++.-.|+.+.|..+-....+.|. ..+...+++.+- ..+.+.+...|++-... .|+...-.+.-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~ 243 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSAS 243 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHh
Confidence 333444444 2244557777777766555443322 234444444332 34556666666655443 34443332222
Q ss_pred H-------------HHHhccchhhHHHHHHHHHHh---CCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC
Q 031208 87 K-------------ACIASLAIEKGKEVHGLAVKA---GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 87 ~-------------~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
. -..+.|++..|.+.+.+.... ...|+...|...-.+..+.|+.++|+.--++...
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 1 225556777777777666532 3445555666666666677777777666655543
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.87 E-value=17 Score=26.20 Aligned_cols=116 Identities=10% Similarity=-0.026 Sum_probs=64.4
Q ss_pred HhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 23 CSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
....|++..|..+|+.... .+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3446677777777666542 2334455566777788888888888877644322222222223344444444444444
Q ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 100 EVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 100 ~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+.+..-. .| |...--.+-..|...|+.+.|.+.+=.+.
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444333 24 45555566666777777777766554443
No 282
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=25 Score=28.21 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=61.0
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
.+..-|..|=.+....+++..|.+-|..-. .|..|+-.+...|+.+....+-+..++.|. .|...
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence 345567778888888888888877776654 456777777788887766666666666663 35556
Q ss_pred HHHHhcCCchhHHHHhcccC
Q 031208 122 DLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~ 141 (164)
-+|...|+++++.+++-+-.
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 67788899999988887653
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.76 E-value=18 Score=28.14 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=55.3
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCchhHHHHhcccCC---CC--cchHHHHHHHHHhc
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RS--VVSWTTMISGLAAS 158 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~--~~~~~~li~~~~~~ 158 (164)
+-.++-+.|+.++|.+.+.+|.+.. ..-...+...|+.++...+.+.++..++.+-.+ |. ..+|++.+--+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3455567799999999999997653 223456888999999999999999999987652 32 35777766554444
Q ss_pred CC
Q 031208 159 GD 160 (164)
Q Consensus 159 g~ 160 (164)
|+
T Consensus 345 ~d 346 (539)
T PF04184_consen 345 GD 346 (539)
T ss_pred cc
Confidence 43
No 284
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=81.27 E-value=2.5 Score=26.46 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=27.8
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
..-+.|.-.+|-.+|+.|+++|-+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44556788899999999999998887 577777643
No 285
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=81.07 E-value=2.9 Score=23.84 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=23.0
Q ss_pred hcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCC
Q 031208 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 161 (164)
...+.+++.++++.++.++...|....+++-..|+.
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 344566666666666666666677776666666553
No 286
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.56 E-value=3.9 Score=25.46 Aligned_cols=45 Identities=4% Similarity=0.044 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+..+-+..+....+.|++.+....+.++.+.+++..|.++|+.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445555666677889999999999999999999999999999887
No 287
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.41 E-value=5.4 Score=28.62 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=20.6
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHH
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV 116 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 116 (164)
|+.-|+.-.+.||+++|.++++|.++.|+.--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 45666666666666666666666666665433333
No 288
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.39 E-value=14 Score=24.44 Aligned_cols=53 Identities=11% Similarity=-0.091 Sum_probs=30.9
Q ss_pred hcCChhHHHHHHHHHHH-cCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 56 IDGSSLQALLLYNLMIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
...+.+......+..++ ....|+...|..++.++...|+.++|.++.+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444433333322 234577777777777777777777777777766543
No 289
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.39 E-value=3.6 Score=29.46 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=36.2
Q ss_pred CcHhH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 42 PHVFT-WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 42 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
||..+ |+..|....+.|++++|+.+++|-++.|+.--..+|-.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 45544 789999999999999999999999999987766665443
No 290
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.19 E-value=10 Score=22.64 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=29.8
Q ss_pred HHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
+..+...|+++.|..+.+.+..||...|-.|- -.+.|..+....-+.+|..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 33455566666666666666666666664432 234555555555555555554
No 291
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.14 E-value=18 Score=28.41 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=68.2
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
|-...-+++..++.+-.+.-+..+..+|...| -+...|-.++..|... ..++-..+|+.+.+..+ +......-+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 33344567888888888999999999998865 6677888899999888 66778888888887754 3334444444
Q ss_pred HHHhcCCchhHHHHhcccC
Q 031208 123 LYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~ 141 (164)
.+...++...+..+|.+..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~ 158 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHhchhhHHHHHHHHH
Confidence 4444477788888777654
No 292
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.66 E-value=9.4 Score=25.29 Aligned_cols=51 Identities=16% Similarity=0.006 Sum_probs=39.8
Q ss_pred hccchhhHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 91 ASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
...+.+......+..++ ....|+..+|..++..+...|+.++|.++..++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55565555555555543 3457999999999999999999999999988775
No 293
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=79.32 E-value=14 Score=29.83 Aligned_cols=108 Identities=10% Similarity=0.013 Sum_probs=62.9
Q ss_pred HhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHH
Q 031208 23 CSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 102 (164)
+...|-.+.+.++=.++...+..+.-.+-.-+.+...+..|-++|..|-.. .++.+.....+++++|+.+-
T Consensus 726 ~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred hhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhh
Confidence 333333444444444444444555555555556666777788888777422 34666667777777777776
Q ss_pred HHHHHhCCCCch-----------HHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 103 GLAVKAGFSRDM-----------FVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 103 ~~m~~~g~~~~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+..-+. .||+ .-|.-.=++|.|.|+-.+|.++++++.
T Consensus 797 e~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 797 EKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 654322 2222 223344467777888888888877776
No 294
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=78.40 E-value=26 Score=26.37 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=17.8
Q ss_pred HhcccCCCCcchHHHHHHHHHhcCC
Q 031208 136 MFDKMRVRSVVSWTTMISGLAASGD 160 (164)
Q Consensus 136 ~~~~m~~~~~~~~~~li~~~~~~g~ 160 (164)
+++.+..||+..|+++...++--|-
T Consensus 228 LLNylTaPnVlIwsAv~aS~a~p~~ 252 (391)
T cd07229 228 LLNYLTAPNVLIWSAALASNASSAA 252 (391)
T ss_pred eeecCCCCCchHHHHHHHHcCCccc
Confidence 4555556899999998887765543
No 295
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=78.24 E-value=26 Score=26.14 Aligned_cols=118 Identities=16% Similarity=0.075 Sum_probs=81.9
Q ss_pred HHhccCCcHHHHHHHhccCC--CcH--------------hHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 22 LCSFYGKTDHALLVFSQIRC--PHV--------------FTW--NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~--~~~--------------~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
.+.+.|.++.|..=|+...+ |+. ..| -..+..+...|+...|.+....+.+- .+-+..-|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 56789999999998887752 211 112 22344566788999999999998774 244667777
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.-.++|...|++..|..=+....+..- .+....--+-..+...|+.+.++...++-.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 788999999999988877777665543 333444455566777788877777666554
No 296
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.12 E-value=8.7 Score=27.68 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHH
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (164)
++...+.|..+|.+.+|.++.+..+... +.++..+-.|+..+...|+--.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhh
Confidence 3444567777888888888888777655 5677777788888888877444433
No 297
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.98 E-value=4.8 Score=21.41 Aligned_cols=23 Identities=22% Similarity=-0.006 Sum_probs=10.7
Q ss_pred HHHHHHHhccchhhHHHHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
.+|.++.+.|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555444443
No 298
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.93 E-value=8.4 Score=21.76 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=19.9
Q ss_pred cCChhHHHHHHHHHHHcCCCC-Cc-ccHHHHHHHHHhccchhhHHH
Q 031208 57 DGSSLQALLLYNLMICNGFRP-DK-FTFPFVIKACIASLAIEKGKE 100 (164)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p-~~-~t~~~ll~~~~~~~~~~~a~~ 100 (164)
..+.++|+..+....+.-..| +. .++..++.+++..|+++++.+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555543332222 11 244555555555555554443
No 299
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=77.52 E-value=31 Score=26.67 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=86.5
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC-CcH---------hHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCccc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC-PHV---------FTWNLMIRALTID----GSSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~-~~~---------~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
+..+++...=.|+-+.+.+.+....+ ++. ..|+..+..+... ...+.|.+++..+.+. -|+..-
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34556666667888888888776542 222 3466666666543 4678899999999774 477655
Q ss_pred HHHH-HHHHHhccchhhHHHHHHHHHHh--CC-CCchHHHHHHHHHHHhcCCchhHHHHhcccCCC
Q 031208 82 FPFV-IKACIASLAIEKGKEVHGLAVKA--GF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143 (164)
Q Consensus 82 ~~~l-l~~~~~~~~~~~a~~~~~~m~~~--g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 143 (164)
|... -+.+...|++++|.+.++..... .. +.....+--+.-.+.-..+|++|.+.|..+.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 5333 25567779999999999965531 11 223445556666788899999999999999843
No 300
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.09 E-value=10 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 116 VQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-|..|+..|...|..++|.+++.+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHh
Confidence 35566666666666666666665554
No 301
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=76.89 E-value=16 Score=23.17 Aligned_cols=81 Identities=6% Similarity=-0.136 Sum_probs=55.8
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---cccHHHHHHHHHhccchhhHHHHHHHHHHhC-CCCchHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD---KFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQS 118 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~ 118 (164)
....|+.-.. ..+.|++++|.+.|+.+... .+.+ ...--.|+.++.+.+++++|...++...+.. -.|+ .-|-
T Consensus 10 ~~~ly~~a~~-~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQE-ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYA 86 (142)
T ss_pred HHHHHHHHHH-HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHH
Confidence 3344555443 36789999999999999765 2322 2455678899999999999999999988764 2232 4455
Q ss_pred HHHHHHHh
Q 031208 119 TLMDLYLK 126 (164)
Q Consensus 119 ~ll~~~~~ 126 (164)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 55555443
No 302
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=76.25 E-value=11 Score=21.00 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=23.4
Q ss_pred HHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 031208 22 LCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK 79 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 79 (164)
..++.|+++....+++.-...+. -.+ .+...+..|+. ++++.+.+.|..++.
T Consensus 3 ~A~~~~~~~~~~~ll~~~~~~~~-~~~-~l~~A~~~~~~----~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEKGADINL-GNT-ALHYAAENGNL----EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHTTTHHHHHHHHHTTSTTTS-SSB-HHHHHHHTTTH----HHHHHHHHTTTCTT-
T ss_pred HHHHcCCHHHHHHHHHCcCCCCC-CCC-HHHHHHHcCCH----HHHHHHHHhcccccc
Confidence 34556666666666663333222 111 23233444443 344444455555544
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.56 E-value=5.7 Score=17.24 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=13.1
Q ss_pred HHHHHhccchhhHHHHHHHHHHh
Q 031208 86 IKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
-.++.+.|+.++|.+.++++.+.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34455556666666666665543
No 304
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=75.46 E-value=29 Score=25.34 Aligned_cols=89 Identities=9% Similarity=0.099 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH----------hcCCchh
Q 031208 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL----------KCGDVDG 132 (164)
Q Consensus 63 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~----------~~~~~~~ 132 (164)
-.++++.|+..++.|.-+.|.-+.-.+.+.=.+.+...+|+.+..... -|..|+..|| -.|++..
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 346778888889999999999998889999999999999998875322 2556665554 3588888
Q ss_pred HHHHhcccCCCCcchHHHHHHHHH
Q 031208 133 GRKMFDKMRVRSVVSWTTMISGLA 156 (164)
Q Consensus 133 a~~~~~~m~~~~~~~~~~li~~~~ 156 (164)
..++++.-..-|+...-++.+.+.
T Consensus 337 nmkLLQ~yp~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 337 NMKLLQNYPTTDISKMLAVADSLR 360 (370)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 899988877666665554444443
No 305
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=74.74 E-value=32 Score=25.44 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=48.5
Q ss_pred HHHHHHhccCCcHHHHHHHhccC-------CCcHhHHHH--HHHHHHhcCChhHHHHHHHHHHH-----cCCCCCcc-cH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIR-------CPHVFTWNL--MIRALTIDGSSLQALLLYNLMIC-----NGFRPDKF-TF 82 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~-t~ 82 (164)
.++...-+.++.++|.++.+++. +|+.+.|.. +...+-..|+.+++.+++.+.+. .+++|+.+ .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34444555667888888877775 467666543 34445567888888888888776 67777554 44
Q ss_pred HHHHH-HHHhccchh
Q 031208 83 PFVIK-ACIASLAIE 96 (164)
Q Consensus 83 ~~ll~-~~~~~~~~~ 96 (164)
..+-. .|-+.|++.
T Consensus 160 Y~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHhHH
Confidence 44433 333334443
No 306
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=74.31 E-value=12 Score=20.25 Aligned_cols=49 Identities=12% Similarity=-0.067 Sum_probs=25.9
Q ss_pred CCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 031208 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 76 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 125 (164)
.|....++.++..+++...++++...+++...+|. .+..+|---+..++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34444555666666666666666666666666553 34444444444444
No 307
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=73.81 E-value=14 Score=22.34 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=36.2
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchh
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 132 (164)
..++......+..-.|.++++.+.+.+...+..|.-.-|+.+.+.|-+..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 45677777777777888888888888877777777777777777776553
No 308
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=73.74 E-value=15 Score=21.89 Aligned_cols=43 Identities=14% Similarity=-0.026 Sum_probs=19.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 94 (164)
..+...+..-.|.++++++.+.+..++..|.--.|+.+...|-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334444455555555544444444443344444444443
No 309
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=73.58 E-value=35 Score=25.46 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhcc---CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc----HHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQI---RCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT----FPFV 85 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t----~~~l 85 (164)
...+..--.+|...|++..|..=+... .+.|...+--+-..+-..|+.+.++...++... +.||.-. |-.|
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKL 266 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHH
Confidence 333333344555555555555433322 233444433344444555566666555555544 2344321 1111
Q ss_pred ---------HHHHHhccchhhHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 ---------IKACIASLAIEKGKEVHGLAVKAGFSRD---MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 ---------l~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+......+++.++.+-.+...+..-+.. ...+..+..+|...+++-+|++...++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 0111222344444444444433321111 2234455666677777777776666554
No 310
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=73.20 E-value=23 Score=28.81 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=47.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc--CCCCCcccHHHHHHHHHhccchhhH--HHHHH-HHHHhCCCCchHHHHHHHHH
Q 031208 49 LMIRALTIDGSSLQALLLYNLMICN--GFRPDKFTFPFVIKACIASLAIEKG--KEVHG-LAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a--~~~~~-~m~~~g~~~~~~~~~~ll~~ 123 (164)
+|+.+|..+|++..+.++++..... |-+.=...||.-|+...+.|.++.. ..-.. .++..-+.-|..||..|+++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6788888888888888888777432 2222334667777888888876531 11111 22223355667777777776
Q ss_pred HHh
Q 031208 124 YLK 126 (164)
Q Consensus 124 ~~~ 126 (164)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 543
No 311
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=72.42 E-value=24 Score=23.02 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=37.8
Q ss_pred HHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 70 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
++..|++++..- ..++..+....+.-.|.++++.+.+.+..++..|--.-|+.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 345566655533 3555555555566677777777777776666666666666666666544
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.30 E-value=20 Score=26.59 Aligned_cols=77 Identities=18% Similarity=-0.008 Sum_probs=51.2
Q ss_pred HHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhH
Q 031208 22 LCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 98 (164)
-|.+.|.+++|...|..-. .| |.+++..-..+|.+..++..|..=....... | ..-+++|.+.+....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHHHHH
Confidence 4667899999999998765 45 8888888888898888877665544444321 1 2345677666655555
Q ss_pred HHHHHHHH
Q 031208 99 KEVHGLAV 106 (164)
Q Consensus 99 ~~~~~~m~ 106 (164)
+....+.+
T Consensus 178 Lg~~~EAK 185 (536)
T KOG4648|consen 178 LGNNMEAK 185 (536)
T ss_pred HhhHHHHH
Confidence 55444444
No 313
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=72.10 E-value=31 Score=24.25 Aligned_cols=82 Identities=9% Similarity=-0.018 Sum_probs=56.9
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHh-CCCCchHHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQS 118 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~ 118 (164)
|-...|+..+.. .+.|++++|.+.|+.+.... ..| ...+--.++-++-+.++.++|....++..+. +-.|| .-|-
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 444556666644 67899999999999997542 222 3455666778889999999999999988754 44454 3455
Q ss_pred HHHHHHH
Q 031208 119 TLMDLYL 125 (164)
Q Consensus 119 ~ll~~~~ 125 (164)
..|.+.+
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 5555554
No 314
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=71.89 E-value=38 Score=27.84 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=15.5
Q ss_pred cCCcHHHHHHHhccCCCcHh
Q 031208 26 YGKTDHALLVFSQIRCPHVF 45 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~~~~~ 45 (164)
.|++++|.+++-++..+|..
T Consensus 747 ~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred hcchhHhhhhhhccchhhhh
Confidence 57888999888888766653
No 315
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=71.84 E-value=35 Score=27.87 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=61.0
Q ss_pred HHHHHHhccCCcHHHHHHHhccCC------CcHhHHHHHHHHHHhcCChh--HHHHHHHHH-HHcCCCCCcccHHHHHHH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRC------PHVFTWNLMIRALTIDGSSL--QALLLYNLM-ICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~--~a~~~~~~m-~~~~~~p~~~t~~~ll~~ 88 (164)
+++.+|...|++..+..+++.+-. .-...+|.-|+.+.+.|.++ ++.+-..+. ++.-+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 799999999999999999988752 23467888899999999754 333333333 344466788889888877
Q ss_pred HHhccchhhHHHHHHHHH
Q 031208 89 CIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~ 106 (164)
...--.-..+.-++.+..
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 655444444444444443
No 316
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=71.70 E-value=42 Score=25.53 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=34.5
Q ss_pred hccCCcHHHHHHHhccCC------------------------------------Cc-HhHHHHHHHHHHhcCChhHHHHH
Q 031208 24 SFYGKTDHALLVFSQIRC------------------------------------PH-VFTWNLMIRALTIDGSSLQALLL 66 (164)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~------------------------------------~~-~~~~~~li~~~~~~~~~~~a~~~ 66 (164)
.-.|+.+.|.+-|+.|.. |. ...+...+...+..|+|+.|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred HhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 347888888888888851 10 12356677888888888888888
Q ss_pred HHHHHH
Q 031208 67 YNLMIC 72 (164)
Q Consensus 67 ~~~m~~ 72 (164)
.+.-++
T Consensus 211 vd~~~~ 216 (531)
T COG3898 211 VDAQRA 216 (531)
T ss_pred HHHHHH
Confidence 877644
No 317
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.63 E-value=30 Score=23.81 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=58.8
Q ss_pred HHHHHHHHhc--cCCcHHHHHHHhccCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH---HHHHHHH
Q 031208 16 VRKLLDLCSF--YGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF---PFVIKAC 89 (164)
Q Consensus 16 ~~~li~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~---~~ll~~~ 89 (164)
+...+.++.- .++++.|.+.+..-.. |+.. .-++.++...|+.+.|+.+++.+. |+..+. ..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~-----p~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVG-----PPLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcC-----CCCCCHHHHHHHHHH-
Confidence 4556666664 5667777777654321 2212 247777887888888888887753 333333 223333
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
...+.+.+|+.+.+...... ....+..++..+..
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 66678888887776654321 13456666665553
No 318
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.53 E-value=16 Score=20.74 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=24.9
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQST 119 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 119 (164)
++++.+.+..-.++|.++++.+.++| +.+...-+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 46677777778888999999888888 444443333
No 319
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.49 E-value=39 Score=25.13 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=39.2
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc--cHH--HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF--TFP--FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
|...+.--=.+|.-+|+.+.-...++++.-. -.|+.. +|. ...-++...|-+++|++.-++..+-+ ..|.-...
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~H 213 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASH 213 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHH
Confidence 3444444445555555555555555555321 112221 111 11222234455555555444433222 12223333
Q ss_pred HHHHHHHhcCCchhHHHHhcc
Q 031208 119 TLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~ 139 (164)
++.+..-..|+..++.++..+
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHh
Confidence 444444444555555554443
No 320
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.43 E-value=16 Score=27.27 Aligned_cols=37 Identities=8% Similarity=0.189 Sum_probs=19.6
Q ss_pred hHhhhcCCCCHHH--HHHHHHHHhccCCcHHHHHHHhcc
Q 031208 3 KIIRYGLSNDQLL--VRKLLDLCSFYGKTDHALLVFSQI 39 (164)
Q Consensus 3 ~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~ 39 (164)
.+.+.|..|+... ..+.++..+..|+.+.+.-+++.-
T Consensus 20 ~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 58 (413)
T PHA02875 20 RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG 58 (413)
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 3455566555432 233455555666666666555543
No 321
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=70.52 E-value=36 Score=29.04 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH--HHHhccchhhHHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK--ACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~m~ 106 (164)
|...|..+..+|..+|++..|.++|.+... +.|+. +|..... .-+..|.+.++...++...
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456677788888888888888888877654 34543 3333332 2355566777766666554
No 322
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.93 E-value=31 Score=24.32 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=39.1
Q ss_pred HHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 34 LVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 34 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
.+|+...+|.......++..| ..+++++|.+++.++...|+.|.-. .+.+++.+-..
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~~ 285 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVVKNM 285 (333)
T ss_pred hhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhc
Confidence 344444457777777777664 4567999999999999999888542 35566665444
No 323
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=69.43 E-value=19 Score=20.70 Aligned_cols=42 Identities=29% Similarity=0.184 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 100 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
++|+-....|+..|..+|.++++...-.=-.+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555556666666666666665554444555555555553
No 324
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.09 E-value=58 Score=26.29 Aligned_cols=82 Identities=20% Similarity=0.086 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
+..-|..|=++..+.+++..|.+.|.... -|..|+-.+...|+-+....+=..-++.| ..|..+-++..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~l 733 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYFL 733 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHHH
Confidence 45557777788888888888888877655 47778888888888777666666666665 34666778888
Q ss_pred ccchhhHHHHHHH
Q 031208 92 SLAIEKGKEVHGL 104 (164)
Q Consensus 92 ~~~~~~a~~~~~~ 104 (164)
.|+++++.+++.+
T Consensus 734 ~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 734 SGDYEECLELLIS 746 (794)
T ss_pred cCCHHHHHHHHHh
Confidence 9999988877654
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=68.76 E-value=30 Score=22.66 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=63.7
Q ss_pred cCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh-CCCCchHHH
Q 031208 39 IRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQ 117 (164)
Q Consensus 39 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~ 117 (164)
-..++...+..++..+.+.|++.. +..+.+.++-||.......+-.+.. ....+.++--.|.++ + ..+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~ 92 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAY 92 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhH
Confidence 335777899999999999998654 4677778888887665555433322 334445544444433 3 145
Q ss_pred HHHHHHHHhcCCchhHHHHhcccCC
Q 031208 118 STLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
..+++.+...|++-+|.++.+....
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~ 117 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHK 117 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 6778888899999999999987643
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.45 E-value=50 Score=28.71 Aligned_cols=81 Identities=14% Similarity=-0.039 Sum_probs=37.9
Q ss_pred HHHHHHHHhccC--CcHHHHHHHhccC---------CCcHhHHHHHH----HHHHhcCChhHHHHHHHHHHHcCCCCCcc
Q 031208 16 VRKLLDLCSFYG--KTDHALLVFSQIR---------CPHVFTWNLMI----RALTIDGSSLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 16 ~~~li~~~~~~~--~~~~a~~~~~~~~---------~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 80 (164)
|..-+.-.+.+| -++++.++.++-. .|+...+..+. ..+.....+++|.-+|...-+.
T Consensus 896 y~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl------- 968 (1265)
T KOG1920|consen 896 YEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL------- 968 (1265)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------
Confidence 344444444444 4555555555433 35544433333 3333445555555555544211
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHH
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLA 105 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m 105 (164)
.-.+.+|-..|++++|..+..++
T Consensus 969 --ekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 969 --EKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred --HHHHHHHHHhccHHHHHHHHHhh
Confidence 23445555555555555554443
No 327
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=68.04 E-value=8.4 Score=22.26 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=13.4
Q ss_pred chhHHHHhcccCCCCcchHHHHHHHHHh
Q 031208 130 VDGGRKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
.+++.++++.++.++...|.....++-.
T Consensus 50 ~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 50 FSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 3444444444444444444544444443
No 328
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=67.43 E-value=27 Score=21.66 Aligned_cols=110 Identities=11% Similarity=0.130 Sum_probs=64.9
Q ss_pred cHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH----HHHH-------hccchhh
Q 031208 29 TDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI----KACI-------ASLAIEK 97 (164)
Q Consensus 29 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll----~~~~-------~~~~~~~ 97 (164)
+.-|.+++......+ -+...++.+....-.-.++++..++....-.|.... ...+ +.|- +......
T Consensus 5 p~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl-~~yI~~cI~~ce~~kd~~~q~R~VRl 81 (126)
T PF10155_consen 5 PNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFL-HMYISNCIKSCESIKDKYMQNRLVRL 81 (126)
T ss_pred HHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHH-HHHHHHHHHHHHhhcccccccchhhh
Confidence 344555555443222 255556666777777777777777766654444422 2222 2222 1223344
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 98 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.-.+++.+.+.++......+.-+=..|.+..+..+|..+|+-+.
T Consensus 82 vcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 82 VCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 44566777777876666666666677777888889988887543
No 329
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.91 E-value=51 Score=24.60 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh---CCCCchHHHHHHHHHHHhcCCchhH
Q 031208 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA---GFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
.|+..+|...++++.+. .+.|...+...=++|.-.|+...-...++.+.-. +++-.+++-..+--++-.+|.+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45666666677777654 4667777777788888888888877777776533 2222334444444555678999999
Q ss_pred HHHhcccC
Q 031208 134 RKMFDKMR 141 (164)
Q Consensus 134 ~~~~~~m~ 141 (164)
.+.-++-.
T Consensus 195 Ek~A~ral 202 (491)
T KOG2610|consen 195 EKQADRAL 202 (491)
T ss_pred HHHHHhhc
Confidence 88887655
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.36 E-value=11 Score=16.58 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
|..+=..|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555543
No 331
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.34 E-value=8.8 Score=22.82 Aligned_cols=64 Identities=6% Similarity=-0.048 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc--chhhHHHHHHHHHHhCCCCc
Q 031208 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL--AIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~ 113 (164)
..++..|...++.++|..-+.++......+ .....++..+...+ .-+....++..+.+.+..+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~--~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHH--EVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHH--HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 456667888899999998888864321111 22334444444442 23345566666666665443
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.11 E-value=47 Score=23.95 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=76.2
Q ss_pred hcCCCCHHHHHHHHHHH-hccCCcHHHHHHHhccCC--C--c---HhHHHHHHHHHHhcCChhHHHHHHHHHHH---cCC
Q 031208 7 YGLSNDQLLVRKLLDLC-SFYGKTDHALLVFSQIRC--P--H---VFTWNLMIRALTIDGSSLQALLLYNLMIC---NGF 75 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~--~--~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~ 75 (164)
++-+||+..=|..-..= .+...+++|..-|+...+ + . ....-.+|..+.+.+++++.++-|.+|.. ..+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 44556655544433221 134466777776665542 1 1 22344566667777777777777777642 222
Q ss_pred C--CCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC-CCch----HHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 76 R--PDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDM----FVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 76 ~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+ -+.-+.|++++..+.+.+.+....+++.-.+.=- ..+. .|-+.|-..|...+++.+..++++++.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 2 2345667777777766666666666666555421 1122 244556666666777777777777764
No 333
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=65.94 E-value=25 Score=27.12 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=39.4
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhc
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFS--RDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAAS 158 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 158 (164)
.|+.-|...|++.+|.+++.++ |++ ..+.++-+++-+.-+.|+-+..+.++++.-.....|-+.|-.||.|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhh
Confidence 3445555556666665555543 221 23556666666666666655555555555444555555555555543
No 334
>PRK09462 fur ferric uptake regulator; Provisional
Probab=65.49 E-value=32 Score=21.77 Aligned_cols=62 Identities=6% Similarity=0.024 Sum_probs=42.6
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhc-cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 69 LMICNGFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 69 ~m~~~~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-|+.+...|-+.
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3556677766543 4566666654 457788888888888876667777777777777777654
No 335
>PRK14700 recombination factor protein RarA; Provisional
Probab=65.02 E-value=51 Score=23.91 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=43.5
Q ss_pred HHHHHHHhc---CChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc-----hhhHHHHHHHHHHhCCC
Q 031208 49 LMIRALTID---GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-----IEKGKEVHGLAVKAGFS 111 (164)
Q Consensus 49 ~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~ 111 (164)
-+|+++.|+ +++|.|+-.+.+|.+.|-.|.-..-..++-++-..|. ...|...++....-|++
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 346666554 6788899999999888888877777667766665553 33455566666666753
No 336
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.44 E-value=48 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCchhHHHHhcc
Q 031208 117 QSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 117 ~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
|-..|-.|.-..++-.|.+.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcc
Confidence 33444445555555556666655
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.42 E-value=46 Score=23.19 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCcccHHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICN--GFRPDKFTFPFVIKA 88 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~ 88 (164)
+.+..++.+.+.+++++|......-. +| |...-..++..++-.|+|+.|..-++-.-+- ...+-..+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555677778888888888776543 34 5566778999999999999998877766432 233444556555544
No 338
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=64.29 E-value=30 Score=21.09 Aligned_cols=38 Identities=21% Similarity=0.007 Sum_probs=26.1
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
++++.+.+....++|.++++.|.++| +.+...-+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35666777778888888888888888 455444444433
No 339
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=64.09 E-value=6.3 Score=30.24 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=59.3
Q ss_pred cHHHHHHHhccC--CCcH----------hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHH-HHHHHHhccch
Q 031208 29 TDHALLVFSQIR--CPHV----------FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF-VIKACIASLAI 95 (164)
Q Consensus 29 ~~~a~~~~~~~~--~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~ 95 (164)
-+.-.++|+..+ .|.+ ..|++|..++.++-.+.+ ..+-.+|...+-..+.++... =...=....+.
T Consensus 463 ~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknk 541 (650)
T KOG4334|consen 463 QQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNK 541 (650)
T ss_pred chhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeech
Confidence 344556777665 2333 247888888888766642 223344544443444432100 00111223466
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 031208 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 127 (164)
.++.++-.+-.-.-+.|...+|.+|+..|.+.
T Consensus 542 r~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 542 RQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred hHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 77888888777777899999999999999876
No 340
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.08 E-value=31 Score=23.72 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHhccCCcHHHHHHHhccCCCc--HhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRCPH--VFTWNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
++-..++-+|..++|..+++.++--+ ...-.-|+..|+++.+.++++++-++..
T Consensus 152 AlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~~L 207 (263)
T KOG3154|consen 152 ALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNEFL 207 (263)
T ss_pred HHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 45556667899999999999888432 2344568889999998888888766653
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=64.00 E-value=25 Score=27.63 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=13.0
Q ss_pred HhcCCchhHHHHhcccCCCCc
Q 031208 125 LKCGDVDGGRKMFDKMRVRSV 145 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~ 145 (164)
.|.+++++|..+--++..+|.
T Consensus 505 LR~~rfekAFlLAvdi~~~DL 525 (545)
T PF11768_consen 505 LRYQRFEKAFLLAVDIGDRDL 525 (545)
T ss_pred HHhhHHHHHHHHHHhccchHH
Confidence 455667777666666665543
No 342
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=63.57 E-value=29 Score=20.60 Aligned_cols=62 Identities=10% Similarity=-0.027 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc--chhhHHHHHHHHHHhCC
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL--AIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~ 110 (164)
...++..|...+++++|..-+.++......+ .....++..+...+ .-+....++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~--~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQHH--EVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 4456778888999999999998885432222 22334455555443 23334555666655553
No 343
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.17 E-value=66 Score=25.26 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=42.0
Q ss_pred hhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC-----------------CCcHhHHHHHHHHHHhcCChhHHHHHH
Q 031208 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-----------------CPHVFTWNLMIRALTIDGSSLQALLLY 67 (164)
Q Consensus 5 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 67 (164)
.+.|++.+......++... .|++..|..++++.. ..+....-.++.+.. .++.+.++.++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3456666666555554443 477777777775432 122223333444433 47788888888
Q ss_pred HHHHHcCCCCC
Q 031208 68 NLMICNGFRPD 78 (164)
Q Consensus 68 ~~m~~~~~~p~ 78 (164)
++|...|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 88888877764
No 344
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=63.04 E-value=28 Score=20.75 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
++..+...+..-.|.++++++.+.+..++..|.-..|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444444444556666666665555555555555555555555443
No 345
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=62.45 E-value=53 Score=23.27 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHHHHHhccchh---hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 82 FPFVIKACIASLAIE---KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
...+..++...+..+ .|..+++.+... ..-.+.++-.-++.+.+.++.+.+.+.+.+|.
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 344445554444433 233333444222 11223344344444444555555555555554
No 346
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=62.18 E-value=69 Score=24.47 Aligned_cols=144 Identities=17% Similarity=0.124 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC-----CCcHh--HHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCccc-
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR-----CPHVF--TWNLMIRALTID---GSSLQALLLYNLMICNGFRPDKFT- 81 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~--~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~t- 81 (164)
.-.+...+...|..|+++.|.++.+.-+ ++++. .-..|+.+-+.. .+...|.+.-.+- ..+.|+..-
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--NKLAPDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcCCccchH
Confidence 4457788999999999999999999765 35543 334455544332 3455555444333 335666542
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH----HHHhcccCCCCcchHHHHHHHHHh
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG----RKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
-..-.+++.+.|+..++-.+++.+=+.. |.+.++.. -.+.+.|+.... .+-+..|+..|..+.-.+.++-..
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 2344688999999999999999988775 44444433 334566664322 133456665666666666666666
Q ss_pred cCCCC
Q 031208 158 SGDLD 162 (164)
Q Consensus 158 ~g~~~ 162 (164)
.|++.
T Consensus 342 a~e~~ 346 (531)
T COG3898 342 AGEFS 346 (531)
T ss_pred ccchH
Confidence 66553
No 347
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=61.84 E-value=46 Score=22.92 Aligned_cols=78 Identities=10% Similarity=0.151 Sum_probs=47.1
Q ss_pred cHHHHHHHhccCC-----------CcHhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-CcccHHHHHH
Q 031208 29 TDHALLVFSQIRC-----------PHVFTWNLMIRALTIDG---------SSLQALLLYNLMICNGFRP-DKFTFPFVIK 87 (164)
Q Consensus 29 ~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~ 87 (164)
.+.|..++..|-- ....-|-.+-.+|++.| +.+...++++.....|++. =++.|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 4667777777652 23445677777777776 3455555666666666543 3355666666
Q ss_pred HHHhccchhhHHHHHHHHH
Q 031208 88 ACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~ 106 (164)
--.-.-+.++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555556666666666553
No 348
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.38 E-value=71 Score=24.39 Aligned_cols=60 Identities=18% Similarity=0.038 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC------PHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
..+..+-+-|..+|+++.|.+.+.+.+. .-...|-.+|..-.-.|+|.++.....+-.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4566778889999999999999998652 33456777777778888998888888877654
No 349
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=60.75 E-value=48 Score=22.18 Aligned_cols=56 Identities=14% Similarity=0.031 Sum_probs=41.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-C-CcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFR-P-DKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
.+...|++++|...|+++...--. | -....-.+..++.+.|+++.|...+++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457789999999999999765211 1 1134456788999999999999999998765
No 350
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=60.33 E-value=84 Score=24.89 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 76 (164)
...+..++..+-... .+.-.++++++.. . ...+..++++.+..|-.....-+.+.+....+.
T Consensus 310 ~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 310 AAKFLRLVRLLRTLS-EEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 334444444333222 2333344444333 2 566777777777777554444444444444443
No 351
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.15 E-value=54 Score=22.58 Aligned_cols=102 Identities=10% Similarity=-0.080 Sum_probs=63.4
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 47 WNLMIRAL--TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 47 ~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
|...+.++ -..+++++|.+.+.+- .+.|+-. .-++.++...|+.+.|..+++.+.-..- +...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-
Confidence 55667776 3456777777776322 2222222 3588888889999999998887532211 12222333333
Q ss_pred HhcCCchhHHHHhcccCCCC-cchHHHHHHHHH
Q 031208 125 LKCGDVDGGRKMFDKMRVRS-VVSWTTMISGLA 156 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~-~~~~~~li~~~~ 156 (164)
..++.+.+|..+-+...++. ...+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 66788999988888777542 456677776666
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.96 E-value=86 Score=24.86 Aligned_cols=93 Identities=4% Similarity=-0.001 Sum_probs=55.5
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC-----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC-----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
..-++.-|.+.+++++|..++..|.- .--...+.+.+.+.+..-.++....++.....=..|....-..+..-|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 34577789999999999999998872 1223445566666666656666666666665544443332222233332
Q ss_pred hccchhhHHHHHHHHHHhC
Q 031208 91 ASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g 109 (164)
. .=.+.|.++|..+.+.+
T Consensus 491 d-~V~~~aRRfFhhLLR~~ 508 (545)
T PF11768_consen 491 D-PVSDLARRFFHHLLRYQ 508 (545)
T ss_pred H-HHHHHHHHHHHHHHHhh
Confidence 2 23345666666666553
No 353
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=59.20 E-value=26 Score=19.18 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=17.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 57 DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
.++.+.+.+++++....|..|.......+..+..+.|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444444444444433
No 354
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=59.14 E-value=41 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 111 SRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 111 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
.+.-.+-|.....+.++|.+|.|..++++-
T Consensus 178 asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 178 ASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 344556677777778888888888877754
No 355
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=59.04 E-value=44 Score=21.25 Aligned_cols=88 Identities=20% Similarity=0.114 Sum_probs=63.0
Q ss_pred HHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCc--ccHHHHHHHHHhccch
Q 031208 22 LCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDK--FTFPFVIKACIASLAI 95 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~--~t~~~ll~~~~~~~~~ 95 (164)
+.+..|+++.|.+.|.+... .+...||.--.++.-.|+.++|++=+++..+. |-.... ..|.---..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 56679999999999998652 46678999999999999999999998887553 322111 2333333445666777
Q ss_pred hhHHHHHHHHHHhC
Q 031208 96 EKGKEVHGLAVKAG 109 (164)
Q Consensus 96 ~~a~~~~~~m~~~g 109 (164)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88877777665554
No 356
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=58.85 E-value=15 Score=15.91 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=10.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 031208 50 MIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~ 71 (164)
+=..+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455555555555555543
No 357
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.66 E-value=84 Score=24.68 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=42.6
Q ss_pred hhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC----------------CCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 031208 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR----------------CPHVFTWNLMIRALTIDGSSLQALLLYNL 69 (164)
Q Consensus 6 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 69 (164)
+.|++.+......++... .|++..+...++.+. .+.....-.++.++ ..++.+.|+..+++
T Consensus 190 ~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~~ 266 (504)
T PRK14963 190 AEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAAQ 266 (504)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 457766666665555443 367777766665532 12222233445554 55788888888888
Q ss_pred HHHcCCCCC
Q 031208 70 MICNGFRPD 78 (164)
Q Consensus 70 m~~~~~~p~ 78 (164)
+...|..|.
T Consensus 267 Ll~~G~~~~ 275 (504)
T PRK14963 267 LYRDGFAAR 275 (504)
T ss_pred HHHcCCCHH
Confidence 888886654
No 358
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=58.25 E-value=74 Score=23.57 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=44.1
Q ss_pred HHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 21 DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQ-ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
+.|++.++-+.+..+-+.+..-.......+..++-...-.+. +..+++..... ||......++++.+.........
T Consensus 174 D~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~ 250 (340)
T PF12069_consen 174 DICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVA 250 (340)
T ss_pred HHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHH
Confidence 344444444444444444443222233334433333333333 33344444433 78888888888888877766666
Q ss_pred HHHHHHHHhC
Q 031208 100 EVHGLAVKAG 109 (164)
Q Consensus 100 ~~~~~m~~~g 109 (164)
..++.+....
T Consensus 251 ~~i~~~L~~~ 260 (340)
T PF12069_consen 251 ILIDALLQSP 260 (340)
T ss_pred HHHHHHhcCc
Confidence 6566665543
No 359
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.23 E-value=61 Score=27.11 Aligned_cols=71 Identities=7% Similarity=0.038 Sum_probs=40.5
Q ss_pred HHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHH----HHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYN----LMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
++..+++..+.+.+..+.+...+-+...|-.++.-+++.+..+...+... .......-|.. .++..+++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl----~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL----HVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH----HHHHHHhcCC
Confidence 45555556666666666666655567778888888877775544444333 33334444433 2444554443
No 360
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=56.52 E-value=46 Score=20.71 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=24.9
Q ss_pred HHHHHHhccCCcHHHHHHHhccCC-CcH-hHHHHHHHHHHhcCChhHHHHHHHH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRC-PHV-FTWNLMIRALTIDGSSLQALLLYNL 69 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 69 (164)
++..++.-.|..+.|.++++.++- ++- ..-.-++..|+++.+.++..++-++
T Consensus 71 AlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 71 ALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344444555555555555555552 111 2223355555555555555444333
No 361
>PLN03025 replication factor C subunit; Provisional
Probab=56.29 E-value=75 Score=23.02 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=9.9
Q ss_pred cchhhHHHHHHHHHHhCCCCc
Q 031208 93 LAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~ 113 (164)
++++.|...+.++...|..|.
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~ 258 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPT 258 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344445554544444444443
No 362
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.15 E-value=38 Score=19.58 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=41.3
Q ss_pred HHHHHhccCCCcHhHHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHH
Q 031208 32 ALLVFSQIRCPHVFTWNLMIRAL---TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100 (164)
Q Consensus 32 a~~~~~~~~~~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 100 (164)
+.++++.+.+.+..|-+..=..- ...|+.+.|..++..+. .| |+ -|..++.++...|....|.+
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhhc
Confidence 45566666655544443332222 35688889999988887 43 44 46788888888887766654
No 363
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.99 E-value=54 Score=21.34 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=48.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH-HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 031208 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV-IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
+..-.+.++.+++..++..+.. +.|.......+ -..+...|++.+|..+++++.... |.......|+..|..
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 3344567799999999999976 45665433322 344578899999999999986653 444444555554443
No 364
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.57 E-value=43 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhcC--ChhHHHHHHHHHHHc
Q 031208 45 FTWNLMIRALTIDG--SSLQALLLYNLMICN 73 (164)
Q Consensus 45 ~~~~~li~~~~~~~--~~~~a~~~~~~m~~~ 73 (164)
.-...+|.+|.+.+ +.++|+.+..++++.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34567788888888 788888888888765
No 365
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=55.54 E-value=41 Score=19.85 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCcH--hHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCC
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHV--FTWNLMIRALTIDG--SSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p 77 (164)
...++..|...|+.++|..-+.++..|+. .....++......+ .-+.+..++..+...+..+
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 34566777888999999999999876622 23334444444432 2344555666666555433
No 366
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.26 E-value=1.2e+02 Score=25.71 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCcccHHHHHHHHHhccch--hhHHHHHHHHHHhCCCCchHHHH--
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNG---FRPDKFTFPFVIKACIASLAI--EKGKEVHGLAVKAGFSRDMFVQS-- 118 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~-- 118 (164)
-|..|+.-|...|..++|++++.+....- -..-..-+.-++..+-+.+.. +..+++-+......-.-...++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48888999999999999999999986521 111122334466666666655 55666555554432111111111
Q ss_pred ----------HHHHHHHhcCCchhHHHHhcccC----CCCcchHHHHHHHHHh
Q 031208 119 ----------TLMDLYLKCGDVDGGRKMFDKMR----VRSVVSWTTMISGLAA 157 (164)
Q Consensus 119 ----------~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~ 157 (164)
-.+-.|.+....+.+..+++.+. ..+..-.+.++.-|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 12334566666677777777665 2244555666665553
No 367
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.18 E-value=41 Score=25.69 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=68.6
Q ss_pred cCCcHHHHHHHhccCC--CcHh-------------HHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCcccHHHHHH
Q 031208 26 YGKTDHALLVFSQIRC--PHVF-------------TWNLMIRALTIDGSSLQALLLYNLMIC---NGFRPDKFTFPFVIK 87 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~--~~~~-------------~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~t~~~ll~ 87 (164)
.++.+.|..-|++-.. |+-. .|.--=+-..+.|++..|.+.|.+-.. .++.|+...|.-...
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 5567778888877653 3221 122223335678999999999999865 345556666777777
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHH-HH--HHHHhcCCchhHHHHhcccC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQST-LM--DLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-ll--~~~~~~~~~~~a~~~~~~m~ 141 (164)
...+.|+.++|..--.+..+ .|..-.-+ +. .++.-.++|+.|.+-|+...
T Consensus 296 v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred hhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999988877666553 33222222 22 23334566666666666543
No 368
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=55.04 E-value=65 Score=21.93 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=12.3
Q ss_pred HHHHhccCCcHHHHHHHhccC
Q 031208 20 LDLCSFYGKTDHALLVFSQIR 40 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~ 40 (164)
+..|-+.||+...-.+|-..+
T Consensus 58 ie~Ckek~DW~klg~ly~nv~ 78 (233)
T PF14669_consen 58 IEHCKEKGDWTKLGNLYINVK 78 (233)
T ss_pred HHHHhhhccHHHHhhHHhhHH
Confidence 445556677666666655443
No 369
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=54.54 E-value=1.4e+02 Score=26.19 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHH--Hc---CCCCCcccHHHHH----HHHHhccchhhHHHHHHHHHHhCCCCchH
Q 031208 47 WNLMIRALTIDG--SSLQALLLYNLMI--CN---GFRPDKFTFPFVI----KACIASLAIEKGKEVHGLAVKAGFSRDMF 115 (164)
Q Consensus 47 ~~~li~~~~~~~--~~~~a~~~~~~m~--~~---~~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 115 (164)
|...+..+..+| -++++..+.++=. .. =..|+...+..+. +.+.....+++|.-.|+..-+.
T Consensus 896 y~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl------- 968 (1265)
T KOG1920|consen 896 YEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL------- 968 (1265)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------
Confidence 555555555555 3444444433311 00 1345555544444 3344445666666555543211
Q ss_pred HHHHHHHHHHhcCCchhHHHHhcccCCC-Ccch--HHHHHHHHHhcCCCC
Q 031208 116 VQSTLMDLYLKCGDVDGGRKMFDKMRVR-SVVS--WTTMISGLAASGDLD 162 (164)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~--~~~li~~~~~~g~~~ 162 (164)
.-.+.+|-.+|+|.+|+.+-.++..+ |... =..|+.-+...|+.-
T Consensus 969 --ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 969 --EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred --HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccch
Confidence 34567777777888777777777644 2221 144555555555543
No 370
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.17 E-value=1e+02 Score=23.98 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=54.1
Q ss_pred hcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC-----------------CCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 031208 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-----------------CPHVFTWNLMIRALTIDGSSLQALLLYNL 69 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 69 (164)
.|+..+......++... .|+...+...++.+. .........++.+ .+.++++.|+.++.+
T Consensus 192 egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s-i~~~d~~~Al~~l~~ 268 (472)
T PRK14962 192 EGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA-IFNGDVKRVFTVLDD 268 (472)
T ss_pred cCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 35555555555554432 356655655555432 0111222333333 455788888888888
Q ss_pred HHHcCCCCCcccHHHHHHHHHhccchh------hHHHHHHHHHHhCCCCc
Q 031208 70 MICNGFRPDKFTFPFVIKACIASLAIE------KGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 70 m~~~~~~p~~~t~~~ll~~~~~~~~~~------~a~~~~~~m~~~g~~~~ 113 (164)
|...|..|....-..+..++-..|..+ .+..+++...+-|++..
T Consensus 269 ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~ 318 (472)
T PRK14962 269 VYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEE 318 (472)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcch
Confidence 888887776654444443333333222 33444445555565443
No 371
>PRK10292 hypothetical protein; Provisional
Probab=53.20 E-value=35 Score=18.34 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHcCCCCCcccHHHHHHHHHhccchhh
Q 031208 70 MICNGFRPDKFTFPFVIKACIASLAIEK 97 (164)
Q Consensus 70 m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 97 (164)
|...|.+|+......+|+.-..+++...
T Consensus 25 m~~lG~e~k~i~Ia~vlrTa~a~~r~~r 52 (69)
T PRK10292 25 MRDLGQEPKHIVIAGVLRTALANKRIQR 52 (69)
T ss_pred HHHcCCCcchhhHHHHHHHHHHhccccc
Confidence 3446778888777777766666555443
No 372
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=52.66 E-value=41 Score=26.67 Aligned_cols=75 Identities=4% Similarity=-0.120 Sum_probs=33.2
Q ss_pred HHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 32 ALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 32 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
...++.+.+-.+...-.-++..|.+.|..+.+.++.+.+-..-+ ...-|..-+.-+.+.++......+...+.+.
T Consensus 393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33344444434555566677888888888888888887744322 2335667777777887777666666555543
No 373
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=52.61 E-value=44 Score=19.28 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 65 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
++|+--...|+..|...|.+++.-....-..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7777778888888888888888877777777777777777753
No 374
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=52.06 E-value=35 Score=19.55 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=10.0
Q ss_pred hccchhhHHHHHHHHHHhC
Q 031208 91 ASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g 109 (164)
+....++|.++++.+...|
T Consensus 40 ~~t~~~qa~~Lld~L~trG 58 (86)
T cd08323 40 KATQKEKAVMLINMILTKD 58 (86)
T ss_pred CCChHHHHHHHHHHHHhcC
Confidence 3344555555555555544
No 375
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=50.85 E-value=1e+02 Score=22.87 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 96 EKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
+..-..++++.+.|+.++...-+.+..
T Consensus 323 ~~~Ysa~R~~k~~g~~~~~~~v~~lae 349 (354)
T TIGR01914 323 EAFYTALRELKKSGVRYDPEQVDALAE 349 (354)
T ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 333344444444444444444444433
No 376
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=50.73 E-value=98 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=13.0
Q ss_pred HHHHHHHhccchhhHHHHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
.+++.|.+.|.+++|.++....+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHH
Confidence 45555666666666665555444
No 377
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=50.72 E-value=1.3e+02 Score=24.95 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=9.0
Q ss_pred CChhHHHHHHHHHHHcCC
Q 031208 58 GSSLQALLLYNLMICNGF 75 (164)
Q Consensus 58 ~~~~~a~~~~~~m~~~~~ 75 (164)
++...++.+++++...|+
T Consensus 259 ~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 259 QDGAALLAKAQEMAACAV 276 (709)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 445555555555554443
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.71 E-value=55 Score=19.86 Aligned_cols=90 Identities=9% Similarity=0.015 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHh
Q 031208 58 GSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 58 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
...++|-.+.+-+.+.+- -.+..--+-+..+...|++.+| +..-. ..-.||...|-+|- -.|.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 356778888777776653 2222223334555666777777 11111 12246655555443 35777777777777
Q ss_pred cccCCCCcchHHHHHHH
Q 031208 138 DKMRVRSVVSWTTMISG 154 (164)
Q Consensus 138 ~~m~~~~~~~~~~li~~ 154 (164)
.++...+....-....+
T Consensus 93 ~rla~~g~~~~q~Fa~~ 109 (116)
T PF09477_consen 93 TRLASSGSPELQAFAAG 109 (116)
T ss_dssp HHHCT-SSHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 77765544433333333
No 379
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.35 E-value=1.2e+02 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=12.0
Q ss_pred CChhHHHHHHHHHHHcCCCCC
Q 031208 58 GSSLQALLLYNLMICNGFRPD 78 (164)
Q Consensus 58 ~~~~~a~~~~~~m~~~~~~p~ 78 (164)
++...++.+++++...|..|.
T Consensus 264 ~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 556666666666655554443
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.93 E-value=2.4e+02 Score=27.04 Aligned_cols=139 Identities=9% Similarity=-0.059 Sum_probs=0.0
Q ss_pred HHHHHHhccCCcHHHHHHHhc----cC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 18 KLLDLCSFYGKTDHALLVFSQ----IR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~----~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
.+-.+--+++.+..|.-.+++ .+ .....-|-.+...|+..+++|.+..+...-.... +...-|--...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~------sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP------SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc------cHHHHHHHHHh
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHH-HHHHHhcCCCCC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTM-ISGLAASGDLDA 163 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~l-i~~~~~~g~~~~ 163 (164)
.|++..|...++.+.+.+ ++....++-++..-...+.+.......+... .+....|+++ +.+=-+.+++|.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhh
No 381
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.92 E-value=60 Score=20.01 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHHHH
Q 031208 62 QALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEVHG 103 (164)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~ 103 (164)
++.++|..|...|+.... .-|......+...|++.+|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555666666555555433 244444555555566666655554
No 382
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=49.86 E-value=1.2e+02 Score=23.64 Aligned_cols=88 Identities=9% Similarity=-0.040 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHH------HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 60 SLQALLLYNLMICNGFRPDKFTFPFVIK------ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
+..-+.+-+-+...|++|-.+.=.-+.+ .+...|++.++.-.-..+.+ +.|++.+|..+--+.....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444567788886544333222 23556777777666555543 579999999888888899999999
Q ss_pred HHHhcccCCCCcchHHH
Q 031208 134 RKMFDKMRVRSVVSWTT 150 (164)
Q Consensus 134 ~~~~~~m~~~~~~~~~~ 150 (164)
..+|+.++. |..+|++
T Consensus 515 ~~~l~~LP~-n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQKLPP-NERMRDS 530 (549)
T ss_pred HHHHHhCCC-chhhHHH
Confidence 999999984 4444444
No 383
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=49.21 E-value=63 Score=20.56 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=13.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcc
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 80 (164)
..+...+....+.++++.+.+.|+..+..
T Consensus 8 ~~Li~~~~i~tqeeL~~~L~~~G~~vsqa 36 (146)
T TIGR01529 8 KEIITEEKISTQEELVALLKAEGIEVTQA 36 (146)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCcCHH
Confidence 33344444444555555554444444433
No 384
>PRK02287 hypothetical protein; Provisional
Probab=48.77 E-value=76 Score=20.93 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=26.9
Q ss_pred HHHHHHHhccCCcHHHHHHHhccCCC-c-HhHHHHHHHHHHhcCChhHHHHHHHHH
Q 031208 17 RKLLDLCSFYGKTDHALLVFSQIRCP-H-VFTWNLMIRALTIDGSSLQALLLYNLM 70 (164)
Q Consensus 17 ~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m 70 (164)
.++..++.-.|..+.|..+++.+.-. + ...-.-++..|+++.+-++..++-++.
T Consensus 111 EAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~ 166 (171)
T PRK02287 111 EALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEY 166 (171)
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34444555555556666665555521 1 122234555555555555555554443
No 385
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.76 E-value=1.2e+02 Score=23.04 Aligned_cols=62 Identities=19% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHh---cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc-----hhhHHHHHHHHHHhCC
Q 031208 49 LMIRALTI---DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-----IEKGKEVHGLAVKAGF 110 (164)
Q Consensus 49 ~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~ 110 (164)
.++.++.+ .++++.|+..+..|.+.|..|....-..++-++-..|. ...|...++....-|+
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 34444444 36677777777777777766665444444444333331 2234444444555554
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=47.92 E-value=21 Score=14.23 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 031208 48 NLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
..+-..+...++++.|...|++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444455555555555555443
No 387
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=47.65 E-value=68 Score=20.46 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
++.-+-..|-+.+...++++|.+.|+..+...|+..+.-
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 334445557788888999999999998888888877653
No 388
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=47.45 E-value=37 Score=26.03 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+++.++++..+.||.+.+.-+...|++.=-+|.|.++++-.-
T Consensus 459 p~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~ 501 (586)
T KOG2223|consen 459 PKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYC 501 (586)
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheee
Confidence 3566666677778888888888888887777777777766543
No 389
>PHA03100 ankyrin repeat protein; Provisional
Probab=47.40 E-value=80 Score=24.10 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=60.0
Q ss_pred hHhhhcCCCCHHHH--HHHHHH-----HhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHH-hcCChhHHHHHHHHHH
Q 031208 3 KIIRYGLSNDQLLV--RKLLDL-----CSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALT-IDGSSLQALLLYNLMI 71 (164)
Q Consensus 3 ~m~~~g~~~~~~~~--~~li~~-----~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~ 71 (164)
.+.+.|..|+.... .+.+.. .+..|..+.+.-+++.-.. +|..-.+.+..+.. ..|+.+ +++.+.
T Consensus 53 ~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~----iv~~Ll 128 (480)
T PHA03100 53 ILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYS----IVEYLL 128 (480)
T ss_pred HHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHH----HHHHHH
Confidence 34555655543221 223444 5555666665555554332 22222334443332 334333 334444
Q ss_pred HcCCCCCccc--HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhccc
Q 031208 72 CNGFRPDKFT--FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 72 ~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
+.|..++... -...+...+..|. .-.++++.+.+.|..++... -...+...++.|+.+-+..+++.-
T Consensus 129 ~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 129 DNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 5555543321 1234555555551 12234455555665543221 123455566666766666666543
No 390
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=47.08 E-value=1.9e+02 Score=25.02 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=57.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 128 (164)
-....+.++.++|+.|.+.|+.+.. ..|...-..+.+.+.+.+|..+++.-.++.-.|-...-..+-....+.+
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 3566789999999999999988854 5677777888888899999999999888877787665555444444433
No 391
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=46.96 E-value=38 Score=19.93 Aligned_cols=56 Identities=11% Similarity=-0.049 Sum_probs=25.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc
Q 031208 56 IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 113 (164)
+...++.|..+|..+.+.|..-.. .+..+..-+...++.+.- ..+..=++.-+.|+
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll~e~-~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~ 91 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRCDET-NFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPD 91 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCCccc-hHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCc
Confidence 334555666666666555532222 333444444444444443 33333333334443
No 392
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.58 E-value=49 Score=19.91 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 49 LMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
.++..+......-.|.++++.+.+.+...+..|.=-.|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 455555666666777777777777665555554444455555544
No 393
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=46.38 E-value=68 Score=19.64 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHH-HHHHhCCCCchHHHHHHH-HHHHh
Q 031208 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG-LAVKAGFSRDMFVQSTLM-DLYLK 126 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~m~~~g~~~~~~~~~~ll-~~~~~ 126 (164)
.++...+..+-++.|-+|..++++++...+... ++++++ +|.+.+-.-|...||.++ ....+
T Consensus 6 ~e~I~~iVe~RrqEGA~~~Dvs~SSv~sMLLEL-----GLRVYeaQ~erkes~Fnq~eFnK~lLE~v~k 69 (118)
T PRK13713 6 YEKINAIVEERRQEGAREKDVSFSSVASMLLEL-----GLRVYEAQMERKESGFNQTEFNKLLLECVVK 69 (118)
T ss_pred HHHHHHHHHHHHHcCCCccCccHHHHHHHHHHH-----hHHHHHHHHHhhcCcccHHHHHHHHHHHHHH
Confidence 455666777778899999999999999888654 567776 444444456777788654 44443
No 394
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=46.23 E-value=30 Score=19.76 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=37.8
Q ss_pred cCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 8 GLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 8 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
.+.|+...||.+++..+..+...-|..++.+...+ +......++ ...+..+.++...+.
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~ll-----e~~PGaa~qia~~v~ 70 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELL-----EENPGAAMQIAGAVN 70 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHH-----HHCCCHHHHHHHHHH
Confidence 46788888888888888888888888887776643 223344444 122344555555543
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.84 E-value=1e+02 Score=21.47 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=35.1
Q ss_pred HHHHHHHhccchhhHHHHHHHHHH----hC-CCCchHHHHHHHHHHHhcCCchhHHHHh
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVK----AG-FSRDMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~----~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
-+-.-|.+.|++++|.++++.+.. .| ..+...+...+..++.+.|+.++...+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345666777777777777776642 23 2445666667777777777777665543
No 396
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=45.80 E-value=52 Score=18.10 Aligned_cols=49 Identities=16% Similarity=-0.007 Sum_probs=21.2
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 94 (164)
+|...-...+..+++.++. ++...+.++.+ .+|..+-...+.++.+.|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDP-EAIPALIELLK---DEDPMVRRAAARALGRIGD 60 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHH-HHHHHHHHHHT---SSSHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHHcCCH-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 3333333444444444422 33333333332 2444444555555555554
No 397
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.65 E-value=91 Score=22.95 Aligned_cols=57 Identities=5% Similarity=-0.006 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHH
Q 031208 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~ 156 (164)
.++++.++..++.|.-+.+--+.-.+++.=.+.+..++++.+-.. ..-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHH
Confidence 468888999999999999999999999999999999999987632 112555555554
No 398
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=45.57 E-value=52 Score=18.04 Aligned_cols=41 Identities=10% Similarity=-0.068 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHH
Q 031208 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103 (164)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 103 (164)
+.+.+++..-.+. .++..|...|+.++.+.|..+.|..+-+
T Consensus 41 ~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~~ 81 (83)
T PF00531_consen 41 EQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIEQ 81 (83)
T ss_dssp HHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHHh
Confidence 4555566655444 3344466777777777776666655543
No 399
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=45.18 E-value=26 Score=26.76 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=30.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC---CCcccHHHHHHHHHhccchhhHHHHHH
Q 031208 54 LTIDGSSLQALLLYNLMICNGFR---PDKFTFPFVIKACIASLAIEKGKEVHG 103 (164)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~ 103 (164)
++++|+.+..+.+|+...+.|-. .=...|+.|=.+|.-.+++++|.+++.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 67778888888888887776621 111234444455555556666666554
No 400
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=45.09 E-value=1.5e+02 Score=23.41 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH--------------HhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC--------------IASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--------------~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
+....|...+++.++++....|- +.++...+-... ...++...+...++++...|..|....-.
T Consensus 207 a~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~d 284 (515)
T COG2812 207 ARAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLED 284 (515)
T ss_pred HHHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 44556778999999999987652 444444433222 44578999999999999999888765443
No 401
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.97 E-value=1.1e+02 Score=21.78 Aligned_cols=14 Identities=14% Similarity=-0.187 Sum_probs=6.3
Q ss_pred HHhccCCcHHHHHH
Q 031208 22 LCSFYGKTDHALLV 35 (164)
Q Consensus 22 ~~~~~~~~~~a~~~ 35 (164)
+|-...++++|..-
T Consensus 40 afRnAk~feKakdc 53 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDC 53 (308)
T ss_pred HHHhhccHHHHHHH
Confidence 33344455544443
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.47 E-value=97 Score=20.89 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHcCCCCCc--ccH-----HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 60 SLQALLLYNLMICNGFRPDK--FTF-----PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~--~t~-----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
.+.|+.+++.+.+.--.|.. ... ...+-.|.+.|.+++|.++++.... .|+....-.-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 46788888887665333311 111 2234567888888888888887765 3443333444444444443
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.43 E-value=97 Score=20.89 Aligned_cols=60 Identities=7% Similarity=0.049 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHhCCCCc--h-----HHHHHHHHHHHhcCCchhHHHHhcccC-CCCcchHHHHHHH
Q 031208 95 IEKGKEVHGLAVKAGFSRD--M-----FVQSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISG 154 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~--~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~li~~ 154 (164)
.+.|..+|+.+.+.--.|. . .+--..+-.|.+.|.+++|.++++..- +++......-+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 3557777777765432221 1 122344567899999999999998764 4444433333333
No 404
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=43.69 E-value=31 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=12.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcc
Q 031208 57 DGSSLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~ 80 (164)
.|+.+.|.++++.++..|+.|...
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~l 33 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPIL 33 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHH
Confidence 466666666666666666555443
No 405
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.14 E-value=86 Score=19.88 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
++..+...++.-.|.++++++.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3444444444455555555555444
No 406
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=42.80 E-value=89 Score=20.53 Aligned_cols=78 Identities=8% Similarity=0.109 Sum_probs=52.6
Q ss_pred ChhHHHHHHHHHHHcC----CCCCc---ccHHHHHHHHHhccchhhHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCCc
Q 031208 59 SSLQALLLYNLMICNG----FRPDK---FTFPFVIKACIASLAIEKGKEVHGLAVK-AGFSRDMFVQSTLMDLYLKCGDV 130 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~----~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~ 130 (164)
+-.+|..+|..+.... +.++. .....++..+.+.. -.+++..+.+ .|+.|......-++..+++.-.+
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4567888877775432 22332 12222333333333 4567788885 89999999999999999998889
Q ss_pred hhHHHHhccc
Q 031208 131 DGGRKMFDKM 140 (164)
Q Consensus 131 ~~a~~~~~~m 140 (164)
+.+.++++.+
T Consensus 184 ~~~~riwD~~ 193 (199)
T smart00164 184 EIVLRIWDVL 193 (199)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 407
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=42.66 E-value=1.7e+02 Score=23.15 Aligned_cols=27 Identities=11% Similarity=0.457 Sum_probs=18.8
Q ss_pred HhcccCCCCcchHHHHHHHHHhcCCCC
Q 031208 136 MFDKMRVRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 136 ~~~~m~~~~~~~~~~li~~~~~~g~~~ 162 (164)
+++.+..||+..|+++...|+--|=++
T Consensus 307 lLNylTaPnVLIWSAV~aScs~pgif~ 333 (543)
T KOG2214|consen 307 LLNYLTAPNVLIWSAVCASCSVPGIFE 333 (543)
T ss_pred HhhccCCCceehhHHHHHhcccccccC
Confidence 333344578999999999887665544
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.65 E-value=67 Score=22.34 Aligned_cols=61 Identities=11% Similarity=-0.105 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHH----HcC-CCCCcccHHHHHHHHHhccchhhHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMI----CNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 105 (164)
..--.+-.-|.+.|+++.|.++|+.+. +.| ..+...+...+..++.+.|+.++...+-=++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333456778889999999999999883 233 2345566777788888888888777665444
No 409
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.20 E-value=84 Score=19.50 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhCCCCchH-HHHHHHHHHHhcCCchhHHHHhc
Q 031208 96 EKGKEVHGLAVKAGFSRDMF-VQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
++..++|..|..+|+..... -|...-..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777777655433 34444455556777777777765
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=42.04 E-value=1.3e+02 Score=21.77 Aligned_cols=83 Identities=8% Similarity=-0.082 Sum_probs=52.2
Q ss_pred HHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh----
Q 031208 20 LDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA---- 91 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---- 91 (164)
|++++..+++.++....-+.- +-.......=|-.|+|.+++..+.++-..-.+.--.-+...|..+..-|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 778888888888776443322 211222222344688999999999888887664323334457777655544
Q ss_pred -ccchhhHHHHH
Q 031208 92 -SLAIEKGKEVH 102 (164)
Q Consensus 92 -~~~~~~a~~~~ 102 (164)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 47787777765
No 411
>PRK11906 transcriptional regulator; Provisional
Probab=41.80 E-value=1.7e+02 Score=22.83 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=69.1
Q ss_pred cCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHH
Q 031208 26 YGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEV 101 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~ 101 (164)
.....+|.++-+...+ .|...-..+=.+..-.++.+.|..+|++-.. +.||. .+|-..-..+.-.|+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455666666665543 3444444444455777889999999999876 45765 3555555566778999999999
Q ss_pred HHHHHHhCCCCch---HHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 102 HGLAVKAGFSRDM---FVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 102 ~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+++..+. .|.. ++.-..++.|+..+ ++.|.+++-+
T Consensus 395 i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 8885543 3543 33344456676554 5667766644
No 412
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.59 E-value=46 Score=26.38 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC-----CCchHHHHHH---HHHHHhcCCchhHHHH
Q 031208 65 LLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-----SRDMFVQSTL---MDLYLKCGDVDGGRKM 136 (164)
Q Consensus 65 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~l---l~~~~~~~~~~~a~~~ 136 (164)
.++..+...|++|+..||++ .-+++...+-..|.+.|- .|.+..-.-- +..-+|...+++-+++
T Consensus 254 ~IleDl~~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~i 325 (712)
T KOG1147|consen 254 VILEDLSLLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRI 325 (712)
T ss_pred HHHHHHHHhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHH
Confidence 35666777899999999854 223333333333333331 2222222222 2334567778888888
Q ss_pred hcccCC
Q 031208 137 FDKMRV 142 (164)
Q Consensus 137 ~~~m~~ 142 (164)
|++|..
T Consensus 326 w~EM~k 331 (712)
T KOG1147|consen 326 WEEMKK 331 (712)
T ss_pred HHHHhc
Confidence 888874
No 413
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=41.57 E-value=36 Score=21.24 Aligned_cols=64 Identities=6% Similarity=0.094 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc--chhhHHHHHHHHHHhCCCCc--hHHHHHHHHHH
Q 031208 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL--AIEKGKEVHGLAVKAGFSRD--MFVQSTLMDLY 124 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~ 124 (164)
..|++.+-.-+|-..|++|+... .+++--.-.+ .+-.+..++.-++.+|+.|. +..|+.+=.+-
T Consensus 29 ~~ddvkeqI~K~akKGltpsqIG--viLRDshGi~q~r~v~G~kI~Rilk~~Gl~PeiPeDLy~likkAv 96 (151)
T KOG0400|consen 29 TADDVKEQIYKLAKKGLTPSQIG--VILRDSHGIGQVRFVTGNKILRILKSNGLAPEIPEDLYHLIKKAV 96 (151)
T ss_pred CHHHHHHHHHHHHHcCCChhHce--eeeecccCcchhheechhHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 36777777888888999998753 2332222222 33457788999999998885 45665554443
No 414
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=41.27 E-value=1.4e+02 Score=21.65 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPD 78 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 78 (164)
.|. ++.+.. .|+...|..+++.+...|..|-
T Consensus 203 if~-l~dai~-~~~~~~A~~~l~~L~~~g~~p~ 233 (326)
T PRK07452 203 SLQ-LADALL-QGNTGKALALLDDLLDANEPAL 233 (326)
T ss_pred HHH-HHHHHH-CCCHHHHHHHHHHHHHCCCcHH
Confidence 444 444433 3667777777777776665554
No 415
>COG5210 GTPase-activating protein [General function prediction only]
Probab=41.02 E-value=1.6e+02 Score=22.96 Aligned_cols=45 Identities=16% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC
Q 031208 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 66 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 110 (164)
++..+...|+.+...++..++..+.+....+.+.++++-+.-.|.
T Consensus 364 l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 444444555555555555555555555555555555555554443
No 416
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.94 E-value=1.5e+02 Score=22.12 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCcccHH--HHHHHHHhccchhhHHHHHHHHHH-----hCCCCchH-
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICN---GFRPDKFTFP--FVIKACIASLAIEKGKEVHGLAVK-----AGFSRDMF- 115 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~- 115 (164)
...++...-+.++.++|+++++++.+. -=.|+.+.|. .+.+.+...|+...+.+++++.++ .|++|++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 444555666678999999999999653 2245665554 345666788999999999998887 67777543
Q ss_pred HHHHHHHHH-HhcCCchh
Q 031208 116 VQSTLMDLY-LKCGDVDG 132 (164)
Q Consensus 116 ~~~~ll~~~-~~~~~~~~ 132 (164)
.|..+-.-| -+.|++..
T Consensus 158 ~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hHHHHHHHHHHHHHhHHH
Confidence 445554434 34455443
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.70 E-value=2.3e+02 Score=24.20 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCCc--H-----hHHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCcccHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPH--V-----FTWNLMIRALTIDGSS--LQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~-----~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
.-|..|+..|...|.-++|..+|.+....+ . .-+-.++.-+-+.+.. +.+++.-+-..+..-.-....+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 357889999999999999999999887422 1 1233344444444444 444444443333321111222222
Q ss_pred ------------HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 031208 85 ------------VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127 (164)
Q Consensus 85 ------------ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 127 (164)
-+-.+......+.+..+++++....-.++....+.++..|++.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1234456667778888999888777678889999999999754
No 418
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.44 E-value=53 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=12.5
Q ss_pred chhHHHHhcccCCCCcchHHHHHHHHHh
Q 031208 130 VDGGRKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
.+++.++++.+..++...+..++.++-.
T Consensus 43 ~~k~~~Lld~l~~kg~~af~~F~~~L~~ 70 (80)
T cd01671 43 QDKARKLLDILPRKGPKAFQSFLQALQE 70 (80)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 3444444444444444444444444433
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.34 E-value=1.4e+02 Score=22.47 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=9.8
Q ss_pred hcCChhHHHHHHHHHHHc
Q 031208 56 IDGSSLQALLLYNLMICN 73 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~ 73 (164)
..+++..|.++|+++.+.
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555544
No 420
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.24 E-value=60 Score=17.24 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=7.4
Q ss_pred hcCChhHHHHHHHHH
Q 031208 56 IDGSSLQALLLYNLM 70 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m 70 (164)
..|++=+|.++++++
T Consensus 11 n~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 11 NAGDFFEAHEVLEEL 25 (62)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHH
Confidence 345555555555555
No 421
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.15 E-value=1.4e+02 Score=21.44 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=10.3
Q ss_pred CchHHHHHHHHHHHhcCCch
Q 031208 112 RDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 112 ~~~~~~~~ll~~~~~~~~~~ 131 (164)
-|+..|..++.+|.-.|+..
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQ 214 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhH
Confidence 34455555555555555443
No 422
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.87 E-value=1.4e+02 Score=21.36 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIK 87 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~ 87 (164)
++++..-..++....+.|..+.-..+++.... ++..--..++.+.+-..+.+...++++.....+ +++.. ...++.
T Consensus 166 ~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~ 243 (324)
T PF11838_consen 166 SIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLA 243 (324)
T ss_dssp TS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHH
Confidence 34555566667777777776666666666553 566667778888888888888778887777654 33333 344555
Q ss_pred HHHhccch--hhHHHHHHHHH---HhCCCCchHHHHHHHHH----HHhcCCchhHHHHhcccC
Q 031208 88 ACIASLAI--EKGKEVHGLAV---KAGFSRDMFVQSTLMDL----YLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 88 ~~~~~~~~--~~a~~~~~~m~---~~g~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~ 141 (164)
++...+.. +.+++++..-- ...+.++......++.. ++.....++..++|+.-.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~ 306 (324)
T PF11838_consen 244 GLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKP 306 (324)
T ss_dssp HHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHC
T ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCc
Confidence 55533332 55555554211 11222222233444443 333445556666664433
No 423
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=39.56 E-value=16 Score=19.01 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
-..+...+|+.|..+...|....|+-.+.-|..
T Consensus 7 y~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 7 YHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred CCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 345667777777777677777766666655543
No 424
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.48 E-value=1.4e+02 Score=21.21 Aligned_cols=106 Identities=11% Similarity=0.016 Sum_probs=53.8
Q ss_pred HHhccCCcHHHHHHHhccCC---------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCc--ccHHHHHHH
Q 031208 22 LCSFYGKTDHALLVFSQIRC---------PHVFTWNLMIRALTIDGSSLQALLLYNLMIC--NGFRPDK--FTFPFVIKA 88 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~--~t~~~ll~~ 88 (164)
.+.-.+.+++|.++|.+-.. .-...|--.-..+.+.|.-++|-..|-++-. ..+.|.. .....-|..
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 44455678888888776542 1123344445555556666666666655532 1223432 233444566
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG 128 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 128 (164)
|..+|++.-|...+.++-+- ++.+..-+..-|..|-..+
T Consensus 103 yt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHH
Confidence 66777766666555444321 1233344444555443333
No 425
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.42 E-value=1.6e+02 Score=21.99 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=62.5
Q ss_pred hHhhhcCCCCHH--HHHHHHHHHhccCCcHHHHHHHhccCCCc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 031208 3 KIIRYGLSNDQL--LVRKLLDLCSFYGKTDHALLVFSQIRCPH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFR 76 (164)
Q Consensus 3 ~m~~~g~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 76 (164)
.+.+.|..|+.. ...+-+...++.|+.+.+..+++.-...+ ..-.+.+. ..+..|+. ++++.+.+.|..
T Consensus 53 ~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-~A~~~~~~----~iv~~Ll~~gad 127 (413)
T PHA02875 53 LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH-LATILKKL----DIMKLLIARGAD 127 (413)
T ss_pred HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHH-HHHHhCCH----HHHHHHHhCCCC
Confidence 456667666532 12334666777888888888887544211 11123333 33455554 344555566766
Q ss_pred CCccc--HHHHHHHHHhccchhhHHHHHHHHHHhCCCCch---HHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 77 PDKFT--FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM---FVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 77 p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
|+... -.+.+...+..|+.+.+..+ .+.|..++. .-. ..+...+..|+.+-+..+++.
T Consensus 128 ~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 128 PDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 65432 12344455556665543333 334433321 111 223334445666655555543
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.16 E-value=1.8e+02 Score=22.41 Aligned_cols=91 Identities=14% Similarity=-0.062 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh---------CCCCc
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA---------GFSRD 113 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---------g~~~~ 113 (164)
....-+-..|..+|+.+.|++.|.+.+..- .+..+..|-.+|....-.|++.....+..+.... .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 457778888999999999999999965532 2233456667777778888888877777666543 23444
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHh
Q 031208 114 MFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 114 ~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
...+..|.....+ ++..|...|
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHH
Confidence 5555555555444 455554443
No 427
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.78 E-value=1.1e+02 Score=19.93 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=24.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccch
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 95 (164)
++..+....+.-.|.++++++.+.+..++..|.=-.|+.+...|-+
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444444444556666666666665555555544445555555433
No 428
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=38.56 E-value=55 Score=25.18 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 64 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
-+++..+.+..++||.+.+.-++..|.++--.+.|-++|+-....|
T Consensus 459 p~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg 504 (586)
T KOG2223|consen 459 PKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG 504 (586)
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc
Confidence 3455666678899999999999999999988888888777554433
No 429
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=38.08 E-value=1e+02 Score=19.45 Aligned_cols=89 Identities=16% Similarity=-0.013 Sum_probs=35.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC-----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH-HH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR-----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK-AC 89 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~ 89 (164)
.......+...+....+...+.... ......+......+...+....+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 3334444444444444444444332 1222333333334444444445555554444322222 111111111 34
Q ss_pred HhccchhhHHHHHHHH
Q 031208 90 IASLAIEKGKEVHGLA 105 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m 105 (164)
...|+++.+...+.+.
T Consensus 141 ~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 141 YELGDYEEALELYEKA 156 (291)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4555555555555544
No 430
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.56 E-value=92 Score=18.64 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=14.3
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
-|..|+.-|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 345555555555555555555555443
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.40 E-value=82 Score=18.03 Aligned_cols=53 Identities=9% Similarity=-0.023 Sum_probs=26.7
Q ss_pred HhcCChhHHHHHHHHHH----HcCCCCC--cccH--HHHHHHHHhccchhhHHHHHHHHHH
Q 031208 55 TIDGSSLQALLLYNLMI----CNGFRPD--KFTF--PFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~----~~~~~p~--~~t~--~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
.+.|++.+|.+-+.+.- ..+..+. ...+ -.+.......|+.++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777755555542 2222221 1112 1223444556777777777766654
No 432
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.40 E-value=1.2e+02 Score=23.16 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC---------C--cHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC---------P--HVFTWNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~---------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
+.-.|+..++-.|++..|.++++.+.- | .+.++-.+=-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888999999999999987751 1 22344444556777889999999998873
No 433
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.23 E-value=1.7e+02 Score=21.65 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=36.2
Q ss_pred ChhHHHHHH-HHHHHcCCCCCc---ccHHHHHHHHHhccchhh-HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 59 SSLQALLLY-NLMICNGFRPDK---FTFPFVIKACIASLAIEK-GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 59 ~~~~a~~~~-~~m~~~~~~p~~---~t~~~ll~~~~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
.+++..... ++|+..+++-.. ..|+.++++---+.+-+. |.+.++++ .+|..|+.+++..|+.+..
T Consensus 270 p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHH
Confidence 344444433 334444443322 357777776655433221 33333333 4788899999988887754
No 434
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=36.60 E-value=79 Score=20.18 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.+-..|-..++..++++|.+.|+..+...|+-+++-.
T Consensus 118 ~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 118 LAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3445677888889999999999999998888777643
No 435
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=36.19 E-value=1.5e+02 Score=24.35 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=42.2
Q ss_pred cCCCCCcccHHHHHHHHHhccc----hhhHHHHHHHHHHh----CCCCc---hHHHHHHHHHHHhcCCchhHH
Q 031208 73 NGFRPDKFTFPFVIKACIASLA----IEKGKEVHGLAVKA----GFSRD---MFVQSTLMDLYLKCGDVDGGR 134 (164)
Q Consensus 73 ~~~~p~~~t~~~ll~~~~~~~~----~~~a~~~~~~m~~~----g~~~~---~~~~~~ll~~~~~~~~~~~a~ 134 (164)
.|++.|...|..|+.++....+ ++++.++++.+++. |+.+. ..--..+..-|+..|+.+...
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~ 283 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLK 283 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3678899999999999877544 46777777777653 66543 223345677888888655433
No 436
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=36.11 E-value=1.4e+02 Score=21.87 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=44.1
Q ss_pred hHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC--CCc--------------HhHHHH-HHHHHHhcCChhHHHH
Q 031208 3 KIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH--------------VFTWNL-MIRALTIDGSSLQALL 65 (164)
Q Consensus 3 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~--------------~~~~~~-li~~~~~~~~~~~a~~ 65 (164)
...+.|++.+......++..+. |+...+..-++++. .+| ..+++. =+.-....|+...|+.
T Consensus 152 ~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~ 229 (334)
T COG1466 152 RAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALR 229 (334)
T ss_pred HHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHH
Confidence 3456677777777777766665 55544444444332 111 111111 2333456788899999
Q ss_pred HHHHHHHcCCCCCc
Q 031208 66 LYNLMICNGFRPDK 79 (164)
Q Consensus 66 ~~~~m~~~~~~p~~ 79 (164)
+++++...|..|-.
T Consensus 230 ~l~~L~~~ge~p~~ 243 (334)
T COG1466 230 LLRDLLLEGEEPLK 243 (334)
T ss_pred HHHHHHHcCCcHHH
Confidence 99998888866644
No 437
>PRK09857 putative transposase; Provisional
Probab=36.00 E-value=1.7e+02 Score=21.17 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=27.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 113 (164)
...++.++..++++.+.+. .++......++..-+.+.|.-+++.++...|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445555555555555433 222333333444444444544455555555555555443
No 438
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.48 E-value=1.6e+02 Score=20.87 Aligned_cols=28 Identities=4% Similarity=0.086 Sum_probs=18.2
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHH
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQ 117 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 117 (164)
+..+.+.+|..+++++-+..+..+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 4556777788888887776655444333
No 439
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.14 E-value=2.3e+02 Score=22.59 Aligned_cols=76 Identities=7% Similarity=-0.016 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 64 LLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 64 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
....++....-...+...-.-++..|.+.|-.+.+..+.+.+-..- ....-|..-+.-+.++|+...+.++-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444333222344566778888999888888888888665443 234567788888889998887766665544
No 440
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=35.11 E-value=87 Score=17.65 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=13.4
Q ss_pred CchhHHHHhcccCCCCcchHHHHHHHH
Q 031208 129 DVDGGRKMFDKMRVRSVVSWTTMISGL 155 (164)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~li~~~ 155 (164)
..++|.++++.+..++...+....+++
T Consensus 44 ~~~kar~Lld~l~~kG~~A~~~F~~~L 70 (82)
T cd08330 44 NQEKMRKLFSFVRSWGASCKDIFYQIL 70 (82)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555555555544444444444
No 441
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=34.83 E-value=85 Score=17.42 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHcC
Q 031208 60 SLQALLLYNLMICNG 74 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~ 74 (164)
...+.++|.++.+.|
T Consensus 36 ~~s~l~lf~~Le~~~ 50 (77)
T cd00045 36 IKTPFDLFLVLERQG 50 (77)
T ss_pred cCCHHHHHHHHHHcC
Confidence 344455555554443
No 442
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=34.79 E-value=1.7e+02 Score=21.84 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
++.|.++.+++++.|+.++-.||--.++.+.. .+.-|..+++.+...
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~LIt--qIGNA~gyVRmirsg 328 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQLIT--QIGNAMGYVRMIRSG 328 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH--HHhHHHHHHHHHHHH
Confidence 56666666777777776666666555555543 233444444444443
No 443
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.43 E-value=2.1e+02 Score=21.85 Aligned_cols=130 Identities=10% Similarity=0.004 Sum_probs=66.2
Q ss_pred hHhhhcCCCCHHHH--HHHHHHHh--ccCCcHHHHHHHhccCCCc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 031208 3 KIIRYGLSNDQLLV--RKLLDLCS--FYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75 (164)
Q Consensus 3 ~m~~~g~~~~~~~~--~~li~~~~--~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 75 (164)
.+.+.|..++...- .+.+...+ ..|+.+.+..+++.-..++ ..-++. +...+..|. .-.++.+.+.+.|.
T Consensus 91 ~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~--~~~~iv~~Ll~~g~ 167 (480)
T PHA03100 91 LLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENL-LHLYLESNK--IDLKILKLLIDKGV 167 (480)
T ss_pred HHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcH-HHHHHHcCC--ChHHHHHHHHHCCC
Confidence 34556655432211 23344444 7888888888877654332 223333 334455552 12344555666776
Q ss_pred CCCccc--HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchH--------HHHHHHHHHHhcCC--chhHHHHhcc
Q 031208 76 RPDKFT--FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF--------VQSTLMDLYLKCGD--VDGGRKMFDK 139 (164)
Q Consensus 76 ~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--------~~~~ll~~~~~~~~--~~~a~~~~~~ 139 (164)
.++... -.+.+...+..|+.+ +++.+.+.|..++.. .+...+...++.|+ .+-+..+++.
T Consensus 168 din~~d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~ 239 (480)
T PHA03100 168 DINAKNRYGYTPLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY 239 (480)
T ss_pred CcccccCCCCCHHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence 665432 123455666666654 444445556555422 11344455556666 5555555554
No 444
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.99 E-value=1.5e+02 Score=20.11 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 44 VFTWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
...-+.++..+.-.|+++.|-+.|.-+.+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 345677888888899999999999888754
No 445
>PRK09687 putative lyase; Provisional
Probab=33.79 E-value=1.8e+02 Score=20.82 Aligned_cols=81 Identities=11% Similarity=0.033 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSS----LQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
.+|..+.-..+..+...|..+....+..-+..+|...-...+.+++..|+. +++..++..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 455555666666666666655544444444456666656666666776653 3566666665332 2444444444
Q ss_pred HHHHHhc
Q 031208 86 IKACIAS 92 (164)
Q Consensus 86 l~~~~~~ 92 (164)
+.++...
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444444
No 446
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=33.76 E-value=43 Score=20.38 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCCCch
Q 031208 99 KEVHGLAVKAGFSRDM 114 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~ 114 (164)
..++++|.++|..|+.
T Consensus 55 ~lv~~EM~~RGY~~~~ 70 (120)
T TIGR02328 55 LLVMEEMATRGYHVSK 70 (120)
T ss_pred HHHHHHHHHcCCCCCh
Confidence 4678899999999987
No 447
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.68 E-value=2.9e+02 Score=23.27 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
.++...|+.+.-.|++++|-.+.-.|...+..-|...+..++..+.......+ +....-+.+...|..+|..+.. .
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~ 468 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S 468 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-H
Confidence 34445555555555555555555555555555555444444444433322111 1111112345667888877776 3
Q ss_pred chhhHHHHHHHHHH---------hCC-------CCchHHHHHHHHHHHhcCCchhHHHHhcccCCCC
Q 031208 94 AIEKGKEVHGLAVK---------AGF-------SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS 144 (164)
Q Consensus 94 ~~~~a~~~~~~m~~---------~g~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 144 (164)
+...-.++..+.-. ... .-+...-..|...|...+++.+|..++-....++
T Consensus 469 ~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 469 DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 33322222221100 011 1122333448899999999999999887777553
No 448
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=33.38 E-value=37 Score=25.99 Aligned_cols=45 Identities=11% Similarity=-0.082 Sum_probs=29.7
Q ss_pred HHhccCCcHHHHHHHhccCCCcHh-------HHHHHHHHHHhcCChhHHHHH
Q 031208 22 LCSFYGKTDHALLVFSQIRCPHVF-------TWNLMIRALTIDGSSLQALLL 66 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~ 66 (164)
-+|+.|+......+|+...+.... .|+.|=++|.-.+++++|++.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 478899999999999987754333 344445555555566666554
No 449
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=33.32 E-value=98 Score=17.71 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=16.7
Q ss_pred hcCCchhHHHHhcccCCCCcchHHHHHHHHHh
Q 031208 126 KCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
.....+.|..+++-++ ++...|.+.++++-.
T Consensus 42 ~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~ 72 (84)
T cd08810 42 RTTSRKQAGKLLDILA-ENPKGLDALIESIRR 72 (84)
T ss_pred cCCcHHHHHHHHHHHh-hCchHHHHHHHHHHH
Confidence 4444555555555555 555555555555544
No 450
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.27 E-value=1e+02 Score=17.99 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
-+...+++..-.+. .....|+..|+.++...+.-..|..+-+.+...|
T Consensus 47 ~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 45555555555432 1335567888888888888888888877776665
No 451
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=33.23 E-value=69 Score=17.15 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=17.6
Q ss_pred hcCChhHHHHHHHHHHHcC-CCCCc
Q 031208 56 IDGSSLQALLLYNLMICNG-FRPDK 79 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~-~~p~~ 79 (164)
...+++.|...|.++...| ++|+.
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhh
Confidence 3568899999999997654 55543
No 452
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=33.12 E-value=36 Score=22.89 Aligned_cols=66 Identities=11% Similarity=0.177 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 77 (164)
+.+.+...+++-|...|+.+...++.-.+. +...-.+.++..|-+.|-++.-.-++.+....=+.|
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD-~~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTP 85 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLD-PSSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTP 85 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCC-HHhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHH
Confidence 456789999999999999999998887665 222223556666777766655555554443333333
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.71 E-value=1.9e+02 Score=20.71 Aligned_cols=106 Identities=14% Similarity=-0.022 Sum_probs=58.5
Q ss_pred cHHHHHHHhccCC--------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHH
Q 031208 29 TDHALLVFSQIRC--------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKE 100 (164)
Q Consensus 29 ~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 100 (164)
.+.|.+.|+.+.. .+...-..++....+.|..+.-..+++..... ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5666677765542 13445556666777777655544444444432 355666788899988889888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCc--hhHHHHhc
Q 031208 101 VHGLAVKAGFSRDMFVQSTLMDLYLKCGDV--DGGRKMFD 138 (164)
Q Consensus 101 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~ 138 (164)
+++.....+..++... ..++.++...+.. +.+.+++.
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 8888887542233333 3444444433333 55555543
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.26 E-value=1.9e+02 Score=20.73 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=17.6
Q ss_pred CCCcccHHHHHHHHHhccchhhHH
Q 031208 76 RPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 76 ~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
..|+..|..++.+|.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 467778888888888888665443
No 455
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=32.23 E-value=3.1e+02 Score=23.10 Aligned_cols=61 Identities=20% Similarity=0.010 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC-CcHhH------------HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PHVFT------------WNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
|.+..|.-+-..-.+.-.++.|..-|-+... +.+.. -..=+. +--|++++|.++|-+|.+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchh
Confidence 6666776666655555556666655554442 11111 111111 2246777787777777543
No 456
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=32.23 E-value=1.9e+02 Score=20.55 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCCcHH---HHHHHhccC--CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDH---ALLVFSQIR--CPH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~---a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
.+...++.++...+..+. |.++.+.+. -|+ ..++-.-|..+.+.++.+.+.+.+.+|... +......+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 456667778877776554 555555553 244 455556677777789999999999999876 3334556777777
Q ss_pred HHHhc--cchhhHHHHHHHHHHhCCCCchH
Q 031208 88 ACIAS--LAIEKGKEVHGLAVKAGFSRDMF 115 (164)
Q Consensus 88 ~~~~~--~~~~~a~~~~~~m~~~g~~~~~~ 115 (164)
.+... ...+.+...+..+....+.|...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 66333 34556777777777666666653
No 457
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=31.93 E-value=2.5e+02 Score=21.99 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=58.0
Q ss_pred cCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH--------HhcCCchhHHHHhcccCC--
Q 031208 73 NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY--------LKCGDVDGGRKMFDKMRV-- 142 (164)
Q Consensus 73 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--------~~~~~~~~a~~~~~~m~~-- 142 (164)
..+.||.++.|-+-..++..-..+....+|+-..+++ .|-.+-+-+||-.. .++..-+++.++++.|+.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 3588999998888887777777888888888887776 56555555544322 245566789999999872
Q ss_pred --CCcchHHHHHHHHH
Q 031208 143 --RSVVSWTTMISGLA 156 (164)
Q Consensus 143 --~~~~~~~~li~~~~ 156 (164)
.|+.-+-+|.+-|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 25555666665554
No 458
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.59 E-value=2.2e+02 Score=21.15 Aligned_cols=19 Identities=5% Similarity=0.422 Sum_probs=14.8
Q ss_pred CcchHHHHHHHHHhcCCCC
Q 031208 144 SVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~ 162 (164)
-..+|.-|+.+++..|+.+
T Consensus 320 hlK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred HHHhhhHHHHHHhcCChHH
Confidence 3457888999999888765
No 459
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=31.39 E-value=1.6e+02 Score=19.71 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCc-ccHHHHHHHHHhcc----c-------hhhHHHHHHHHHHh
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMIC-----NGFRPDK-FTFPFVIKACIASL----A-------IEKGKEVHGLAVKA 108 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~-~t~~~ll~~~~~~~----~-------~~~a~~~~~~m~~~ 108 (164)
-|...+.-++......++.+++++-.. -.+.|+. .++..+=.++...+ + +++|...|+....
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~- 108 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD- 108 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh-
Confidence 466666666555554445444444322 1255655 35555544443332 2 2333333333333
Q ss_pred CCCCchHHHHHHHHHHH
Q 031208 109 GFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 109 g~~~~~~~~~~ll~~~~ 125 (164)
.+|+..+|+.-+....
T Consensus 109 -~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 109 -EDPNNELYRKSLEMAA 124 (186)
T ss_dssp -H-TT-HHHHHHHHHHH
T ss_pred -cCCCcHHHHHHHHHHH
Confidence 3677777777777764
No 460
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.22 E-value=2.7e+02 Score=22.17 Aligned_cols=85 Identities=6% Similarity=-0.076 Sum_probs=52.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
+...|+++.+...+...... +.....+.-++++...+.|+.+.|..+-+.|....++..+. .......--..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei-~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV-LTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh-eeeecccHHHHhHHHHH
Confidence 45567778777777666432 33444566778888888888888888888887776544332 22222222334556666
Q ss_pred HHHhccc
Q 031208 134 RKMFDKM 140 (164)
Q Consensus 134 ~~~~~~m 140 (164)
.-.++++
T Consensus 411 ~~~wk~~ 417 (831)
T PRK15180 411 YHYWKRV 417 (831)
T ss_pred HHHHHHH
Confidence 6666554
No 461
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=31.22 E-value=16 Score=20.72 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=10.9
Q ss_pred hhhcCCCCHHHHHHHHHHHhccCC
Q 031208 5 IRYGLSNDQLLVRKLLDLCSFYGK 28 (164)
Q Consensus 5 ~~~g~~~~~~~~~~li~~~~~~~~ 28 (164)
.+..+..+..+|...|++|++.|.
T Consensus 16 ~QYeLsk~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 16 KQYELSKNEAVYRVFINGYARNGF 39 (88)
T ss_dssp HHHTTTTTTTB------TTSS--E
T ss_pred HHHHhhcccceeeeeecccccceE
Confidence 344566777888888888888774
No 462
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.06 E-value=51 Score=13.71 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=7.8
Q ss_pred chhhHHHHHHHHHHh
Q 031208 94 AIEKGKEVHGLAVKA 108 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~ 108 (164)
+.+.+..+++.+.+.
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 345555555555543
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.68 E-value=2.4e+02 Score=21.40 Aligned_cols=53 Identities=11% Similarity=-0.040 Sum_probs=36.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc------cchhhHHHHHH
Q 031208 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS------LAIEKGKEVHG 103 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------~~~~~a~~~~~ 103 (164)
...+.+.+++..|..+|.++.+..+.|....+-.++..+++. -++++|.+.++
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 335567889999999999998887767666555555444443 34566666666
No 464
>smart00031 DED Death effector domain.
Probab=30.67 E-value=1e+02 Score=17.13 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhH
Q 031208 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98 (164)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 98 (164)
..+.++|.++.+.|.- +......+...+...++.+..
T Consensus 38 ~~~ldlf~~Le~~~~l-~~~nl~~L~elL~~i~R~DLl 74 (79)
T smart00031 38 KTFLDLFSALEEQGLL-SEDNLSLLAELLYRLRRLDLL 74 (79)
T ss_pred CCHHHHHHHHHHcCCC-CCccHHHHHHHHHHcCHHHHH
Confidence 4555555555444321 122223344444444444433
No 465
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.54 E-value=2.8e+02 Score=22.01 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=15.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCc
Q 031208 57 DGSSLQALLLYNLMICNGFRPDK 79 (164)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~ 79 (164)
.++...|+.+++++...|..|..
T Consensus 270 ~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 270 HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 36677777777777776665543
No 466
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=30.25 E-value=64 Score=14.59 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=6.4
Q ss_pred HHHHHHHhCCCCc
Q 031208 101 VHGLAVKAGFSRD 113 (164)
Q Consensus 101 ~~~~m~~~g~~~~ 113 (164)
.++++...|+..+
T Consensus 4 ~v~~L~~mGf~~~ 16 (37)
T smart00165 4 KIDQLLEMGFSRE 16 (37)
T ss_pred HHHHHHHcCCCHH
Confidence 3445555565433
No 467
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.17 E-value=1.9e+02 Score=20.08 Aligned_cols=55 Identities=4% Similarity=-0.199 Sum_probs=26.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH-hccchhhHHHHHHHH
Q 031208 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI-ASLAIEKGKEVHGLA 105 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m 105 (164)
...+-..++++++...++++...+..++..--+.+-.+|- ..|....+++++..+
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3444556666666666666666555555544444444442 223334444444444
No 468
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=30.04 E-value=1.1e+02 Score=17.35 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
....+.......|+.+.|..+++.+. . .|+ -|..+++++...|....|.
T Consensus 34 d~e~I~a~~~~~G~~~aa~~Ll~~L~-r--~~~--Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 34 DKERIQAAENNSGNIKAAWTLLDTLV-R--RDN--WLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-c--cCC--hHHHHHHHHHHcCCHHHHH
Confidence 34444444455666777777777666 2 233 3456666666666554443
No 469
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=29.77 E-value=1.1e+02 Score=17.11 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=8.4
Q ss_pred chhhHHHHHHHHHHhCC
Q 031208 94 AIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~ 110 (164)
+++++...+.++...|+
T Consensus 19 ~~~~~~~~~~~l~~~G~ 35 (89)
T PF08542_consen 19 DFKEARKKLYELLVEGY 35 (89)
T ss_dssp CHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 55555555555554454
No 470
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=29.53 E-value=73 Score=17.82 Aligned_cols=35 Identities=9% Similarity=-0.135 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 61 LQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
+.+..+++.-... ++ .|...|+.++.+.|+.+-+.
T Consensus 40 ~p~~~lL~~W~~r---~~-ATv~~L~~aL~~i~R~Di~~ 74 (77)
T cd08311 40 SPVRTLLADWSAQ---EG-ATLDALCTALRRIQREDIAE 74 (77)
T ss_pred hHHHHHHHHHHHC---cC-chHHHHHHHHHHcChHHHHH
Confidence 4555555555432 33 56666777776666665544
No 471
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=29.51 E-value=1.2e+02 Score=19.89 Aligned_cols=63 Identities=17% Similarity=0.037 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHHHhC----CCCch---HHHHHHHHHHHhcCCchhHHHHhcccC-CCCcchHHHHHHHHH
Q 031208 94 AIEKGKEVHGLAVKAG----FSRDM---FVQSTLMDLYLKCGDVDGGRKMFDKMR-VRSVVSWTTMISGLA 156 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~li~~~~ 156 (164)
+-.+|..++..+.... +.++. .....++..+.+..+.+....+-+... .+...+...++..++
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~ 178 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFA 178 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 4555666666554432 22331 233344444455554433333332232 344444444444444
No 472
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=29.46 E-value=1.8e+02 Score=23.03 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=66.3
Q ss_pred hhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc
Q 031208 5 IRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 5 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
++.-..|+.....+.| +...|+++.+...+..... ....+-.+++....+.|+++.|..+-.-|....+.-.++.
T Consensus 317 r~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 317 RNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred HhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 3444445554444433 4567888888887776552 4556778899999999999999999999988776544321
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
.......-+.|-++++.-.|+++..-
T Consensus 395 -~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 395 -TVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred -eeecccHHHHhHHHHHHHHHHHHhcc
Confidence 12222233445677777777777653
No 473
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=29.01 E-value=83 Score=20.00 Aligned_cols=101 Identities=8% Similarity=-0.030 Sum_probs=50.6
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC----------CcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC----------PHVFTWNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
.++++.-.+|+...+...|....-..-++.+-++.+.-.+ .+...|..++.++.....+..--.++.+..
T Consensus 7 ~~lr~~a~~~~~e~f~~ai~e~lV~EmYE~igKlRN~~~~G~~~~lp~~A~~~A~~~AmliGL~Nr~~ytT~a~~l~Eal 86 (143)
T PF07827_consen 7 EKLREAAESPESEEFRQAIREFLVGEMYEFIGKLRNARQSGPHTYLPYLAMQLAWYGAMLIGLHNRTLYTTSARVLPEAL 86 (143)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHCT---SSCCCHHHHHT
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHHHHHHHHhccceeeccccccHHHh
Confidence 3455555566777777777666555555555555553321 234557777777777776666666666665
Q ss_pred HcCCCCCcccHHHHHHHHHhccchhhHHHHHHHH
Q 031208 72 CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105 (164)
Q Consensus 72 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 105 (164)
+..-.|+- |..+ .-....|+..++..+++..
T Consensus 87 ~Lp~rP~G--yd~l-~~lvm~G~L~d~~~i~~~c 117 (143)
T PF07827_consen 87 SLPSRPSG--YDEL-AQLVMSGQLTDPEKIYESC 117 (143)
T ss_dssp TSSS--TT--HHHH-HHHHHHTB---HHHHHHHH
T ss_pred cCCCCCcc--HHHH-HHHHhccccCCHHHHHHHH
Confidence 54333433 3322 3344556666666655544
No 474
>PF14162 YozD: YozD-like protein
Probab=28.66 E-value=92 Score=15.93 Aligned_cols=19 Identities=16% Similarity=-0.031 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhCCCCchH
Q 031208 97 KGKEVHGLAVKAGFSRDMF 115 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~ 115 (164)
-|.-++.++.++|+.|+..
T Consensus 13 IAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHccCCCcHH
Confidence 3556677777777777653
No 475
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=28.46 E-value=3.7e+02 Score=22.88 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred hcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC------------------CcHhHHHHHHHHHHhcCChhHHHHHHH
Q 031208 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC------------------PHVFTWNLMIRALTIDGSSLQALLLYN 68 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~ 68 (164)
.|+..+......++... .|++..+..+++++.. .+......++.+.. .++...++.+++
T Consensus 195 EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~D~a~al~~l~ 271 (824)
T PRK07764 195 EGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA-AGDGAALFGTVD 271 (824)
T ss_pred cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 36666666555544433 3666666666665421 11222233444443 567888888888
Q ss_pred HHHHcCCCCC
Q 031208 69 LMICNGFRPD 78 (164)
Q Consensus 69 ~m~~~~~~p~ 78 (164)
++.+.|..|.
T Consensus 272 ~Li~~G~dp~ 281 (824)
T PRK07764 272 RVIEAGHDPR 281 (824)
T ss_pred HHHHcCCCHH
Confidence 8887776543
No 476
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=28.08 E-value=77 Score=15.62 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCCCCccc
Q 031208 65 LLYNLMICNGFRPDKFT 81 (164)
Q Consensus 65 ~~~~~m~~~~~~p~~~t 81 (164)
++..++.+.|++|-++|
T Consensus 10 eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 10 ELRAELKQYGLPPGPIT 26 (44)
T ss_pred HHHHHHHHcCCCCCCcC
Confidence 46667777887776654
No 477
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=27.60 E-value=61 Score=22.57 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHcCCCCCccc
Q 031208 61 LQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~t 81 (164)
..|+.+|+.+.+.|++|+..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 579999999999999999754
No 478
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.58 E-value=2e+02 Score=19.45 Aligned_cols=94 Identities=15% Similarity=0.030 Sum_probs=65.6
Q ss_pred HHHHhccCCcHHHHHHHhccCC----CcHh-HHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC----PHVF-TWNLMIR--ALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
-...+..|+...|...|++.-. |-.. --..|=. .+..+|.++++..-.+-+-..+-+.....-..|--+-.+.
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 3456678999999999998762 2111 1111111 3467888998888877776666555555666777777899
Q ss_pred cchhhHHHHHHHHHHhCCCCc
Q 031208 93 LAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~ 113 (164)
|++..|.+.|.++....-.|.
T Consensus 181 gd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 181 GDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred cchHHHHHHHHHHHccccCcH
Confidence 999999999999876544454
No 479
>PRK01381 Trp operon repressor; Provisional
Probab=27.44 E-value=86 Score=18.60 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHV 44 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 44 (164)
+|+..-|..+++.+....+.+....+|+.+..|+.
T Consensus 3 ~~~~~~W~~~v~ll~~a~~~~~~~~~l~~llTp~E 37 (99)
T PRK01381 3 EQENQEWQRFVDLLKQAFEEDLHLPLLTLLLTPDE 37 (99)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHHHHhCCHHH
Confidence 45667788888888888888888888888776654
No 480
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.35 E-value=3.4e+02 Score=22.10 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=42.2
Q ss_pred hhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC-----------------CCcHhHHHHHHHHHHhcCChhHHHHHHH
Q 031208 6 RYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-----------------CPHVFTWNLMIRALTIDGSSLQALLLYN 68 (164)
Q Consensus 6 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 68 (164)
+.|+..+......++... .|++..|...+++.. ..+...+-.++.+ ...++...|+.+++
T Consensus 195 ~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~da-i~~~~~~~al~ll~ 271 (614)
T PRK14971 195 KEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDA-LLAGKVSDSLLLFD 271 (614)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 457766666555554433 467777777665532 1222223233333 34468889999999
Q ss_pred HHHHcCCCCCc
Q 031208 69 LMICNGFRPDK 79 (164)
Q Consensus 69 ~m~~~~~~p~~ 79 (164)
++...|..|..
T Consensus 272 ~Ll~~g~~~~~ 282 (614)
T PRK14971 272 EILNKGFDGSH 282 (614)
T ss_pred HHHHcCCCHHH
Confidence 98888877653
No 481
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.90 E-value=1.1e+02 Score=18.29 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=6.8
Q ss_pred CCCCCcccHHHHHHHHH
Q 031208 74 GFRPDKFTFPFVIKACI 90 (164)
Q Consensus 74 ~~~p~~~t~~~ll~~~~ 90 (164)
+..++...+...+++..
T Consensus 79 ~~~~d~e~l~~~~~lHl 95 (105)
T TIGR03184 79 GPELDDESLAKALNLHV 95 (105)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 33344444444444433
No 482
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=26.85 E-value=3.4e+02 Score=21.87 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 109 GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 109 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|...-.+.+.-+-.-|....++++|.+++..+.
T Consensus 200 g~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 200 GEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 444445556666677888889999999998665
No 483
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=26.65 E-value=2.5e+02 Score=20.22 Aligned_cols=65 Identities=17% Similarity=-0.032 Sum_probs=46.6
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP---DKFTFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
...+|......+.+.|.++.|...+.++...+..+ .....-.-.+..-..|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567778888899999999999999987654222 233334446667777888888888877766
No 484
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=26.52 E-value=1.3e+02 Score=16.85 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHH
Q 031208 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHG 103 (164)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 103 (164)
.+.++|..|.+.|. .++.....|...+...|+.+.+..+.+
T Consensus 38 ~~~dlf~~Le~~~~-i~~~nl~~L~~lL~~i~R~DL~~~i~~ 78 (84)
T PF01335_consen 38 SGLDLFEELEKRGL-ISPDNLSLLKELLKRIGRPDLLKKIEE 78 (84)
T ss_dssp SHHHHHHHHHHTTS-SSTTBHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHcCC-CCCccHHHHHHHHHHhCHHHHHHHHHH
Confidence 45566666655442 122223445555555565555554443
No 485
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=26.43 E-value=1.2e+02 Score=19.62 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 60 SLQALLLYNLMICNG-FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
.+.-+.++.++.+.| +..+...--.-|....+.++++.|.+++-.+...
T Consensus 70 ~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 70 IEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444444443333 2223333333344445667777777777766543
No 486
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=26.34 E-value=1.5e+02 Score=17.51 Aligned_cols=53 Identities=17% Similarity=0.035 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCC
Q 031208 60 SLQALLLYNLMICNGFRP---DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 112 (164)
.+.|+++..-|-...-.| |+.|-.-+++.+-..|-...+..+...-.+.|..|
T Consensus 25 IdKALDFIggMntSas~P~sMdESTAKGi~KyL~elGvPasa~dv~aRg~qeGWn~ 80 (119)
T PF08986_consen 25 IDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAADVTARGEQEGWNP 80 (119)
T ss_dssp HHHHHHHHHTS-TT-SS--HCCCHHHHHHHHHHHHCT----HHHHHHHHHHCT--H
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 466777777774443333 44555666666666666666666666666665544
No 487
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.24 E-value=3.4e+02 Score=21.62 Aligned_cols=67 Identities=13% Similarity=0.014 Sum_probs=49.6
Q ss_pred CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCC
Q 031208 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112 (164)
Q Consensus 41 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 112 (164)
.+....|..|+..+.. -+.++..++++++... + ...+..++++....|.......+.+.+....+.+
T Consensus 307 ~~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~ 373 (574)
T smart00638 307 EPAAAKFLRLVRLLRT-LSEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP 373 (574)
T ss_pred cchHHHHHHHHHHHHh-CCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH
Confidence 4555678888877554 4578888888888641 1 5688999999999999988877777777666543
No 488
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.16 E-value=2.2e+02 Score=19.43 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=25.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC------CcHhHHHHHHH-HHHhcCC--hhHHHHHHHHHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC------PHVFTWNLMIR-ALTIDGS--SLQALLLYNLMI 71 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~ 71 (164)
++.........|++++|..-++.+.+ .-...|..+.. +++..+. +-+|..++.-..
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~ 96 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILK 96 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHh
Confidence 34444444455566666655555431 22334444444 3444442 334444444443
No 489
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.15 E-value=2.7e+02 Score=21.00 Aligned_cols=58 Identities=9% Similarity=-0.062 Sum_probs=34.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 50 MIRALTIDGSSLQALLLYNLMICN-GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
|..+..+.|+..+|.+.|+++.+. .+..-...-..||.++.....+.+...++....+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333445678999999999887543 1111112334567777777666666666555443
No 490
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.12 E-value=4.8e+02 Score=23.34 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH--
Q 031208 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL-- 125 (164)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-- 125 (164)
.-+..++.-.....++..+..+|.-.|-+.+..-- +-+-..|..=.++.+..-++.|..--+.++...+.++..+|-
T Consensus 527 q~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~-Idfl~~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l 605 (1251)
T KOG0414|consen 527 QFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEA-IDFLVRCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQL 605 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHH
Confidence 33444555555566666666666655533333221 122333444467777777777777666677667777777664
Q ss_pred --hcCCchh-------HHHHhcccC---CCCcchHHHHHHHHHhcCCCCC
Q 031208 126 --KCGDVDG-------GRKMFDKMR---VRSVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 126 --~~~~~~~-------a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 163 (164)
+...-+. |..++.-+. ..+..+...++..+...|.++.
T Consensus 606 ~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~~~~Id~ 655 (1251)
T KOG0414|consen 606 YFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVARGYIDA 655 (1251)
T ss_pred hccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCccH
Confidence 2222222 444444443 2355666667777777666653
No 491
>COG5210 GTPase-activating protein [General function prediction only]
Probab=26.08 E-value=3.2e+02 Score=21.39 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=17.2
Q ss_pred CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 41 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
.....++..++..+.+....+.++.+++-+--.|
T Consensus 374 ~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg 407 (496)
T COG5210 374 VLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEG 407 (496)
T ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 3444445555555555555555555555554443
No 492
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=26.01 E-value=1e+02 Score=15.56 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=10.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC
Q 031208 56 IDGSSLQALLLYNLMICNGFRPD 78 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~ 78 (164)
..|--.+++++.-++.+.|+.|.
T Consensus 16 ntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 16 NTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred cCCCCHHHHHHHHHHHHCCCCHH
Confidence 33444445555555555554443
No 493
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=25.91 E-value=1.4e+02 Score=17.01 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=30.6
Q ss_pred CcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 031208 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 28 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 77 (164)
+.+...+..+.....|..+....+.+++..-..+.|..++..+.-+|-+|
T Consensus 21 N~~AVq~~~e~~~~~nqktL~vFl~ALa~~YGe~~a~~~~~~~~ls~~tP 70 (81)
T PF09119_consen 21 NTNAVQKYVENQRVENQKTLQVFLEALAERYGEETANKVLDKMDLSGGTP 70 (81)
T ss_dssp -HHHHHHHHHCS--S-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH-----
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCC
Confidence 44556666666667788888888888888777788888888775544444
No 494
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=25.51 E-value=1.2e+02 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHcCCCCCcc----cHHHHHHHHHhcc
Q 031208 60 SLQALLLYNLMICNGFRPDKF----TFPFVIKACIASL 93 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~ 93 (164)
...|.+++.++.+.|++||.. +....+.+|+-.|
T Consensus 241 ~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G 278 (561)
T COG2987 241 LGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVG 278 (561)
T ss_pred eccHHHHHHHHHHcCCCCceecccccccCcccCcCCCc
Confidence 345556666666666666543 2334444444444
No 495
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=25.33 E-value=1.7e+02 Score=17.81 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=44.0
Q ss_pred CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC------------------CCchHHHHHHHHHHHhcCCchhHHHH
Q 031208 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF------------------SRDMFVQSTLMDLYLKCGDVDGGRKM 136 (164)
Q Consensus 75 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------------------~~~~~~~~~ll~~~~~~~~~~~a~~~ 136 (164)
-.|..+|..-|...++.+. ..+..++.+|.+.|. .+....+...+......|+++.|.++
T Consensus 15 ~~~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~l 92 (115)
T PF12793_consen 15 GQPVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQL 92 (115)
T ss_pred CCCcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456667777777776643 347788888888664 12345666777778889999999999
Q ss_pred hc
Q 031208 137 FD 138 (164)
Q Consensus 137 ~~ 138 (164)
++
T Consensus 93 l~ 94 (115)
T PF12793_consen 93 LD 94 (115)
T ss_pred HH
Confidence 88
No 496
>PHA02940 hypothetical protein; Provisional
Probab=25.26 E-value=2.6e+02 Score=19.92 Aligned_cols=70 Identities=9% Similarity=-0.127 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
...+..-|.+.+..++-..+-+++...- +-.++.--...+.+.+..-++++.+..-.....+|+.|..+.
T Consensus 145 v~~la~~yvq~vk~d~r~~~a~~l~keL--------s~~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~al 214 (315)
T PHA02940 145 VILLAGRYVQDVKKDDRRTIANKLSKEL--------SWTIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRAL 214 (315)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhh--------hHHHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 3445566666666666555555553320 112222233345666666677777776677788998887765
No 497
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=25.21 E-value=3.8e+02 Score=21.83 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=40.1
Q ss_pred hcCCCCHHHHHHHHHHHhccCCcHHHHHHHhccC-----------------CCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 031208 7 YGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR-----------------CPHVFTWNLMIRALTIDGSSLQALLLYNL 69 (164)
Q Consensus 7 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 69 (164)
.|+..+......++... .|++..+...+++.. ..+....-.++.+ ...|+.+.|+..+++
T Consensus 207 egi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if~L~~a-i~~gd~~~Al~~l~~ 283 (598)
T PRK09111 207 EGVEVEDEALALIARAA--EGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEA-LMRGDVAAALAEFRA 283 (598)
T ss_pred cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 46666655554444433 366666666665541 1111122234443 445788889988888
Q ss_pred HHHcCCCCCc
Q 031208 70 MICNGFRPDK 79 (164)
Q Consensus 70 m~~~~~~p~~ 79 (164)
+...|..|-.
T Consensus 284 l~~~G~~p~~ 293 (598)
T PRK09111 284 QYDAGADPVV 293 (598)
T ss_pred HHHcCCCHHH
Confidence 8887776653
No 498
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.90 E-value=1.8e+02 Score=17.92 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=52.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc-----CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHHH
Q 031208 51 IRALTIDGSSLQALLLYNLMICN-----GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLY 124 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~ 124 (164)
...+...+.-.....++.+..+. ..+-|. -|--+--.|+.. .+.+.++|..|...|+... ..-|...-..+
T Consensus 33 ~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~-RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 33 EENYPSGGKQSGLLELLERCIRKFKDDERYKNDE-RYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFL 109 (126)
T ss_dssp HHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-H-HHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHH
T ss_pred HHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCH-HHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 33444445555566666665432 112222 232333333332 2389999999999987665 45667777888
Q ss_pred HhcCCchhHHHHhcc
Q 031208 125 LKCGDVDGGRKMFDK 139 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~ 139 (164)
-+.|++.+|.++|+.
T Consensus 110 e~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 110 EKRGNFKKADEIYQL 124 (126)
T ss_dssp HHTT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHh
Confidence 899999999999863
No 499
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=24.87 E-value=2.1e+02 Score=18.90 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLM 70 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m 70 (164)
-.++..++...|..++|.+++...
T Consensus 118 ~EAlaAaLYI~G~~deA~~lls~F 141 (179)
T COG2042 118 AEALAAALYIVGFKDEASELLSKF 141 (179)
T ss_pred HHHHHHHHHHhCcHHHHHHHHhhC
Confidence 344444455555555555554443
No 500
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=24.83 E-value=38 Score=19.52 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=21.5
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCcH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHV 44 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 44 (164)
|..++.++....+.+++..+|+.+..|+.
T Consensus 3 ~~~l~~~i~~l~~~ee~~~f~~dL~T~~E 31 (87)
T PF01371_consen 3 WDELFEAILSLKDEEECYDFFEDLCTPDE 31 (87)
T ss_dssp HHHHHHHHHCHHCHHCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHH
Confidence 66677777778888888888887776544
Done!