Query 031208
Match_columns 164
No_of_seqs 163 out of 1405
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 17:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.3E-36 1.1E-40 223.6 14.2 158 1-158 49-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.4E-36 2.2E-40 222.1 13.4 162 3-164 15-194 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 2.7E-27 9.3E-32 183.6 7.8 149 11-159 125-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 8.2E-25 2.8E-29 169.9 7.6 115 44-158 127-249 (1134)
5 2xpi_A Anaphase-promoting comp 99.7 2.2E-17 7.4E-22 124.4 9.0 151 11-163 303-459 (597)
6 2xpi_A Anaphase-promoting comp 99.7 2.3E-16 7.8E-21 118.8 12.5 152 10-163 370-534 (597)
7 3mkr_A Coatomer subunit epsilo 99.4 2.1E-11 7.2E-16 84.9 14.7 156 3-163 90-252 (291)
8 1w3b_A UDP-N-acetylglucosamine 99.4 2.2E-11 7.4E-16 87.3 15.1 148 15-164 205-358 (388)
9 2y4t_A DNAJ homolog subfamily 99.3 2.3E-11 8E-16 88.5 13.2 148 13-163 60-229 (450)
10 2y4t_A DNAJ homolog subfamily 99.3 2.5E-11 8.5E-16 88.4 13.1 152 11-164 24-196 (450)
11 1b89_A Protein (clathrin heavy 99.3 1.8E-13 6.3E-18 99.4 1.7 138 14-164 33-196 (449)
12 2q7f_A YRRB protein; TPR, prot 99.3 9.2E-11 3.1E-15 78.5 14.7 152 11-164 55-212 (243)
13 2ho1_A Type 4 fimbrial biogene 99.3 4.8E-11 1.7E-15 80.5 12.7 151 12-163 70-227 (252)
14 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.6E-15 74.2 14.0 150 13-164 8-163 (186)
15 1w3b_A UDP-N-acetylglucosamine 99.3 7E-11 2.4E-15 84.7 13.8 150 10-162 64-220 (388)
16 2vq2_A PILW, putative fimbrial 99.3 6.3E-11 2.2E-15 78.2 11.8 148 13-161 42-198 (225)
17 2pl2_A Hypothetical conserved 99.3 1.4E-10 4.6E-15 77.3 12.8 149 12-164 38-204 (217)
18 2vq2_A PILW, putative fimbrial 99.3 2.4E-10 8.2E-15 75.4 13.6 152 12-164 7-166 (225)
19 3vtx_A MAMA; tetratricopeptide 99.3 2.2E-10 7.4E-15 73.9 13.0 151 12-164 4-160 (184)
20 2ho1_A Type 4 fimbrial biogene 99.2 1.2E-10 3.9E-15 78.6 11.4 151 13-164 37-194 (252)
21 4eqf_A PEX5-related protein; a 99.2 1.4E-10 4.7E-15 82.4 12.2 152 12-164 98-300 (365)
22 2pl2_A Hypothetical conserved 99.2 2.3E-10 7.9E-15 76.1 11.8 153 10-164 2-170 (217)
23 1b89_A Protein (clathrin heavy 99.2 2.9E-11 9.9E-16 88.0 7.2 136 10-164 91-226 (449)
24 3uq3_A Heat shock protein STI1 99.2 1.2E-10 4.1E-15 78.4 9.9 153 11-164 36-226 (258)
25 2fo7_A Synthetic consensus TPR 99.2 9.9E-10 3.4E-14 66.4 12.7 125 15-141 3-130 (136)
26 3mkr_A Coatomer subunit epsilo 99.2 2.1E-10 7.3E-15 79.7 10.4 147 10-164 62-219 (291)
27 1fch_A Peroxisomal targeting s 99.2 8.7E-10 3E-14 78.1 13.7 150 12-162 97-302 (368)
28 2q7f_A YRRB protein; TPR, prot 99.2 1.3E-10 4.6E-15 77.6 8.8 152 11-164 21-178 (243)
29 1fch_A Peroxisomal targeting s 99.2 1.1E-09 3.9E-14 77.5 13.7 120 43-164 216-349 (368)
30 3hym_B Cell division cycle pro 99.2 6.7E-10 2.3E-14 77.3 11.6 121 19-140 165-296 (330)
31 3hym_B Cell division cycle pro 99.1 1E-09 3.4E-14 76.5 12.4 151 12-164 89-255 (330)
32 4gyw_A UDP-N-acetylglucosamine 99.1 2.8E-09 9.5E-14 82.7 14.7 150 12-164 8-164 (723)
33 4eqf_A PEX5-related protein; a 99.1 3.7E-10 1.3E-14 80.2 8.5 146 16-163 180-345 (365)
34 3cv0_A Peroxisome targeting si 99.1 4.6E-09 1.6E-13 73.0 13.7 151 12-163 54-258 (327)
35 2gw1_A Mitochondrial precursor 99.1 5.1E-09 1.8E-13 77.1 14.0 153 11-164 37-289 (514)
36 2fo7_A Synthetic consensus TPR 99.0 2.9E-09 1E-13 64.3 9.9 117 46-164 3-122 (136)
37 3uq3_A Heat shock protein STI1 99.0 1.8E-09 6.2E-14 72.6 9.9 152 13-164 5-192 (258)
38 3as5_A MAMA; tetratricopeptide 99.0 1.5E-08 5.1E-13 64.6 13.6 129 11-141 40-171 (186)
39 3cv0_A Peroxisome targeting si 99.0 1.7E-09 5.9E-14 75.1 9.3 140 23-164 148-305 (327)
40 3ieg_A DNAJ homolog subfamily 99.0 6E-09 2E-13 73.2 12.0 150 12-164 36-207 (359)
41 2gw1_A Mitochondrial precursor 99.0 2.3E-09 7.7E-14 79.1 10.1 151 12-164 236-391 (514)
42 3ieg_A DNAJ homolog subfamily 99.0 5.1E-09 1.7E-13 73.5 11.0 150 12-164 2-173 (359)
43 3u4t_A TPR repeat-containing p 99.0 1.8E-08 6.2E-13 68.4 13.1 137 15-152 5-149 (272)
44 1xnf_A Lipoprotein NLPI; TPR, 99.0 9.4E-09 3.2E-13 69.8 11.7 124 12-138 42-168 (275)
45 3fp2_A TPR repeat-containing p 99.0 7.2E-09 2.4E-13 76.9 11.6 148 15-164 245-397 (537)
46 4abn_A Tetratricopeptide repea 99.0 6.2E-09 2.1E-13 77.1 10.6 150 12-164 101-277 (474)
47 1xnf_A Lipoprotein NLPI; TPR, 98.9 1.9E-08 6.5E-13 68.3 11.7 150 11-164 75-234 (275)
48 2h6f_A Protein farnesyltransfe 98.9 5.3E-08 1.8E-12 70.3 13.8 149 13-163 97-253 (382)
49 2ond_A Cleavage stimulation fa 98.9 2.2E-08 7.5E-13 69.9 10.2 153 9-163 94-259 (308)
50 4abn_A Tetratricopeptide repea 98.9 9.8E-09 3.3E-13 76.0 8.7 150 12-163 136-310 (474)
51 3fp2_A TPR repeat-containing p 98.9 4.4E-08 1.5E-12 72.7 12.0 131 9-141 272-405 (537)
52 4i17_A Hypothetical protein; T 98.9 1.7E-07 5.8E-12 62.3 13.7 147 11-160 5-168 (228)
53 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.8E-07 9.6E-12 60.4 14.4 125 16-141 9-148 (213)
54 3vtx_A MAMA; tetratricopeptide 98.8 3E-07 1E-11 59.0 14.2 129 12-142 38-169 (184)
55 3edt_B KLC 2, kinesin light ch 98.8 2.5E-09 8.6E-14 72.7 4.4 130 12-141 42-196 (283)
56 3nf1_A KLC 1, kinesin light ch 98.8 6.1E-09 2.1E-13 71.8 6.4 130 12-141 68-222 (311)
57 3nf1_A KLC 1, kinesin light ch 98.8 1.1E-08 3.9E-13 70.5 7.0 153 12-164 26-214 (311)
58 3qou_A Protein YBBN; thioredox 98.8 6E-08 2.1E-12 67.1 10.5 153 9-164 113-274 (287)
59 2ond_A Cleavage stimulation fa 98.8 1.9E-07 6.4E-12 65.1 12.5 151 11-164 48-222 (308)
60 1ouv_A Conserved hypothetical 98.8 3.4E-07 1.2E-11 62.4 13.2 139 13-157 38-194 (273)
61 1na0_A Designed protein CTPR3; 98.8 4E-07 1.4E-11 54.0 12.1 93 14-107 10-105 (125)
62 1ouv_A Conserved hypothetical 98.8 9.5E-07 3.2E-11 60.2 15.1 147 12-164 73-241 (273)
63 3u4t_A TPR repeat-containing p 98.8 1.4E-07 4.6E-12 64.1 10.8 151 12-164 36-198 (272)
64 1na0_A Designed protein CTPR3; 98.7 7.4E-07 2.5E-11 52.8 12.8 113 44-158 9-124 (125)
65 4ga2_A E3 SUMO-protein ligase 98.7 2.1E-07 7.1E-12 58.2 10.5 136 22-160 6-149 (150)
66 2vyi_A SGTA protein; chaperone 98.7 6.5E-07 2.2E-11 53.5 12.5 115 45-161 13-130 (131)
67 2r5s_A Uncharacterized protein 98.7 2.2E-07 7.4E-12 59.5 10.7 145 16-164 9-163 (176)
68 3mv2_B Coatomer subunit epsilo 98.7 2.8E-07 9.6E-12 64.4 11.8 128 10-141 97-238 (310)
69 2h6f_A Protein farnesyltransfe 98.7 5.8E-07 2E-11 64.8 12.2 146 12-159 130-288 (382)
70 2vsy_A XCC0866; transferase, g 98.7 2.4E-07 8.2E-12 69.8 10.7 128 12-141 22-155 (568)
71 2vyi_A SGTA protein; chaperone 98.7 1.2E-06 4.1E-11 52.3 11.9 117 12-130 11-130 (131)
72 2lni_A Stress-induced-phosphop 98.6 2.2E-06 7.5E-11 51.5 12.6 96 12-108 15-113 (133)
73 2lni_A Stress-induced-phosphop 98.6 1.4E-06 5E-11 52.3 11.6 117 42-160 14-133 (133)
74 2pzi_A Probable serine/threoni 98.6 7.1E-07 2.4E-11 68.9 12.4 146 11-160 431-583 (681)
75 1a17_A Serine/threonine protei 98.6 1.8E-06 6.2E-11 54.0 12.3 126 13-140 13-143 (166)
76 3qky_A Outer membrane assembly 98.6 6E-07 2.1E-11 60.9 10.6 146 12-158 14-198 (261)
77 4gyw_A UDP-N-acetylglucosamine 98.6 1.9E-06 6.5E-11 67.0 13.8 129 10-141 39-172 (723)
78 2ooe_A Cleavage stimulation fa 98.6 7.5E-07 2.6E-11 66.6 10.7 148 12-162 320-480 (530)
79 3u3w_A Transcriptional activat 98.6 1.8E-06 6.3E-11 59.6 12.0 146 19-164 81-256 (293)
80 4i17_A Hypothetical protein; T 98.5 1.3E-06 4.6E-11 57.9 10.8 121 43-164 6-136 (228)
81 2ooe_A Cleavage stimulation fa 98.5 1.8E-06 6.1E-11 64.6 12.3 151 11-164 270-444 (530)
82 3edt_B KLC 2, kinesin light ch 98.5 1.2E-06 4.2E-11 59.2 9.9 97 12-108 84-198 (283)
83 2vsy_A XCC0866; transferase, g 98.5 5.2E-06 1.8E-10 62.6 13.8 136 26-163 2-146 (568)
84 1qqe_A Vesicular transport pro 98.5 8.1E-07 2.8E-11 61.5 8.7 150 15-164 39-218 (292)
85 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.4E-06 4.7E-11 57.0 9.4 114 46-164 8-140 (213)
86 2pzi_A Probable serine/threoni 98.5 6.6E-07 2.3E-11 69.1 8.9 138 24-164 402-553 (681)
87 2e2e_A Formate-dependent nitri 98.5 1.6E-06 5.6E-11 55.2 9.4 117 23-141 20-142 (177)
88 2yhc_A BAMD, UPF0169 lipoprote 98.5 5.1E-06 1.7E-10 55.2 11.8 148 13-164 4-203 (225)
89 3gw4_A Uncharacterized protein 98.4 5.4E-07 1.9E-11 58.4 6.6 130 12-141 25-174 (203)
90 3ulq_A Response regulator aspa 98.4 1E-06 3.5E-11 63.0 8.4 152 13-164 184-358 (383)
91 1a17_A Serine/threonine protei 98.4 2.2E-06 7.5E-11 53.6 8.9 116 45-162 14-134 (166)
92 3urz_A Uncharacterized protein 98.4 2.6E-06 9.1E-11 56.0 9.6 105 20-126 11-134 (208)
93 1qqe_A Vesicular transport pro 98.4 3.4E-06 1.2E-10 58.3 10.5 129 13-141 77-226 (292)
94 3mv2_B Coatomer subunit epsilo 98.4 5.7E-06 1.9E-10 57.8 11.5 131 32-164 85-230 (310)
95 3gyz_A Chaperone protein IPGC; 98.4 6.4E-06 2.2E-10 51.6 10.8 121 14-141 10-131 (151)
96 1elr_A TPR2A-domain of HOP; HO 98.4 4.7E-06 1.6E-10 49.7 9.5 94 15-108 6-108 (131)
97 1p5q_A FKBP52, FK506-binding p 98.4 4.4E-06 1.5E-10 59.1 10.7 126 13-140 147-291 (336)
98 1xi4_A Clathrin heavy chain; a 98.4 1E-05 3.6E-10 66.4 13.7 135 12-162 1104-1238(1630)
99 4gco_A Protein STI-1; structur 98.4 2E-05 6.8E-10 47.6 11.9 93 47-141 16-108 (126)
100 1elw_A TPR1-domain of HOP; HOP 98.4 2.2E-05 7.7E-10 45.7 12.0 94 46-141 6-99 (118)
101 2vgx_A Chaperone SYCD; alterna 98.3 1.5E-05 5E-10 49.6 10.9 90 17-107 25-117 (148)
102 1elw_A TPR1-domain of HOP; HOP 98.3 3.2E-05 1.1E-09 45.0 11.7 97 12-109 3-102 (118)
103 2qfc_A PLCR protein; TPR, HTH, 98.3 4.3E-06 1.5E-10 57.8 8.8 149 16-164 78-255 (293)
104 2xcb_A PCRH, regulatory protei 98.3 1.8E-05 6.3E-10 48.6 10.9 89 50-140 24-112 (142)
105 2dba_A Smooth muscle cell asso 98.3 5.7E-05 1.9E-09 46.0 13.1 94 13-107 28-127 (148)
106 2fbn_A 70 kDa peptidylprolyl i 98.3 2.2E-06 7.5E-11 55.7 6.8 136 22-158 13-169 (198)
107 2kck_A TPR repeat; tetratricop 98.3 1E-05 3.5E-10 46.9 8.9 93 47-141 9-104 (112)
108 3q15_A PSP28, response regulat 98.3 6.4E-06 2.2E-10 58.9 9.5 152 13-164 182-355 (378)
109 3q49_B STIP1 homology and U bo 98.3 3.3E-05 1.1E-09 46.7 11.5 95 12-107 8-105 (137)
110 3qou_A Protein YBBN; thioredox 98.3 4.6E-05 1.6E-09 52.6 13.5 127 12-139 150-280 (287)
111 4ga2_A E3 SUMO-protein ligase 98.3 3.5E-05 1.2E-09 47.9 11.8 113 14-129 32-149 (150)
112 2dba_A Smooth muscle cell asso 98.3 4.4E-05 1.5E-09 46.5 12.1 109 42-153 26-141 (148)
113 3upv_A Heat shock protein STI1 98.3 3E-05 1E-09 46.4 11.0 89 50-140 10-98 (126)
114 2r5s_A Uncharacterized protein 98.3 4.6E-05 1.6E-09 48.5 12.5 126 12-139 39-169 (176)
115 1p5q_A FKBP52, FK506-binding p 98.3 5E-06 1.7E-10 58.8 8.5 133 27-162 127-281 (336)
116 4gco_A Protein STI-1; structur 98.3 5.4E-05 1.8E-09 45.7 12.0 100 9-109 8-111 (126)
117 2kck_A TPR repeat; tetratricop 98.3 1.5E-05 5E-10 46.2 9.2 97 12-109 5-107 (112)
118 3gyz_A Chaperone protein IPGC; 98.3 2.2E-05 7.4E-10 49.2 10.4 100 9-109 31-134 (151)
119 3sz7_A HSC70 cochaperone (SGT) 98.2 2.9E-05 9.8E-10 48.8 11.0 96 12-108 10-108 (164)
120 3sf4_A G-protein-signaling mod 98.2 7.8E-06 2.7E-10 58.2 9.0 150 13-162 187-364 (406)
121 1xi4_A Clathrin heavy chain; a 98.2 1.1E-05 3.6E-10 66.4 10.3 134 11-162 1132-1267(1630)
122 2ifu_A Gamma-SNAP; membrane fu 98.2 6.3E-06 2.1E-10 57.4 7.9 148 15-163 38-213 (307)
123 4a1s_A PINS, partner of inscut 98.2 1.1E-06 3.9E-11 63.0 4.2 151 14-164 87-282 (411)
124 1elr_A TPR2A-domain of HOP; HO 98.2 3.6E-05 1.2E-09 45.7 10.3 112 45-157 5-124 (131)
125 3q49_B STIP1 homology and U bo 98.2 5.1E-05 1.7E-09 45.8 10.9 98 42-141 7-104 (137)
126 3sf4_A G-protein-signaling mod 98.2 3.1E-06 1.1E-10 60.3 5.9 152 13-164 127-326 (406)
127 2vgx_A Chaperone SYCD; alterna 98.2 4.6E-05 1.6E-09 47.3 10.4 97 43-141 20-116 (148)
128 3ro2_A PINS homolog, G-protein 98.2 3.6E-06 1.2E-10 58.1 5.8 152 13-164 43-242 (338)
129 3qky_A Outer membrane assembly 98.1 3.2E-05 1.1E-09 52.3 10.3 127 13-141 52-222 (261)
130 1wao_1 Serine/threonine protei 98.1 1.7E-05 6E-10 58.7 9.5 117 20-138 13-134 (477)
131 3upv_A Heat shock protein STI1 98.1 0.00012 4.3E-09 43.6 11.8 95 13-108 4-101 (126)
132 3ro2_A PINS homolog, G-protein 98.1 2.7E-06 9.2E-11 58.8 4.8 152 13-164 123-322 (338)
133 3gw4_A Uncharacterized protein 98.1 1.7E-05 5.7E-10 51.2 8.3 141 24-164 3-166 (203)
134 2xcb_A PCRH, regulatory protei 98.1 6.1E-05 2.1E-09 46.2 10.5 95 13-108 18-115 (142)
135 4a1s_A PINS, partner of inscut 98.1 1.7E-06 6E-11 62.0 3.9 149 16-164 51-242 (411)
136 2fbn_A 70 kDa peptidylprolyl i 98.1 6.3E-05 2.2E-09 48.7 11.0 125 14-140 39-183 (198)
137 3urz_A Uncharacterized protein 98.1 5.9E-05 2E-09 49.4 10.9 129 19-151 60-196 (208)
138 4f3v_A ESX-1 secretion system 98.1 4.6E-05 1.6E-09 52.6 10.3 128 16-144 105-240 (282)
139 1hz4_A MALT regulatory protein 98.1 0.00017 5.9E-09 51.1 13.5 149 16-164 96-272 (373)
140 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00014 4.9E-09 45.5 11.8 97 43-141 10-106 (164)
141 3ulq_A Response regulator aspa 98.1 8.4E-05 2.9E-09 53.0 11.7 148 13-160 143-318 (383)
142 1wao_1 Serine/threonine protei 98.1 1.8E-05 6.2E-10 58.7 8.3 109 53-164 15-129 (477)
143 3u3w_A Transcriptional activat 98.1 0.00011 3.7E-09 50.7 11.7 151 9-164 42-215 (293)
144 2xev_A YBGF; tetratricopeptide 98.0 0.00031 1.1E-08 41.7 12.4 84 54-140 12-102 (129)
145 3k9i_A BH0479 protein; putativ 98.0 5.3E-06 1.8E-10 49.3 4.3 82 26-108 3-90 (117)
146 3ro3_A PINS homolog, G-protein 98.0 4.5E-05 1.5E-09 46.9 8.7 128 13-140 9-155 (164)
147 1hxi_A PEX5, peroxisome target 98.0 8.1E-05 2.8E-09 44.5 9.3 87 52-140 25-111 (121)
148 4e6h_A MRNA 3'-END-processing 98.0 0.00015 5E-09 56.2 12.2 151 10-162 375-558 (679)
149 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00022 7.6E-09 49.1 11.9 123 18-140 120-263 (293)
150 2e2e_A Formate-dependent nitri 98.0 0.00034 1.1E-08 44.2 12.0 98 11-109 42-145 (177)
151 2l6j_A TPR repeat-containing p 98.0 6.6E-05 2.2E-09 43.5 7.9 96 43-141 3-105 (111)
152 3q15_A PSP28, response regulat 97.9 0.00011 3.9E-09 52.3 10.4 129 13-141 141-288 (378)
153 4g1t_A Interferon-induced prot 97.9 0.00032 1.1E-08 51.2 12.9 152 12-164 246-449 (472)
154 2xm6_A Protein corresponding t 97.9 0.00025 8.4E-09 52.4 12.3 109 26-140 56-177 (490)
155 2ifu_A Gamma-SNAP; membrane fu 97.9 6.2E-05 2.1E-09 52.4 8.5 128 13-141 76-222 (307)
156 4gcn_A Protein STI-1; structur 97.9 0.00021 7.3E-09 43.0 10.0 88 50-139 14-108 (127)
157 4gcn_A Protein STI-1; structur 97.9 0.00044 1.5E-08 41.6 11.3 103 14-118 9-120 (127)
158 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.9E-05 1.7E-09 56.0 8.0 60 80-140 318-377 (457)
159 2xm6_A Protein corresponding t 97.9 0.00058 2E-08 50.5 13.2 121 14-140 76-213 (490)
160 1ihg_A Cyclophilin 40; ppiase 97.8 0.00027 9.2E-09 50.7 10.9 119 15-135 225-362 (370)
161 3ro3_A PINS homolog, G-protein 97.8 2.5E-05 8.6E-10 48.1 4.9 120 45-164 10-148 (164)
162 2xev_A YBGF; tetratricopeptide 97.8 0.00095 3.2E-08 39.6 11.6 90 18-109 7-106 (129)
163 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00026 8.8E-09 52.2 10.5 126 13-140 268-412 (457)
164 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.00094 3.2E-08 44.1 12.4 124 14-141 42-211 (225)
165 1hz4_A MALT regulatory protein 97.8 0.00035 1.2E-08 49.5 10.6 149 15-163 55-233 (373)
166 3rjv_A Putative SEL1 repeat pr 97.8 0.00092 3.2E-08 43.8 11.9 143 11-157 16-174 (212)
167 2l6j_A TPR repeat-containing p 97.8 0.00014 5E-09 42.0 7.2 85 79-164 4-97 (111)
168 2c2l_A CHIP, carboxy terminus 97.8 0.00039 1.3E-08 47.8 10.4 96 12-108 3-101 (281)
169 1hxi_A PEX5, peroxisome target 97.8 0.00039 1.3E-08 41.5 9.1 91 16-108 20-114 (121)
170 3n71_A Histone lysine methyltr 97.8 0.00016 5.3E-09 53.9 8.7 119 23-141 319-462 (490)
171 3rkv_A Putative peptidylprolyl 97.7 0.00065 2.2E-08 42.3 10.2 93 15-108 13-126 (162)
172 2c2l_A CHIP, carboxy terminus 97.7 0.0007 2.4E-08 46.5 10.7 62 12-73 37-101 (281)
173 3k9i_A BH0479 protein; putativ 97.7 0.00031 1.1E-08 41.4 7.8 101 56-157 2-109 (117)
174 4g1t_A Interferon-induced prot 97.6 0.0024 8.1E-08 46.5 13.5 128 12-140 50-201 (472)
175 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00023 7.8E-09 50.3 7.8 125 14-141 180-326 (338)
176 1ihg_A Cyclophilin 40; ppiase 97.6 0.00012 4E-09 52.6 6.0 115 45-160 224-356 (370)
177 3rkv_A Putative peptidylprolyl 97.5 0.0027 9.1E-08 39.5 11.0 94 47-141 14-124 (162)
178 1na3_A Designed protein CTPR2; 97.5 0.0028 9.7E-08 34.9 10.3 78 45-124 10-87 (91)
179 3rjv_A Putative SEL1 repeat pr 97.4 0.0061 2.1E-07 39.8 12.2 127 12-141 49-195 (212)
180 2kat_A Uncharacterized protein 97.4 0.0013 4.3E-08 38.5 7.9 64 43-107 18-81 (115)
181 2if4_A ATFKBP42; FKBP-like, al 97.4 0.0013 4.4E-08 46.5 8.9 94 45-141 180-291 (338)
182 4b4t_Q 26S proteasome regulato 97.4 0.0011 3.7E-08 47.8 8.5 127 15-141 57-202 (434)
183 3ma5_A Tetratricopeptide repea 97.4 0.0011 3.7E-08 38.0 6.9 84 43-127 6-90 (100)
184 1na3_A Designed protein CTPR2; 97.3 0.0025 8.5E-08 35.1 8.0 80 79-159 9-91 (91)
185 4e6h_A MRNA 3'-END-processing 97.3 0.0022 7.4E-08 49.7 9.6 150 11-162 341-521 (679)
186 2hr2_A Hypothetical protein; a 97.3 0.0069 2.4E-07 38.1 10.2 93 47-141 14-129 (159)
187 3ma5_A Tetratricopeptide repea 97.2 0.0055 1.9E-07 34.9 8.6 60 12-71 6-68 (100)
188 2kat_A Uncharacterized protein 97.1 0.0038 1.3E-07 36.3 7.6 78 62-141 3-80 (115)
189 3dra_A Protein farnesyltransfe 97.1 0.032 1.1E-06 39.0 13.2 136 27-164 124-277 (306)
190 4b4t_Q 26S proteasome regulato 97.1 0.00064 2.2E-08 49.0 4.8 144 21-164 12-194 (434)
191 3qww_A SET and MYND domain-con 97.0 0.0032 1.1E-07 46.2 7.6 62 45-106 341-409 (433)
192 3n71_A Histone lysine methyltr 96.9 0.0074 2.5E-07 45.0 9.4 89 53-141 318-420 (490)
193 4f3v_A ESX-1 secretion system 96.9 0.04 1.4E-06 38.0 11.9 109 11-121 133-248 (282)
194 3e4b_A ALGK; tetratricopeptide 96.8 0.0098 3.3E-07 43.7 9.3 135 15-157 178-330 (452)
195 3qww_A SET and MYND domain-con 96.8 0.0085 2.9E-07 43.9 8.9 86 56-141 310-409 (433)
196 3e4b_A ALGK; tetratricopeptide 96.8 0.087 3E-06 38.6 15.0 29 46-74 178-209 (452)
197 2hr2_A Hypothetical protein; a 96.8 0.008 2.8E-07 37.8 7.4 94 15-108 13-131 (159)
198 3qwp_A SET and MYND domain-con 96.8 0.013 4.3E-07 43.0 9.4 92 50-141 293-398 (429)
199 3mkq_A Coatomer beta'-subunit; 96.7 0.04 1.4E-06 42.9 12.3 100 26-142 665-764 (814)
200 3qwp_A SET and MYND domain-con 96.7 0.013 4.5E-07 42.9 9.0 89 19-107 293-399 (429)
201 2kc7_A BFR218_protein; tetratr 96.7 0.019 6.5E-07 32.1 7.9 57 52-109 8-65 (99)
202 1zu2_A Mitochondrial import re 96.3 0.017 5.9E-07 36.2 6.6 93 25-121 14-131 (158)
203 1klx_A Cysteine rich protein B 96.3 0.019 6.6E-07 34.8 6.8 107 27-141 9-124 (138)
204 2uy1_A Cleavage stimulation fa 96.0 0.17 5.7E-06 37.7 11.5 103 47-153 289-392 (493)
205 2kc7_A BFR218_protein; tetratr 96.0 0.078 2.7E-06 29.5 7.8 56 85-141 6-62 (99)
206 1dce_A Protein (RAB geranylger 95.9 0.13 4.6E-06 39.0 10.9 149 13-163 63-244 (567)
207 3ly7_A Transcriptional activat 95.8 0.19 6.6E-06 36.0 10.7 142 6-149 187-347 (372)
208 3dra_A Protein farnesyltransfe 95.7 0.31 1E-05 34.0 13.9 145 15-161 69-236 (306)
209 3q7a_A Farnesyltransferase alp 95.7 0.36 1.2E-05 34.3 12.2 100 28-129 140-257 (349)
210 3mkq_B Coatomer subunit alpha; 95.6 0.24 8E-06 31.7 10.9 104 20-140 12-115 (177)
211 1pc2_A Mitochondria fission pr 95.6 0.12 4E-06 32.2 7.9 78 62-141 16-98 (152)
212 3lvg_A Clathrin heavy chain 1; 95.5 0.00086 2.9E-08 49.8 -2.1 141 13-164 54-218 (624)
213 1zu2_A Mitochondrial import re 95.5 0.054 1.8E-06 34.0 6.2 98 55-154 13-133 (158)
214 2uy1_A Cleavage stimulation fa 95.4 0.22 7.6E-06 37.1 10.4 120 14-141 287-411 (493)
215 2v5f_A Prolyl 4-hydroxylase su 95.3 0.12 4E-06 29.6 6.9 63 79-141 5-73 (104)
216 3bee_A Putative YFRE protein; 95.0 0.17 5.9E-06 28.4 6.9 64 43-108 5-72 (93)
217 2ff4_A Probable regulatory pro 94.8 0.26 8.9E-06 35.5 9.1 72 48-120 175-251 (388)
218 3q7a_A Farnesyltransferase alp 94.5 0.88 3E-05 32.4 13.4 146 13-160 88-257 (349)
219 1dce_A Protein (RAB geranylger 94.5 1.2 4.1E-05 33.8 15.9 132 25-158 41-191 (567)
220 1v54_E Cytochrome C oxidase po 94.3 0.12 4E-06 29.8 4.9 64 59-123 25-88 (109)
221 3ly7_A Transcriptional activat 94.1 0.47 1.6E-05 34.1 8.8 74 41-118 274-347 (372)
222 4gns_B Protein CSD3, chitin bi 94.0 1.5 5.1E-05 34.6 11.9 125 15-141 250-398 (754)
223 3mkq_A Coatomer beta'-subunit; 93.8 0.52 1.8E-05 36.7 9.4 83 11-104 679-761 (814)
224 1klx_A Cysteine rich protein B 93.8 0.6 2.1E-05 28.0 10.3 89 19-110 31-128 (138)
225 3dss_A Geranylgeranyl transfer 93.5 1.4 4.7E-05 31.1 13.0 136 11-149 106-274 (331)
226 1v54_E Cytochrome C oxidase po 93.2 0.67 2.3E-05 26.7 8.9 57 97-153 28-87 (109)
227 2ff4_A Probable regulatory pro 93.2 0.33 1.1E-05 35.0 6.8 66 16-81 174-247 (388)
228 4gns_B Protein CSD3, chitin bi 93.0 0.17 5.8E-06 39.8 5.4 116 47-164 251-390 (754)
229 1wy6_A Hypothetical protein ST 92.8 1 3.5E-05 27.7 9.4 129 14-143 6-154 (172)
230 1wy6_A Hypothetical protein ST 92.5 1.1 3.9E-05 27.5 9.1 83 26-110 74-156 (172)
231 3bee_A Putative YFRE protein; 92.5 0.78 2.7E-05 25.6 9.5 77 10-88 3-85 (93)
232 2y69_E Cytochrome C oxidase su 92.4 0.32 1.1E-05 29.6 4.9 63 59-122 68-130 (152)
233 3mkq_B Coatomer subunit alpha; 92.3 1.4 4.7E-05 28.1 9.7 111 11-141 32-142 (177)
234 3u64_A Protein TP_0956; tetrat 92.3 2 6.8E-05 29.9 9.6 92 29-122 179-285 (301)
235 4fhn_B Nucleoporin NUP120; pro 92.2 3.1 0.0001 34.5 11.9 142 18-161 817-987 (1139)
236 2y69_E Cytochrome C oxidase su 91.5 1.5 5.1E-05 26.8 8.9 59 96-154 70-131 (152)
237 2v5f_A Prolyl 4-hydroxylase su 91.2 1.2 4.1E-05 25.2 9.2 62 47-108 8-75 (104)
238 1nzn_A CGI-135 protein, fissio 89.4 1.5 5.2E-05 26.2 5.9 77 63-141 20-101 (126)
239 3dss_A Geranylgeranyl transfer 87.2 6.1 0.00021 27.9 12.0 123 29-153 90-235 (331)
240 2ion_A PDCD4, programmed cell 86.7 4 0.00014 25.2 7.1 67 15-81 11-82 (152)
241 2uwj_G Type III export protein 86.6 3.1 0.00011 23.9 6.3 57 95-153 22-78 (115)
242 2p58_C Putative type III secre 86.3 3.3 0.00011 23.9 6.8 57 95-153 23-79 (116)
243 1pc2_A Mitochondria fission pr 86.1 4.4 0.00015 25.1 7.8 69 42-113 30-103 (152)
244 2uwj_G Type III export protein 86.0 3.4 0.00012 23.8 6.4 53 20-74 46-98 (115)
245 4b4t_R RPN7, 26S proteasome re 85.8 8.4 0.00029 28.1 10.9 93 15-108 133-237 (429)
246 2p58_C Putative type III secre 85.2 3.8 0.00013 23.6 6.7 52 21-74 48-99 (116)
247 2nsz_A Programmed cell death p 84.2 4.9 0.00017 24.0 8.4 65 16-80 10-79 (129)
248 3u64_A Protein TP_0956; tetrat 83.9 7.3 0.00025 27.1 7.6 109 31-141 139-267 (301)
249 4b4t_R RPN7, 26S proteasome re 83.5 8.4 0.00029 28.1 8.3 95 46-140 133-234 (429)
250 3lpz_A GET4 (YOR164C homolog); 82.8 10 0.00036 26.8 12.7 132 15-157 37-179 (336)
251 2d2s_A Exocyst complex compone 82.4 8.7 0.0003 25.6 8.4 89 49-140 23-117 (235)
252 4h7y_A Dual specificity protei 82.2 7 0.00024 24.4 8.9 101 12-113 12-128 (161)
253 3ltj_A Alpharep-4; protein eng 81.4 7.9 0.00027 24.4 15.1 139 11-157 26-164 (201)
254 2fe3_A Peroxide operon regulat 80.9 7.2 0.00025 23.7 7.0 63 68-131 11-73 (145)
255 1mzb_A Ferric uptake regulatio 80.4 7.2 0.00025 23.4 6.6 62 69-131 8-70 (136)
256 2nsz_A Programmed cell death p 80.1 4.2 0.00014 24.3 4.8 68 46-114 9-78 (129)
257 4ets_A Ferric uptake regulatio 79.9 8.6 0.00029 23.9 7.3 72 60-132 13-87 (162)
258 3eyy_A Putative iron uptake re 79.8 7.1 0.00024 23.7 5.9 62 68-131 8-69 (145)
259 2xig_A Ferric uptake regulatio 79.6 8.3 0.00029 23.6 7.3 64 67-131 15-78 (150)
260 2w57_A Ferric uptake regulatio 79.4 8.5 0.00029 23.5 6.8 64 68-132 6-70 (150)
261 2b7e_A PRE-mRNA processing pro 77.4 4.7 0.00016 20.6 3.7 36 60-95 2-38 (59)
262 3l6a_A Eukaryotic translation 77.1 9.3 0.00032 27.3 6.6 69 15-83 14-87 (364)
263 3ffl_A Anaphase-promoting comp 76.9 11 0.00039 23.7 9.1 27 116-142 124-150 (167)
264 2ion_A PDCD4, programmed cell 75.6 3.3 0.00011 25.6 3.5 68 46-114 11-80 (152)
265 1nzn_A CGI-135 protein, fissio 75.1 11 0.00037 22.5 5.6 66 42-108 33-103 (126)
266 2fu4_A Ferric uptake regulatio 74.9 7.7 0.00026 20.7 6.6 63 68-131 6-69 (83)
267 2wpv_A GET4, UPF0363 protein Y 74.8 19 0.00065 25.2 11.5 86 53-138 62-158 (312)
268 3eiq_C Programmed cell death p 73.4 22 0.00076 25.4 7.8 64 16-79 220-288 (358)
269 2zu6_B Programmed cell death p 73.1 21 0.00071 24.9 7.8 65 16-80 169-238 (307)
270 3lvg_A Clathrin heavy chain 1; 72.6 0.81 2.8E-05 34.5 0.2 114 43-164 198-323 (624)
271 4h7y_A Dual specificity protei 72.2 15 0.00052 22.9 11.2 113 42-156 11-139 (161)
272 3ltm_A Alpha-REP4; protein eng 71.7 16 0.00056 23.1 15.4 139 10-156 30-168 (211)
273 1zbp_A Hypothetical protein VP 70.6 8.9 0.0003 26.3 4.9 71 52-123 5-77 (273)
274 4fhn_B Nucleoporin NUP120; pro 69.3 49 0.0017 27.6 15.0 112 22-135 851-992 (1139)
275 3o48_A Mitochondria fission 1 68.3 17 0.00058 22.0 7.1 56 86-141 47-105 (134)
276 3qye_A TBC1 domain family memb 68.2 23 0.0008 24.6 6.9 74 66-139 210-287 (331)
277 3twr_A Tankyrase-2; ankyrin re 67.8 17 0.00058 21.8 5.9 113 18-139 10-130 (165)
278 3kea_A K1L; tropism, ANK repea 65.9 15 0.00053 24.7 5.5 18 20-37 66-83 (285)
279 3mwm_A ZUR, putative metal upt 65.6 16 0.00053 22.0 4.9 60 71-131 6-65 (139)
280 2o03_A Probable zinc uptake re 65.1 18 0.00062 21.4 5.1 48 84-131 15-62 (131)
281 3esl_A Checkpoint serine/threo 64.0 27 0.00093 22.7 10.4 69 46-115 82-151 (202)
282 3ltj_A Alpharep-4; protein eng 63.9 24 0.00082 22.1 13.1 141 10-159 56-197 (201)
283 3txn_A 26S proteasome regulato 63.9 39 0.0013 24.5 8.4 92 49-140 104-207 (394)
284 1jog_A Hypothetical protein HI 63.3 23 0.00078 21.6 5.7 50 60-109 54-107 (146)
285 2r9g_A AAA ATPase, central reg 63.0 28 0.00097 22.6 8.7 65 50-115 17-89 (204)
286 1y8m_A FIS1; mitochondria, unk 62.6 24 0.00082 21.6 8.4 56 86-141 46-104 (144)
287 1y8m_A FIS1; mitochondria, unk 62.4 14 0.00049 22.6 4.2 59 53-113 48-109 (144)
288 2rg8_A Programmed cell death p 62.0 8.4 0.00029 24.1 3.3 27 46-72 12-38 (165)
289 3bge_A Predicted ATPase; struc 61.6 30 0.001 22.5 7.1 61 50-110 10-78 (201)
290 4b4t_P 26S proteasome regulato 60.8 46 0.0016 24.4 11.2 131 9-141 52-204 (445)
291 2p1h_A APAF-1, apoptotic prote 60.3 19 0.00066 19.8 4.6 28 130-157 52-79 (94)
292 3ltm_A Alpha-REP4; protein eng 59.9 30 0.001 21.8 12.7 141 10-159 61-202 (211)
293 2yru_A Steroid receptor RNA ac 57.9 14 0.00048 21.8 3.5 43 66-108 48-90 (118)
294 1ug3_A EIF4GI, eukaryotic prot 57.7 46 0.0016 23.4 8.4 120 16-139 14-166 (339)
295 3ygs_P Procaspase 9; apoptosis 57.5 19 0.00064 20.2 4.0 34 28-61 52-85 (97)
296 3o48_A Mitochondria fission 1 57.0 10 0.00036 22.9 2.9 59 53-113 49-110 (134)
297 3txn_A 26S proteasome regulato 56.4 54 0.0018 23.7 11.3 127 14-141 20-166 (394)
298 3kea_A K1L; tropism, ANK repea 56.3 33 0.0011 23.0 5.8 115 19-141 34-153 (285)
299 2wvi_A Mitotic checkpoint seri 54.5 37 0.0013 21.3 9.4 85 30-117 47-134 (164)
300 3hra_A Ankyrin repeat family p 54.2 17 0.00059 22.5 3.9 48 19-67 42-92 (201)
301 3ctd_A Putative ATPase, AAA fa 53.8 44 0.0015 21.9 8.5 67 48-114 36-110 (213)
302 1zbp_A Hypothetical protein VP 53.5 51 0.0017 22.6 7.5 108 21-140 5-126 (273)
303 2qq8_A TBC1 domain family memb 53.3 23 0.00079 24.8 4.7 76 67-142 216-294 (334)
304 3eiq_C Programmed cell death p 53.1 16 0.00055 26.1 3.8 73 82-155 220-294 (358)
305 2wpv_A GET4, UPF0363 protein Y 52.9 56 0.0019 22.8 6.8 67 46-127 35-105 (312)
306 3m0z_A Putative aldolase; MCSG 52.2 31 0.001 23.0 4.7 79 29-107 147-246 (249)
307 4b4t_P 26S proteasome regulato 51.0 70 0.0024 23.4 9.5 95 46-140 139-244 (445)
308 3ffl_A Anaphase-promoting comp 50.6 44 0.0015 21.0 6.4 100 6-106 11-149 (167)
309 3aji_A 26S proteasome non-ATPa 49.9 33 0.0011 21.7 4.9 18 20-37 10-27 (231)
310 1ug3_A EIF4GI, eukaryotic prot 48.9 4 0.00014 28.8 0.2 66 46-112 13-79 (339)
311 2zu6_B Programmed cell death p 48.7 17 0.00059 25.3 3.4 24 83-106 170-193 (307)
312 3esl_A Checkpoint serine/threo 47.6 56 0.0019 21.3 6.6 62 92-153 92-154 (202)
313 3m6y_A 4-hydroxy-2-oxoglutarat 47.0 33 0.0011 23.2 4.2 79 29-107 170-269 (275)
314 4b4t_S RPN3, 26S proteasome re 46.8 92 0.0032 23.6 8.5 60 45-107 232-298 (523)
315 1dp3_A TRAM protein; helix-loo 46.5 23 0.00077 17.7 2.6 34 60-93 12-45 (55)
316 2qfz_A TBC1 domain family memb 44.8 44 0.0015 23.4 5.1 75 69-143 234-315 (345)
317 2d2s_A Exocyst complex compone 44.7 66 0.0023 21.3 6.1 85 19-106 24-118 (235)
318 2keb_A DNA polymerase subunit 44.7 42 0.0014 19.1 4.8 31 63-93 28-58 (101)
319 1q02_A Sequestosome 1; helical 43.7 30 0.001 17.0 3.1 35 2-38 15-49 (52)
320 2cos_A Serine/threonine protei 42.8 32 0.0011 17.1 3.1 42 98-144 9-52 (54)
321 1q2z_A ATP-dependent DNA helic 42.6 15 0.00053 21.6 2.1 53 59-111 42-95 (120)
322 3f3f_C Nucleoporin NUP85; stru 42.0 31 0.0011 26.4 4.0 66 97-163 499-567 (570)
323 2o03_A Probable zinc uptake re 41.1 54 0.0018 19.3 4.5 44 50-93 16-59 (131)
324 1rw2_A ATP-dependent DNA helic 40.9 20 0.00068 22.2 2.4 53 59-111 73-126 (152)
325 4a1g_A Mitotic checkpoint seri 40.4 64 0.0022 19.9 9.8 55 61-115 82-137 (152)
326 2wvi_A Mitotic checkpoint seri 39.7 68 0.0023 20.0 5.5 56 96-151 77-133 (164)
327 2dod_A Transcription elongatio 39.6 46 0.0016 18.1 4.3 37 59-96 15-52 (82)
328 3mwm_A ZUR, putative metal upt 39.6 50 0.0017 19.7 4.1 20 20-39 20-39 (139)
329 3bqo_A Telomeric repeat-bindin 39.4 57 0.0019 21.3 4.4 44 29-72 94-145 (211)
330 1k1a_A B-cell lymphoma 3-encod 39.4 72 0.0025 20.2 6.3 118 19-141 12-140 (241)
331 2i2x_B MTAC, methyltransferase 39.0 6.6 0.00023 26.5 0.1 38 90-127 47-84 (258)
332 4aez_C MAD3, mitotic spindle c 38.9 71 0.0024 21.2 4.9 43 97-139 132-175 (223)
333 4aez_C MAD3, mitotic spindle c 38.6 84 0.0029 20.8 9.5 55 61-115 131-186 (223)
334 3hzj_A Rabgap1L, RAB GTPase-ac 37.8 68 0.0023 22.0 5.1 44 67-110 177-220 (310)
335 1mzb_A Ferric uptake regulatio 37.6 63 0.0021 19.1 4.3 35 4-39 9-44 (136)
336 2fe3_A Peroxide operon regulat 37.1 68 0.0023 19.2 5.4 37 56-92 33-69 (145)
337 3eu9_A Huntingtin-interacting 37.1 77 0.0026 19.9 5.5 20 20-39 46-65 (240)
338 3ljn_A Hypothetical protein; a 36.8 24 0.00081 24.5 2.7 19 20-38 24-42 (364)
339 2rg8_A Programmed cell death p 36.6 55 0.0019 20.4 4.0 55 16-70 13-71 (165)
340 2aja_A Ankyrin repeat family p 35.7 1.2E+02 0.004 21.6 8.3 111 18-138 94-220 (376)
341 3f6q_A Integrin-linked protein 35.6 73 0.0025 19.2 6.2 111 20-139 9-127 (179)
342 1bpo_A Protein (clathrin); cla 35.2 1.4E+02 0.0049 22.4 9.1 16 126-141 468-483 (494)
343 1uzc_A Hypothetical protein FL 35.1 52 0.0018 17.3 4.4 37 59-96 13-50 (71)
344 2p22_A Suppressor protein STP2 35.1 86 0.0029 19.9 5.2 51 76-127 108-158 (174)
345 3v30_A DNA-binding protein rfx 34.8 71 0.0024 19.0 4.4 111 20-139 6-124 (172)
346 3qil_A Clathrin heavy chain 1; 34.8 54 0.0019 19.5 3.5 50 16-65 35-85 (125)
347 3f3f_C Nucleoporin NUP85; stru 34.7 1.2E+02 0.0042 23.2 6.2 51 81-133 518-568 (570)
348 1wdy_A 2-5A-dependent ribonucl 34.5 94 0.0032 20.1 6.9 115 17-140 6-128 (285)
349 2ko4_A Mediator of RNA polymer 34.2 58 0.002 17.6 3.8 31 74-104 31-61 (81)
350 1fkm_A Protein (GYP1P), ORF YO 32.5 55 0.0019 23.6 4.0 44 66-109 218-261 (396)
351 3utm_A Tankyrase-1; tankyrase, 32.3 1.2E+02 0.004 20.5 6.2 114 18-140 26-147 (351)
352 2f8y_A Notch homolog 1, transl 31.8 64 0.0022 20.2 4.0 19 20-38 29-47 (223)
353 2jab_A H10-2-G3; HER2, darpin, 31.3 76 0.0026 18.1 5.5 111 15-134 13-130 (136)
354 1oai_A Nuclear RNA export fact 31.2 55 0.0019 16.5 2.9 24 56-79 32-56 (59)
355 2bwb_A Ubiquitin-like protein 30.8 48 0.0016 15.6 3.0 9 27-35 34-42 (46)
356 1wty_A Hypothetical protein TT 30.5 81 0.0028 18.2 4.7 59 43-106 20-79 (119)
357 2ijq_A Hypothetical protein; s 30.5 1E+02 0.0034 19.2 6.8 60 47-107 36-103 (161)
358 1oy3_D Transcription factor in 30.4 60 0.002 21.2 3.8 17 21-37 83-99 (282)
359 3ezx_A MMCP 1, monomethylamine 30.3 25 0.00085 23.0 1.8 41 54-94 12-52 (215)
360 2rfa_A Transient receptor pote 29.4 87 0.003 19.8 4.3 25 86-110 158-182 (232)
361 4g8k_A 2-5A-dependent ribonucl 29.1 1.4E+02 0.0046 20.3 6.8 76 53-139 245-323 (337)
362 3v31_A Ankyrin repeat family A 29.0 93 0.0032 18.4 5.4 110 20-138 7-123 (167)
363 1wgl_A TOLL-interacting protei 28.8 43 0.0015 16.9 2.1 24 55-78 34-57 (59)
364 4b93_B Ankyrin repeat domain-c 28.8 79 0.0027 21.0 4.1 109 20-138 90-206 (269)
365 1awc_B Protein (GA binding pro 28.7 91 0.0031 18.1 5.1 113 18-139 4-122 (153)
366 3t8k_A Uncharacterized protein 28.5 1.1E+02 0.0037 19.0 8.2 92 21-113 11-108 (186)
367 3l6a_A Eukaryotic translation 27.3 1.1E+02 0.0036 21.9 4.7 64 46-113 14-82 (364)
368 2dna_A Unnamed protein product 27.1 65 0.0022 16.8 2.7 10 58-67 46-55 (67)
369 2w57_A Ferric uptake regulatio 27.1 85 0.0029 19.0 3.7 57 4-61 8-69 (150)
370 3cqc_A Nuclear pore complex pr 27.0 41 0.0014 22.9 2.4 27 116-142 36-62 (270)
371 4gpm_A Engineered protein OR26 27.0 1.1E+02 0.0038 18.6 5.7 108 19-138 8-124 (169)
372 2es9_A Putative cytoplasmic pr 26.7 71 0.0024 17.9 2.9 52 60-111 13-67 (115)
373 3ljn_A Hypothetical protein; a 26.6 1.6E+02 0.0054 20.2 5.6 14 91-104 93-106 (364)
374 1bd8_A P19INK4D CDK4/6 inhibit 26.3 75 0.0026 18.5 3.4 110 18-139 4-123 (156)
375 4gq2_M Nucleoporin NUP120; bet 25.7 2.8E+02 0.0094 22.7 11.7 127 19-159 816-950 (950)
376 2f6m_A Suppressor protein STP2 25.7 78 0.0027 16.4 5.5 42 83-125 6-47 (65)
377 2vge_A RELA-associated inhibit 25.6 1.4E+02 0.0047 19.2 5.0 100 3-112 3-113 (229)
378 1zl8_A LIN-7; heterodimer, alp 25.2 40 0.0014 16.5 1.5 22 93-114 7-28 (53)
379 1wr1_B Ubiquitin-like protein 25.0 74 0.0025 15.9 3.0 8 58-65 44-51 (58)
380 3u5c_N S27A, YS15, 40S ribosom 24.6 1.3E+02 0.0043 18.6 3.9 63 60-124 30-96 (151)
381 2bn5_A PSI; nuclear protein, s 24.6 55 0.0019 14.3 2.3 22 85-106 8-29 (33)
382 4ets_A Ferric uptake regulatio 24.5 1.3E+02 0.0044 18.5 4.8 47 48-94 36-84 (162)
383 1ixm_A SPO0B, protein (sporula 24.4 80 0.0027 20.2 3.3 46 83-128 36-88 (192)
384 1oxz_A ADP-ribosylation factor 24.4 1.4E+02 0.0049 19.0 4.7 56 18-73 36-94 (186)
385 1naf_A ADP-ribosylation factor 24.2 1.3E+02 0.0046 18.6 5.0 74 18-91 20-102 (158)
386 2etb_A Transient receptor pote 24.1 1.4E+02 0.0047 19.2 4.6 87 51-139 6-112 (256)
387 2y1l_E Darpin-8.4; hydrolase-i 23.5 1.2E+02 0.0042 17.9 5.6 113 18-139 16-135 (169)
388 3t5v_B Nuclear mRNA export pro 23.4 2.3E+02 0.0078 21.0 6.1 62 46-107 178-248 (455)
389 2cwb_A Chimera of immunoglobul 22.9 82 0.0028 18.2 2.8 39 27-68 64-103 (108)
390 1wwp_A Hypothetical protein TT 22.0 1.2E+02 0.0042 17.4 5.4 45 60-106 34-81 (119)
391 3jxi_A Vanilloid receptor-rela 21.9 1.7E+02 0.0057 18.8 5.7 88 51-139 9-115 (260)
392 1vej_A Riken cDNA 4931431F19; 21.6 1E+02 0.0035 16.3 3.3 9 58-66 56-64 (74)
393 1ihb_A P18-INK4C(INK6), cyclin 21.5 79 0.0027 18.5 2.8 114 16-139 5-125 (162)
394 3kae_A CDC27, possible protein 21.4 1.7E+02 0.0059 18.8 5.7 50 89-138 72-138 (242)
395 2xig_A Ferric uptake regulatio 21.3 1.4E+02 0.0049 17.9 6.2 47 47-93 29-75 (150)
396 4hbd_A KN motif and ankyrin re 21.0 1.9E+02 0.0064 19.1 4.9 114 20-138 115-237 (276)
397 3t5v_B Nuclear mRNA export pro 20.6 1.5E+02 0.005 22.0 4.4 79 59-137 141-243 (455)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-36 Score=223.62 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=150.9
Q ss_pred ChhHhhhcCCCCHHHHHHHHHHHhccCC---------cHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHH
Q 031208 1 MQKIIRYGLSNDQLLVRKLLDLCSFYGK---------TDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLY 67 (164)
Q Consensus 1 ~~~m~~~g~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~ 67 (164)
|++|.+.|++||..+||+||.+|++.+. ++.|.++|++|. .||..|||++|.+|++.|++++|.++|
T Consensus 49 f~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 49 YDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128 (501)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4689999999999999999999998765 678999999997 599999999999999999999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC----CC
Q 031208 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR----VR 143 (164)
Q Consensus 68 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~ 143 (164)
++|.+.|+.||..||+++|.+|++.|+.++|.++|++|.+.|+.||..+|++||++|++.|++++|.++|++|. .|
T Consensus 129 ~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 78
Q ss_pred CcchHHHHHHHHHhc
Q 031208 144 SVVSWTTMISGLAAS 158 (164)
Q Consensus 144 ~~~~~~~li~~~~~~ 158 (164)
+..||+.++..|...
T Consensus 209 s~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 209 SKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.4e-36 Score=222.11 Aligned_cols=162 Identities=15% Similarity=0.214 Sum_probs=145.1
Q ss_pred hHhhhcCCCCH-HHHHHHHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCC---------hhHHHHHHH
Q 031208 3 KIIRYGLSNDQ-LLVRKLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGS---------SLQALLLYN 68 (164)
Q Consensus 3 ~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~---------~~~a~~~~~ 68 (164)
++.+.+..+++ .+++.+|++|++.|++++|.++|++|. .||..+||+||.+|++.+. .+.|.++|+
T Consensus 15 ~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 15 KAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp ---------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 45666766554 468999999999999999999999997 6999999999999998765 688999999
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC----CCC
Q 031208 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR----VRS 144 (164)
Q Consensus 69 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~ 144 (164)
+|...|+.||..||+++|++|++.|++++|.+++++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 689
Q ss_pred cchHHHHHHHHHhcCCCCCC
Q 031208 145 VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A 164 (164)
..||++||.+|++.|++++|
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHH
Confidence 99999999999999998764
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.7e-27 Score=183.58 Aligned_cols=149 Identities=9% Similarity=0.079 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC-------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR-------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
--..+||++|++||+.|++++|.++|+.|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 346789999999999999999999997764 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccch-hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC-----CcchHHHHHHHHHh
Q 031208 84 FVIKACIASLAI-EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR-----SVVSWTTMISGLAA 157 (164)
Q Consensus 84 ~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~ 157 (164)
++|+++++.|+. ++|.+++++|.+.|+.||..+|++++.++.+.+-++.+.+++.++..+ .+.+...|.+-|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999999999888777777777666522 23344445555555
Q ss_pred cC
Q 031208 158 SG 159 (164)
Q Consensus 158 ~g 159 (164)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=8.2e-25 Score=169.88 Aligned_cols=115 Identities=9% Similarity=-0.040 Sum_probs=106.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHH---HcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHH
Q 031208 44 VFTWNLMIRALTIDGSSLQALLLYNLMI---CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120 (164)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 120 (164)
..|||++|++|++.|++++|.++|.+|. ..|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999998875 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc-hhHHHHhcccC----CCCcchHHHHHHHHHhc
Q 031208 121 MDLYLKCGDV-DGGRKMFDKMR----VRSVVSWTTMISGLAAS 158 (164)
Q Consensus 121 l~~~~~~~~~-~~a~~~~~~m~----~~~~~~~~~li~~~~~~ 158 (164)
|+++++.|+. ++|.++|++|. .||.++|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999985 78999999997 78999999877766554
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.72 E-value=2.2e-17 Score=124.38 Aligned_cols=151 Identities=10% Similarity=0.010 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
++..+|+.+..+|.+.|++++|.++|+++. ..+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..+..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 445555555555555555555555555443 1234445555555555555555555555554321 234445555556
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 163 (164)
.|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++. ..+..+|+.+..+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666555432 2334556666666666666666666665543 2245566666666666665544
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.70 E-value=2.3e-16 Score=118.81 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
+.+..+|+.+..+|.+.|++++|.++|+++. ..+..+|+.+..+|.+.|++++|.++|+++.+.+ +.+..+|..+.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 3456677777777777777777777777654 2345677777777777777777777777776542 33556666666
Q ss_pred HHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--------CCC--cchHHHHHHHHH
Q 031208 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--------VRS--VVSWTTMISGLA 156 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--------~~~--~~~~~~li~~~~ 156 (164)
.+|.+.|++++|.++++++.+.. +.+..+|+.+...|.+.|++++|.++|+++. .|+ ..+|..+..+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 66666666666666666666543 3355666666666666666666666666653 233 456666666666
Q ss_pred hcCCCCC
Q 031208 157 ASGDLDA 163 (164)
Q Consensus 157 ~~g~~~~ 163 (164)
+.|++++
T Consensus 528 ~~g~~~~ 534 (597)
T 2xpi_A 528 KLKMYDA 534 (597)
T ss_dssp HTTCHHH
T ss_pred HhcCHHH
Confidence 6666554
No 7
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=2.1e-11 Score=84.86 Aligned_cols=156 Identities=7% Similarity=-0.026 Sum_probs=123.3
Q ss_pred hHhhhcCCCC-HHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc
Q 031208 3 KIIRYGLSND-QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 3 ~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 81 (164)
++...+..|+ ...+..+-..+...|++++|.+.+++ ..+...+..+...+.+.|++++|...|+++.+.. |+...
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~ 165 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATL 165 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHH
Confidence 3444455564 44555555788999999999999998 5677889999999999999999999999998764 66431
Q ss_pred H---HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHH
Q 031208 82 F---PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGL 155 (164)
Q Consensus 82 ~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~ 155 (164)
. ...+..+...|++++|..+++++.+.. +.+...++.+..++.+.|++++|.+.|++.. .| +..+|..+...+
T Consensus 166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 122344445589999999999998873 5678899999999999999999999999865 34 677899999999
Q ss_pred HhcCCCCC
Q 031208 156 AASGDLDA 163 (164)
Q Consensus 156 ~~~g~~~~ 163 (164)
...|+.++
T Consensus 245 ~~~g~~~e 252 (291)
T 3mkr_A 245 QHLGKPPE 252 (291)
T ss_dssp HHTTCCHH
T ss_pred HHcCCCHH
Confidence 99998753
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=2.2e-11 Score=87.34 Aligned_cols=148 Identities=13% Similarity=0.077 Sum_probs=108.3
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
.+..+-..+...|++++|...|++.. .| +..++..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 34444444444555555555544432 23 45677788888888888888888888887643 2245678888888888
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--C-CcchHHHHHHHHHhcCCCCCC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A 164 (164)
.|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ | +..+|..+...|.+.|++++|
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 899999999998888764 55677888888888899999999998888763 3 456888888888888888764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=2.3e-11 Score=88.51 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-c---ccHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-K---FTFPFV 85 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~t~~~l 85 (164)
..+|..+...+.+.|++++|...|+.+.+ .+...+..+...+.+.|++++|...|+++.+. .|+ . ..+..+
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQL 137 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHH
Confidence 44444444444444444444444444331 23344444444455555555555555554432 122 1 233333
Q ss_pred HHH------------HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHH
Q 031208 86 IKA------------CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTT 150 (164)
Q Consensus 86 l~~------------~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~ 150 (164)
... +...|++++|...++++.+.. +.+...+..+...|.+.|++++|.++|+++. ..+..+|..
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 222 444455555555555544432 2344455555555555555555555555543 224455555
Q ss_pred HHHHHHhcCCCCC
Q 031208 151 MISGLAASGDLDA 163 (164)
Q Consensus 151 li~~~~~~g~~~~ 163 (164)
+...|...|++++
T Consensus 217 l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 217 ISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHH
Confidence 5555555555543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=2.5e-11 Score=88.35 Aligned_cols=152 Identities=14% Similarity=0.013 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
.+...+..+...+.+.|++++|..+|+.+. ..+...|..+..++...|++++|...|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 457778888999999999999999999875 3467889999999999999999999999998764 335678889999
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCch---HHHHHHHH------------HHHhcCCchhHHHHhcccC---CCCcchHH
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDM---FVQSTLMD------------LYLKCGDVDGGRKMFDKMR---VRSVVSWT 149 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~------------~~~~~~~~~~a~~~~~~m~---~~~~~~~~ 149 (164)
.+.+.|++++|.+.++++.+.. +.+. ..+..+.. .|.+.|++++|..+|+++. ..+..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999988654 2233 55555543 4889999999999999876 33677899
Q ss_pred HHHHHHHhcCCCCCC
Q 031208 150 TMISGLAASGDLDAA 164 (164)
Q Consensus 150 ~li~~~~~~g~~~~A 164 (164)
.+...|.+.|++++|
T Consensus 182 ~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 182 LRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHHHHHHTTCGGGG
T ss_pred HHHHHHHHCCCHHHH
Confidence 999999999998875
No 11
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.34 E-value=1.8e-13 Score=99.41 Aligned_cols=138 Identities=11% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------------------
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG------------------- 74 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------------- 74 (164)
.+|..+..++.+.|++++|.+.|.+. +|...|..++.++...|++++|...++..++..
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCH
Confidence 35555555555555555555555432 333344444444444444444444333332210
Q ss_pred -------CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcch
Q 031208 75 -------FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVS 147 (164)
Q Consensus 75 -------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 147 (164)
-.|+..+|..+...|...|.+++|..+|..+ ..|..+..++.+.|+++.|.+.++++. ++.+
T Consensus 111 ~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~ 179 (449)
T 1b89_A 111 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRT 179 (449)
T ss_dssp HHHTTTTTCC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cchh
Confidence 0244445555555555555555555555543 245555555555555555555555552 6677
Q ss_pred HHHHHHHHHhcCCCCCC
Q 031208 148 WTTMISGLAASGDLDAA 164 (164)
Q Consensus 148 ~~~li~~~~~~g~~~~A 164 (164)
|..++.+|...|+|++|
T Consensus 180 Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 180 WKEVCFACVDGKEFRLA 196 (449)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCcHHHH
Confidence 88888888887776654
No 12
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=9.2e-11 Score=78.46 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
.+...+..+...+.+.|++++|...+++.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 133 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGT 133 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 357778888889999999999999999875 3467788888899999999999999999987753 345667888889
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
.+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999988764 3467788888999999999999999998775 23567889999999999998864
No 13
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=4.8e-11 Score=80.47 Aligned_cols=151 Identities=13% Similarity=-0.040 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~ 87 (164)
+...+..+...+.+.|++++|.+++++.. ..+...+..+...+...|++++|...+++....+..| +...+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 45566666677777777777777777654 2355667777777777777777777777776533344 3445666667
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHHHHHHHHHhcCCCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 163 (164)
.+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 7777777777777777776654 33456677777777777777777777776542 244566667777777776554
No 14
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.3e-10 Score=74.24 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
...+..+...+...|++++|...++...+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566677788899999999999998863 467788888899999999999999999987653 33566788888999
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.+++.. ..+..+|..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988764 4567788888899999999999999998875 23567888899999999887654
No 15
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=7e-11 Score=84.67 Aligned_cols=150 Identities=15% Similarity=0.034 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFV 85 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~l 85 (164)
+.+...|..+...+.+.|++++|...|+++. .| +...|..+..++.+.|++++|...|+++.+. .|+. ..+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 3455666667777777777777777777654 23 3445666666677777777777777666553 2433 334445
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~ 162 (164)
-..+...|++++|.+.++++.+.. +.+...|..+...|.+.|++++|...|+++. .| +...|..+-..+...|+++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 555566666666666666666543 2234566666666666666666666666553 22 2334444444444444444
No 16
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.29 E-value=6.3e-11 Score=78.21 Aligned_cols=148 Identities=10% Similarity=-0.049 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCC-cccHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTID-GSSLQALLLYNLMICNGFRPD-KFTFPFVIK 87 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~ 87 (164)
...+..+...+...|++++|.++++... ..+...+..+...+... |++++|...+++..+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 4445555555555555555555555543 12344555555555555 556666665555554222222 234455555
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---C-CCcchHHHHHHHHHhcCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---V-RSVVSWTTMISGLAASGDL 161 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~-~~~~~~~~li~~~~~~g~~ 161 (164)
.+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++.. . .+...+..+...+...|+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 5555556666655555555443 2234455555555555566666655555543 1 2334444444444544443
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.28 E-value=1.4e-10 Score=77.26 Aligned_cols=149 Identities=17% Similarity=0.041 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCC
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTID-----------GSSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~p 77 (164)
+...+..+-..+.+.|++++|...|++.. .| +...+..+-..+... |++++|...|++..+. .|
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P 115 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NP 115 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Cc
Confidence 46667777777888888888888888765 34 556777777778888 8888888888888764 35
Q ss_pred -CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHH
Q 031208 78 -DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMIS 153 (164)
Q Consensus 78 -~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~ 153 (164)
+...+..+-..+...|++++|...+++..+.. .+...+..+-..|...|++++|...|++.. .| +...+..+..
T Consensus 116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 193 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYAS 193 (217)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45567777788888899999999999888877 677888888888999999999999998775 34 5678888888
Q ss_pred HHHhcCCCCCC
Q 031208 154 GLAASGDLDAA 164 (164)
Q Consensus 154 ~~~~~g~~~~A 164 (164)
.+.+.|++++|
T Consensus 194 ~~~~~g~~~~A 204 (217)
T 2pl2_A 194 ALLLKGKAEEA 204 (217)
T ss_dssp HHTC-------
T ss_pred HHHHccCHHHH
Confidence 89999988876
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.27 E-value=2.4e-10 Score=75.40 Aligned_cols=152 Identities=7% Similarity=-0.132 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+...+...|++++|...|+... ..+...|..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 56678888889999999999999999875 2457788889999999999999999999997753 3356688888999
Q ss_pred HHhc-cchhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCC
Q 031208 89 CIAS-LAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 89 ~~~~-~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 163 (164)
+... |++++|...+++..+.+..| +...+..+...|.+.|++++|...|+++. .| +...|..+...|.+.|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 99999999999988733334 36788888899999999999999998875 33 56788889999999998765
Q ss_pred C
Q 031208 164 A 164 (164)
Q Consensus 164 A 164 (164)
|
T Consensus 166 A 166 (225)
T 2vq2_A 166 A 166 (225)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=2.2e-10 Score=73.92 Aligned_cols=151 Identities=13% Similarity=0.038 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
++.+|..+=..+.+.|++++|.+.|++.. .| +...|..+-..+.+.|++++|...+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678888889999999999999999875 34 67788889999999999999999999987653 2244566677788
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
+...++++.+...+.+..+.. +.+...+..+-..|.+.|++++|.+.|++.. .| +..+|..+-..|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888999999999999887764 4457788888899999999999999998775 33 667889999999999988765
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.25 E-value=1.2e-10 Score=78.61 Aligned_cols=151 Identities=11% Similarity=-0.087 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
...+..+...+...|++++|..+|+... ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5667788888999999999999999875 2467788999999999999999999999997753 33567888889999
Q ss_pred HhccchhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
...|++++|.+++++..+.+..| +...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988743445 56788888899999999999999999875 23577889999999999987654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.25 E-value=1.4e-10 Score=82.42 Aligned_cols=152 Identities=9% Similarity=-0.078 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------------
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-------------- 74 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------- 74 (164)
+..+|..+...+.+.|++++|...|++.. . .+..+|..+...+...|++++|...|+++.+..
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP 177 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccch
Confidence 56667777777777777777777777664 2 346667777777777777777777777765421
Q ss_pred ----------------------------CCC---CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 75 ----------------------------FRP---DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 75 ----------------------------~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
..| +...+..+...+...|++++|...+++..+.. +.+..+|..+...
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 012 34455566666666666666666666665543 3345566666666
Q ss_pred HHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 124 YLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
|.+.|++++|.+.|++.. .| +..+|..+...|.+.|++++|
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666554 22 355666666666666666543
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.23 E-value=2.3e-10 Score=76.14 Aligned_cols=153 Identities=15% Similarity=0.025 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
+++...+..+-..+.+.|++++|...|++..+ .+...|..+-..+.+.|++++|...|++..+.. +-+...+..+-
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56778888888899999999999999998653 467788888999999999999999999998753 23456788888
Q ss_pred HHHHhc-----------cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--CCcchHHHHHH
Q 031208 87 KACIAS-----------LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RSVVSWTTMIS 153 (164)
Q Consensus 87 ~~~~~~-----------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~ 153 (164)
..+.+. |++++|...+++..+.. +.+...+..+-..|...|++++|...|++..+ .+...|..+-.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 999999 99999999999998774 34577888888999999999999999987642 56678888999
Q ss_pred HHHhcCCCCCC
Q 031208 154 GLAASGDLDAA 164 (164)
Q Consensus 154 ~~~~~g~~~~A 164 (164)
.|...|++++|
T Consensus 160 ~~~~~g~~~~A 170 (217)
T 2pl2_A 160 LYLSMGRLDEA 170 (217)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHcCCHHHH
Confidence 99999988764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.21 E-value=2.9e-11 Score=87.99 Aligned_cols=136 Identities=8% Similarity=-0.060 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+-..|...|++++|...|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 3456778888889999998888887775 477789999999999999999999999877 3788999999
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCCCCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 164 (164)
.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ....-...++..|.+.|++++|
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHH
Confidence 9999999998888877 367888999999999998888887777655 2222234578888888887654
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.2e-10 Score=78.43 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC--Cc--------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcC------
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PH--------VFTWNLMIRALTIDGSSLQALLLYNLMICNG------ 74 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------ 74 (164)
.+...+..+-..+...|++++|...++...+ |+ ...|..+-..+...|++++|...|++.....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHH
Confidence 6777888888899999999999999988762 21 5778888889999999999999999987632
Q ss_pred ------------------CCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHH
Q 031208 75 ------------------FRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 75 ------------------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (164)
..| +...+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 223 34567777888889999999999999988765 4467788888999999999999999
Q ss_pred HhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 136 MFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 136 ~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
.|++.. .| +..+|..+...|.+.|++++|
T Consensus 195 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 195 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 998775 33 567888888889888887654
No 25
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=9.9e-10 Score=66.41 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=106.2
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
.|..+...+...|++++|..+++.+. ..+...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56777888999999999999999875 3467788888899999999999999999997754 3355678888899999
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999999998765 3457788889999999999999999998764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.19 E-value=2.1e-10 Score=79.75 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccC----CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIR----CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
+|+...+..+...+...++.+.|.+.++.+. .| +...+..+-..+...|++++|.+.+++ +.+...+..
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~ 135 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM 135 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence 4566677777788888888888888888753 24 344555555777888888888888877 456677888
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHH---HHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhc
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ---STLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAAS 158 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~ 158 (164)
+...+.+.|+.++|.+.++.+.+.. |+.... ..++..+...|++++|..+|+++. ..+...|+.+..+|.+.
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 8888889999999999999888764 553221 223344445688999999998876 23667888899999999
Q ss_pred CCCCCC
Q 031208 159 GDLDAA 164 (164)
Q Consensus 159 g~~~~A 164 (164)
|++++|
T Consensus 214 g~~~eA 219 (291)
T 3mkr_A 214 GRWEAA 219 (291)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 988765
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.18 E-value=8.7e-10 Score=78.09 Aligned_cols=150 Identities=9% Similarity=-0.090 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF------------- 75 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------- 75 (164)
+..++..+...+.+.|+++.|.+.|+... ..+..++..+...+...|++++|...++++.....
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence 45566667777777777777777777654 23566677777777777777777777777654321
Q ss_pred ----------------------------------CC---CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 76 ----------------------------------RP---DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 76 ----------------------------------~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
.| +..++..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 255 (368)
T 1fch_A 177 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 255 (368)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 11 13344444555555555555555555554432 22344555
Q ss_pred HHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCC
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~ 162 (164)
.+...|.+.|++++|.+.|++.. .| +..+|..+...|.+.|+++
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 55555555555555555555443 12 3445555555555555544
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.18 E-value=1.3e-10 Score=77.65 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
.+...|..+-..+...|+++.|..+|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677777788899999999999998752 467888889999999999999999999997753 335678888899
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
.+...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|...+++.. ..+...|..+...|.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998775 4567788889999999999999999999875 33677888999999999998764
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.17 E-value=1.1e-09 Score=77.50 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=103.1
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
+..++..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 46788889999999999999999999997753 3356789999999999999999999999998764 456788999999
Q ss_pred HHHhcCCchhHHHHhcccC--CC-C-----------cchHHHHHHHHHhcCCCCCC
Q 031208 123 LYLKCGDVDGGRKMFDKMR--VR-S-----------VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~--~~-~-----------~~~~~~li~~~~~~g~~~~A 164 (164)
.|.+.|++++|...|++.. .| + ..+|..+..+|...|++++|
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999999999999998875 12 2 57899999999999998865
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.15 E-value=6.7e-10 Score=77.35 Aligned_cols=121 Identities=11% Similarity=-0.031 Sum_probs=51.0
Q ss_pred HHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCcccHHHHHH
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG--------FRPDKFTFPFVIK 87 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~t~~~ll~ 87 (164)
+...+...|++++|...++...+ .+...+..+...+...|++++|...+++..+.. .+.+...+..+..
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 33344444444444444443321 223344444444444444444444444443210 0112234444444
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
.+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444444444444444332 123334444444444444444444444444
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.15 E-value=1e-09 Score=76.46 Aligned_cols=151 Identities=11% Similarity=0.013 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHhccC-CcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYG-KTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
+...|..+-..+...| +++.|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 4556666666777777 77777777776542 244567777777777777777777777776543 223455666777
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC-----------C-CcchHHHHHHHH
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-----------R-SVVSWTTMISGL 155 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----------~-~~~~~~~li~~~ 155 (164)
.+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++... | +..+|..+...|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 7777777777777777776543 34456777777777777888777777765541 2 245777777777
Q ss_pred HhcCCCCCC
Q 031208 156 AASGDLDAA 164 (164)
Q Consensus 156 ~~~g~~~~A 164 (164)
...|++++|
T Consensus 247 ~~~g~~~~A 255 (330)
T 3hym_B 247 RKLKKYAEA 255 (330)
T ss_dssp HHTTCHHHH
T ss_pred HHhcCHHHH
Confidence 777776543
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=2.8e-09 Score=82.65 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~ 87 (164)
+...++.+=..+.+.|++++|.+.|++.. .| +...|..+-.+|.+.|++++|...|++..+. .|+ ...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 46788888999999999999999999876 34 5788999999999999999999999999774 464 568899999
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
++.+.|++++|.+.+++..+.. +-+...|+.+-..|.+.|++++|.+.|++.. .| +...|..+...|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999998764 3457789999999999999999999999875 44 567999999999999999875
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.10 E-value=3.7e-10 Score=80.18 Aligned_cols=146 Identities=10% Similarity=-0.035 Sum_probs=117.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC--CC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR--CP---HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
+..+...+.+.|++++|..+|++.. .| +..+|..+...+...|++++|...|++..+.. +.+..+|..+...+.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLA 258 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4455778889999999999999886 23 57889999999999999999999999997753 345678999999999
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--C-------------CcchHHHHHHHH
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-------------SVVSWTTMISGL 155 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-------------~~~~~~~li~~~ 155 (164)
..|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+ | +..+|..+-.++
T Consensus 259 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 9999999999999998774 34578899999999999999999999998751 1 267899999999
Q ss_pred HhcCCCCC
Q 031208 156 AASGDLDA 163 (164)
Q Consensus 156 ~~~g~~~~ 163 (164)
...|+.+.
T Consensus 338 ~~~g~~~~ 345 (365)
T 4eqf_A 338 SLMDQPEL 345 (365)
T ss_dssp HHHTCHHH
T ss_pred HHcCcHHH
Confidence 88887653
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.09 E-value=4.6e-09 Score=72.97 Aligned_cols=151 Identities=11% Similarity=-0.034 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF------------- 75 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------- 75 (164)
+...+..+...+...|++++|...|++.. ..+...+..+...+...|++++|...+++......
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 56667777777888888888888887765 23566777777777888888888877777654310
Q ss_pred -----------------------------------CCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHH
Q 031208 76 -----------------------------------RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTL 120 (164)
Q Consensus 76 -----------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 120 (164)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 212 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKL 212 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 1123344444455555566666666665555443 2334555555
Q ss_pred HHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCC
Q 031208 121 MDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 121 l~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 163 (164)
...|.+.|++++|...|++.. ..+..+|..+...|.+.|++++
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 566666666666666665543 1234455556666666665543
No 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.07 E-value=5.1e-09 Score=77.15 Aligned_cols=153 Identities=13% Similarity=-0.012 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-------
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF------- 80 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------- 80 (164)
|+...|..+..++.+.|+++.|...++... .| +...|..+..++.+.|++++|...|+++...+- ++..
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHH
Confidence 789999999999999999999999999875 34 567889999999999999999999999876541 1111
Q ss_pred ------------------------------------------------------------------------cHHHHHHH
Q 031208 81 ------------------------------------------------------------------------TFPFVIKA 88 (164)
Q Consensus 81 ------------------------------------------------------------------------t~~~ll~~ 88 (164)
.+......
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 11111122
Q ss_pred HH---hccchhhHHHHHHHHHH-----hCC--------CCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHH
Q 031208 89 CI---ASLAIEKGKEVHGLAVK-----AGF--------SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTT 150 (164)
Q Consensus 89 ~~---~~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~ 150 (164)
+. +.|++++|..+++++.+ ..- +.+...+..+...|.+.|++++|..+|++.. .|+...|..
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 275 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY 275 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHH
Confidence 22 26788888888888776 211 2234566677777888888888888887764 334667777
Q ss_pred HHHHHHhcCCCCCC
Q 031208 151 MISGLAASGDLDAA 164 (164)
Q Consensus 151 li~~~~~~g~~~~A 164 (164)
+...|...|++++|
T Consensus 276 l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 276 MALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHTSSCCTTG
T ss_pred HHHHHHHCCCHHHH
Confidence 77777777777764
No 36
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=2.9e-09 Score=64.29 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 125 (164)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56777888999999999999999997753 3356678888899999999999999999998775 445678888999999
Q ss_pred hcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 126 KCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
+.|++++|.++|+++. ..+..+|..+...|.+.|++++|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence 9999999999999875 23567888899999999987654
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.8e-09 Score=72.56 Aligned_cols=152 Identities=14% Similarity=0.012 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC----cccHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG--FRPD----KFTFPF 84 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~t~~~ 84 (164)
...+..+-..+...|++++|..+|+...+ .+...|..+-..+...|++++|...+++..+.. ..|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45677788899999999999999987642 667789999999999999999999999986632 1122 478888
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhC------------------------CCC-chHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAG------------------------FSR-DMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g------------------------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+...+...|++++|...+++..+.. ..| +...+..+...|.+.|++++|...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999988742 233 456778888899999999999999998
Q ss_pred cC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 140 MR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 140 m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
.. ..+..+|..+...|.+.|++++|
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 75 33677899999999999988754
No 38
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.04 E-value=1.5e-08 Score=64.57 Aligned_cols=129 Identities=11% Similarity=-0.093 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
.+..++..+...+...|++++|...++... ..+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 118 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGV 118 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHH
Confidence 357778888889999999999999999875 3467788888999999999999999999997753 345677888889
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999998775 4567888999999999999999999998765
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.03 E-value=1.7e-09 Score=75.13 Aligned_cols=140 Identities=7% Similarity=-0.090 Sum_probs=119.1
Q ss_pred HhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 23 CSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
+...|++++|..+++... ..+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 778899999999999875 2467889999999999999999999999997753 335678889999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-------------CcchHHHHHHHHHhcCCCCCC
Q 031208 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-------------SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 100 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-------------~~~~~~~li~~~~~~g~~~~A 164 (164)
..+++..+.. +.+...+..+...|.+.|++++|.+.|++.. .| +..+|..+...|.+.|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9999998765 3467788999999999999999999998775 22 366889999999999987654
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.02 E-value=6e-09 Score=73.16 Aligned_cols=150 Identities=9% Similarity=0.014 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CcccHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP----DKFTFPF 84 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ 84 (164)
+..++..+-..+...|+++.|...|+... .| +...|..+...+...|++++|...|++..+. .| +...+..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQ 113 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHH
Confidence 46677777788888888888888888765 23 5677888888888888888888888888764 34 2233333
Q ss_pred H------------HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHH
Q 031208 85 V------------IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWT 149 (164)
Q Consensus 85 l------------l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~ 149 (164)
+ ...+...|++++|..++++..+.. +.+...+..+...|.+.|++++|...+++... .+..+|.
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 192 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3 467788888888888888887664 34667788888888888888888888887652 3566788
Q ss_pred HHHHHHHhcCCCCCC
Q 031208 150 TMISGLAASGDLDAA 164 (164)
Q Consensus 150 ~li~~~~~~g~~~~A 164 (164)
.+...|...|++++|
T Consensus 193 ~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 193 KISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCHHHH
Confidence 888888888876643
No 41
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.3e-09 Score=79.05 Aligned_cols=151 Identities=10% Similarity=0.013 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
+..++..+...+...|+++.|..+|+... .|+...|..+...+...|++++|...+++..... +.+...+..+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 45667777888888999999999998875 3557778888888899999999999999987653 33566788888889
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHHhcCCCCCC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 164 (164)
...|++++|...+++..+.. +.+...+..+...|.+.|++++|..+|+++. ..+..+|..+...|.+.|++++|
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999888764 3456788888888899999999999988765 23567888888888888887653
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.00 E-value=5.1e-09 Score=73.51 Aligned_cols=150 Identities=13% Similarity=-0.015 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
|+..+..+-..+...|++++|...|+... . .+...+..+-..+...|++++|...|++..+.. +-+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45567778888999999999999999875 2 457788999999999999999999999997753 2255788899999
Q ss_pred HHhccchhhHHHHHHHHHHhCCCC----chHHHHHH------------HHHHHhcCCchhHHHHhcccC---CCCcchHH
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSR----DMFVQSTL------------MDLYLKCGDVDGGRKMFDKMR---VRSVVSWT 149 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~---~~~~~~~~ 149 (164)
+...|++++|...+++..+.. | +...+..+ ...+...|++++|.++|+++. ..+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 999999999999999987653 4 34444444 478889999999999999875 33667888
Q ss_pred HHHHHHHhcCCCCCC
Q 031208 150 TMISGLAASGDLDAA 164 (164)
Q Consensus 150 ~li~~~~~~g~~~~A 164 (164)
.+...|...|++++|
T Consensus 159 ~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 159 LRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCHHHH
Confidence 999999999987654
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.99 E-value=1.8e-08 Score=68.43 Aligned_cols=137 Identities=9% Similarity=-0.034 Sum_probs=94.5
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc--ccHHHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK--FTFPFVIKAC 89 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~ 89 (164)
.+-..-..+.+.|+++.|..+|+... .| +...+..+...+...|++++|...+++..+.+-.|+. ..|..+-..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34445567777888888888888764 23 3446777777888888888888888888763322222 1267777888
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--C-CcchHHHHH
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-SVVSWTTMI 152 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li 152 (164)
...|++++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+ | +...|..+-
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 88888888888888877654 33456777788888888888888888877653 2 334454444
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.99 E-value=9.4e-09 Score=69.83 Aligned_cols=124 Identities=13% Similarity=-0.082 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+..++..+-..+...|++++|...|++.. . .+...|..+-..+...|++++|...|++..+.. +.+...+..+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 46667777778888888888888888765 2 356778888888888888888888888886642 2345677777888
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhc
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
+...|++++|...+++..+.. |+.......+..+.+.|++++|...++
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888888888888877653 443333344444455566666666553
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.98 E-value=7.2e-09 Score=76.91 Aligned_cols=148 Identities=13% Similarity=0.055 Sum_probs=113.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
++..+-..+...|+++.|...|+... .|+...|..+-..+...|++++|...|++..+.. +.+...+..+...+...
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 45555567777888888888888775 4667778888888888888899988888887643 23456788888888888
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--C-CCcchHHHHHHHHHhcCCCCCC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--V-RSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A 164 (164)
|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++.. . .+...|..+...|...|++++|
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 88888888888887764 3346678888888888888888888888765 2 3566888888888888877653
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.96 E-value=6.2e-09 Score=77.06 Aligned_cols=150 Identities=12% Similarity=-0.006 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHhccCCc-HHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKT-DHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~-~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
+...+..+-..+...|++ ++|.+.|++.. .| +...|..+-..|...|++++|...|++..+. .|+...+..+-.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 456666666777778888 88888887764 23 4667777777888888888888888887664 366667777777
Q ss_pred HHHhc---------cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--------CCchhHHHHhcccC--CC----C
Q 031208 88 ACIAS---------LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC--------GDVDGGRKMFDKMR--VR----S 144 (164)
Q Consensus 88 ~~~~~---------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~m~--~~----~ 144 (164)
.+... |++++|.+.+++..+.. +.+...|..+-..|... |++++|.+.|++.. .| +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 77777 78888888888777654 33466777777777777 77888887777654 23 5
Q ss_pred cchHHHHHHHHHhcCCCCCC
Q 031208 145 VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A 164 (164)
...|..+-..|...|++++|
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH
Confidence 56777777777777776654
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.94 E-value=1.9e-08 Score=68.28 Aligned_cols=150 Identities=15% Similarity=0.033 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
.+..+|..+-..+...|++++|...|+...+ | +...|..+...+...|++++|...|++..+. .|+.......+.
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 152 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLY 152 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 3577888888899999999999999998762 3 5678888889999999999999999999774 466655666666
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCC-------cchHHHHHHHHHhcCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRS-------VVSWTTMISGLAASGD 160 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~li~~~~~~g~ 160 (164)
.+...|++++|...+++..... +++...+ .+...+...++.++|...+++....+ ..+|..+...|.+.|+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 7778899999999998877654 3444444 47777888888888999888776432 4788888999999998
Q ss_pred CCCC
Q 031208 161 LDAA 164 (164)
Q Consensus 161 ~~~A 164 (164)
+++|
T Consensus 231 ~~~A 234 (275)
T 1xnf_A 231 LDSA 234 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.92 E-value=5.3e-08 Score=70.25 Aligned_cols=149 Identities=7% Similarity=-0.041 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGS-SLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
...|..+-..+.+.|++++|...+++.. .| +...|+.+-..+...|+ +++|+..|++..+.. +-+...|..+-.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4567777788889999999999999876 34 57788889999999997 999999999998753 2255688888899
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHh-cCCCCC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAA-SGDLDA 163 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~-~g~~~~ 163 (164)
+...|++++|...+++..+.. +-+...|..+-.++.+.|++++|...|+++. .| +...|+.+-..|.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999998875 4567888999999999999999999999876 33 67788888888888 555454
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.87 E-value=2.2e-08 Score=69.90 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=117.3
Q ss_pred CCC-CHHHHHHHHHHHhccCCcHHHHHHHhccCC--Cc-Hh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 9 LSN-DQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PH-VF-TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 9 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
+.| +...|..+...+.+.|+++.|..+|++..+ |+ .. .|..+...+.+.|++++|..+|++..+.. +++...|.
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 172 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYV 172 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345 456899999999999999999999998763 43 33 79999999999999999999999998753 23333443
Q ss_pred HHHHHHH-hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC-----C--CcchHHHHHHHH
Q 031208 84 FVIKACI-ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-----R--SVVSWTTMISGL 155 (164)
Q Consensus 84 ~ll~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~--~~~~~~~li~~~ 155 (164)
....... ..|+.++|..+++...+.. +.+...|..++..+.+.|+.++|..+|++... | ....|...+..+
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3322222 3699999999999887653 34678889999999999999999999997753 2 345788888888
Q ss_pred HhcCCCCC
Q 031208 156 AASGDLDA 163 (164)
Q Consensus 156 ~~~g~~~~ 163 (164)
.+.|+.++
T Consensus 252 ~~~g~~~~ 259 (308)
T 2ond_A 252 SNIGDLAS 259 (308)
T ss_dssp HHHSCHHH
T ss_pred HHcCCHHH
Confidence 88887654
No 50
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.87 E-value=9.8e-09 Score=75.99 Aligned_cols=150 Identities=11% Similarity=-0.053 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CCcHhHHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCcc
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTID---------GSSLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~ 80 (164)
+...|..+-..|.+.|++++|...|++.. .|+...+..+-..+... |++++|...|++..+.. +-+..
T Consensus 136 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 214 (474)
T 4abn_A 136 LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGR 214 (474)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHH
Confidence 47788999999999999999999999875 57778888888899999 99999999999997753 23567
Q ss_pred cHHHHHHHHHhc--------cchhhHHHHHHHHHHhCCC---CchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-Ccc
Q 031208 81 TFPFVIKACIAS--------LAIEKGKEVHGLAVKAGFS---RDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVV 146 (164)
Q Consensus 81 t~~~ll~~~~~~--------~~~~~a~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~ 146 (164)
.|..+-.++... |++++|...+++..+.. + .+...|..+-..|.+.|++++|.+.|++.. .| +..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 888888999888 99999999999998864 2 367889999999999999999999999875 34 455
Q ss_pred hHHHHHHHHHhcCCCCC
Q 031208 147 SWTTMISGLAASGDLDA 163 (164)
Q Consensus 147 ~~~~li~~~~~~g~~~~ 163 (164)
.+..+-..+...|++++
T Consensus 294 a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777776665543
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.86 E-value=4.4e-08 Score=72.67 Aligned_cols=131 Identities=9% Similarity=-0.079 Sum_probs=113.8
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
..|+..++..+-..+...|+++.|...|+... ..+..+|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 350 (537)
T 3fp2_A 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQL 350 (537)
T ss_dssp HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHH
T ss_pred cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35667888889999999999999999999875 2467789999999999999999999999998753 3346788899
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999998775 4457788999999999999999999999875
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=1.7e-07 Score=62.27 Aligned_cols=147 Identities=7% Similarity=-0.100 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC---C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR---C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFV 85 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~l 85 (164)
.|+..+...-..+.+.|++++|...|+... . ++...+..+-.++...|++++|...|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 356777778888999999999999999765 2 67777777888999999999999999999875 35 45678888
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCch-------HHHHHHHHHHHhcCCchhHHHHhcccCC--CC---cchHHHHHH
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDM-------FVQSTLMDLYLKCGDVDGGRKMFDKMRV--RS---VVSWTTMIS 153 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~---~~~~~~li~ 153 (164)
-..+...|++++|...+++..+.. +.+. ..|..+-..+.+.|++++|.+.|++..+ |+ ...|..+-.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999998764 2233 4577777888899999999999998763 33 346666666
Q ss_pred HHHhcCC
Q 031208 154 GLAASGD 160 (164)
Q Consensus 154 ~~~~~g~ 160 (164)
.|...|+
T Consensus 162 ~~~~~~~ 168 (228)
T 4i17_A 162 LFYNNGA 168 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 53
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=2.8e-07 Score=60.37 Aligned_cols=125 Identities=12% Similarity=-0.089 Sum_probs=106.1
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccch
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI 95 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 95 (164)
+..+-..+...|++++|...|++...|+...|..+-..+...|++++|...|++..+.. +.+...+..+-..+...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556677889999999999999988899999999999999999999999999987753 33566888899999999999
Q ss_pred hhHHHHHHHHHHhCC--------------CC-chHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 96 EKGKEVHGLAVKAGF--------------SR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~--------------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
++|.+.+++..+..- .| ....+..+-..|.+.|++++|.+.|+...
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999887531 11 23678888899999999999999998765
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.84 E-value=3e-07 Score=58.96 Aligned_cols=129 Identities=12% Similarity=-0.059 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+.+.|+++.|...+.... ..+...+..+-..+...++++.+...+.+..... +-+...+..+-..
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLV 116 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 56778888889999999999999999875 3456677777788899999999999999987643 3356678888999
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
+.+.|++++|.+.+++..+.. +.+...|..+-..|.+.|++++|.+.|++..+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999998775 45678899999999999999999999998753
No 55
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.84 E-value=2.5e-09 Score=72.67 Aligned_cols=130 Identities=15% Similarity=0.069 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC----------C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC----------P-HVFTWNLMIRALTIDGSSLQALLLYNLMICN------G 74 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 74 (164)
...++..+-..+...|++++|...+++... | ...++..+-..+...|++++|...|.+.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 466788888899999999999999987651 2 3457888899999999999999999998653 1
Q ss_pred CCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHh------CCCC-chHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 75 FRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKA------GFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 75 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-.| ....+..+...+...|++++|...+++..+. +-.| ...++..+...|.+.|++++|.++|++..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 122 3567888889999999999999999988765 2123 35678888999999999999999887654
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.84 E-value=6.1e-09 Score=71.84 Aligned_cols=130 Identities=14% Similarity=0.036 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC----------C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC----------P-HVFTWNLMIRALTIDGSSLQALLLYNLMICN------G 74 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 74 (164)
...++..+-..+...|++++|...+++... | ....+..+...+...|++++|...+++..+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 456677888899999999999999987641 2 2456888888999999999999999998653 2
Q ss_pred CCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHh------CCCC-chHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 75 FRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKA------GFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 75 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-.| ....+..+...+...|++++|..++++..+. +..| ....+..+...|.+.|++++|.+.|++..
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223 3456788889999999999999999988765 2233 35578888899999999999999987765
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.81 E-value=1.1e-08 Score=70.49 Aligned_cols=153 Identities=12% Similarity=-0.007 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC----------C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC----------P-HVFTWNLMIRALTIDGSSLQALLLYNLMICN------G 74 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 74 (164)
+..++..+-..+...|++++|..+|++..+ | ....+..+-..+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467788888899999999999999998753 1 2356788888999999999999999998653 2
Q ss_pred CCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHh------CCCC-chHHHHHHHHHHHhcCCchhHHHHhcccCC----
Q 031208 75 FRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKA------GFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---- 142 (164)
Q Consensus 75 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---- 142 (164)
-.| ....+..+...+...|++++|...+++..+. +-.| ....+..+...|.+.|++++|.++|++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3467888899999999999999999988764 3223 356778888999999999999999987642
Q ss_pred ---C----CcchHHHHHHHHHhcCCCCCC
Q 031208 143 ---R----SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 143 ---~----~~~~~~~li~~~~~~g~~~~A 164 (164)
+ ...++..+...|...|++++|
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1 345788889999999988764
No 58
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=6e-08 Score=67.15 Aligned_cols=153 Identities=14% Similarity=-0.026 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
++.+...+..+-..+...|+++.|...|++.. .| +...+..+-..+...|++++|...+++.... .|+.......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 44455566667778889999999999999875 34 6678888899999999999999999998654 3554322222
Q ss_pred -HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCC---cchHHHHHHHHHhcC
Q 031208 86 -IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS---VVSWTTMISGLAASG 159 (164)
Q Consensus 86 -l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~---~~~~~~li~~~~~~g 159 (164)
...+...++.+.|...+++..... +.+...+..+-..|...|++++|...|.++. .|+ ...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233567778888999898887765 4567888999999999999999999999886 342 668999999999999
Q ss_pred CCCCC
Q 031208 160 DLDAA 164 (164)
Q Consensus 160 ~~~~A 164 (164)
+.++|
T Consensus 270 ~~~~a 274 (287)
T 3qou_A 270 TGDAL 274 (287)
T ss_dssp TTCHH
T ss_pred CCCcH
Confidence 88764
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.78 E-value=1.9e-07 Score=65.13 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHh-------ccCCc-------HHHHHHHhccCC---C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031208 11 NDQLLVRKLLDLCS-------FYGKT-------DHALLVFSQIRC---P-HVFTWNLMIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 11 ~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
-+...|..+...+. +.|++ ++|..+|++... | +...|..+...+.+.|++++|..+|++..+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45667777777665 35886 899999997643 4 556899999999999999999999999987
Q ss_pred cCCCCCcc--cHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH-hcCCchhHHHHhcccC--CC-Ccc
Q 031208 73 NGFRPDKF--TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL-KCGDVDGGRKMFDKMR--VR-SVV 146 (164)
Q Consensus 73 ~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~--~~-~~~ 146 (164)
+.|+.. .|..+...+.+.|++++|..++++..+.. +++...|........ ..|+.+.|..+|+... .| +..
T Consensus 128 --~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 204 (308)
T 2ond_A 128 --IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 204 (308)
T ss_dssp --SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred --ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 456543 78899999999999999999999988754 234444543333322 3699999999999875 23 667
Q ss_pred hHHHHHHHHHhcCCCCCC
Q 031208 147 SWTTMISGLAASGDLDAA 164 (164)
Q Consensus 147 ~~~~li~~~~~~g~~~~A 164 (164)
.|..++..+.+.|++++|
T Consensus 205 ~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHH
Confidence 889999999998887654
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=3.4e-07 Score=62.44 Aligned_cols=139 Identities=12% Similarity=-0.112 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhc----cCCcHHHHHHHhccCC-CcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 13 QLLVRKLLDLCSF----YGKTDHALLVFSQIRC-PHVFTWNLMIRALTI----DGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 13 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
...+..+-..+.. .+++++|...|++..+ .+...+..+-..|.. .+++++|...|++..+.+ +...+.
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 114 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCA 114 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHH
Confidence 3444445555555 6666666666665432 344555555555666 666666666666665543 444555
Q ss_pred HHHHHHHh----ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCchhHHHHhcccCCC-CcchHHHHHHH
Q 031208 84 FVIKACIA----SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK----CGDVDGGRKMFDKMRVR-SVVSWTTMISG 154 (164)
Q Consensus 84 ~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~-~~~~~~~li~~ 154 (164)
.+-..|.. .+++++|...+++..+.+ +...+..+-..|.+ .+++++|...|++..+. +...+..+-..
T Consensus 115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 191 (273)
T 1ouv_A 115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555665 666666666666666544 33444555555555 66666666666654422 34455555555
Q ss_pred HHh
Q 031208 155 LAA 157 (164)
Q Consensus 155 ~~~ 157 (164)
|..
T Consensus 192 ~~~ 194 (273)
T 1ouv_A 192 YHH 194 (273)
T ss_dssp HHH
T ss_pred HHc
Confidence 555
No 61
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=4e-07 Score=54.00 Aligned_cols=93 Identities=13% Similarity=0.014 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
..+..+...+...|+++.|.+++++.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 334444444555555555555554433 1233444444444555555555555555544321 123334444444445
Q ss_pred hccchhhHHHHHHHHHH
Q 031208 91 ASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~ 107 (164)
..|++++|...+++..+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555544443
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=9.5e-07 Score=60.20 Aligned_cols=147 Identities=10% Similarity=-0.115 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHhc----cCCcHHHHHHHhccCC-CcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcccH
Q 031208 12 DQLLVRKLLDLCSF----YGKTDHALLVFSQIRC-PHVFTWNLMIRALTI----DGSSLQALLLYNLMICNGFRPDKFTF 82 (164)
Q Consensus 12 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~ 82 (164)
+...+..+-..+.. .+++++|...|++..+ .+...+..+-..|.. .+++++|...|++..+.+ +...+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 56677777778888 9999999999998653 467778888888888 999999999999998865 45566
Q ss_pred HHHHHHHHh----ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCchhHHHHhcccCCC-CcchHHHHHH
Q 031208 83 PFVIKACIA----SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK----CGDVDGGRKMFDKMRVR-SVVSWTTMIS 153 (164)
Q Consensus 83 ~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~-~~~~~~~li~ 153 (164)
..+-..+.. .++.++|...+++..+.+ +...+..+-..|.+ .+++++|.+.|++..+. +...+..+-.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 226 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGA 226 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 677777777 899999999999988764 35677778888888 99999999999876533 4567777778
Q ss_pred HHHh----cCCCCCC
Q 031208 154 GLAA----SGDLDAA 164 (164)
Q Consensus 154 ~~~~----~g~~~~A 164 (164)
.|.. .+++++|
T Consensus 227 ~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHTTSSSSCCSTTH
T ss_pred HHHcCCCcccCHHHH
Confidence 8887 7777765
No 63
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.75 E-value=1.4e-07 Score=64.06 Aligned_cols=151 Identities=11% Similarity=-0.036 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC--Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
+...+..+...+...|++++|...++...+ ++ ...|..+-..+...|++++|...|++..+.. +.+...+..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 345788888899999999999999997653 22 2348888899999999999999999997753 3355788999
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCC--
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGD-- 160 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~-- 160 (164)
...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|++.. .| +...|..+...+...|+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcch
Confidence 999999999999999999887652 3345566666624445569999999999876 33 45677778888887777
Q ss_pred -CCCC
Q 031208 161 -LDAA 164 (164)
Q Consensus 161 -~~~A 164 (164)
+++|
T Consensus 194 ~~~~A 198 (272)
T 3u4t_A 194 KQGLA 198 (272)
T ss_dssp SSCTT
T ss_pred hhHHH
Confidence 5554
No 64
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=7.4e-07 Score=52.82 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=91.7
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 44 VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
...|..+...+...|++++|...+.+..... +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5677888889999999999999999997653 3356678888999999999999999999998765 4567788899999
Q ss_pred HHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhc
Q 031208 124 YLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAAS 158 (164)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~ 158 (164)
|.+.|++++|...|+++. .| +...+..+-..+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999875 33 445555555555443
No 65
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=2.1e-07 Score=58.23 Aligned_cols=136 Identities=11% Similarity=-0.004 Sum_probs=106.0
Q ss_pred HHhccCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhh
Q 031208 22 LCSFYGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEK 97 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~ 97 (164)
.+...|+++.|...+..... | +...+-.+-..|.+.|++++|.+.|++..+. .| +...|..+-..+.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 34567788999998887764 2 2344556777899999999999999999775 35 56788899999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHh-cccC--CC-CcchHHHHHHHHHhcCC
Q 031208 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMF-DKMR--VR-SVVSWTTMISGLAASGD 160 (164)
Q Consensus 98 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~m~--~~-~~~~~~~li~~~~~~g~ 160 (164)
|...+++..+.. +-+...+..+-..|.+.|+.++|.+.| ++.. .| +..+|...-..+...|+
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999998774 345778888999999999998877654 6543 44 66677777777777765
No 66
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=6.5e-07 Score=53.51 Aligned_cols=115 Identities=6% Similarity=-0.192 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
..+..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344445555555666666666666654432 2234455555555566666666666666555442 22344555555566
Q ss_pred HhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCC
Q 031208 125 LKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDL 161 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~ 161 (164)
.+.|++++|...|++.. .| +...+..+...+.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66666666666665543 22 344555555555555554
No 67
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=2.2e-07 Score=59.52 Aligned_cols=145 Identities=14% Similarity=-0.008 Sum_probs=108.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH--H
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC--I 90 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~ 90 (164)
+...-..+.+.|+++.|...|++..+ .+...+..+-..+...|++++|...|++.... .|+.. +..+...+ .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHH
Confidence 44556678889999999999999873 35678888889999999999999999998654 34332 22222211 2
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCC---cchHHHHHHHHHhcCCCCCC
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS---VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~---~~~~~~li~~~~~~g~~~~A 164 (164)
..+....+...+++..+.. +.+...+..+-..+.+.|++++|...|++.. .|+ ...+..+...|...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2233445678888877664 3357888889999999999999999999875 332 45889999999999998764
No 68
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.73 E-value=2.8e-07 Score=64.40 Aligned_cols=128 Identities=11% Similarity=0.006 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCC-----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----Cc
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-----DK 79 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~ 79 (164)
+++..+...+-.++...|++++|.+++..... -+...+..++..+.+.|+++.|.+.+++|.+. .| +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 45666666777788899999999999998732 35678889999999999999999999999774 56 24
Q ss_pred ccHHHHHHH--HHhcc--chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 80 FTFPFVIKA--CIASL--AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 80 ~t~~~ll~~--~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+...+..+ ....| +..+|..+|+++... .|+...-..++.++.+.|++++|.+.++.+.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455556655 33334 899999999998654 3553344455558999999999999997653
No 69
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.66 E-value=5.8e-07 Score=64.83 Aligned_cols=146 Identities=12% Similarity=0.012 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHhccCC-cHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGK-TDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~-~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 87 (164)
+..+|+.+-..+.+.|+ +++|...|++.. .| +...|..+-.++...|++++|+..|++..+.. +-+...|..+-.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~ 208 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQW 208 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHH
Confidence 46778888888888996 999999999876 33 66788888888999999999999999987743 235667888888
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh-cCCchhH-----HHHhcccC--CC-CcchHHHHHHHHHhc
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK-CGDVDGG-----RKMFDKMR--VR-SVVSWTTMISGLAAS 158 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~m~--~~-~~~~~~~li~~~~~~ 158 (164)
++.+.|++++|...++++.+.. +-+...|+.+-..|.+ .|..++| .+.|++.. .| +...|+.+-..+...
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 8899999999999999988775 3467788888888888 6665777 36666554 33 566777777777776
Q ss_pred C
Q 031208 159 G 159 (164)
Q Consensus 159 g 159 (164)
|
T Consensus 288 g 288 (382)
T 2h6f_A 288 G 288 (382)
T ss_dssp C
T ss_pred C
Confidence 6
No 70
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.66 E-value=2.4e-07 Score=69.85 Aligned_cols=128 Identities=11% Similarity=-0.063 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+.+.|++++|.+.+++..+ .+...|..+-..+...|++++|...|++..+.. +-+...+..+-..
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 466777788888889999999999987653 356778888888899999999999999987653 2345678888888
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc---CCchhHHHHhcccC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC---GDVDGGRKMFDKMR 141 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~ 141 (164)
+.+.|++++|.+.+++..+.. +.+...+..+...+.+. |+.++|.+.+++..
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999888764 34567788888888888 88999999888775
No 71
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=1.2e-06 Score=52.32 Aligned_cols=117 Identities=10% Similarity=-0.066 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+...|+++.|...|+... ..+...|..+...+...|++++|...+.+..... +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 46677778888999999999999999865 2467788888999999999999999999997753 3346678888899
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCc
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDV 130 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 130 (164)
+...|++++|...+++..+.. +.+...+..+...+.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999998775 34566777777888777765
No 72
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=2.2e-06 Score=51.46 Aligned_cols=96 Identities=15% Similarity=-0.063 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+.+.|+++.|...|+.... .+...+..+-..+...|++++|...+++..+.. +.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344455555555556666666665555431 244455555555555566666666555554431 1233444555555
Q ss_pred HHhccchhhHHHHHHHHHHh
Q 031208 89 CIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~ 108 (164)
+.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 73
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-06 Score=52.28 Aligned_cols=117 Identities=9% Similarity=-0.081 Sum_probs=95.4
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
.+...|..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 355678888889999999999999999997653 2356778888899999999999999999998764 34677888899
Q ss_pred HHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCC
Q 031208 122 DLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGD 160 (164)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~ 160 (164)
..|.+.|++++|.+.|++.. .| +...+..+...+.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999875 33 45677777777766553
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.62 E-value=7.1e-07 Score=68.94 Aligned_cols=146 Identities=10% Similarity=-0.061 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVI 86 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll 86 (164)
.+...+..+-..+.+.|++++|...|++..+ .+...|..+-.++...|++++|...|++..+. .| +...+..+-
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg 508 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALA 508 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 3566788888899999999999999998763 46778888888999999999999999999775 35 566788899
Q ss_pred HHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--C-CcchHHHHHHHHHhcCC
Q 031208 87 KACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-SVVSWTTMISGLAASGD 160 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 160 (164)
.++.+.|++++ .+.+++..+.. +.+...|..+-..|.+.|++++|.+.|++..+ | +...|..+..++...|+
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999 99999998775 34577889999999999999999999999873 4 34567777777666554
No 75
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1.8e-06 Score=53.96 Aligned_cols=126 Identities=10% Similarity=-0.141 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
...+..+-..+...|+++.|...|+... ..+...|..+-..+...|++++|...+.+..... +.+...+..+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3456667778888999999999999865 3467788888889999999999999999987753 33566788888999
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHH--HHHHHHHHhcCCchhHHHHhccc
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
...|++++|...+++..+.. +.+...+ -.....+.+.|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999999988764 2233444 33444477889999998888754
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.61 E-value=6e-07 Score=60.87 Aligned_cols=146 Identities=13% Similarity=-0.025 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC--Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-cccHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPD-KFTFP 83 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~t~~ 83 (164)
+...+-..-..+.+.|++++|...|+.... |+ ...+..+-.++.+.|++++|...|++..+..- .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455666667788899999999999998863 43 56777888889999999999999999977531 112 23455
Q ss_pred HHHHHHHh--------ccchhhHHHHHHHHHHhCCCCchHHH-----------------HHHHHHHHhcCCchhHHHHhc
Q 031208 84 FVIKACIA--------SLAIEKGKEVHGLAVKAGFSRDMFVQ-----------------STLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 84 ~ll~~~~~--------~~~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~ 138 (164)
.+-.++.. .|++++|...+++..+.. +.+.... ..+-..|.+.|++++|...|+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 66677777 999999999999998764 2223333 445778899999999999999
Q ss_pred ccC--CCC----cchHHHHHHHHHhc
Q 031208 139 KMR--VRS----VVSWTTMISGLAAS 158 (164)
Q Consensus 139 ~m~--~~~----~~~~~~li~~~~~~ 158 (164)
+.. .|+ ...+..+..+|...
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 875 343 23566677777665
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.58 E-value=1.9e-06 Score=67.01 Aligned_cols=129 Identities=16% Similarity=-0.005 Sum_probs=111.4
Q ss_pred CC-CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHH
Q 031208 10 SN-DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPF 84 (164)
Q Consensus 10 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ 84 (164)
.| +...+..+-.++.+.|++++|...|++.. .| +...|..+-..+.+.|++++|.+.|++..+. .| +...|..
T Consensus 39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~ 116 (723)
T 4gyw_A 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSN 116 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 45 46778888899999999999999999875 34 5778999999999999999999999999774 45 4568899
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+-..+.+.|++++|.+.+++..+.. +-+...+..+...|.+.|++++|.+.+++..
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999999998774 3457889999999999999999998887653
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.56 E-value=7.5e-07 Score=66.57 Aligned_cols=148 Identities=9% Similarity=0.069 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH--VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVI 86 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll 86 (164)
+...|..+...+.+.|+++.|..+|++.. .|+ ...|......+.+.|+.++|..+|++..+. .|+ ...|....
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a 397 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence 58889999999999999999999999875 343 357888888889999999999999999875 343 22222222
Q ss_pred HH-HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC--C-C----cchHHHHHHHHHhc
Q 031208 87 KA-CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-S----VVSWTTMISGLAAS 158 (164)
Q Consensus 87 ~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~----~~~~~~li~~~~~~ 158 (164)
.. +...|+.+.|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|+.... | + ...|...+.-....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 22 335899999999999887654 34578899999999999999999999998752 2 2 23787777777777
Q ss_pred CCCC
Q 031208 159 GDLD 162 (164)
Q Consensus 159 g~~~ 162 (164)
|+.+
T Consensus 477 G~~~ 480 (530)
T 2ooe_A 477 GDLA 480 (530)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 7654
No 79
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=1.8e-06 Score=59.63 Aligned_cols=146 Identities=7% Similarity=-0.102 Sum_probs=106.8
Q ss_pred HHHHHhccCCcHHHHHHHhccCC-----CcH---h-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-Cc----ccHHH
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRC-----PHV---F-TWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DK----FTFPF 84 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~-----~~~---~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~----~t~~~ 84 (164)
.+..+...|++++|.++++...+ |+. . .+..+...+...+++++|...|.+........ +. ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 36678889999999999987642 222 1 23345556677789999999999998743332 22 25888
Q ss_pred HHHHHHhccchhhHHHHHHHHHHh-----CCCCc-hHHHHHHHHHHHhcCCchhHHHHhcccCC-----CC----cchHH
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKA-----GFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRV-----RS----VVSWT 149 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~-----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~ 149 (164)
+-..|...|++++|...+++..+. +..+. ..++..+...|.+.|++++|.+.+++..+ .+ ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999999999988742 22222 34788888999999999999999987651 11 45788
Q ss_pred HHHHHHHhcCCC-CCC
Q 031208 150 TMISGLAASGDL-DAA 164 (164)
Q Consensus 150 ~li~~~~~~g~~-~~A 164 (164)
.+-..|.+.|+. ++|
T Consensus 241 ~lg~~~~~~g~~~~~A 256 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCCcHHHH
Confidence 888888888853 543
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.55 E-value=1.3e-06 Score=57.87 Aligned_cols=121 Identities=8% Similarity=-0.084 Sum_probs=97.4
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
|...+...-..+...|++++|...|++..+..-+++...+..+-.++...|++++|...+++..+.. +.+...+..+-.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566777777889999999999999999876543677777778899999999999999999998764 346778889999
Q ss_pred HHHhcCCchhHHHHhcccC--CC-Cc-------chHHHHHHHHHhcCCCCCC
Q 031208 123 LYLKCGDVDGGRKMFDKMR--VR-SV-------VSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~--~~-~~-------~~~~~li~~~~~~g~~~~A 164 (164)
.|.+.|++++|.+.|++.. .| +. ..|..+-..+...|++++|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 9999999999999999876 34 33 3466666777777776653
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.54 E-value=1.8e-06 Score=64.55 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHhc-------cCCcH-------HHHHHHhccCC---C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031208 11 NDQLLVRKLLDLCSF-------YGKTD-------HALLVFSQIRC---P-HVFTWNLMIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 11 ~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
-+...|......+.+ .|+++ .|..+|++..+ | +...|..+...+.+.|++++|..+|++..+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 356777777777765 79987 89999998652 4 578899999999999999999999999987
Q ss_pred cCCCCCc--ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH-HHHhcCCchhHHHHhcccC--CC-Ccc
Q 031208 73 NGFRPDK--FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD-LYLKCGDVDGGRKMFDKMR--VR-SVV 146 (164)
Q Consensus 73 ~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~--~~-~~~ 146 (164)
. .|+. ..|......+.+.|+.+.|.++++...+.. +.+...|..... .+...|+.++|..+|+... .| +..
T Consensus 350 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~ 426 (530)
T 2ooe_A 350 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 426 (530)
T ss_dssp S--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred c--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHH
Confidence 4 5653 478888888889999999999999987642 112222322221 2346899999999999765 33 677
Q ss_pred hHHHHHHHHHhcCCCCCC
Q 031208 147 SWTTMISGLAASGDLDAA 164 (164)
Q Consensus 147 ~~~~li~~~~~~g~~~~A 164 (164)
.|..++..+.+.|+.++|
T Consensus 427 ~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHHHhCCCHhhH
Confidence 899999988888887643
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.50 E-value=1.2e-06 Score=59.23 Aligned_cols=97 Identities=11% Similarity=-0.030 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC----------C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC----------P-HVFTWNLMIRALTIDGSSLQALLLYNLMICN------G 74 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 74 (164)
...++..+-..+...|++++|...+++... | ...++..+-..+...|++++|...+++.... +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456788888899999999999999987651 2 2456888888999999999999999998654 1
Q ss_pred CCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 75 FRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 75 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
-.| ...++..+...+...|++++|..++++..+.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 123 3457888899999999999999999988764
No 83
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=5.2e-06 Score=62.58 Aligned_cols=136 Identities=9% Similarity=0.014 Sum_probs=99.3
Q ss_pred cCCcHHHHHHHhccCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHH
Q 031208 26 YGKTDHALLVFSQIRC--P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVH 102 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 102 (164)
.|++++|...+++..+ | +...|..+-..+...|++++|.+.|++..+.. +-+...+..+-..+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4778899999988763 3 56788888899999999999999999997753 234668888899999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhc---CCCCC
Q 031208 103 GLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAAS---GDLDA 163 (164)
Q Consensus 103 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~---g~~~~ 163 (164)
++..+.. +.+...+..+-..|.+.|++++|.+.|++.. .| +...+..+...|... |+.++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence 9998775 3457788899999999999999999999875 33 567888888999888 66544
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.48 E-value=8.1e-07 Score=61.51 Aligned_cols=150 Identities=14% Similarity=-0.094 Sum_probs=112.2
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC-------Cc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-Ccc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC-------PH--VFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRP-DKF 80 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~ 80 (164)
.|......|...|++++|.+.|.+... +. ..+|+.+-..|.+.|++++|...|++..+. |-.+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577777788889999999998886642 21 467888999999999999999999987542 2111 134
Q ss_pred cHHHHHHHHHhc-cchhhHHHHHHHHHHhC--C-CC-c-hHHHHHHHHHHHhcCCchhHHHHhcccCC--CCc--c----
Q 031208 81 TFPFVIKACIAS-LAIEKGKEVHGLAVKAG--F-SR-D-MFVQSTLMDLYLKCGDVDGGRKMFDKMRV--RSV--V---- 146 (164)
Q Consensus 81 t~~~ll~~~~~~-~~~~~a~~~~~~m~~~g--~-~~-~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~--~---- 146 (164)
++..+-..|... |++++|...+++..+.. . .+ . ..++..+...|.+.|++++|...|++... |+. .
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 677888889986 99999999999877542 1 11 1 35688889999999999999999998652 221 1
Q ss_pred --hHHHHHHHHHhcCCCCCC
Q 031208 147 --SWTTMISGLAASGDLDAA 164 (164)
Q Consensus 147 --~~~~li~~~~~~g~~~~A 164 (164)
.|..+..+|...|++++|
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH
Confidence 466777788888887653
No 85
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1.4e-06 Score=57.03 Aligned_cols=114 Identities=9% Similarity=-0.089 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 125 (164)
.+..+-..+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+.. +.+...+..+-..|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3444566778899999999999877 46788889999999999999999999999998775 456778889999999
Q ss_pred hcCCchhHHHHhcccCC--C-Cc----------------chHHHHHHHHHhcCCCCCC
Q 031208 126 KCGDVDGGRKMFDKMRV--R-SV----------------VSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~~--~-~~----------------~~~~~li~~~~~~g~~~~A 164 (164)
+.|++++|.+.|++..+ | +. ..|..+-..|.+.|++++|
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 99999999999987652 2 22 6788888899999887654
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.48 E-value=6.6e-07 Score=69.08 Aligned_cols=138 Identities=12% Similarity=0.004 Sum_probs=115.2
Q ss_pred hccCCcHHHHHHHhccC-----------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 24 SFYGKTDHALLVFSQIR-----------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 24 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
...|++++|.+.+++.. ..+...+..+-..+...|++++|...|++..+.. +-+...|..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999998765 2355678888889999999999999999997742 23556788888899999
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
|++++|.+.|++..+.. +.+...+..+-..|.+.|++++ .+.|++.. .| +...|..+-.+|.+.|++++|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998875 3456788889999999999999 99998765 34 667899999999999998764
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=1.6e-06 Score=55.19 Aligned_cols=117 Identities=9% Similarity=0.049 Sum_probs=87.4
Q ss_pred HhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH-HHhccch--h
Q 031208 23 CSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA-CIASLAI--E 96 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~--~ 96 (164)
+...|+++.|...++... ..+...|..+-..+...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 345677778877777654 2466788888889999999999999999987643 2245566666667 6788888 9
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+|...+++..+.. +.+...+..+...|.+.|++++|...|++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999988764 3456778888889999999999999998765
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.46 E-value=5.1e-06 Score=55.21 Aligned_cols=148 Identities=10% Similarity=-0.044 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC--Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc----cH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC--PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF----TF 82 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~ 82 (164)
...+-.+-..+.+.|++++|...|+.+.. |+ ...+..+..++.+.|++++|...|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 33455556678888999999999998762 43 2466677788899999999999999987643 4332 22
Q ss_pred HHHHHHHHh------------------ccchhhHHHHHHHHHHhCCCCc-hHHH-----------------HHHHHHHHh
Q 031208 83 PFVIKACIA------------------SLAIEKGKEVHGLAVKAGFSRD-MFVQ-----------------STLMDLYLK 126 (164)
Q Consensus 83 ~~ll~~~~~------------------~~~~~~a~~~~~~m~~~g~~~~-~~~~-----------------~~ll~~~~~ 126 (164)
-.+-.++.. .|+.++|...++++.+.. |+ ...+ -.+-..|.+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333332 568888999998887653 33 2222 234456788
Q ss_pred cCCchhHHHHhcccC--CCCc----chHHHHHHHHHhcCCCCCC
Q 031208 127 CGDVDGGRKMFDKMR--VRSV----VSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 127 ~~~~~~a~~~~~~m~--~~~~----~~~~~li~~~~~~g~~~~A 164 (164)
.|+++.|...|+++. .|+. ..+..+..+|.+.|++++|
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 899999999998876 3432 4677888888888887654
No 89
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=5.4e-07 Score=58.37 Aligned_cols=130 Identities=11% Similarity=-0.062 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC---------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC-C--
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC---------PHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRP-D-- 78 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~-- 78 (164)
...++..+-..+...|+++.|...+++... .....+..+-..+...|++++|...+++..+. .-.+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 456677777778888888888888876542 12345667777788888888888888876432 0112 1
Q ss_pred --cccHHHHHHHHHhccchhhHHHHHHHHHHhC---CCCc--hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 79 --KFTFPFVIKACIASLAIEKGKEVHGLAVKAG---FSRD--MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 79 --~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
...+..+-..+...|++++|...+++..... -.+. ..++..+-..|.+.|++++|.+.+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2346667777888888888888888765421 1111 2345667777888888888888888777
No 90
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.44 E-value=1e-06 Score=63.03 Aligned_cols=152 Identities=11% Similarity=-0.013 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCC
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PH----VFTWNLMIRALTIDGSSLQALLLYNLMICN----GF-RPD 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~ 78 (164)
..+++.+-..|...|++++|...|++..+ ++ ..++..+-..|...|++++|...|++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 34667777888999999999999987652 22 246778888899999999999999998652 33 334
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHh----CCCCchHHHHHHHHHHHhcCC---chhHHHHhcccCCC--CcchHH
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKA----GFSRDMFVQSTLMDLYLKCGD---VDGGRKMFDKMRVR--SVVSWT 149 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~--~~~~~~ 149 (164)
..++..+-..+.+.|++++|...+++..+. +-......+..+-..|...|+ +++|..++++...+ ....+.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 343 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 567888899999999999999999987653 222223345677788888888 88999999988643 334777
Q ss_pred HHHHHHHhcCCCCCC
Q 031208 150 TMISGLAASGDLDAA 164 (164)
Q Consensus 150 ~li~~~~~~g~~~~A 164 (164)
.+-..|...|++++|
T Consensus 344 ~la~~y~~~g~~~~A 358 (383)
T 3ulq_A 344 DVAKYYHERKNFQKA 358 (383)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCHHHH
Confidence 888899999988764
No 91
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=2.2e-06 Score=53.56 Aligned_cols=116 Identities=5% Similarity=-0.063 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
..|..+-..+...|++++|...|.+..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456777778899999999999999987753 3356778888899999999999999999988775 44677888889999
Q ss_pred HhcCCchhHHHHhcccC--CC-CcchHHHHHH--HHHhcCCCC
Q 031208 125 LKCGDVDGGRKMFDKMR--VR-SVVSWTTMIS--GLAASGDLD 162 (164)
Q Consensus 125 ~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~--~~~~~g~~~ 162 (164)
.+.|++++|.+.|++.. .| +...+..+-. .+.+.|+++
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 134 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 33 3344433333 355555544
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.42 E-value=2.6e-06 Score=55.97 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=68.7
Q ss_pred HHHHhccCCcHHHHHHHhccC--CCc-HhHHHH----------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCcc
Q 031208 20 LDLCSFYGKTDHALLVFSQIR--CPH-VFTWNL----------------MIRALTIDGSSLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 80 (164)
-..+...|+++.|...|+... .|+ ...|.. +-..+.+.|++++|...|++..+.. +-+..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 345567788888888887765 342 334444 6667777888888888888876642 22455
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
.+..+-..+...|++++|...+++..+.. +.+...+..+-..|..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 67777777788888888888888777654 2344555555555433
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.42 E-value=3.4e-06 Score=58.34 Aligned_cols=129 Identities=9% Similarity=-0.115 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----Cc----HhHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCC-C---
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PH----VFTWNLMIRALTID-GSSLQALLLYNLMICNGFRP-D--- 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~--- 78 (164)
..+|+.+-..|.+.|++++|...+++..+ .+ ..+++.+-..|... |++++|...|++..+..... +
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 46788888899999999999999887652 12 35788888889986 99999999999986531111 1
Q ss_pred -cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCch------HHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 79 -KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM------FVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 79 -~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..++..+-..+.+.|++++|...+++..+....... ..+..+..++...|+++.|...|++..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 246788889999999999999999999876432222 156777788999999999999999876
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.42 E-value=5.7e-06 Score=57.85 Aligned_cols=131 Identities=9% Similarity=0.027 Sum_probs=97.0
Q ss_pred HHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 32 ALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 32 a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
|...|++.. .++..++-.+-.++...|++++|++++.+-...+-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 556666554 2455555678888999999999999999986655322 445677889999999999999999999987
Q ss_pred hCCCC-----chHHHHHHHHH--HHhcC--CchhHHHHhcccCCC--CcchHHHHHHHHHhcCCCCCC
Q 031208 108 AGFSR-----DMFVQSTLMDL--YLKCG--DVDGGRKMFDKMRVR--SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 108 ~g~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A 164 (164)
. .| +..+...|..+ ....| +..+|..+|+++.+. +..+...++.++.+.|++++|
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHH
Confidence 6 46 35566666655 33334 899999999998743 323455666688899988765
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=6.4e-06 Score=51.63 Aligned_cols=121 Identities=7% Similarity=-0.049 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
.+...+.+.+...+.++.+.++ .| +...+..+-..+.+.|++++|...|++..... +-+...|..+-.++...
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI-----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 3445555555544444333221 23 34456666667778888888888888877643 22456677777788888
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|++++|...+++..+.. +.+...|..+-.+|.+.|++++|...|+...
T Consensus 84 g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp TCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888877664 3356677777788888888888888887664
No 96
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=4.7e-06 Score=49.72 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----cccHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF--RPD----KFTFPFV 85 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~t~~~l 85 (164)
.+..+-..+...|+++.|...|+... ..+...+..+-..+...|++++|...+++...... .++ ...+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34444445555555555555555433 12334444444455555555555555555433210 111 3344444
Q ss_pred HHHHHhccchhhHHHHHHHHHHh
Q 031208 86 IKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
...+...|++++|.+.+++..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 44555555555555555554443
No 97
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=4.4e-06 Score=59.11 Aligned_cols=126 Identities=12% Similarity=-0.001 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--CCc----------------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH----------------VFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
...+..+-..+.+.|+++.|...|++.. .|+ ...|..+-.++.+.|++++|...|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566777778889999999999998765 233 4788888889999999999999999987753
Q ss_pred CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH-HHHhccc
Q 031208 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG-RKMFDKM 140 (164)
Q Consensus 75 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~m 140 (164)
+.+...|..+-.++...|++++|...+++..+.. +.+...+..+-..+.+.|+.++| ..+|+.|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356788888899999999999999999988764 34567788888888888998888 3455544
No 98
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.39 E-value=1e-05 Score=66.45 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
+..+|..+-.++.+.|++++|.+-|.+. .|...|..+..++.+.|++++|.+.|..-++.. ++....+.+.-+|++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 4667888888888999999999988654 566777788999999999999999998766544 332223347777777
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCCC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 162 (164)
.+++++...+.+ .++...|..+-+.|...|+++.|..+|... ..|..+...|.+.|+++
T Consensus 1180 l~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1180 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred hcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHH
Confidence 766664443321 233334444555555555555555555553 24444444444444443
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.37 E-value=2e-05 Score=47.64 Aligned_cols=93 Identities=5% Similarity=-0.006 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK 126 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 126 (164)
+...=..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3334444555566666666665554432 2234455555555555666666666665555443 2334455555555566
Q ss_pred cCCchhHHHHhcccC
Q 031208 127 CGDVDGGRKMFDKMR 141 (164)
Q Consensus 127 ~~~~~~a~~~~~~m~ 141 (164)
.|++++|.+.|++..
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666655443
No 100
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=2.2e-05 Score=45.74 Aligned_cols=94 Identities=11% Similarity=-0.099 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 125 (164)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44445555556666666666666655432 2234455555556666666666666666655543 223455555666666
Q ss_pred hcCCchhHHHHhcccC
Q 031208 126 KCGDVDGGRKMFDKMR 141 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~ 141 (164)
+.|++++|.+.|++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 6666666666665543
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.33 E-value=1.5e-05 Score=49.64 Aligned_cols=90 Identities=11% Similarity=-0.110 Sum_probs=43.2
Q ss_pred HHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 17 RKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 17 ~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
..+-..+.+.|++++|...|+... . .+...|..+-.++...|++++|...|++..... +-+...+..+-.++...|
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 333444445555555555555443 1 234444444445555555555555555554421 113334444455555555
Q ss_pred chhhHHHHHHHHHH
Q 031208 94 AIEKGKEVHGLAVK 107 (164)
Q Consensus 94 ~~~~a~~~~~~m~~ 107 (164)
++++|...++...+
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 102
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=3.2e-05 Score=45.03 Aligned_cols=97 Identities=12% Similarity=-0.079 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+...+...|+++.|...|+... . .+...+..+-..+...|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34567778888999999999999999875 3 467788888889999999999999999997753 2356678888899
Q ss_pred HHhccchhhHHHHHHHHHHhC
Q 031208 89 CIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g 109 (164)
+...|++++|...+++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 999999999999999887653
No 103
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.30 E-value=4.3e-06 Score=57.78 Aligned_cols=149 Identities=7% Similarity=-0.123 Sum_probs=107.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC---CCcH------hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CC--ccc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR---CPHV------FTWNLMIRALTIDGSSLQALLLYNLMICNGFR---PD--KFT 81 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~---~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~t 81 (164)
+...+..+...|++++|.+.++... ..+. ..+..+...+...|++++|...+.+....... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3445667788999999999887543 1111 22334455567788999999999998653211 11 347
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHH---hC-CCC--chHHHHHHHHHHHhcCCchhHHHHhcccCC--C-------Ccc
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVK---AG-FSR--DMFVQSTLMDLYLKCGDVDGGRKMFDKMRV--R-------SVV 146 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~---~g-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~-------~~~ 146 (164)
|+.+-..|...|++++|...+++..+ .. -.+ ...++..+...|.+.|++++|...+++... + -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88888999999999999999998873 21 111 125888889999999999999999987641 1 145
Q ss_pred hHHHHHHHHHhcCCCCCC
Q 031208 147 SWTTMISGLAASGDLDAA 164 (164)
Q Consensus 147 ~~~~li~~~~~~g~~~~A 164 (164)
+|..+-..|.+.|++++|
T Consensus 238 ~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCcHHH
Confidence 788888899999988764
No 104
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=1.8e-05 Score=48.57 Aligned_cols=89 Identities=12% Similarity=-0.017 Sum_probs=41.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...++...... +.+...+..+-.+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555544321 1133344444445555555555555555554443 2233444444455555555
Q ss_pred chhHHHHhccc
Q 031208 130 VDGGRKMFDKM 140 (164)
Q Consensus 130 ~~~a~~~~~~m 140 (164)
+++|.+.|+..
T Consensus 102 ~~~A~~~~~~a 112 (142)
T 2xcb_A 102 LDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 105
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=5.7e-05 Score=46.02 Aligned_cols=94 Identities=12% Similarity=-0.163 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--CCc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--CPH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
...+..+-..+.+.|+++.|...|+... .|+ ...|..+-..+...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 3344444444445555555555554433 232 3344444444445555555555554443321 11233344444
Q ss_pred HHHHhccchhhHHHHHHHHHH
Q 031208 87 KACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~ 107 (164)
.++...|++++|...+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444555555555544443
No 106
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=2.2e-06 Score=55.73 Aligned_cols=136 Identities=6% Similarity=-0.114 Sum_probs=74.0
Q ss_pred HHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC--------------cccHH
Q 031208 22 LCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPD--------------KFTFP 83 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~--------------~~t~~ 83 (164)
.....|+++.+.+.|+.-.. .....+..+-..+...|++++|...|++.....- .|+ ...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34445555555555553321 1233455555666677777777777777655321 110 14556
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhc
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAAS 158 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~ 158 (164)
.+-.++.+.|++++|...++...+.. +.+...+..+-.+|...|++++|...|++.. .| +...+..+...+...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 66666777777777777777766653 3345666666677777777777777776654 23 344455554444433
No 107
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=1e-05 Score=46.86 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCC--chHHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSR--DMFVQSTLMDLY 124 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~ 124 (164)
|..+-..+...|++++|...|++..+.. +.+...+..+-..+...|++++|...+++..+.. +. +...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444555555555555555554432 1233344455555555555555555555555442 12 344555555555
Q ss_pred Hhc-CCchhHHHHhcccC
Q 031208 125 LKC-GDVDGGRKMFDKMR 141 (164)
Q Consensus 125 ~~~-~~~~~a~~~~~~m~ 141 (164)
.+. |++++|.+.|+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 556 66666666555543
No 108
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.28 E-value=6.4e-06 Score=58.87 Aligned_cols=152 Identities=9% Similarity=-0.088 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCc
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PH----VFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRPDK 79 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~ 79 (164)
..+++.+-..|...|+++.|.+.|++..+ ++ ..++..+-..|...|++++|...|.+.... +-+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 45666777788999999999999887642 22 246777888899999999999999998651 223336
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCC----CCchHHHHHHHHHHHhcCC---chhHHHHhcccCCC--CcchHHH
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGF----SRDMFVQSTLMDLYLKCGD---VDGGRKMFDKMRVR--SVVSWTT 150 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~--~~~~~~~ 150 (164)
.++..+-..+.+.|++++|...+++..+..- +.....+..+-..|...++ +.+|...+++.... ....+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6788888999999999999999998876532 2234456666677777888 88889888876532 2346677
Q ss_pred HHHHHHhcCCCCCC
Q 031208 151 MISGLAASGDLDAA 164 (164)
Q Consensus 151 li~~~~~~g~~~~A 164 (164)
+-..|...|++++|
T Consensus 342 la~~y~~~g~~~~A 355 (378)
T 3q15_A 342 AAAVFESSCHFEQA 355 (378)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHH
Confidence 88888888887654
No 109
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=3.3e-05 Score=46.67 Aligned_cols=95 Identities=7% Similarity=-0.140 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+.+.|+++.|...|+... . .+...|..+-..+...|++++|...+++..+.. +.+...+..+-.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 34455555555566666666666665543 1 234455555555566666666666666554432 1233445555555
Q ss_pred HHhccchhhHHHHHHHHHH
Q 031208 89 CIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~ 107 (164)
+...|++++|...+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5566666666666555543
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.28 E-value=4.6e-05 Score=52.59 Aligned_cols=127 Identities=10% Similarity=0.018 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhHHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMI-RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+.+.|++++|...++.... |+........ ..+...++.++|...+++..... +.+...+..+-..
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~ 228 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQ 228 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 566788888899999999999999999873 6554333322 23667788889999999987753 3356788889999
Q ss_pred HHhccchhhHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+...|++++|...+.+..+..-. .+...+..+...|...|+.++|...|++
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 99999999999999999887522 2367899999999999999999887764
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.28 E-value=3.5e-05 Score=47.94 Aligned_cols=113 Identities=11% Similarity=-0.095 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKAC 89 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~ 89 (164)
..+-.+-..|.+.|++++|.+.|++.. . .+...|..+-..+.+.|++++|...|++..+. .| +...+..+-..+
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELL 109 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344456678999999999999999875 3 46788999999999999999999999999874 46 456788888999
Q ss_pred HhccchhhHHHH-HHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 90 IASLAIEKGKEV-HGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 90 ~~~~~~~~a~~~-~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
.+.|+.+++.+. ++...+.. +-+..+|...-..+.+.|+
T Consensus 110 ~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999876655 57776653 3356677766666665554
No 112
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=4.4e-05 Score=46.54 Aligned_cols=109 Identities=12% Similarity=-0.030 Sum_probs=88.2
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD----KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQ 117 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 117 (164)
.+...+..+-..+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45677888888999999999999999999874 466 5678888889999999999999999988764 3457788
Q ss_pred HHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHH
Q 031208 118 STLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMIS 153 (164)
Q Consensus 118 ~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~ 153 (164)
..+...|.+.|++++|...|++.. .| +...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 888899999999999999999875 34 3344444333
No 113
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=3e-05 Score=46.40 Aligned_cols=89 Identities=9% Similarity=-0.015 Sum_probs=40.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 3334444455555555555443321 1123344444444455555555555555444432 2223444444444555555
Q ss_pred chhHHHHhccc
Q 031208 130 VDGGRKMFDKM 140 (164)
Q Consensus 130 ~~~a~~~~~~m 140 (164)
+++|...|++.
T Consensus 88 ~~~A~~~~~~a 98 (126)
T 3upv_A 88 YASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.27 E-value=4.6e-05 Score=48.50 Aligned_cols=126 Identities=13% Similarity=-0.015 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC--CcHhHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRA-LTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIK 87 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~ 87 (164)
+...+..+-..+.+.|++++|...++.... |+...+..+... +...+...++...+++..+. .| +...+..+-.
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~ 116 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAV 116 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 466788888899999999999999999863 443333222111 22223344578888888764 45 4677888899
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
.+...|++++|...+++..+..-.+ +...+..+...|...|+.++|...|++
T Consensus 117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 9999999999999999988764222 356888999999999999999988875
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=5e-06 Score=58.82 Aligned_cols=133 Identities=14% Similarity=-0.046 Sum_probs=103.8
Q ss_pred CCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----------------cccHHHHHH
Q 031208 27 GKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD----------------KFTFPFVIK 87 (164)
Q Consensus 27 ~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~t~~~ll~ 87 (164)
++++.|...|+... .| +...|..+-..+.+.|++++|...|++..+.. |+ ...|..+-.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34445555554433 23 45678888888999999999999999997753 44 378888999
Q ss_pred HHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~ 162 (164)
++.+.|++++|...+++..+.. +.+...+..+-.+|.+.|++++|...|++.. .| +...+..+-..+.+.|+.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875 4567888999999999999999999999875 34 5567777777777666544
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=5.4e-05 Score=45.68 Aligned_cols=100 Identities=10% Similarity=-0.087 Sum_probs=82.7
Q ss_pred CCCC-HHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 9 LSND-QLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 9 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
+.|+ ...+...=..+.+.|++++|.+.|++.. . .+...|..+-.++.+.|++++|...|++..+.. +.+...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 3443 3455566678899999999999999865 3 467889999999999999999999999997753 334568888
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
+-.++...|++++|.+.+++..+..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
No 117
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=1.5e-05 Score=46.16 Aligned_cols=97 Identities=13% Similarity=-0.095 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CcccHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP--DKFTFPFVI 86 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll 86 (164)
+...+..+-..+.+.|++++|...|++.. ..+...|..+-..+...|++++|...|++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 45667778888999999999999999865 3467788888899999999999999999998753 22 466788888
Q ss_pred HHHHhc-cchhhHHHHHHHHHHhC
Q 031208 87 KACIAS-LAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 87 ~~~~~~-~~~~~a~~~~~~m~~~g 109 (164)
..+.+. |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999987664
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=2.2e-05 Score=49.21 Aligned_cols=100 Identities=16% Similarity=0.016 Sum_probs=83.9
Q ss_pred CCC-CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 9 LSN-DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 9 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
+.| +...+..+-..+.+.|++++|...|+... .| +...|..+-.++...|++++|...|++..+.. +-+...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 344 34456666778889999999999999876 34 67889999999999999999999999998753 235678888
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
+-.++.+.|++++|...++...+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998875
No 119
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=2.9e-05 Score=48.79 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+.+.|++++|...|++.. . .+...|..+-.++.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34556666667777777777777777654 2 355667777777777777777777777776543 2235566677777
Q ss_pred HHhccchhhHHHHHHHHHHh
Q 031208 89 CIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~ 108 (164)
+...|++++|...+++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777776654
No 120
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.23 E-value=7.8e-06 Score=58.23 Aligned_cols=150 Identities=12% Similarity=-0.038 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PH----VFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRPD- 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~- 78 (164)
..++..+-..+...|++++|...+++..+ ++ ..++..+-..+...|++++|...+++.... +-.+.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 34677777889999999999999987652 22 237888888999999999999999997542 11111
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHhC----CCC-chHHHHHHHHHHHhcCCchhHHHHhcccCC-------C--C
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAG----FSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-------R--S 144 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-------~--~ 144 (164)
..++..+...+...|++++|...+++..+.. -.+ ...++..+-..|.+.|++++|.+.|++..+ + .
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 346 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE 346 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcch
Confidence 4577888899999999999999999876532 111 155777888899999999999999887641 1 2
Q ss_pred cchHHHHHHHHHhcCCCC
Q 031208 145 VVSWTTMISGLAASGDLD 162 (164)
Q Consensus 145 ~~~~~~li~~~~~~g~~~ 162 (164)
..++..+...|...|+..
T Consensus 347 ~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 347 LTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHhhHhH
Confidence 457777778887777654
No 121
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.22 E-value=1.1e-05 Score=66.41 Aligned_cols=134 Identities=11% Similarity=0.095 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
-|...|..+...+.+.|++++|.+++.... .++....+.+..+|++.+++++...+. . .|+...|..+-..
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 456778889999999999999999997644 234334445888999998888644332 2 3555677778899
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHhcCCCC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 162 (164)
|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++.. +..+|.-+-.+|...|++.
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhHHH
Confidence 99999999999999884 488999999999999999999998775 3456655555555444443
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.21 E-value=6.3e-06 Score=57.42 Aligned_cols=148 Identities=11% Similarity=-0.073 Sum_probs=86.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC-----Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-Ccc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC-----PH----VFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRP-DKF 80 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~ 80 (164)
.|......|...|++++|...|.+... .+ ..+|+.+-..|.+.|++++|...|++.... |-.+ -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455556666777777777777665431 11 245666677777777777777777765432 1111 123
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHhC----CCC-chHHHHHHHHHHHhcCCchhHHHHhcccCC-----CC----cc
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKAG----FSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-----RS----VV 146 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~----~~ 146 (164)
++..+-..|.. |++++|...+++..... -.+ ...++..+-..|.+.|++++|.+.|++... ++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 55566666666 77777777777655421 101 134566667777777777777777776541 11 12
Q ss_pred hHHHHHHHHHhcCCCCC
Q 031208 147 SWTTMISGLAASGDLDA 163 (164)
Q Consensus 147 ~~~~li~~~~~~g~~~~ 163 (164)
.+..+...+...|++++
T Consensus 197 ~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHH
Confidence 44455555555566543
No 123
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.20 E-value=1.1e-06 Score=63.01 Aligned_cols=151 Identities=12% Similarity=0.024 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC---------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-Cc
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC---------PHVFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRP-DK 79 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 79 (164)
.++..+-..+...|++++|...+++... .....+..+-..+...|++++|...+++.... +-.| ..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 4677788888899999999998887642 23356788888899999999999999987543 1112 23
Q ss_pred ccHHHHHHHHHhccc-----------------hhhHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhcCCchhHHHHh
Q 031208 80 FTFPFVIKACIASLA-----------------IEKGKEVHGLAVKA----GFSR-DMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
..+..+-..+...|+ +++|...+++..+. +-.+ ....+..+...|...|++++|.+.|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 477788888899999 89998888876542 2212 2347777888899999999999999
Q ss_pred cccCC-----CC----cchHHHHHHHHHhcCCCCCC
Q 031208 138 DKMRV-----RS----VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 138 ~~m~~-----~~----~~~~~~li~~~~~~g~~~~A 164 (164)
++... ++ ..+|..+...|...|++++|
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 87652 11 23778888888888887654
No 124
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=3.6e-05 Score=45.72 Aligned_cols=112 Identities=11% Similarity=-0.015 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC--CCc----hHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF--SRD----MFVQS 118 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~ 118 (164)
..|..+-..+...|++++|...|.+..... +.+...+..+...+...|++++|...+++.....- .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 457777888999999999999999997753 34566788888999999999999999998876531 122 67888
Q ss_pred HHHHHHHhcCCchhHHHHhcccC--CCCcchHHHHHHHHHh
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTMISGLAA 157 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~ 157 (164)
.+...|.+.|++++|.+.|+... .|+...+..+-.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88999999999999999999875 4555555555544443
No 125
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=5.1e-05 Score=45.82 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=84.3
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 42 PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
.+...|..+-..+...|++++|...|.+..... +.+...+..+-..+...|++++|...++...+.. +.+...+..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 466788888889999999999999999987753 3356788888999999999999999999998875 34677888999
Q ss_pred HHHHhcCCchhHHHHhcccC
Q 031208 122 DLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~ 141 (164)
..|.+.|++++|...|++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998775
No 126
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.17 E-value=3.1e-06 Score=60.34 Aligned_cols=152 Identities=13% Similarity=-0.021 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhccCC--------------------cHHHHHHHhccCC-----C----cHhHHHHHHHHHHhcCChhHH
Q 031208 13 QLLVRKLLDLCSFYGK--------------------TDHALLVFSQIRC-----P----HVFTWNLMIRALTIDGSSLQA 63 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a 63 (164)
..++..+-..+...|+ ++.|.+.++.... + ...++..+-..+...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 3467777778888999 8888888876541 1 234678888889999999999
Q ss_pred HHHHHHHHHcCC-CCC----cccHHHHHHHHHhccchhhHHHHHHHHHHh----CCCCc-hHHHHHHHHHHHhcCCchhH
Q 031208 64 LLLYNLMICNGF-RPD----KFTFPFVIKACIASLAIEKGKEVHGLAVKA----GFSRD-MFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 64 ~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a 133 (164)
...+++..+... .++ ..++..+...+...|++++|...+++.... +-.+. ..++..+...|.+.|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 999999854311 122 237888889999999999999999987643 21111 45778888999999999999
Q ss_pred HHHhcccCC-----CC----cchHHHHHHHHHhcCCCCCC
Q 031208 134 RKMFDKMRV-----RS----VVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 134 ~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A 164 (164)
.+.|++... .+ ..++..+-..|...|++++|
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999987652 12 45788888888888887654
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.15 E-value=4.6e-05 Score=47.30 Aligned_cols=97 Identities=7% Similarity=-0.079 Sum_probs=81.9
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
+...+..+-..+...|++++|...|++..... +.+...|..+-.++...|++++|...+++..... +.+...+..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 44567777788899999999999999997753 3366677888889999999999999999998775 345678888899
Q ss_pred HHHhcCCchhHHHHhcccC
Q 031208 123 LYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~ 141 (164)
+|...|++++|.+.|+...
T Consensus 98 ~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999775
No 128
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.15 E-value=3.6e-06 Score=58.13 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC---------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC---------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-RPD---- 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~---- 78 (164)
...+..+-..+...|+++.|...+++... .....+..+-..+...|++++|...+.+..+..- .++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 35677888889999999999999887541 1245677888889999999999999998754211 112
Q ss_pred cccHHHHHHHHHhccc--------------------hhhHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhcCCchhH
Q 031208 79 KFTFPFVIKACIASLA--------------------IEKGKEVHGLAVKA----GFSR-DMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a 133 (164)
..++..+...+...|+ +++|...+++.... +-.+ ....+..+...|...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2377778888888999 88898888776532 2122 234677788888999999999
Q ss_pred HHHhcccCC-----C----CcchHHHHHHHHHhcCCCCCC
Q 031208 134 RKMFDKMRV-----R----SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 134 ~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A 164 (164)
.+.+++..+ + ...++..+...|...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999887651 1 123777788888888877653
No 129
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.14 E-value=3.2e-05 Score=52.25 Aligned_cols=127 Identities=8% Similarity=-0.097 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC--C---c-HhHHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCC
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC--P---H-VFTWNLMIRALTI--------DGSSLQALLLYNLMICNGFRPD 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~-~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~ 78 (164)
...+..+-..+.+.|+++.|...|+...+ | + ...+..+-.++.. .|++++|...|++..... |+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cC
Confidence 56677778889999999999999998762 3 2 3455666667777 999999999999997753 43
Q ss_pred -cccH-----------------HHHHHHHHhccchhhHHHHHHHHHHhCCC-C-chHHHHHHHHHHHhc----------C
Q 031208 79 -KFTF-----------------PFVIKACIASLAIEKGKEVHGLAVKAGFS-R-DMFVQSTLMDLYLKC----------G 128 (164)
Q Consensus 79 -~~t~-----------------~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~----------~ 128 (164)
.... -.+-..+.+.|++++|...+++..+..-. + ....+..+..+|.+. |
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 3333 34577889999999999999999876411 1 345677777788766 8
Q ss_pred CchhHHHHhcccC
Q 031208 129 DVDGGRKMFDKMR 141 (164)
Q Consensus 129 ~~~~a~~~~~~m~ 141 (164)
++++|...|+++.
T Consensus 210 ~~~~A~~~~~~~~ 222 (261)
T 3qky_A 210 RYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8899999999886
No 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=1.7e-05 Score=58.75 Aligned_cols=117 Identities=10% Similarity=-0.126 Sum_probs=90.4
Q ss_pred HHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchh
Q 031208 20 LDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIE 96 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 96 (164)
-..+.+.|++++|.+.|++.. . .+...|..+-.++.+.|++++|.+.+++..+.. +-+...+..+-.++.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 345667899999999999875 3 457889999999999999999999999998753 235568888899999999999
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHH--HHhcCCchhHHHHhc
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDL--YLKCGDVDGGRKMFD 138 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 138 (164)
+|.+.+++..+.. +.+...+..+-.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988764 2233455555444 888899999999998
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.00012 Score=43.59 Aligned_cols=95 Identities=14% Similarity=-0.102 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
...|..+-..+.+.|++++|...|++.. . .+...|..+-.++.+.|++++|...|++..+.. +-+...|..+-.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 4556677778899999999999999875 3 467889999999999999999999999997753 23456788889999
Q ss_pred HhccchhhHHHHHHHHHHh
Q 031208 90 IASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~ 108 (164)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 132
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.13 E-value=2.7e-06 Score=58.80 Aligned_cols=152 Identities=13% Similarity=0.003 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhccCC--------------------cHHHHHHHhccCC-----C----cHhHHHHHHHHHHhcCChhHH
Q 031208 13 QLLVRKLLDLCSFYGK--------------------TDHALLVFSQIRC-----P----HVFTWNLMIRALTIDGSSLQA 63 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a 63 (164)
..++..+-..+...|+ ++.|...+++... + ....+..+-..+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3366777778888888 8888888876531 1 234677788888999999999
Q ss_pred HHHHHHHHHcCC-CCC----cccHHHHHHHHHhccchhhHHHHHHHHHHhC----CCC-chHHHHHHHHHHHhcCCchhH
Q 031208 64 LLLYNLMICNGF-RPD----KFTFPFVIKACIASLAIEKGKEVHGLAVKAG----FSR-DMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 64 ~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~ll~~~~~~~~~~~a 133 (164)
...+++..+... .++ ..++..+...+...|++++|...+++..... ..+ ...++..+...|...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 999998754211 111 2367788888999999999999998776431 111 145677788889999999999
Q ss_pred HHHhcccCC-----C----CcchHHHHHHHHHhcCCCCCC
Q 031208 134 RKMFDKMRV-----R----SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 134 ~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A 164 (164)
...+++... . ...++..+...|.+.|++++|
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 999887641 1 134777888888888887654
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.13 E-value=1.7e-05 Score=51.21 Aligned_cols=141 Identities=9% Similarity=-0.061 Sum_probs=102.8
Q ss_pred hccCCcHHHHH---HHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCC-CcccHHHHHHHHHhccch
Q 031208 24 SFYGKTDHALL---VFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMIC----NGFRP-DKFTFPFVIKACIASLAI 95 (164)
Q Consensus 24 ~~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~t~~~ll~~~~~~~~~ 95 (164)
...|++++|.+ ++..-+......+..+-..+...|++++|...+++... .+..| ....+..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45789999999 66553334567888888899999999999999999855 22222 345778888899999999
Q ss_pred hhHHHHHHHHHHh----CCCC--chHHHHHHHHHHHhcCCchhHHHHhcccCC-----CC----cchHHHHHHHHHhcCC
Q 031208 96 EKGKEVHGLAVKA----GFSR--DMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-----RS----VVSWTTMISGLAASGD 160 (164)
Q Consensus 96 ~~a~~~~~~m~~~----g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~ 160 (164)
++|...+++.... +-.| ....+..+-..+...|++++|.+.+++... .+ ..++..+-..|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999877653 2122 245677888899999999999999887641 12 2346777888888888
Q ss_pred CCCC
Q 031208 161 LDAA 164 (164)
Q Consensus 161 ~~~A 164 (164)
+++|
T Consensus 163 ~~~A 166 (203)
T 3gw4_A 163 LLEA 166 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.13 E-value=6.1e-05 Score=46.20 Aligned_cols=95 Identities=13% Similarity=-0.145 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
...+..+-..+.+.|++++|...|+... .| +...|..+-.++...|++++|...|++..... +-+...+..+-.++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3445555667889999999999999875 34 67788888889999999999999999997753 33556778888999
Q ss_pred HhccchhhHHHHHHHHHHh
Q 031208 90 IASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~ 108 (164)
...|++++|...++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 135
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.13 E-value=1.7e-06 Score=62.04 Aligned_cols=149 Identities=10% Similarity=-0.014 Sum_probs=112.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC--CCc-H----hHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CcccHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR--CPH-V----FTWNLMIRALTIDGSSLQALLLYNLMICN----GFRP-DKFTFP 83 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~--~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~ 83 (164)
+..+-..+...|++++|...|++.. .|+ . ..|..+-..+...|++++|...+++..+. +-.| ....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3445557788999999999999875 233 2 46888888899999999999999987542 2122 345778
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHh----CCC-CchHHHHHHHHHHHhcCC-----------------chhHHHHhcccC
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKA----GFS-RDMFVQSTLMDLYLKCGD-----------------VDGGRKMFDKMR 141 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~ 141 (164)
.+-..+...|++++|...+++..+. +-. .....+..+-..|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 8889999999999999999887654 211 234577888889999999 999988887654
Q ss_pred C-------C--CcchHHHHHHHHHhcCCCCCC
Q 031208 142 V-------R--SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 142 ~-------~--~~~~~~~li~~~~~~g~~~~A 164 (164)
+ + ...+|..+-..|...|++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 242 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 1 1 234788888888888887654
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.12 E-value=6.3e-05 Score=48.72 Aligned_cols=125 Identities=8% Similarity=-0.069 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--C-c----------------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--P-H----------------VFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
..+..+-..+.+.|++++|...|++... | + ...|..+-.++.+.|++++|...+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455666778889999999999997652 1 2 2678888888999999999999999997752
Q ss_pred CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHH-HHhccc
Q 031208 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGR-KMFDKM 140 (164)
Q Consensus 75 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m 140 (164)
+.+...+..+-.++...|++++|...+++..+.. +.+...+..+...+.+.++.+++. ..|..|
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888899999999999999999988764 335667777777777777776666 444444
No 137
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.12 E-value=5.9e-05 Score=49.42 Aligned_cols=129 Identities=13% Similarity=0.033 Sum_probs=90.7
Q ss_pred HHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccc
Q 031208 19 LLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLA 94 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~ 94 (164)
+-..+.+.|++++|...|++.. .| +...|..+-..+...|++++|...|++..+. .| +...+..+-..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 7778889999999999999876 34 6788999999999999999999999999875 35 45677777777766554
Q ss_pred h--hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcchHHHH
Q 031208 95 I--EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVVSWTTM 151 (164)
Q Consensus 95 ~--~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~l 151 (164)
. ..+...+.... ...|....+...-.++...|++++|...|++.. .|+......+
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3 33444444432 222323333444555667899999999999876 4555444443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.10 E-value=4.6e-05 Score=52.59 Aligned_cols=128 Identities=5% Similarity=-0.184 Sum_probs=94.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--cccHHHHHHHHHh
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD--KFTFPFVIKACIA 91 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~ 91 (164)
.-.....+...|++++|.++|+... .|+....-.+-..+.+.+++++|+..|+...... .|. ...+..+-.++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3445667888999999999999987 4544344444457899999999999998554321 111 2256667788999
Q ss_pred ccchhhHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCchhHHHHhcccC--CCC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRD--MFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS 144 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~ 144 (164)
.|++++|...+++.......|. .......-.++.+.|+.++|..+|+++. .|+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 9999999999999874433253 3355666777889999999999999886 555
No 139
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.08 E-value=0.00017 Score=51.08 Aligned_cols=149 Identities=10% Similarity=-0.018 Sum_probs=103.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC----------Cc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C--Ccc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC----------PH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFR--P--DKF 80 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~----------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~ 80 (164)
+..+-..+...|+++.|...+++... |. ...+..+-..+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45556678889999999998887641 22 234566777888999999999999998653221 1 124
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc-hHHHH-----HHHHHHHhcCCchhHHHHhcccCCCC-------cch
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQS-----TLMDLYLKCGDVDGGRKMFDKMRVRS-------VVS 147 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~ 147 (164)
++..+...+...|++++|...+++.....-.++ ...+. .....+...|+.++|...+++...++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 567778888999999999999998875422221 11122 23345778999999999998876432 124
Q ss_pred HHHHHHHHHhcCCCCCC
Q 031208 148 WTTMISGLAASGDLDAA 164 (164)
Q Consensus 148 ~~~li~~~~~~g~~~~A 164 (164)
+..+...+...|++++|
T Consensus 256 ~~~la~~~~~~g~~~~A 272 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPA 272 (373)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHH
Confidence 56677788888876643
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=0.00014 Score=45.52 Aligned_cols=97 Identities=18% Similarity=0.036 Sum_probs=83.7
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
+...|..+-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667778888999999999999999997753 2366788889999999999999999999998875 345788899999
Q ss_pred HHHhcCCchhHHHHhcccC
Q 031208 123 LYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~ 141 (164)
.|.+.|++++|.+.|++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 9999999999999999875
No 141
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.07 E-value=8.4e-05 Score=53.04 Aligned_cols=148 Identities=9% Similarity=-0.048 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----Cc-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC---
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PH-----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFR-PD--- 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~--- 78 (164)
..++..+-..+...|+++.|...+++..+ ++ ..+++.+-..|...|++++|...|.+.....-. ++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 45677777788889999988888876541 22 346777778889999999999999887542111 11
Q ss_pred -cccHHHHHHHHHhccchhhHHHHHHHHHHh----CC-CCchHHHHHHHHHHHhcCCchhHHHHhcccCC-------C-C
Q 031208 79 -KFTFPFVIKACIASLAIEKGKEVHGLAVKA----GF-SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV-------R-S 144 (164)
Q Consensus 79 -~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-------~-~ 144 (164)
..++..+-..|...|++++|...+++..+. +. +....++..+-..|.+.|++++|.+.+++... + .
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 146778888899999999999999887762 33 33466788888899999999999998887641 1 1
Q ss_pred cchHHHHHHHHHhcCC
Q 031208 145 VVSWTTMISGLAASGD 160 (164)
Q Consensus 145 ~~~~~~li~~~~~~g~ 160 (164)
...+..+-..|...|+
T Consensus 303 ~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 1234555555555554
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.8e-05 Score=58.66 Aligned_cols=109 Identities=7% Similarity=-0.020 Sum_probs=88.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
.+.+.|++++|.+.|++..+. .| +...|..+-.++.+.|++++|.+.+++..+.. +.+...+..+-.+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 456789999999999999775 35 46788899999999999999999999998764 345778889999999999999
Q ss_pred hHHHHhcccC--CC-CcchHHHHHHH--HHhcCCCCCC
Q 031208 132 GGRKMFDKMR--VR-SVVSWTTMISG--LAASGDLDAA 164 (164)
Q Consensus 132 ~a~~~~~~m~--~~-~~~~~~~li~~--~~~~g~~~~A 164 (164)
+|.+.|++.. .| +...+..+-.+ +.+.|++++|
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 33 44566666555 7777877766
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.06 E-value=0.00011 Score=50.67 Aligned_cols=151 Identities=7% Similarity=0.073 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHh---HHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCc----c
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVF---TWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDK----F 80 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~ 80 (164)
..|+..+...+...+.-.- ..++..-...+.. .+...+..+...|++++|...+++..... ..|+. .
T Consensus 42 ~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 4566666666655544221 2233333333333 33344677899999999999999987632 12221 1
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHhCCC-Cc----hHHHHHHHHHHHhcCCchhHHHHhcccCC------C----Cc
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFS-RD----MFVQSTLMDLYLKCGDVDGGRKMFDKMRV------R----SV 145 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~------~----~~ 145 (164)
.+..+...+...+++++|...+++..+.... ++ ..+++.+-..|...|++++|...|++..+ . ..
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 2334566667778999999999999874322 22 23688899999999999999999987751 1 23
Q ss_pred chHHHHHHHHHhcCCCCCC
Q 031208 146 VSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A 164 (164)
.+|..+-..|.+.|++++|
T Consensus 197 ~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 4788888999999988764
No 144
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=0.00031 Score=41.73 Aligned_cols=84 Identities=10% Similarity=-0.046 Sum_probs=37.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc---hHHHHHHHHHHHh
Q 031208 54 LTIDGSSLQALLLYNLMICNGFRPDK----FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD---MFVQSTLMDLYLK 126 (164)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~ 126 (164)
+...|++++|...|++..+.. |+. ..+..+-.++.+.|++++|...++...+.. +.+ ...+..+-.+|.+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHH
Confidence 344455555555555544321 211 133344444455555555555555544432 111 2334444444555
Q ss_pred cCCchhHHHHhccc
Q 031208 127 CGDVDGGRKMFDKM 140 (164)
Q Consensus 127 ~~~~~~a~~~~~~m 140 (164)
.|++++|...|++.
T Consensus 89 ~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 89 EGKNTEAQQTLQQV 102 (129)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555444
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=5.3e-06 Score=49.29 Aligned_cols=82 Identities=10% Similarity=-0.065 Sum_probs=45.8
Q ss_pred cCCcHHHHHHHhccCC-----C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 26 YGKTDHALLVFSQIRC-----P-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
.|++++|...|++..+ | +...|..+-..+...|++++|...|++..+.. +-+...+..+-.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4556666666665432 2 22445556666666677777777776665542 123445555666666666777766
Q ss_pred HHHHHHHHh
Q 031208 100 EVHGLAVKA 108 (164)
Q Consensus 100 ~~~~~m~~~ 108 (164)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
No 146
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=4.5e-05 Score=46.89 Aligned_cols=128 Identities=13% Similarity=0.002 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-C
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PH----VFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRP-D 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 78 (164)
..++..+-..+...|++++|...+++... ++ ..++..+-..+...|++++|...+++.... +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34567777788899999999999987652 22 146778888899999999999999997542 1111 1
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKA----GFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
...+..+-..+...|++++|...+++..+. +..+ ....+..+...|...|++++|.+.+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 346777788889999999999999877643 2111 2456777888899999999999988764
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.02 E-value=8.1e-05 Score=44.53 Aligned_cols=87 Identities=7% Similarity=-0.080 Sum_probs=44.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
..+.+.|++++|...|++..+.. +-+...|..+-.++...|+.++|...+++..+.. +.+...+..+...|.+.|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34455555555555555554431 1133444445555555555555555555555443 223444555555555555555
Q ss_pred hHHHHhccc
Q 031208 132 GGRKMFDKM 140 (164)
Q Consensus 132 ~a~~~~~~m 140 (164)
+|...|++.
T Consensus 103 ~A~~~~~~a 111 (121)
T 1hxi_A 103 AALASLRAW 111 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 148
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.98 E-value=0.00015 Score=56.16 Aligned_cols=151 Identities=10% Similarity=0.045 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCC-------------C------------cHhHHHHHHHHHHhcCChhHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-------------P------------HVFTWNLMIRALTIDGSSLQAL 64 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------~------------~~~~~~~li~~~~~~~~~~~a~ 64 (164)
+.+...|-..+...-+.|+++.|.++|+.... | ....|...+....+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 44566677778888889999999999988752 3 1236777787778888999999
Q ss_pred HHHHHHHHc-CCCCCcccHHHHHHHHHhc-cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC
Q 031208 65 LLYNLMICN-GFRPDKFTFPFVIKACIAS-LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 65 ~~~~~m~~~-~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
.+|.+..+. +. +....|......-.+. ++.+.|.++|+...+. ++-+...+...++.....|+.+.|..+|+....
T Consensus 455 ~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 455 KIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999998765 21 1222332222222233 4588999999988776 344566777888888888999999999998663
Q ss_pred C------CcchHHHHHHHHHhcCCCC
Q 031208 143 R------SVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 143 ~------~~~~~~~li~~~~~~g~~~ 162 (164)
. ....|...+.--.+.|+.+
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2 2356777777666666653
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.97 E-value=0.00022 Score=49.07 Aligned_cols=123 Identities=9% Similarity=-0.066 Sum_probs=92.6
Q ss_pred HHHHHHhccCCcHHHHHHHhccCC-------Cc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC-----cccH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRC-------PH--VFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPD-----KFTF 82 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~t~ 82 (164)
.+...+...|++++|...+++... +. ..+|+.+-..|...|++++|...|++.... ...|+ ..++
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 344566778899999999876531 22 347888899999999999999999998621 11233 1578
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHhC----CCC-chHHHHHHHHHHHhcCCchhH-HHHhccc
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKAG----FSR-DMFVQSTLMDLYLKCGDVDGG-RKMFDKM 140 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~ll~~~~~~~~~~~a-~~~~~~m 140 (164)
..+-..|...|++++|...+++..+.. ... -..+|..+-..|.+.|+.++| ...+++.
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 888999999999999999999876532 111 256788888999999999999 6666653
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.97 E-value=0.00034 Score=44.24 Aligned_cols=98 Identities=6% Similarity=0.023 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHH-HHhcCCh--hHHHHHHHHHHHcCCCCCcccHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRA-LTIDGSS--LQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
.+...|..+-..+...|+++.|...|+...+ .+...+..+-.. +...|++ ++|...|++..+.. +-+...+..
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 120 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALML 120 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3567888888899999999999999998762 466677777777 7789998 99999999997753 224567778
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
+...+...|++++|...+++..+..
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8899999999999999999988764
No 151
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=6.6e-05 Score=43.49 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=67.1
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc-------hH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-------MF 115 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-------~~ 115 (164)
+...|..+-..+...|++++|...|++..+.. +.+...+..+-.++.+.|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556666777778888888888888876642 234566777777888888888888888877654 343 44
Q ss_pred HHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 116 VQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+..+-.++...|+.+.|.+.|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55566667777777777777777664
No 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.94 E-value=0.00011 Score=52.32 Aligned_cols=129 Identities=11% Similarity=-0.112 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC-----Cc-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC-----PH-----VFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRP- 77 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p- 77 (164)
..++..+-..|...|+++.|...+++... ++ ..+++.+-..|...|++++|.+.|.+..+. +-.+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45666777788899999888888776541 11 346777888889999999999999887542 1111
Q ss_pred CcccHHHHHHHHHhccchhhHHHHHHHHHHh----CCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 78 DKFTFPFVIKACIASLAIEKGKEVHGLAVKA----GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 78 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
...++..+-..+...|++++|...+++.... +-+....++..+-..|.+.|++++|...+++..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1246777888889999999999999887761 323346677888889999999999999888654
No 153
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.94 E-value=0.00032 Score=51.15 Aligned_cols=152 Identities=6% Similarity=-0.104 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHh-------------------cCChhHHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTI-------------------DGSSLQALLLYNL 69 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~-------------------~~~~~~a~~~~~~ 69 (164)
+..++..+-..+.+.|+++.|...+++.. .| +..++..+-..|.. .+..+.|...+++
T Consensus 246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34445555556666666666666666543 23 23333333222221 1123445555555
Q ss_pred HHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchH--HHHHHHH-HHHhcCCchhHHHHhcccC-----
Q 031208 70 MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF--VQSTLMD-LYLKCGDVDGGRKMFDKMR----- 141 (164)
Q Consensus 70 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~-~~~~~~~~~~a~~~~~~m~----- 141 (164)
..... +.+...+..+-..+...|++++|...+++..+....+... .+..+.. .+...|+.++|...|++..
T Consensus 326 a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 326 ADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 54332 2345567778888899999999999999888765433321 2222222 2346788888887776532
Q ss_pred ---------------------CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 142 ---------------------VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 142 ---------------------~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
.| +..+|+.+-..|...|++++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 12 566888888888888888876
No 154
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.93 E-value=0.00025 Score=52.45 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=49.3
Q ss_pred cCCcHHHHHHHhccC-CCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh----ccchh
Q 031208 26 YGKTDHALLVFSQIR-CPHVFTWNLMIRALTI----DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA----SLAIE 96 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~ 96 (164)
.++++.|...|++.. ..+...+..|-..|.. .+++++|...|++..+.| +...+..+-..|.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555433 2334444444444444 455555555555554433 22233333344444 44555
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCchhHHHHhccc
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLK----CGDVDGGRKMFDKM 140 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m 140 (164)
+|..++++..+.| +...+..|-..|.. .++.++|.++|++.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5555555544433 22233333333433 34444454444433
No 155
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.93 E-value=6.2e-05 Score=52.36 Aligned_cols=128 Identities=6% Similarity=-0.088 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccC-------CCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-C
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIR-------CPH--VFTWNLMIRALTIDGSSLQALLLYNLMICN----GFRP-D 78 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 78 (164)
..+|+.+-..|.+.|++++|...|++.. .+. ..++..+-..|.. |++++|...|++.... +-.+ .
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 3467777788889999999988887653 222 3567777778888 9999999999987542 1111 1
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHh----CCCCc-hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKA----GFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..++..+-..+.+.|++++|...+++..+. +..+. ...+..+...+...|+++.|...|++..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 356778889999999999999999988753 22122 2256666777888899999999998765
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00021 Score=43.01 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=39.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhC--CCCc----hHHHHHHHH
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRD----MFVQSTLMD 122 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~~ll~ 122 (164)
+=..+.+.|++++|+..|++..+. .| +...|..+-.+|.+.|++++|.+.+++..+.. ..++ ..+|..+-.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334444555555555555554432 22 23344444455555555555555555443321 0010 123334444
Q ss_pred HHHhcCCchhHHHHhcc
Q 031208 123 LYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~ 139 (164)
.|...|++++|.+.|++
T Consensus 92 ~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 45555555555555544
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00044 Score=41.59 Aligned_cols=103 Identities=9% Similarity=-0.014 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC--C-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC----cccHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR--C-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG--FRPD----KFTFPF 84 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~t~~~ 84 (164)
..+..+=..+.+.|++++|...|++.. . .+...|..+-.+|.+.|++++|+..+++..+.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345566678889999999999999865 3 467788889999999999999999999986532 1111 124556
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
+-.++...|++++|.+.+++.... .|+..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 667788889999999999988765 45554443
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=4.9e-05 Score=56.00 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 80 FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 80 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
..|..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|.+.|++++|...|++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444445555555555555555544432 223444444445555555555555555443
No 159
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.86 E-value=0.00058 Score=50.46 Aligned_cols=121 Identities=9% Similarity=-0.047 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhc----cCCcHHHHHHHhccCC-CcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 14 LLVRKLLDLCSF----YGKTDHALLVFSQIRC-PHVFTWNLMIRALTI----DGSSLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 14 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
..+..+-..|.. .++.++|...|++..+ .+...+..|-..|.. .+++++|...|++....| +...+..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 152 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQS 152 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334444444444 5566666666665432 234444444444444 456666666666655443 2233334
Q ss_pred HHHHHHh----ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCchhHHHHhccc
Q 031208 85 VIKACIA----SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLK----CGDVDGGRKMFDKM 140 (164)
Q Consensus 85 ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m 140 (164)
+-..|.. .++.++|.+.++...+.| +...+..|-..|.. .++.++|.++|++.
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 4444443 445555555555555443 33344444444444 45555555555543
No 160
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00027 Score=50.69 Aligned_cols=119 Identities=7% Similarity=-0.118 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC-------------------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC-------------------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 75 (164)
.+..+-..+.+.|++++|...|++..+ .+...|..+-.++.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 355666677888899888888886543 234567777788888889999998888887643
Q ss_pred CCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHH
Q 031208 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 76 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (164)
+-+...+..+-.++...|++++|...+++..+.. +.+...+..+-..+.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245677777888888888999988888887664 2355666666677766666666544
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=2.5e-05 Score=48.06 Aligned_cols=120 Identities=13% Similarity=0.012 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----cccHHHHHHHHHhccchhhHHHHHHHHHHhC----CCC-ch
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFR-PD----KFTFPFVIKACIASLAIEKGKEVHGLAVKAG----FSR-DM 114 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~ 114 (164)
.++..+-..+...|++++|...+++..+..-. ++ ...+..+-..+...|++++|...+++..+.. -.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677777889999999999999997543211 11 1467788889999999999999999876531 111 14
Q ss_pred HHHHHHHHHHHhcCCchhHHHHhcccCC-----C----CcchHHHHHHHHHhcCCCCCC
Q 031208 115 FVQSTLMDLYLKCGDVDGGRKMFDKMRV-----R----SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 115 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A 164 (164)
..+..+-..|...|++++|.+.+++... . ...++..+-..|...|++++|
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 5677778889999999999999887641 1 234677788888888887653
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.82 E-value=0.00095 Score=39.56 Aligned_cols=90 Identities=9% Similarity=-0.089 Sum_probs=72.8
Q ss_pred HHHHHHhccCCcHHHHHHHhccC--CCcH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----cccHHHHHH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIR--CPHV----FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD----KFTFPFVIK 87 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~--~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~ 87 (164)
.+-..+.+.|++++|...|+... .|+. ..+..+-..+.+.|++++|...|++..... |+ ...+..+-.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 34556778999999999999875 3433 367777788999999999999999997753 43 345677888
Q ss_pred HHHhccchhhHHHHHHHHHHhC
Q 031208 88 ACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~g 109 (164)
++...|++++|...+++..+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999998764
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.00026 Score=52.17 Aligned_cols=126 Identities=9% Similarity=0.010 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCC--C-c---------------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRC--P-H---------------VFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
...+..+-..+.+.|+++.|...|++..+ | + ...|..+-.++.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566677788899999999999997652 3 2 5788888999999999999999999997753
Q ss_pred CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHH-Hhccc
Q 031208 75 FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK-MFDKM 140 (164)
Q Consensus 75 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~m 140 (164)
+.+...|..+-.+|...|++++|...+++..+.. +.+...+..+-..+.+.++.+++.+ ++..|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888999999999999999999988653 2345678888888888888877653 44444
No 164
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.80 E-value=0.00094 Score=44.10 Aligned_cols=124 Identities=9% Similarity=-0.107 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC--CCcHh----HHHHHHHHHH------------------hcCChhHHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVF----TWNLMIRALT------------------IDGSSLQALLLYNL 69 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~----~~~~li~~~~------------------~~~~~~~a~~~~~~ 69 (164)
..+..+-.++.+.|++++|...|++.. .|+.. .+-.+-.++. ..|++++|...|++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 567777889999999999999999875 24321 2222222332 25789999999999
Q ss_pred HHHcCCCCCcc-cH-----------------HHHHHHHHhccchhhHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhc
Q 031208 70 MICNGFRPDKF-TF-----------------PFVIKACIASLAIEKGKEVHGLAVKAGFSRD----MFVQSTLMDLYLKC 127 (164)
Q Consensus 70 m~~~~~~p~~~-t~-----------------~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~ 127 (164)
..+. .|+.. .. -.+-..+.+.|++++|...++++.+.. |+ ...+..+..+|.+.
T Consensus 122 ~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 122 LVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHc
Confidence 9875 35432 22 134456788999999999999998764 33 35678889999999
Q ss_pred CCchhHHHHhcccC
Q 031208 128 GDVDGGRKMFDKMR 141 (164)
Q Consensus 128 ~~~~~a~~~~~~m~ 141 (164)
|+.++|.+.++.+.
T Consensus 198 g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 198 QMNAQAEKVAKIIA 211 (225)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99999999998765
No 165
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.78 E-value=0.00035 Score=49.50 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=102.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC-----CcH----hHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--CC-
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC-----PHV----FTWNLMIRALTIDGSSLQALLLYNLMICN----GFR--PD- 78 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--p~- 78 (164)
+++.+-..+...|+++.|...+++... ++. .++..+-..+...|++++|...+++.... +-. |.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 345555677889999999999987652 222 23556667788999999999999987542 222 22
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHhCCC--C--chHHHHHHHHHHHhcCCchhHHHHhcccC----CCCc-chHH
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS--R--DMFVQSTLMDLYLKCGDVDGGRKMFDKMR----VRSV-VSWT 149 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~-~~~~ 149 (164)
...+..+-..+...|++++|...+++.....-. + ....+..+...+...|++++|...+++.. .++. ..|.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 235566778889999999999999988765321 1 23467778888999999999999998754 2222 2222
Q ss_pred H-----HHHHHHhcCCCCC
Q 031208 150 T-----MISGLAASGDLDA 163 (164)
Q Consensus 150 ~-----li~~~~~~g~~~~ 163 (164)
. ....+...|++++
T Consensus 215 ~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHH
Confidence 2 2234667777654
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.77 E-value=0.00092 Score=43.84 Aligned_cols=143 Identities=13% Similarity=-0.037 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC-CcHhHHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCcccHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDG----SSLQALLLYNLMICNGFRPDKFTFPFV 85 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~t~~~l 85 (164)
-++..+..+=..|...+++++|...|++..+ .+...+..|=..|.. + ++++|...|++..+.| +...+..|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 3566777777788889999999999998763 456666666666666 6 8999999999987654 44456666
Q ss_pred HHHHHh----ccchhhHHHHHHHHHHhCCC-CchHHHHHHHHHHHh----cCCchhHHHHhcccC-C-CCcchHHHHHHH
Q 031208 86 IKACIA----SLAIEKGKEVHGLAVKAGFS-RDMFVQSTLMDLYLK----CGDVDGGRKMFDKMR-V-RSVVSWTTMISG 154 (164)
Q Consensus 86 l~~~~~----~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~-~-~~~~~~~~li~~ 154 (164)
-..|.. .+++++|..++++..+.|.. .+...+..|-..|.. .++.++|..+|++.. . .+...+..|-..
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMM 171 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666766 77899999999988776521 126677778888887 788999999998764 2 455666666666
Q ss_pred HHh
Q 031208 155 LAA 157 (164)
Q Consensus 155 ~~~ 157 (164)
|..
T Consensus 172 y~~ 174 (212)
T 3rjv_A 172 FQQ 174 (212)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 167
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00014 Score=41.97 Aligned_cols=85 Identities=8% Similarity=-0.080 Sum_probs=67.8
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCC-------cchHH
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRS-------VVSWT 149 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~-------~~~~~ 149 (164)
...+..+-..+...|++++|...+++..+.. +.+...+..+-.+|.+.|++++|.+.|++.. .|+ ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456677888999999999999999998774 3467788889999999999999999999865 343 44666
Q ss_pred HHHHHHHhcCCCCCC
Q 031208 150 TMISGLAASGDLDAA 164 (164)
Q Consensus 150 ~li~~~~~~g~~~~A 164 (164)
.+-.++...|++++|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 677777777777654
No 168
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.77 E-value=0.00039 Score=47.76 Aligned_cols=96 Identities=8% Similarity=-0.109 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
+...+..+-..+.+.|++++|...|+... .| +...|..+-..+.+.|++++|...+++..+.. +-+...+..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 45667777888999999999999999875 34 67888888999999999999999999987642 2345678888899
Q ss_pred HHhccchhhHHHHHHHHHHh
Q 031208 89 CIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~ 108 (164)
+...|++++|...+++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.76 E-value=0.00039 Score=41.47 Aligned_cols=91 Identities=10% Similarity=-0.047 Sum_probs=75.9
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHh
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP-DKFTFPFVIKACIA 91 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~ 91 (164)
+-.+-..+.+.|++++|...|+... .| +...|..+-.++...|++++|...|++..+. .| +...+..+-.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 4445567888999999999999876 34 6778888888999999999999999998775 35 45678888899999
Q ss_pred ccchhhHHHHHHHHHHh
Q 031208 92 SLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~ 108 (164)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988753
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00016 Score=53.91 Aligned_cols=119 Identities=13% Similarity=-0.022 Sum_probs=91.8
Q ss_pred HhccCCcHHHHHHHhccC----------CCcH-hHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCC----cccHHH
Q 031208 23 CSFYGKTDHALLVFSQIR----------CPHV-FTWNLMIRALTIDGSSLQALLLYNLMIC---NGFRPD----KFTFPF 84 (164)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~----------~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~----~~t~~~ 84 (164)
+...|++++|..++++.. .|++ .+++.|...|...|++++|..++++... .-+.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 457899999998887654 1433 5799999999999999999999999743 223333 357889
Q ss_pred HHHHHHhccchhhHHHHHHHHHHh-----CC-CCc-hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKA-----GF-SRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
|-..|...|++++|..++++..+- |- .|+ ..+.+.+-.++...+.+..|..++..+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876542 31 233 3455677788888899999999998876
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00065 Score=42.34 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCCC---------------------cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRCP---------------------HVFTWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
.+...=..+.+.|+++.|...|+..... +...|..+-.++.+.|++++|...+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444555666666666666553310 1234555555556666666666666665543
Q ss_pred CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 74 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
. +.+...|..+-.++...|++++|...++...+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 2 223445555556666666666666666655544
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.70 E-value=0.0007 Score=46.48 Aligned_cols=62 Identities=8% Similarity=-0.174 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
+...|..+-..+.+.|++++|...++...+ .+...+..+-.++...|++++|...|++..+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567778888888899999999999988663 35677888888899999999999999887653
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.68 E-value=0.00031 Score=41.40 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=74.1
Q ss_pred hcCChhHHHHHHHHHHHcC--CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 56 IDGSSLQALLLYNLMICNG--FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
..|++++|...|++..+.+ -+-+...+..+-..+...|++++|...+++..+.. +-+...+..+-.+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998754 12245678888899999999999999999998875 34577888889999999999999
Q ss_pred HHHhcccC--CC---CcchHHHHHHHHHh
Q 031208 134 RKMFDKMR--VR---SVVSWTTMISGLAA 157 (164)
Q Consensus 134 ~~~~~~m~--~~---~~~~~~~li~~~~~ 157 (164)
...|++.. .| +...|...+..|.+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99998765 22 33445555555543
No 174
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.65 E-value=0.0024 Score=46.54 Aligned_cols=128 Identities=11% Similarity=-0.008 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC-----------CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR-----------CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICN-----G 74 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 74 (164)
....||.+-..+...|+.++|.+.|++.. .| ...+|+.+-..|...|++++|...+++..+- +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35678888888899999999999887642 12 3568888999999999999999999887531 1
Q ss_pred -CCCC-cccHHHHHHHHHhc--cchhhHHHHHHHHHHhCCCCchHHHHHHHHH---HHhcCCchhHHHHhccc
Q 031208 75 -FRPD-KFTFPFVIKACIAS--LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL---YLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 75 -~~p~-~~t~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~m 140 (164)
..++ ..++..+-.++... +++++|...|++..+.. +.+...+..+... +...++.++|.+.+++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1121 23444444444443 46889999998887654 2233344433333 33456666677666544
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.64 E-value=0.00023 Score=50.34 Aligned_cols=125 Identities=11% Similarity=-0.050 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccC--CCcHh------------------HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIR--CPHVF------------------TWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
..+..+-..+.+.|+++.|...|++.. .|+.. .|..+-.++.+.|++++|...+++..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555667777888888888888754 34332 5666677777778888888888777654
Q ss_pred CCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHH-HHhcCCchhHHHHhcccC
Q 031208 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDL-YLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 74 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~-~~~~~~~~~a~~~~~~m~ 141 (164)
. +.+...|..+-.++...|++++|...+++..+. .|+ ...+..+... ....+..+.+..+|..|.
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 224556777777777788888888777776543 232 3333333333 223345556666666654
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.00012 Score=52.59 Aligned_cols=115 Identities=5% Similarity=-0.099 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc--------------CCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICN--------------GFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
..+..+-..+.+.|++++|...|++..+. ...| +...|..+-.++.+.|++++|...+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34677778889999999999999998651 0223 45678888899999999999999999998754
Q ss_pred CCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCC
Q 031208 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGD 160 (164)
Q Consensus 110 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~ 160 (164)
+.+...+..+-.+|.+.|++++|.+.|++.. .| +...+..+-..+...++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3457788888999999999999999999875 34 45566666665555443
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.53 E-value=0.0027 Score=39.49 Aligned_cols=94 Identities=6% Similarity=-0.020 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc-------CC---------CC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICN-------GF---------RP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~---------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
+...-..+.+.|++++|...|.+.... .- .| +...|..+-.++.+.|++++|...++...+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344556778899999999999998653 00 12 23578888899999999999999999998875
Q ss_pred CCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 110 FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 110 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+.+...|..+-.+|...|++++|...|+...
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 4567888999999999999999999999875
No 178
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.52 E-value=0.0028 Score=34.86 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
..|..+-..+...|++++|...|++..+.. +.+...+..+-..+.+.|++++|...+++..+.. +.+...+..+-..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555556666777777777777665532 2234455566666667777777777776666543 22333444444433
No 179
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.44 E-value=0.0061 Score=39.84 Aligned_cols=127 Identities=9% Similarity=-0.108 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHhccC----CcHHHHHHHhccCC-CcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCccc
Q 031208 12 DQLLVRKLLDLCSFYG----KTDHALLVFSQIRC-PHVFTWNLMIRALTI----DGSSLQALLLYNLMICNGFR-PDKFT 81 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~t 81 (164)
++..+..+=..|.. + ++++|.++|++..+ .+...+..|-..|.. .+++++|...|++..+.|.. .+...
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 45556666666766 6 89999999998764 466677777777766 78999999999999876532 01556
Q ss_pred HHHHHHHHHh----ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-C-----CchhHHHHhcccC
Q 031208 82 FPFVIKACIA----SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC-G-----DVDGGRKMFDKMR 141 (164)
Q Consensus 82 ~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~m~ 141 (164)
+..|-..|.. .++.++|..++++..+.+ .+...+..|-..|.+. | +.++|.++|+...
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 7777777877 789999999999988762 3344566666677653 3 8999999998765
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.0013 Score=38.45 Aligned_cols=64 Identities=5% Similarity=-0.079 Sum_probs=40.8
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
+...|..+-..+...|++++|...|++..+.. +.+...|..+-.++...|+.++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666777777777777777765532 22344566666667777777777777766654
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.38 E-value=0.0013 Score=46.47 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc------------------cHHHHHHHHHhccchhhHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF------------------TFPFVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
..+..+-..+.+.|++++|...|++.... .|+.. .|..+-.++.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44666677788899999999999997653 34432 67788889999999999999999998
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 107 KAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 107 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+.. +.+...|..+-.+|...|++++|...|++..
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 764 3467889999999999999999999999886
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0011 Score=47.80 Aligned_cols=127 Identities=9% Similarity=-0.053 Sum_probs=92.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC-----CcH---h-HHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-cc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC-----PHV---F-TWNLMIRALTIDGSSLQALLLYNLMIC----NGFRPD-KF 80 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~---~-~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~ 80 (164)
.+..+...|.+.|++++|.+++..... ++. . +.+.+=..+...|+.+.+..++.+... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 467788899999999999999987752 221 1 222222333456889999999988743 233332 34
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHh--CCC--C-chHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKA--GFS--R-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
++..+...+...|++++|..++++.... +.. + ....+..+...|...|++++|..++++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 6778889999999999999999987653 221 1 24578888999999999999999987654
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.35 E-value=0.0011 Score=38.00 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=55.1
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhC-CCCchHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG-FSRDMFVQSTLM 121 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll 121 (164)
+...|..+-..+...|++++|...|++..+.. +-+...|..+-.++...|++++|.+.+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45567777777888888888888888876643 2245567777788888888888888887766432 123444444444
Q ss_pred HHHHhc
Q 031208 122 DLYLKC 127 (164)
Q Consensus 122 ~~~~~~ 127 (164)
..+.+.
T Consensus 85 ~~l~~~ 90 (100)
T 3ma5_A 85 DAKLKA 90 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444433
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.31 E-value=0.0025 Score=35.10 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=62.6
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHH
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGL 155 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~ 155 (164)
...+..+-..+...|++++|...+++..+.. +.+...+..+-..|.+.|++++|...|++.. .| +...+..+-..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788899999999999999998765 3456788888999999999999999998765 33 555666666666
Q ss_pred HhcC
Q 031208 156 AASG 159 (164)
Q Consensus 156 ~~~g 159 (164)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
No 185
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.28 E-value=0.0022 Score=49.74 Aligned_cols=150 Identities=5% Similarity=0.010 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHhccCCcHHHH-HHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC---------CCC
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHAL-LVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNG---------FRP 77 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p 77 (164)
-+...|-.....+...|+.+.|. +++++.. .| +...|-..+...-+.|+++.|.++|++..... -.|
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 35666777777777788888996 9998765 34 55567777778888999999999999987631 014
Q ss_pred C------------cccHHHHHHHHHhccchhhHHHHHHHHHHh-C-CCCchHHHHHHHHHHHh-cCCchhHHHHhcccCC
Q 031208 78 D------------KFTFPFVIKACIASLAIEKGKEVHGLAVKA-G-FSRDMFVQSTLMDLYLK-CGDVDGGRKMFDKMRV 142 (164)
Q Consensus 78 ~------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g-~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~ 142 (164)
+ ...|...++...+.|+.+.|.++|+...+. + ..+...+..+.+. .+ .++.+.|..+|+...+
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHH
Confidence 2 235777788888889999999999998876 3 2233344334443 33 3558999999997762
Q ss_pred ---CCcchHHHHHHHHHhcCCCC
Q 031208 143 ---RSVVSWTTMISGLAASGDLD 162 (164)
Q Consensus 143 ---~~~~~~~~li~~~~~~g~~~ 162 (164)
.+...|...+.-....|+.+
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HCCCchHHHHHHHHHHHhCCCHH
Confidence 24556666666666666543
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.26 E-value=0.0069 Score=38.10 Aligned_cols=93 Identities=10% Similarity=-0.075 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------c-----ccHHHHHHHHHhccchhhHHHHHHHHHHh-----
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPD--------K-----FTFPFVIKACIASLAIEKGKEVHGLAVKA----- 108 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----- 108 (164)
+...-..+.+.|++++|...|++..+. .|+ . ..|..+-.++.+.|++++|...++...+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 334445567778888888888887653 233 1 26777788888889999999988888765
Q ss_pred CCCCc-hHHH----HHHHHHHHhcCCchhHHHHhcccC
Q 031208 109 GFSRD-MFVQ----STLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 109 g~~~~-~~~~----~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.+.|+ ...| ...-.++...|++++|...|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 12453 5567 777888999999999999998764
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.17 E-value=0.0055 Score=34.90 Aligned_cols=60 Identities=18% Similarity=0.079 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 12 DQLLVRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
+...+..+-..+.+.|++++|...|++.. .| +...|..+-.+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555556666666666666666554 22 34455566666666666666666666554
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.10 E-value=0.0038 Score=36.32 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.|...|++..+.. +.+...+..+-..+...|++++|...+++..+.. +.+...|..+-..|.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555554432 2234456666666677777777777777666553 2345566666666777777777777776554
No 189
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.10 E-value=0.032 Score=38.96 Aligned_cols=136 Identities=5% Similarity=-0.045 Sum_probs=98.0
Q ss_pred CCcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc------h
Q 031208 27 GKTDHALLVFSQIR---CPHVFTWNLMIRALTIDGSSL--QALLLYNLMICNGFRPDKFTFPFVIKACIASLA------I 95 (164)
Q Consensus 27 ~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~------~ 95 (164)
++++++.++++.+. ..|-..|+.---.+.+.+.++ ++++.++++.+.. +-|-..|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 78888988888876 357778888777788888888 9999999998754 2355566666666666665 7
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchh-HHHHhcccCC------CCcchHHHHHHHHHhcCCCCCC
Q 031208 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG-GRKMFDKMRV------RSVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A 164 (164)
+++.+.++...... +-|...|+-+-..+.+.|+... +..+..+..+ ++...+..+...|.+.|+.++|
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 77888888877765 4577888888888888777444 4456655432 2557788888888877776543
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00064 Score=49.02 Aligned_cols=144 Identities=6% Similarity=-0.148 Sum_probs=100.0
Q ss_pred HHHhccCCcHHHHHHHhccCC--Cc------------------HhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCc
Q 031208 21 DLCSFYGKTDHALLVFSQIRC--PH------------------VFTWNLMIRALTIDGSSLQALLLYNLMICN-GFRPDK 79 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~--~~------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~ 79 (164)
..+.+.|++++|.+.|....+ |+ ...+..+...|...|++++|.+.+.+.... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456778999999999987641 11 124677889999999999999999987542 112222
Q ss_pred c----cHHHHHHHHHhccchhhHHHHHHHHHH----hCCCC-chHHHHHHHHHHHhcCCchhHHHHhcccC--------C
Q 031208 80 F----TFPFVIKACIASLAIEKGKEVHGLAVK----AGFSR-DMFVQSTLMDLYLKCGDVDGGRKMFDKMR--------V 142 (164)
Q Consensus 80 ~----t~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--------~ 142 (164)
. ..+.+-..+...|+.+.+..++.+... .+..+ ...++..+...|...|++++|..++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 122222233445788899988887654 23233 24577888999999999999999988654 1
Q ss_pred C-CcchHHHHHHHHHhcCCCCCC
Q 031208 143 R-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 143 ~-~~~~~~~li~~~~~~g~~~~A 164 (164)
+ ...+|..+...|...|++++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHH
Confidence 1 235788889999999887654
No 191
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0032 Score=46.18 Aligned_cols=62 Identities=8% Similarity=-0.073 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCC---C-cccHHHHHHHHHhccchhhHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMIC---NGFRP---D-KFTFPFVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p---~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
.+++.|..+|...|++++|..++++... .-+.| + ..+++.|-..|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3456666666666666666666665532 11112 1 1345555566666666666666555443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.95 E-value=0.0074 Score=44.98 Aligned_cols=89 Identities=11% Similarity=-0.015 Sum_probs=69.9
Q ss_pred HHHhcCChhHHHHHHHHHHH---cCCCCC----cccHHHHHHHHHhccchhhHHHHHHHHHHh-----C-CCCc-hHHHH
Q 031208 53 ALTIDGSSLQALLLYNLMIC---NGFRPD----KFTFPFVIKACIASLAIEKGKEVHGLAVKA-----G-FSRD-MFVQS 118 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~---~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~~~~ 118 (164)
.+...|++++|..++++... .-+.|+ ..+++.|...|...|++++|..++++...- | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999988743 223343 357899999999999999999999977642 2 2333 56788
Q ss_pred HHHHHHHhcCCchhHHHHhcccC
Q 031208 119 TLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 119 ~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.|-..|...|++++|..++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999888654
No 193
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.87 E-value=0.04 Score=38.02 Aligned_cols=109 Identities=6% Similarity=-0.206 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCC-Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc--ccHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRC-PH----VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK--FTFP 83 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~ 83 (164)
|+....-.+-..+.+.+++++|...|+.... |+ ...+-.+=.++...|++++|+..|++.......|.. ....
T Consensus 133 p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 133 SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 4333444445588899999999999997653 32 235666777889999999999999999854432542 2445
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
..-.++.+.|+.++|..+|+++.... |+...+..|.
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~ 248 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence 56678889999999999999999874 5544444443
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.84 E-value=0.0098 Score=43.65 Aligned_cols=135 Identities=13% Similarity=-0.011 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccC---CcHHHHHHHhccC---CCcHhHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 15 LVRKLLDLCSFYG---KTDHALLVFSQIR---CPHVFTWNLMIRALTID----GSSLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 15 ~~~~li~~~~~~~---~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
.+..+-..|.+.| +.++|.+.|+... .++...+..+-..|... +++++|...|++.. .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 4555555555666 6666666666543 23333333344444333 46677777777665 22 2333333
Q ss_pred HHHH-H--HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-----CchhHHHHhcccCCCCcchHHHHHHHHH
Q 031208 85 VIKA-C--IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG-----DVDGGRKMFDKMRVRSVVSWTTMISGLA 156 (164)
Q Consensus 85 ll~~-~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~li~~~~ 156 (164)
+-.. + ...++.++|..++++..+.| +...+..|-..|. .| +.++|.++|++....+...+..|-..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4333 2 34667777777777776665 3344445555554 44 7777777777766224445555555554
Q ss_pred h
Q 031208 157 A 157 (164)
Q Consensus 157 ~ 157 (164)
.
T Consensus 330 ~ 330 (452)
T 3e4b_A 330 R 330 (452)
T ss_dssp T
T ss_pred C
Confidence 4
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0085 Score=43.93 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred hcCChhHHHHHHHHHHH---cCCCCCc----ccHHHHHHHHHhccchhhHHHHHHHHHHh-----C-CCCc-hHHHHHHH
Q 031208 56 IDGSSLQALLLYNLMIC---NGFRPDK----FTFPFVIKACIASLAIEKGKEVHGLAVKA-----G-FSRD-MFVQSTLM 121 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~---~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~~~~~ll 121 (164)
..|++++|..++++... .-+.|+. .+++.|..+|...|++++|..++++...- | -.|+ ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999998743 3344442 67899999999999999999999987642 2 2343 46788999
Q ss_pred HHHHhcCCchhHHHHhcccC
Q 031208 122 DLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~ 141 (164)
..|...|++++|..++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999988754
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.81 E-value=0.087 Score=38.61 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHHHHHHcC
Q 031208 46 TWNLMIRALTIDG---SSLQALLLYNLMICNG 74 (164)
Q Consensus 46 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~~ 74 (164)
.+..|-..|.+.| +.++|+..|++..+.|
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 4444444444444 4444444444444433
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.80 E-value=0.008 Score=37.80 Aligned_cols=94 Identities=14% Similarity=-0.114 Sum_probs=73.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC--Cc--------H-----hHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC--PH--------V-----FTWNLMIRALTIDGSSLQALLLYNLMICN-----G 74 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 74 (164)
.+...-..+.+.|++++|...|++..+ |+ . ..|+.+-.++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 344455667789999999999997652 33 2 38888889999999999999999998763 2
Q ss_pred CCCCc-ccH----HHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 75 FRPDK-FTF----PFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 75 ~~p~~-~t~----~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
+.|+. ..| ...-.++...|++++|...|++..+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 25754 456 67778889999999999999988753
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.78 E-value=0.013 Score=42.99 Aligned_cols=92 Identities=14% Similarity=0.013 Sum_probs=71.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc---CCCCCc----ccHHHHHHHHHhccchhhHHHHHHHHHHh-----C-CCCc-hH
Q 031208 50 MIRALTIDGSSLQALLLYNLMICN---GFRPDK----FTFPFVIKACIASLAIEKGKEVHGLAVKA-----G-FSRD-MF 115 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~ 115 (164)
.+..+.+.|++++|..++++.... -+.|+. .+++.+...|...|++++|..++++...- | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355677889999999999998642 233432 57888999999999999999999977642 2 2343 46
Q ss_pred HHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 116 VQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+++.|-..|...|++++|..++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78889999999999999999888764
No 199
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.04 Score=42.95 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=57.7
Q ss_pred cCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHH
Q 031208 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 105 (164)
.|+++.|.++.+.+ .+...|..+-..+.+.++++.|.+.|.++.. |..+...+...++.+...++-+..
T Consensus 665 ~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 665 VGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444333 3445677777777777777777777776642 344555555555555555554444
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC
Q 031208 106 VKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 106 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
...| -++....+|.+.|++++|.+++.++.+
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4443 234455566667777777777777663
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.013 Score=42.85 Aligned_cols=89 Identities=13% Similarity=-0.067 Sum_probs=69.5
Q ss_pred HHHHHhccCCcHHHHHHHhccCC----------Cc-HhHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCC----cc
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRC----------PH-VFTWNLMIRALTIDGSSLQALLLYNLMIC---NGFRPD----KF 80 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~----------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~----~~ 80 (164)
.+..+.+.|++++|..++++... |+ ..+++.+...|...|++++|..++++... .-+.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 35566778999999999876531 22 35789999999999999999999998753 212232 25
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHH
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (164)
+++.|-..|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788899999999999999999987654
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.66 E-value=0.019 Score=32.14 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=40.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKF-TFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
..+.+.|++++|...|++..+.. +.+.. .+..+-.++...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 35567788888888888876642 22344 66677777788888888888888877664
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.32 E-value=0.017 Score=36.24 Aligned_cols=93 Identities=9% Similarity=-0.108 Sum_probs=52.1
Q ss_pred ccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCCh----------hHHHHHHHHHHHcCCCCC-cccHHHHHHHHH
Q 031208 25 FYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSS----------LQALLLYNLMICNGFRPD-KFTFPFVIKACI 90 (164)
Q Consensus 25 ~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~ 90 (164)
+.+++++|.+.++... .| +...|+.+=.++...+++ ++|...|++..+. .|+ ...|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 4455666666666554 23 555555555555555543 4666666666553 343 345666666666
Q ss_pred hcc-----------chhhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 91 ASL-----------AIEKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 91 ~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
..| ++++|.+.|++..+. .|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 553 666677766666654 35544444333
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.30 E-value=0.019 Score=34.83 Aligned_cols=107 Identities=9% Similarity=-0.064 Sum_probs=70.8
Q ss_pred CCcHHHHHHHhccCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh----ccchhhHHHH
Q 031208 27 GKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA----SLAIEKGKEV 101 (164)
Q Consensus 27 ~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~ 101 (164)
+++++|.+.|++..+ .+.... +=..|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 456677777776542 222333 4444555566777888888887664 34455566666666 6788888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHh----cCCchhHHHHhcccC
Q 031208 102 HGLAVKAGFSRDMFVQSTLMDLYLK----CGDVDGGRKMFDKMR 141 (164)
Q Consensus 102 ~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~ 141 (164)
++...+.| +...+..|-..|.. .++.++|.++|+...
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 88887765 34556666677777 788888888887654
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.95 E-value=0.17 Score=37.73 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc-chhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 125 (164)
|-..+....+.+..+.|..+|.+. +.. .++...|......-...+ +.+.|..+|+...+.- +-+...+...++...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 333344444566788888888888 211 112222322111112223 6888999999887653 223445666778778
Q ss_pred hcCCchhHHHHhcccCCCCcchHHHHHH
Q 031208 126 KCGDVDGGRKMFDKMRVRSVVSWTTMIS 153 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~li~ 153 (164)
+.|+.+.|..+|+.... ....|...+.
T Consensus 366 ~~~~~~~aR~l~er~~k-~~~lw~~~~~ 392 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK-TSRMWDSMIE 392 (493)
T ss_dssp HHTCHHHHHHHHHHSCC-BHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 88999999999988742 3334444443
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.95 E-value=0.078 Score=29.48 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=47.2
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhCCCCchH-HHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 85 VIKACIASLAIEKGKEVHGLAVKAGFSRDMF-VQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
....+.+.|++++|...+++..+.. +.+.. .+..+-.+|.+.|++++|.+.|++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556788999999999999998774 33556 88888899999999999999999875
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.89 E-value=0.13 Score=38.98 Aligned_cols=149 Identities=8% Similarity=-0.068 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhccCC----------cHHHHHHHhccC--C-CcHhHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCC
Q 031208 13 QLLVRKLLDLCSFYGK----------TDHALLVFSQIR--C-PHVFTWNLMIRALTIDG--SSLQALLLYNLMICNGFRP 77 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~----------~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p 77 (164)
..+|+.-=..+.+.|+ ++++.+.++.+. . .+-.+|+.--..+.+.+ +++++++.++++.+.. +-
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~ 141 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER 141 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cc
Confidence 3455554444555555 788888888876 2 46678888888888888 6799999999998753 33
Q ss_pred CcccHHHHHHHHHhcc-chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--------------CCchhHHHHhcccC-
Q 031208 78 DKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC--------------GDVDGGRKMFDKMR- 141 (164)
Q Consensus 78 ~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~m~- 141 (164)
|-..|+.--..+.+.| ..+++.+.++++.+.. .-+...|+..-..+.+. +.++++.+.+++..
T Consensus 142 N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 5667777777778888 7888888888887654 34677788777666653 44577777776554
Q ss_pred -CC-CcchHHHHHHHHHhcCCCCC
Q 031208 142 -VR-SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 142 -~~-~~~~~~~li~~~~~~g~~~~ 163 (164)
.| |...|+.+--.+.+.++.++
T Consensus 221 ~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 221 TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred hCCCCccHHHHHHHHHhcCCCccc
Confidence 34 77888888777777776543
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.81 E-value=0.19 Score=36.04 Aligned_cols=142 Identities=6% Similarity=-0.002 Sum_probs=93.1
Q ss_pred hhcCCCCHHHHHHHHHHHhc-----cCCcHHHHHHHhccC--CCc-HhHHHHHHHHHH----hcC-ChhHHHH---HHHH
Q 031208 6 RYGLSNDQLLVRKLLDLCSF-----YGKTDHALLVFSQIR--CPH-VFTWNLMIRALT----IDG-SSLQALL---LYNL 69 (164)
Q Consensus 6 ~~g~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~----~~~-~~~~a~~---~~~~ 69 (164)
..+.+.+...|...+.+... ..+..+|..+|++.. .|+ ...|..+-.+|. ... ....... -+..
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34567788889998876654 234578999999876 464 334443333332 111 1111111 1121
Q ss_pred HHH-cCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC--CCCcc
Q 031208 70 MIC-NGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR--VRSVV 146 (164)
Q Consensus 70 m~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~ 146 (164)
... ..-+.+...|..+...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|++.. +|...
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 111 1224566777777777777899999999999999886 787777777788889999999999998765 56555
Q ss_pred hHH
Q 031208 147 SWT 149 (164)
Q Consensus 147 ~~~ 149 (164)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
No 208
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.74 E-value=0.31 Score=34.00 Aligned_cols=145 Identities=7% Similarity=0.019 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccC--CcHHHHHHHhccC--CC-cHhHHHHHHHHH----Hhc---CChhHHHHHHHHHHHcCCCCCcccH
Q 031208 15 LVRKLLDLCSFYG--KTDHALLVFSQIR--CP-HVFTWNLMIRAL----TID---GSSLQALLLYNLMICNGFRPDKFTF 82 (164)
Q Consensus 15 ~~~~li~~~~~~~--~~~~a~~~~~~~~--~~-~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~p~~~t~ 82 (164)
+|+.--..+...| +++++.++++.+. .| +..+|+.--..+ ... +++++++.+++++.+.. +-|-..|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3444444444455 6666666666554 22 223343322222 333 56666666666665532 2244555
Q ss_pred HHHHHHHHhccchh--hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC------chhHHHHhcccC--C-CCcchHHHH
Q 031208 83 PFVIKACIASLAIE--KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD------VDGGRKMFDKMR--V-RSVVSWTTM 151 (164)
Q Consensus 83 ~~ll~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~m~--~-~~~~~~~~l 151 (164)
+.--..+.+.+..+ ++.++++.+.+.. .-|-..|+.--....+.+. ++++.+.+++.. . .|...|+.+
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 55555555566665 6666666666554 2344555544444444444 555666665443 2 256666666
Q ss_pred HHHHHhcCCC
Q 031208 152 ISGLAASGDL 161 (164)
Q Consensus 152 i~~~~~~g~~ 161 (164)
-..+.+.|+.
T Consensus 227 ~~ll~~~~~~ 236 (306)
T 3dra_A 227 LGIHERFDRS 236 (306)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhcCCC
Confidence 6666655553
No 209
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.66 E-value=0.36 Score=34.33 Aligned_cols=100 Identities=6% Similarity=-0.063 Sum_probs=45.6
Q ss_pred CcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc--
Q 031208 28 KTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSL--------QALLLYNLMICNGFRPDKFTFPFVIKACIASLA-- 94 (164)
Q Consensus 28 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-- 94 (164)
+++++.++++.+.+ .|-..|+.---.+.+.+.++ ++++.+.++.+.. +-|...|+-.-..+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 45555555555442 23444444333333333333 5555555554432 2233344444444444443
Q ss_pred -----hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 95 -----IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 95 -----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
++++.+.+.+..... +-|...|+-+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344555555444433 2345555555444444443
No 210
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.24 Score=31.67 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=55.2
Q ss_pred HHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHH
Q 031208 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGK 99 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 99 (164)
++...+.|+++.|.++-+.+ .+...|..|-......|+++-|.+.|.+.. .|..+.--|.-.|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHHHH
Confidence 34455677777777776554 345567777777777777777766666553 2344444445555554444
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 100 EVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 100 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
.+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4433333333 1233333344444444444444433
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.57 E-value=0.12 Score=32.23 Aligned_cols=78 Identities=14% Similarity=-0.055 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc---chhhHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCchhHHHH
Q 031208 62 QALLLYNLMICNGFRPDKFTFPFVIKACIASL---AIEKGKEVHGLAVKAGFSR--DMFVQSTLMDLYLKCGDVDGGRKM 136 (164)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 136 (164)
.+.+-|.+....|. ++..+--.+-.++++++ +++++..++++..+.. .| +....-.|--+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444555444443 45555555666677766 5667888888777765 24 223333334455788888888888
Q ss_pred hcccC
Q 031208 137 FDKMR 141 (164)
Q Consensus 137 ~~~m~ 141 (164)
++.+.
T Consensus 94 ~~~lL 98 (152)
T 1pc2_A 94 VRGLL 98 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.54 E-value=0.00086 Score=49.80 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 13 QLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 13 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
+.+|..|-.+..+.+++.+|.+-|-+ ..|...|..+|.+..+.|.+++-+..+...++..-.|.+. +.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhh
Confidence 45688888888888888888766543 4455667888999999999999999888777665555555 5899999999
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC------------------------CCcchH
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV------------------------RSVVSW 148 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~------------------------~~~~~~ 148 (164)
++..+.++++. .|+..-...+-+-|...|.++.|.-+|..+.+ .+..||
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 99876555443 47777777888889999999999888887752 267899
Q ss_pred HHHHHHHHhcCCCCCC
Q 031208 149 TTMISGLAASGDLDAA 164 (164)
Q Consensus 149 ~~li~~~~~~g~~~~A 164 (164)
.-+-.+|...++|..|
T Consensus 203 KeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLA 218 (624)
T ss_dssp HHHTHHHHHSCTTTTT
T ss_pred HHHHHHHhCchHHHHH
Confidence 9999999999998765
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.49 E-value=0.054 Score=33.98 Aligned_cols=98 Identities=6% Similarity=-0.136 Sum_probs=68.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccch----------hhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI----------EKGKEVHGLAVKAGFSRDMFVQSTLMDLY 124 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~----------~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 124 (164)
.+.+.+++|...+++..+.. +-+...|..+-.++...+++ ++|...+++..+.. +.+...|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 44566788888888887643 23555666666677776654 58888888888775 33566788888888
Q ss_pred HhcC-----------CchhHHHHhcccC--CCCcchHHHHHHH
Q 031208 125 LKCG-----------DVDGGRKMFDKMR--VRSVVSWTTMISG 154 (164)
Q Consensus 125 ~~~~-----------~~~~a~~~~~~m~--~~~~~~~~~li~~ 154 (164)
...| ++++|.+.|++.. +|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7664 7899999998776 6666666655544
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.43 E-value=0.22 Score=37.07 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCCCc--HhHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cccHHHHHHH
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRCPH--VFTWN--LMIRALTIDGSSLQALLLYNLMICNGFRPD-KFTFPFVIKA 88 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~ 88 (164)
.+|...+...-+.++++.|..+|+....|+ ...|. +.+.. ...++++.|..+|+...+.- |+ ...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~-~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEY-YATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-HHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHH-HHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 557777777777888999999999885343 23332 22222 22347999999999987652 43 3334556677
Q ss_pred HHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..+.|+.+.|..+++.. ......|...++.=...|+.+.+..++++..
T Consensus 364 e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77889999999999986 2357888888888888899998888777654
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.28 E-value=0.12 Score=29.59 Aligned_cols=63 Identities=13% Similarity=-0.065 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHhccchhhHHHHHHHHHHhC------CCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 79 KFTFPFVIKACIASLAIEKGKEVHGLAVKAG------FSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 79 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
...+-.|-..+.+.+++..|...+++..+.- -.+...++..|..+|.+.|+++.|...+++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3345566677777788888888887766531 13456778888888899999999998888765
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.99 E-value=0.17 Score=28.45 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=36.4
Q ss_pred cHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 43 HVFTWNLMIRALTIDGS---SLQALLLYNLMICNGFRPD-KFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
|...+..+-.++...++ .++|..++++..+. .|+ ......+-..+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444433333 56777777776653 343 334445556666777777777777776654
No 217
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.85 E-value=0.26 Score=35.51 Aligned_cols=72 Identities=8% Similarity=-0.068 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHH-----hCCCCchHHHHHH
Q 031208 48 NLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVK-----AGFSRDMFVQSTL 120 (164)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~l 120 (164)
..++..+...|+++++...+....... +.++..+..+|.++.+.|+..+|.+.|+...+ .|+.|+..+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 445667778899999999999886542 55888999999999999999999999987654 4999987654433
No 218
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.47 E-value=0.88 Score=32.39 Aligned_cols=146 Identities=8% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhccC-CcHHHHHHHhccC--C-CcHhHHHHHHHHHHhc-C-ChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 031208 13 QLLVRKLLDLCSFYG-KTDHALLVFSQIR--C-PHVFTWNLMIRALTID-G-SSLQALLLYNLMICNGFRPDKFTFPFVI 86 (164)
Q Consensus 13 ~~~~~~li~~~~~~~-~~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll 86 (164)
..+|+.--..+...| .++++..+++.+. . .+-.+|+.--..+.+. + ++++++++++++.+.. +-|-..|+---
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~ 166 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLH 166 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 334555444445555 4777777777664 2 3455666655555554 5 6777777777776532 22445565555
Q ss_pred HHHHhccchh--------hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-------chhHHHHhcccC--CC-CcchH
Q 031208 87 KACIASLAIE--------KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD-------VDGGRKMFDKMR--VR-SVVSW 148 (164)
Q Consensus 87 ~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~--~~-~~~~~ 148 (164)
..+.+.+..+ ++.+..+.+.+.. .-|...|+..-..+.+.+. ++++.+.+++.. .| |...|
T Consensus 167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW 245 (349)
T 3q7a_A 167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAW 245 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 5555555555 7777777777665 3456677777666666665 456666665543 33 66777
Q ss_pred HHHHHHHHhcCC
Q 031208 149 TTMISGLAASGD 160 (164)
Q Consensus 149 ~~li~~~~~~g~ 160 (164)
+.+-..+.+.|+
T Consensus 246 ~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 246 NYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 766555555544
No 219
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.46 E-value=1.2 Score=33.84 Aligned_cols=132 Identities=14% Similarity=0.003 Sum_probs=98.6
Q ss_pred ccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 25 FYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGS----------SLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 25 ~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
.....++|.+.++.+. .| +...|+.-=..+...++ ++++++.++++.+.. +-+...|..--..+.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445567888888876 34 44567665555555555 899999999998753 3355688888888888
Q ss_pred cc--chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-CchhHHHHhcccCCC---CcchHHHHHHHHHhc
Q 031208 92 SL--AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCG-DVDGGRKMFDKMRVR---SVVSWTTMISGLAAS 158 (164)
Q Consensus 92 ~~--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~ 158 (164)
.+ +++++.++++.+.+.. +-+-..|+.---...+.| .++++.+.++++.+. |...|+..-..+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 89 6699999999999876 456778887777777888 889999999888743 667888776666653
No 220
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.30 E-value=0.12 Score=29.80 Aligned_cols=64 Identities=6% Similarity=0.059 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 031208 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDL 123 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 123 (164)
+.=++.+-++.+-...+.|++....+.+++|.+.+++..|.++++-++..- .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 445677777777778888888888888888888888888888888776432 3335567777653
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.14 E-value=0.47 Score=34.07 Aligned_cols=74 Identities=7% Similarity=-0.080 Sum_probs=60.1
Q ss_pred CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHH
Q 031208 41 CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQS 118 (164)
Q Consensus 41 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 118 (164)
..+...|..+-..+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3566777777777777899999999999998875 88777777788889999999999999988876 46655543
No 222
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.96 E-value=1.5 Score=34.61 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=78.2
Q ss_pred HHHHHHHHHhccCC-cHHHHHHHhccC--CCcHhH-H-HHHHHHHHhcCC-hhHHHHHHHHHHH------cCCCCCcccH
Q 031208 15 LVRKLLDLCSFYGK-TDHALLVFSQIR--CPHVFT-W-NLMIRALTIDGS-SLQALLLYNLMIC------NGFRPDKFTF 82 (164)
Q Consensus 15 ~~~~li~~~~~~~~-~~~a~~~~~~~~--~~~~~~-~-~~li~~~~~~~~-~~~a~~~~~~m~~------~~~~p~~~t~ 82 (164)
....++..+...|+ .+.|.++|+.+. .|...+ + ..++..+.+.++ --+|..++.+..+ ....+.....
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44555565665666 477999999876 343222 2 333333333332 2245555555432 1223322111
Q ss_pred -------HHHH----HHHHhccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 83 -------PFVI----KACIASLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 83 -------~~ll----~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..|+ +-|...|+++.|.++-++.... .|+ -.+|-.|..+|.+.|+++.|+-.++.++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1133 3455679999999999988765 465 6799999999999999999999999886
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.84 E-value=0.52 Score=36.71 Aligned_cols=83 Identities=13% Similarity=0.005 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
.+...|..+-..+.+.++++.|.+.|..+... ..+...+...++.+....+-+.....| -++....++.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~-----~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~ 747 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDL-----ESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYW 747 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH-----HHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh-----hhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHH
Confidence 46788999999999999999999999988753 334444555666665555544444443 3344555555
Q ss_pred hccchhhHHHHHHH
Q 031208 91 ASLAIEKGKEVHGL 104 (164)
Q Consensus 91 ~~~~~~~a~~~~~~ 104 (164)
+.|++++|.+++.+
T Consensus 748 ~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 748 IAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 56666666555543
No 224
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.80 E-value=0.6 Score=28.02 Aligned_cols=89 Identities=9% Similarity=-0.111 Sum_probs=70.2
Q ss_pred HHHHHhccCCcHHHHHHHhccC-CCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh--
Q 031208 19 LLDLCSFYGKTDHALLVFSQIR-CPHVFTWNLMIRALTI----DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIA-- 91 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-- 91 (164)
+=..|...+.++.|.+.|++.. ..+...+..|=..|.. .+++++|...|++-.+.| +...+..|-..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 4456666677888999999765 4577777777777777 789999999999998775 34556667777777
Q ss_pred --ccchhhHHHHHHHHHHhCC
Q 031208 92 --SLAIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 92 --~~~~~~a~~~~~~m~~~g~ 110 (164)
.++.++|..+++...+.|.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 7899999999999888774
No 225
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.50 E-value=1.4 Score=31.15 Aligned_cols=136 Identities=9% Similarity=-0.053 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHhccC--CcHHHHHHHhccC---CCcHhHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCcccHHH
Q 031208 11 NDQLLVRKLLDLCSFYG--KTDHALLVFSQIR---CPHVFTWNLMIRALTIDGS-SLQALLLYNLMICNGFRPDKFTFPF 84 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ 84 (164)
-+..+|+----.+.+.+ .++.+..+++.+. ..|-..|+.---.....|. ++++++.+.++.+.. +-|...|+.
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 36666766656666666 4788999888876 3577888887777788888 589999999998754 335556666
Q ss_pred HHHHHHhc--------------cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-----------CCchhHHHHhcc
Q 031208 85 VIKACIAS--------------LAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC-----------GDVDGGRKMFDK 139 (164)
Q Consensus 85 ll~~~~~~--------------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~ 139 (164)
....+.+. +.++++.+.+....... +-|...|+-+-..+.+. +.++++.+.+++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 65555544 45677888888877665 45677777665555554 346777777777
Q ss_pred cC--CCCcchHH
Q 031208 140 MR--VRSVVSWT 149 (164)
Q Consensus 140 m~--~~~~~~~~ 149 (164)
+. +||. .|.
T Consensus 264 lle~~pd~-~w~ 274 (331)
T 3dss_A 264 LQELEPEN-KWC 274 (331)
T ss_dssp HHHHCTTC-HHH
T ss_pred HHhhCccc-chH
Confidence 76 5654 343
No 226
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.20 E-value=0.67 Score=26.72 Aligned_cols=57 Identities=5% Similarity=0.044 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCC---CCcchHHHHHH
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRV---RSVVSWTTMIS 153 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~ 153 (164)
+..+-+..+....+.|++.+..+.+.+|.|.+++..|.++|+.++. ....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3444444444555666666666666666666666666666665551 12334555544
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.16 E-value=0.33 Score=35.00 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=54.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCccc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMIC-----NGFRPDKFT 81 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t 81 (164)
...++..+...|+.++|........ .| +...|..+|.++.+.|+..+|++.|++..+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445667778999999988877765 34 778999999999999999999999999744 599998865
No 228
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.02 E-value=0.17 Score=39.78 Aligned_cols=116 Identities=9% Similarity=-0.016 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCccc--HHHHHHHHHhccch-hhHHHHHHHHHHh------CCCCchH-
Q 031208 47 WNLMIRALTIDGS-SLQALLLYNLMICNGFRPDKFT--FPFVIKACIASLAI-EKGKEVHGLAVKA------GFSRDMF- 115 (164)
Q Consensus 47 ~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~-~~a~~~~~~m~~~------g~~~~~~- 115 (164)
...++.-+...++ .+.|.++|+++.... |...+ ...++....+.++- -+|.+++.+..+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455555666666 588999999997753 43322 22333333333322 2344444443321 2222111
Q ss_pred ----------HHHHHHHHHHhcCCchhHHHHhcccC--CC-CcchHHHHHHHHHhcCCCCCC
Q 031208 116 ----------VQSTLMDLYLKCGDVDGGRKMFDKMR--VR-SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 116 ----------~~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A 164 (164)
.-+.-.+.+...|+++.|+++-++.. .| +-.+|-.|..+|.+.|++|.|
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~A 390 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKA 390 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHH
Confidence 11222345567899999999998876 45 567999999999999999865
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.76 E-value=1 Score=27.71 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=86.6
Q ss_pred HHHHHHHHH--HhccCCcHHHHHHHhccCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CC--------------
Q 031208 14 LLVRKLLDL--CSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALLLYNLMICN-GF-------------- 75 (164)
Q Consensus 14 ~~~~~li~~--~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-------------- 75 (164)
.+...||++ ..-.|.+++..++..+... .+..-||-+|.-....-+=+-.+++++.+-.. .+
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGV 85 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHH
Confidence 345556654 3347888888888887663 45556666666666666666666666665331 11
Q ss_pred --CCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC
Q 031208 76 --RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR 143 (164)
Q Consensus 76 --~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 143 (164)
..+..-+...++.....|+.++..++...+.. +.+|++...-.+-.+|.+.|+..+|.+++.+.-++
T Consensus 86 ~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 86 INNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 12333456667777888888888888888654 33677888888889999999999999998876533
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.51 E-value=1.1 Score=27.54 Aligned_cols=83 Identities=10% Similarity=-0.123 Sum_probs=62.1
Q ss_pred cCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHH
Q 031208 26 YGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLA 105 (164)
Q Consensus 26 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 105 (164)
+|.+....+.+-.+- .+...++..++.....|.-|+-.+++.++.. +.+|++...-.+..+|.+.|+..++.+++.+.
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444443332 3344567788889999999999999999744 34677777788999999999999999999999
Q ss_pred HHhCC
Q 031208 106 VKAGF 110 (164)
Q Consensus 106 ~~~g~ 110 (164)
-+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 99986
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.48 E-value=0.78 Score=25.65 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHhccCC---cHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 10 SNDQLLVRKLLDLCSFYGK---TDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
+.|+..+..+-.++...++ .++|..++++.. .| +......+-..+.+.|++++|...|+++.+.. |+.....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~~~ 80 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLDRV 80 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHH
Confidence 4566777777776654443 799999999876 34 56677777788899999999999999998764 3333344
Q ss_pred HHHHH
Q 031208 84 FVIKA 88 (164)
Q Consensus 84 ~ll~~ 88 (164)
.+...
T Consensus 81 ~i~~~ 85 (93)
T 3bee_A 81 TIIES 85 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 232
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.43 E-value=0.32 Score=29.65 Aligned_cols=63 Identities=6% Similarity=0.075 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 59 SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
+.=+..+-++.+....+.|++......+++|-+.+|+..|.++++-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 333555556666666777777777777777777777777777777665332 334556666655
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.35 E-value=1.4 Score=28.15 Aligned_cols=111 Identities=10% Similarity=0.133 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
-+...|..|-+.....|+++-|.+.|..... +..+.-.|.-.|+.+....+-+.-...| -++..+..+.
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l 100 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTF 100 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHH
Confidence 3677899999999999999999999999885 4445556677788777666555555554 6788888899
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
-.|+++++.+++.+ .|..|.. .-.....|..+.|.++.+++.
T Consensus 101 ~lGdv~~~i~lL~~---~~r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 101 YNNSTKERSSIFAE---GGSLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHTCHHHHHHHHHH---TTCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHH---CCChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 99999999888754 3432211 111222566667777776553
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.30 E-value=2 Score=29.87 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=69.3
Q ss_pred cHHHHHHHhccC--CCc---HhHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCC--CcccHHHHHHHHHhc-cch
Q 031208 29 TDHALLVFSQIR--CPH---VFTWNLMIRALTID-----GSSLQALLLYNLMICNGFRP--DKFTFPFVIKACIAS-LAI 95 (164)
Q Consensus 29 ~~~a~~~~~~~~--~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~-~~~ 95 (164)
...|...+++.. .|+ ...|+.+-..|.+. |+.+.|...|++-.+- .| +..++...-..++.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 355555555554 355 56899999999984 9999999999999884 46 366777778888884 999
Q ss_pred hhHHHHHHHHHHhCCC--CchHHHHHHHH
Q 031208 96 EKGKEVHGLAVKAGFS--RDMFVQSTLMD 122 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~--~~~~~~~~ll~ 122 (164)
+++.+.+++....... |+....+.+-+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 9999999999887655 66655555544
No 235
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.18 E-value=3.1 Score=34.48 Aligned_cols=142 Identities=9% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------------------
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPD------------------- 78 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------------------- 78 (164)
.++..+.+.+..+.+.++..-.......+| .+-.++...|++++|.+.|.+.-. |+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~y-l~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHHHH-HHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 355566677777777776655544333333 333456788999999999976521 11110
Q ss_pred ----cccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCchhHHHHhcccCCC--CcchH
Q 031208 79 ----KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD----MFVQSTLMDLYLKCGDVDGGRKMFDKMRVR--SVVSW 148 (164)
Q Consensus 79 ----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~ 148 (164)
..=|..++..+-+.+.++.+.++-....+..-..+ ...|..+++.+...|++++|...+-.++.+ -....
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL 974 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL 974 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH
Confidence 01256677777888888888877766655432211 236888899999999999998888666532 12356
Q ss_pred HHHHHHHHhcCCC
Q 031208 149 TTMISGLAASGDL 161 (164)
Q Consensus 149 ~~li~~~~~~g~~ 161 (164)
..+|...+..|+.
T Consensus 975 r~LV~~lce~~~~ 987 (1139)
T 4fhn_B 975 LDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHCCH
T ss_pred HHHHHHHHhCCCh
Confidence 6677777766654
No 236
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.48 E-value=1.5 Score=26.77 Aligned_cols=59 Identities=5% Similarity=0.012 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHH
Q 031208 96 EKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISG 154 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~ 154 (164)
-+..+-+..+....+.|++.+..+.+.+|-|.+++..|.++|+.++ .+...+|..+++-
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3455556666667788999999999999999999999999999887 2344567777764
No 237
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.23 E-value=1.2 Score=25.19 Aligned_cols=62 Identities=5% Similarity=-0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNG------FRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
+-.|=..+.+.++++.|...|++..+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344555666777777777777654321 1123345666677777777777777777777654
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.40 E-value=1.5 Score=26.24 Aligned_cols=77 Identities=10% Similarity=-0.105 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhh---HHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCchhHHHHh
Q 031208 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEK---GKEVHGLAVKAGFSR--DMFVQSTLMDLYLKCGDVDGGRKMF 137 (164)
Q Consensus 63 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 137 (164)
+.+-|.+....|. |+..+---+..++.++....+ +..+++++.+.+ .| .....-.|--++.|.|++++|.+.+
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3334444333332 444444445556666655444 667777666554 23 2222223344567777777777777
Q ss_pred cccC
Q 031208 138 DKMR 141 (164)
Q Consensus 138 ~~m~ 141 (164)
+.+.
T Consensus 98 ~~lL 101 (126)
T 1nzn_A 98 RGLL 101 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 239
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.22 E-value=6.1 Score=27.85 Aligned_cols=123 Identities=7% Similarity=-0.082 Sum_probs=87.8
Q ss_pred cHHHHHHHhccC--C-CcHhHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc-hhhHHHHH
Q 031208 29 TDHALLVFSQIR--C-PHVFTWNLMIRALTIDG--SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-IEKGKEVH 102 (164)
Q Consensus 29 ~~~a~~~~~~~~--~-~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~ 102 (164)
++++..+++.+. . .+-.+|+.--..+.+.+ .+++++.+++++.+.. +-|-..|+.--..+...|. .+++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777665 3 36678888777777777 4899999999998753 3366677777777778887 58899999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhc--------------CCchhHHHHhcccC--CC-CcchHHHHHH
Q 031208 103 GLAVKAGFSRDMFVQSTLMDLYLKC--------------GDVDGGRKMFDKMR--VR-SVVSWTTMIS 153 (164)
Q Consensus 103 ~~m~~~g~~~~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~m~--~~-~~~~~~~li~ 153 (164)
+.+.+.. +-|...|+..-..+.+. +.++++.+.++... .| |...|+-+--
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ 235 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 235 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9998876 45677787766666554 34667777777654 44 6677765433
No 240
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=86.72 E-value=4 Score=25.24 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCCCc---HhHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCccc
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGS--SLQALLLYNLMICNGFRPDKFT 81 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t 81 (164)
..+.++.-|...|+.++|...++.+..|. ..+...+..++-+.++ -+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 35678888999999999999999998663 3445555556555332 4567778888877665555443
No 241
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.59 E-value=3.1 Score=23.91 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHH
Q 031208 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~ 153 (164)
.++|..+-+.+...+. .+.+--+-+..+...|++++|..+.+...-||...|-++-.
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce 78 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE 78 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH
Confidence 4566666666655543 33333344455667777777777777777777777766644
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.31 E-value=3.3 Score=23.87 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHH
Q 031208 95 IEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~ 153 (164)
.++|..+-+.+...+. .+.+--+-+..+...|++++|..+.+...-||...|-++-.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce 79 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE 79 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH
Confidence 3455555555554442 33333333444555666666666666666666666655543
No 243
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.13 E-value=4.4 Score=25.12 Aligned_cols=69 Identities=9% Similarity=-0.037 Sum_probs=43.5
Q ss_pred CcHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc
Q 031208 42 PHVFTWNLMIRALTIDG---SSLQALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 113 (164)
++..+.-.+-.++++.+ +.+++..++++..+.. .| +...+=.+--++.+.|+++.|.+.++.+.+. +|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 44544444455667766 5668888888876654 23 1222233445668888888888888888776 454
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.00 E-value=3.4 Score=23.76 Aligned_cols=53 Identities=11% Similarity=-0.044 Sum_probs=33.6
Q ss_pred HHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 20 LDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
+..+...|++++|..+.+.+..||...|-.|- -.+.|..+.+..-+.++..+|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 34455677777777777777777777775442 346666666666666666555
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.81 E-value=8.4 Score=28.08 Aligned_cols=93 Identities=11% Similarity=-0.047 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC------CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC------PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG-FRPDKFTFPFVIK 87 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~ 87 (164)
+...+-+.+.+.|+++.|.+.+.++.. .-...+-.+|..+...+++..+...+.+....- -.++...-+ -++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~-~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN-RYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH-HHH
Confidence 455677788888888888888888762 334567777888888888888888888874321 112222111 122
Q ss_pred H-----HHhccchhhHHHHHHHHHHh
Q 031208 88 A-----CIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 88 ~-----~~~~~~~~~a~~~~~~m~~~ 108 (164)
. +...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2 23456788887777766544
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.23 E-value=3.8 Score=23.61 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=30.3
Q ss_pred HHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 21 DLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
..+...|++++|..+.+.+..||...|-.|- -.+.|..+.+..-+.++..+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3455566666666666666666666664442 245555555555555555544
No 247
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=84.25 E-value=4.9 Score=24.03 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCc---HhHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCcc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGS--SLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 80 (164)
.+.++.-|...|+.++|...++.+..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5678888888999999999999988663 2445555556555432 467778888887766555443
No 248
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.88 E-value=7.3 Score=27.10 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=72.8
Q ss_pred HHHHHHhccCCCc--HhHHHHHHHHH-Hhc--CC------hhHHHHHHHHHHHcCCCCC---cccHHHHHHHHHh-----
Q 031208 31 HALLVFSQIRCPH--VFTWNLMIRAL-TID--GS------SLQALLLYNLMICNGFRPD---KFTFPFVIKACIA----- 91 (164)
Q Consensus 31 ~a~~~~~~~~~~~--~~~~~~li~~~-~~~--~~------~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~----- 91 (164)
.-.+.+......+ ...|..++.+- +.. |. ...|...+++..+ +.|+ -..|.++-..|.+
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~ 216 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESF 216 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTT
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCcc
Confidence 3344444444333 34566655543 332 32 3455555555544 4566 3467888888888
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCchhHHHHhcccC
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC-GDVDGGRKMFDKMR 141 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~ 141 (164)
.|+.++|.+.|++..+-+-.-+..++...-+.+++. |+.+.+.+.+++..
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 499999999999998875222477888888888885 99999999999875
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.45 E-value=8.4 Score=28.08 Aligned_cols=95 Identities=8% Similarity=-0.098 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--cccHHHHHHHHHhccchhhHHHHHHHHHHh-CCCCchHHHHHH--
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPD--KFTFPFVIKACIASLAIEKGKEVHGLAVKA-GFSRDMFVQSTL-- 120 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l-- 120 (164)
+...+-..|.+.|+.+.|.+.|.++......+. ...+-.+++.+...+++..+.......... .-.++...-+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 345677788899999999999999976543333 356777889999999999999999887543 112222222211
Q ss_pred --HHHHHhcCCchhHHHHhccc
Q 031208 121 --MDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 121 --l~~~~~~~~~~~a~~~~~~m 140 (164)
.-.+...+++..|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 11123467888888777654
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.80 E-value=10 Score=26.79 Aligned_cols=132 Identities=16% Similarity=0.016 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCcccHHHHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLY----NLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
.|.++..-|.+.+++++|.+++-.- ...+.+.|....+-++- +-..+.++++|..+..-|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555666666666666666654321 22345556655544443 44456777888777777777776
Q ss_pred hccchh-hHHHHHHHH----HHhCC--CCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHh
Q 031208 91 ASLAIE-KGKEVHGLA----VKAGF--SRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 91 ~~~~~~-~a~~~~~~m----~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
....-+ .-..+++.+ .+.|- .-++.....+-..|.+.+++.+|..-|=--..++...+..++.-+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 655321 222333333 33442 23567777888888999999998887732122223555444444433
No 251
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=82.45 E-value=8.7 Score=25.62 Aligned_cols=89 Identities=9% Similarity=-0.031 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH--cCCCC----CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 031208 49 LMIRALTIDGSSLQALLLYNLMIC--NGFRP----DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMD 122 (164)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~--~~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 122 (164)
--++.+....++++|++++++.+. .++++ ........++.-.....-..+..+.+++.. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 346677778888888888887743 22332 112333344444555555556666666632 455555666677
Q ss_pred HHHhcCCchhHHHHhccc
Q 031208 123 LYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m 140 (164)
...+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 788888888888877544
No 252
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.19 E-value=7 Score=24.37 Aligned_cols=101 Identities=14% Similarity=-0.011 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHhccCCc------HHHHHHHhccC---CCcH----hHHHHHHHH---HHhcCChhHHHHHHHHHHHcCC
Q 031208 12 DQLLVRKLLDLCSFYGKT------DHALLVFSQIR---CPHV----FTWNLMIRA---LTIDGSSLQALLLYNLMICNGF 75 (164)
Q Consensus 12 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~---~~~~----~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~ 75 (164)
|..+|=..+...-+.|++ +...++|++.. .|+. ..|.-|--- +-..++++.|.++|+.+...+-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 566666666666666776 55556665432 1211 111111111 1222566777777777654311
Q ss_pred CCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc
Q 031208 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 76 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 113 (164)
+. ...|..-..-=.+.|+...|.+++......+-.|.
T Consensus 92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 11 11222222222445666677777766665553333
No 253
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.38 E-value=7.9 Score=24.39 Aligned_cols=139 Identities=9% Similarity=-0.041 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 031208 11 NDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACI 90 (164)
Q Consensus 11 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 90 (164)
+|..+-...+..+.+.+..+....+.+.+..+|...-...+.++++.+..+.. ..+.++.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHH
Confidence 45555555566666666655566666666666666655666666666655333 33333332 255555556666666
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHHh
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
+.++.+....+.+.+ -.++..+-...+.+..+.+..+....+.+-+..++..+-...+.++.+
T Consensus 102 ~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 102 QIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666544333333322 135555555556666666654433333333334444333444444433
No 254
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=80.90 E-value=7.2 Score=23.67 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=47.6
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 68 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+-..+..|.-..|+.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 44677888877643 4667777777777889999999988776677777777888888777654
No 255
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=80.41 E-value=7.2 Score=23.36 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=46.5
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcc-chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 69 LMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 69 ~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+-..+..|.-.-|+.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4677888877643 45677777766 67789999999988876777777777888888777655
No 256
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=80.12 E-value=4.2 Score=24.30 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc--chhhHHHHHHHHHHhCCCCch
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL--AIEKGKEVHGLAVKAGFSRDM 114 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~ 114 (164)
..+.++.-|...|+.++|...++++..-.+. .......+..++-+.+ ..+....++..+.+.|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567888899999999999999998532111 1233344444555443 235567777777777754443
No 257
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=79.88 E-value=8.6 Score=23.92 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=54.7
Q ss_pred hhHHHHHHHH-HHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCchh
Q 031208 60 SLQALLLYNL-MICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA--GFSRDMFVQSTLMDLYLKCGDVDG 132 (164)
Q Consensus 60 ~~~a~~~~~~-m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~ 132 (164)
.+.+++-+.+ +.+.|++++.. -..++..+...++.-.|.++++.+.+. +-..+..|.-.-|+.+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4555655555 47788888664 467788888888888999999999987 766777777777888888886553
No 258
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=79.83 E-value=7.1 Score=23.75 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=45.6
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 68 NLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 68 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+-..+..|.-.-|+.+...|-+.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 44567788887643 45666666666 6789999999988776677777777788888777654
No 259
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=79.60 E-value=8.3 Score=23.58 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=46.9
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 67 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
-..+.+.|++++..= ..++..+...+..-.|.++++.+.+.+-..+..|.-..|+.+...|-+.
T Consensus 15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 344677888776643 4677777777778889999999988876677777777888888887654
No 260
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=79.37 E-value=8.5 Score=23.55 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=48.8
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcc-chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchh
Q 031208 68 NLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDG 132 (164)
Q Consensus 68 ~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 132 (164)
..+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+-..+..|.-.-|+.+...|-+..
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 44677888887753 45677777766 677899999999988767777787888888888887653
No 261
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=77.36 E-value=4.7 Score=20.59 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHHHH-Hhccch
Q 031208 60 SLQALLLYNLMICNGFRPDKFTFPFVIKAC-IASLAI 95 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~ 95 (164)
.++|...|.+|.+..-.++..||.-.++.+ ++..++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 367888888886555555566888888888 665543
No 262
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=77.11 E-value=9.3 Score=27.33 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCCCc----HhHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCcccHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRCPH----VFTWNLMIRALTIDG-SSLQALLLYNLMICNGFRPDKFTFP 83 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~ 83 (164)
....+|.-|...|+.++|...++.+..|+ ...+..+..++-+.. .-+.+-.++..+...|+-+......
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~ 87 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 45778999999999999999999998775 234444444443322 1345666777777766544443333
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.89 E-value=11 Score=23.67 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHhcccCC
Q 031208 116 VQSTLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
+---+-.+|.+.++.++|+.+++.++.
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 334467889999999999999999873
No 264
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.57 E-value=3.3 Score=25.63 Aligned_cols=68 Identities=6% Similarity=0.033 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc--hhhHHHHHHHHHHhCCCCch
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA--IEKGKEVHGLAVKAGFSRDM 114 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~~~ 114 (164)
..+.++.-|...|+.++|...++++..-.+. .......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4677888999999999999999998532111 12333444455554322 34566777777777754443
No 265
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=75.06 E-value=11 Score=22.53 Aligned_cols=66 Identities=9% Similarity=-0.052 Sum_probs=42.0
Q ss_pred CcHhHHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 42 PHVFTWNLMIRALTIDGSSLQ---ALLLYNLMICNGFRP--DKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
++..+--.+-.++.+.....+ ++.++.+....+ .| +....=.|--++.+.|+++.|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444443344456677766655 777777776653 22 1222234556788888999999988888876
No 266
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=74.89 E-value=7.7 Score=20.73 Aligned_cols=63 Identities=6% Similarity=0.021 Sum_probs=46.3
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcc-chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 68 NLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 68 ~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
..+.+.|+.++..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....++.+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 34667787776644 46667776665 56678889999888776677788888888888877654
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.83 E-value=19 Score=25.19 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=53.9
Q ss_pred HHHhcCChhHHHHH----HHHHHHcCCCCCcccHHHHHHHHHhccchh-hHHHHHHHHH----HhCC--CCchHHHHHHH
Q 031208 53 ALTIDGSSLQALLL----YNLMICNGFRPDKFTFPFVIKACIASLAIE-KGKEVHGLAV----KAGF--SRDMFVQSTLM 121 (164)
Q Consensus 53 ~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~m~----~~g~--~~~~~~~~~ll 121 (164)
.+.+.|+...|-++ .+-..+.+++++..+..-++..+......+ .-.+++..+. +.|- .-++.....+-
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34556776555554 444466788888877777777776644222 2233333333 3332 23677888888
Q ss_pred HHHHhcCCchhHHHHhc
Q 031208 122 DLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 122 ~~~~~~~~~~~a~~~~~ 138 (164)
..|.+.|++.+|..-|-
T Consensus 142 ~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHH
Confidence 88899999988887554
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.40 E-value=22 Score=25.37 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCc---HhHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGS--SLQALLLYNLMICNGFRPDK 79 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 79 (164)
.+.++.-|...|+.++|...++.+..|. ..+...+..++-+.++ -+.+..++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 4555666666666666666666666442 2233334444433222 34455566666555544433
No 269
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=73.12 E-value=21 Score=24.89 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCc---HhHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCcc
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGS--SLQALLLYNLMICNGFRPDKF 80 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 80 (164)
.+.++.-|...|+.++|...++++..|. ..+...+..++-+.++ -+.+..++..+...|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3456677777778888888887777552 2334444444444322 345666777776655554443
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.55 E-value=0.81 Score=34.51 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=63.9
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC-CCchHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF-SRDMFVQSTLM 121 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll 121 (164)
+..||--+-.+|...+++..|.-.=-.+. +.|+. ...++..|-..|-+++...+++.-. |. .....+|+-|-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELa 270 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELA 270 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHH
Confidence 34455555555555555555443322222 11222 1234445555566666666655543 22 24678888888
Q ss_pred HHHHhcCCchhHHHHh----cccCCC-------CcchHHHHHHHHHhcCCCCCC
Q 031208 122 DLYLKCGDVDGGRKMF----DKMRVR-------SVVSWTTMISGLAASGDLDAA 164 (164)
Q Consensus 122 ~~~~~~~~~~~a~~~~----~~m~~~-------~~~~~~~li~~~~~~g~~~~A 164 (164)
-.|+|.. .++.++-+ .++..| ....|.-++-.|.+..++|.|
T Consensus 271 ILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 271 ILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 8888763 34444333 344434 567899999999888877643
No 271
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=72.23 E-value=15 Score=22.90 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=78.3
Q ss_pred CcHhHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCcc----cHHHHH---HHHHhccchhhHHHHHHHHHHh
Q 031208 42 PHVFTWNLMIRALTIDGSS------LQALLLYNLMICNGFRPDKF----TFPFVI---KACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----t~~~ll---~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
.|-.+|=..+...-+.|++ +...++|++.... ++|+.. .|.-|. ..+...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4667777777777777999 8888888887664 666542 121111 1123448999999999999876
Q ss_pred CCCCchHHHHHHHHHHHhcCCchhHHHHhcccC---CCCcchHHHHHHHHH
Q 031208 109 GFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR---VRSVVSWTTMISGLA 156 (164)
Q Consensus 109 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~ 156 (164)
+-. -..+|-..-+.-.+.|++..|.+++..-. .++.....+.++.+-
T Consensus 90 hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 90 CKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 433 37777777777889999999999998643 345556666666543
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.74 E-value=16 Score=23.08 Aligned_cols=139 Identities=10% Similarity=-0.024 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.++..+-...+..+.+.|..+....+.+.+..+|...-...+.++++.+..+.. ..+.++.. .++...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHH
Confidence 345555555566666666655555555555566665555566666666654333 33333322 24544555556666
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHHHHH
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMISGLA 156 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~ 156 (164)
.+.++.+....+.+ +. -.++..+-...+.+..+.+..+....+.+-+..++..+-...+.++.
T Consensus 106 ~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 106 GQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp HHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66655433333332 22 13555555555666666555443333333333444333333333333
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.61 E-value=8.9 Score=26.26 Aligned_cols=71 Identities=17% Similarity=0.018 Sum_probs=51.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhC--CCCchHHHHHHHHH
Q 031208 52 RALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG--FSRDMFVQSTLMDL 123 (164)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~ 123 (164)
....+.|.++++++-..+-++.. +-|...-..++.-+|-.|+++.|.+=++...+.. ..|...+|-.+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 45567888999988877776653 4577777888999999999999988887776553 23344456666654
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.28 E-value=49 Score=27.57 Aligned_cols=112 Identities=10% Similarity=-0.014 Sum_probs=79.8
Q ss_pred HHhccCCcHHHHHHHhccCC--------C------------------cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 031208 22 LCSFYGKTDHALLVFSQIRC--------P------------------HVFTWNLMIRALTIDGSSLQALLLYNLMICNGF 75 (164)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~--------~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 75 (164)
++...|++++|...|.+... . -..=|..++..+-+.+.++.+.++-+.-.+..-
T Consensus 851 ~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~ 930 (1139)
T 4fhn_B 851 IYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 930 (1139)
T ss_dssp HHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC
T ss_pred HHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56679999999999987641 0 011267788889999999999988776654321
Q ss_pred CCCc----ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHH
Q 031208 76 RPDK----FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRK 135 (164)
Q Consensus 76 ~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 135 (164)
.-+. ..|..+++++...|++++|...+-.+..... -......|+...+..|..+.-..
T Consensus 931 ~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 931 TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhC
Confidence 1111 2588899999999999999998877765433 34566677777777776665443
No 275
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.33 E-value=17 Score=21.96 Aligned_cols=56 Identities=18% Similarity=0.014 Sum_probs=34.3
Q ss_pred HHHHHhcc---chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 IKACIASL---AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..++.++. +...+..+++++.+.+-.-.....--|--++.|.|+++.|.+..+.+.
T Consensus 47 Aw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 47 AWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445544 345677777777766521223344445556778888888888777665
No 276
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=68.20 E-value=23 Score=24.63 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH----HhcCCchhHHHHhcc
Q 031208 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLY----LKCGDVDGGRKMFDK 139 (164)
Q Consensus 66 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~ 139 (164)
+++.+.+.|+.|...++.-++..+...=.++.+..+|+.+...|...-..+.-+++..+ .+..+.++...+++.
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 33444455667766777777777766666777777777777666432222222333222 223466666666665
No 277
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=67.84 E-value=17 Score=21.78 Aligned_cols=113 Identities=10% Similarity=-0.070 Sum_probs=62.7
Q ss_pred HHHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHHHh
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKACIA 91 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~ 91 (164)
+.+...++.|+.+....+++.-. ..+..-++.+. ..+..|+.+ +++.+.+.|..++.... .+.+...+.
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 34556677899999998887543 12222234444 345666654 44555566766654432 134444556
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHH--HHHHHHHHhcCCchhHHHHhcc
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFVQ--STLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
.|+.+ +++.+.+.|..++.... ...+...++.|+.+-+..+++.
T Consensus 85 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 85 YGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 66665 44555566665543211 1334555667787777666654
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=65.87 E-value=15 Score=24.66 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=8.3
Q ss_pred HHHHhccCCcHHHHHHHh
Q 031208 20 LDLCSFYGKTDHALLVFS 37 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~ 37 (164)
+...+..|+.+-+..+++
T Consensus 66 L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334444445544444444
No 279
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=65.59 E-value=16 Score=22.01 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=37.6
Q ss_pred HHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 71 ICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 71 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
++.|++++.. -..++..+...++.-.|.++++.+.+.+-..+..|.-.-|+.+...|-+.
T Consensus 6 r~~g~r~T~q-R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 6 PPVKGRATRQ-RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp ----CHHHHH-HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred CCCCCccCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3344444332 24566666666667778888888877776667777777777777777654
No 280
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=65.14 E-value=18 Score=21.39 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=30.8
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCch
Q 031208 84 FVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVD 131 (164)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 131 (164)
.++..+...+..-.|.++++.+.+.+-..+..|.-..|+.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 455555555566677777777777665556666666667776666543
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.99 E-value=27 Score=22.73 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 115 (164)
.|-..+..+ ..+...++.++|..|...|+.-.. .-|......+-..|++.+|.++++.-.+++-.|-..
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 444444333 244477999999999999888765 467788888899999999999999999988888644
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.95 E-value=24 Score=22.06 Aligned_cols=141 Identities=13% Similarity=0.009 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.++..+-...+.++.+.+..+....+.+.+..++...-...+.++.+.+..+.. ..+.++.. .++...-...+.++
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFAL 131 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHH
Confidence 456666666677778888777777777777788888877888888888876544 43444433 35666666777888
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc-CCCCcchHHHHHHHHHhcC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~li~~~~~~g 159 (164)
.+.++.+.... +..+.. .++..+-...+.++.+.|..+ +...+..+ ..++..+-...+.++.+.+
T Consensus 132 ~~~~~~~~~~~-L~~~l~---d~~~~vr~~A~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 132 GEIGDERAVEP-LIKALK---DEDGWVRQSAADALGEIGGER-VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHTCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHCSHH-HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHhCCHHHHHH-HHHHHc---CCCHHHHHHHHHHHHHhCchh-HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 87776543333 333332 467777777888888887644 44444433 3455555555566655544
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.90 E-value=39 Score=24.48 Aligned_cols=92 Identities=16% Similarity=-0.030 Sum_probs=61.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHHhccchhhHHHHHHHHHHh--CCCCchHHHHHHH
Q 031208 49 LMIRALTIDGSSLQALLLYNLMICNGFRPDK-----FTFPFVIKACIASLAIEKGKEVHGLAVKA--GFSRDMFVQSTLM 121 (164)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll 121 (164)
-+...|...|++.+|..++.++.+.--+.|- ..|-.-++.|...+++..+...+...... .+.+++.+-..+=
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5778889999999999999999664222221 24555678888999999999999877543 3324433322221
Q ss_pred ----HHHH-hcCCchhHHHHhccc
Q 031208 122 ----DLYL-KCGDVDGGRKMFDKM 140 (164)
Q Consensus 122 ----~~~~-~~~~~~~a~~~~~~m 140 (164)
..+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1233 678888887766543
No 284
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=63.27 E-value=23 Score=21.61 Aligned_cols=50 Identities=6% Similarity=-0.014 Sum_probs=35.2
Q ss_pred hhHHHHHHHHH-HHcCCCC---CcccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 60 SLQALLLYNLM-ICNGFRP---DKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 60 ~~~a~~~~~~m-~~~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
++.++++.+.. ...|+.| ++.++..+++...+.|-++....+.+....++
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~~w~~m~~~RN 107 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRN 107 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHHHHHHHHHHhh
Confidence 56677777766 3467665 47889999999999999888744444444454
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=63.04 E-value=28 Score=22.64 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=43.8
Q ss_pred HHHHH---HhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc-----hhhHHHHHHHHHHhCCCCchH
Q 031208 50 MIRAL---TIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-----IEKGKEVHGLAVKAGFSRDMF 115 (164)
Q Consensus 50 li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~ 115 (164)
+|+++ .+-++++.|+-.+.+|.+.| .|.-..-..++-+.--.|. ...|...++....-|.+--..
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 89 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARI 89 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 45555 44589999999999999999 7666655555655555553 334556667777778644333
No 286
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=62.62 E-value=24 Score=21.62 Aligned_cols=56 Identities=18% Similarity=0.014 Sum_probs=30.2
Q ss_pred HHHHHhcc---chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 86 IKACIASL---AIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 86 l~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
..++.++. +...+..+++++.+.+-.-.....--|--++.|.|++++|.+..+.+.
T Consensus 46 Aw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 46 AWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444 344566667666665422122223333445667777777777766654
No 287
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=62.43 E-value=14 Score=22.61 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=38.3
Q ss_pred HHHhcC---ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc
Q 031208 53 ALTIDG---SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 53 ~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 113 (164)
++.++. +...++.++.+....+-.-.....=.|.-++.+.|+++.|.++.+.+.+. +|+
T Consensus 48 ~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 48 GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 445554 45577778888766431112222334567888999999999999988876 464
No 288
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=61.97 E-value=8.4 Score=24.13 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
....+|.-|...++.++|..-++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 456788889889999999999998763
No 289
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=61.62 E-value=30 Score=22.46 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc-----hhhHHHHHHHHHHhCC
Q 031208 50 MIRALT---IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-----IEKGKEVHGLAVKAGF 110 (164)
Q Consensus 50 li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~ 110 (164)
+|+++. +-++++.|+-.+.+|.+.|-.|.-..--.++-+.-..|. ...|...++....-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 455554 458999999999999999987777666666666554443 2344555566666664
No 290
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.80 E-value=46 Score=24.35 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHH----HHHHHHHHhcCChhHHHH--HHHHHHHcCCCCCc
Q 031208 9 LSNDQLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTW----NLMIRALTIDGSSLQALL--LYNLMICNGFRPDK 79 (164)
Q Consensus 9 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~----~~li~~~~~~~~~~~a~~--~~~~m~~~~~~p~~ 79 (164)
...+..+...++..|.+.|+++...+.+..+.+ .-.... +.++.-.......+.... +.... ..+.-..
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l--~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETI--RVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCC--SSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--HHHhccc
Confidence 444567788889999999999988777665542 111222 223333333333332111 11111 1222222
Q ss_pred --------ccHHHHHHHHHhccchhhHHHHHHHHHHh--CCCCc---hHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 80 --------FTFPFVIKACIASLAIEKGKEVHGLAVKA--GFSRD---MFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 80 --------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.....|.+.+...|++.+|..++.++... |.... ...+...+..|...+++..|..+++.+.
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 12246778889999999999999998643 32222 3567777899999999999998888764
No 291
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=60.25 E-value=19 Score=19.81 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=11.7
Q ss_pred chhHHHHhcccCCCCcchHHHHHHHHHh
Q 031208 130 VDGGRKMFDKMRVRSVVSWTTMISGLAA 157 (164)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~li~~~~~ 157 (164)
.++|.++++.+..++...|..++.++..
T Consensus 52 ~~kar~Lld~l~~kG~~af~~F~~aL~~ 79 (94)
T 2p1h_A 52 QQRAAMLIKMILKKDNDSYVSFYNALLH 79 (94)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.90 E-value=30 Score=21.81 Aligned_cols=141 Identities=13% Similarity=0.017 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 031208 10 SNDQLLVRKLLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKAC 89 (164)
Q Consensus 10 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 89 (164)
.++..+-...+.++.+.+..+....+.+.+..+|...-...+.++++.+..+.. ..+.++.. .|+...-...+.++
T Consensus 61 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFAL 136 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHH
Confidence 356666666777778888777777777777778887777788888888875544 44444443 36666667778888
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhccc-CCCCcchHHHHHHHHHhcC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKM-RVRSVVSWTTMISGLAASG 159 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~li~~~~~~g 159 (164)
.+.++.+....+ ..+.. .++..+-...+.+..+.+.. .+...+.++ ..++..+=...+.++.+.+
T Consensus 137 ~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 137 GEIGDERAVEPL-IKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 887775433333 33332 46677777778888887763 344444433 3445444455555554443
No 293
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.87 E-value=14 Score=21.78 Aligned_cols=43 Identities=5% Similarity=-0.072 Sum_probs=27.6
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHh
Q 031208 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKA 108 (164)
Q Consensus 66 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (164)
+|+.+....+.|+...--.-|..+...+++..|.+++-.+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3455555566555544444455667778888888888777653
No 294
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.70 E-value=46 Score=23.36 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=69.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCcH---hHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHV---FTWNLMIRALTIDG-SSLQALLLYNLMICNGFRPDKFTFPFVIKACIA 91 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 91 (164)
...++.-|...|+.++|...++.+..|.. .+...+..++-+.. .-+.+..++..+.+.|+-+.. .+..|+.+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~----~~~~Gf~~ 89 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA----QYYQGLYE 89 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH----HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHH
Confidence 56788899999999999999999987642 23333333333222 235566677777665544433 33333332
Q ss_pred c--------cchhhHHHHHHHHHHh----CCCCchH-----------------HHHHHHHHHHhcCCchhHHHHhcc
Q 031208 92 S--------LAIEKGKEVHGLAVKA----GFSRDMF-----------------VQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 92 ~--------~~~~~a~~~~~~m~~~----g~~~~~~-----------------~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
. -|+..|...+.++... |..|-.. ....++..+.+....+.+.++|++
T Consensus 90 ~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 90 ILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 2 2566677777766543 4333211 133345556666666666666654
No 295
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=57.51 E-value=19 Score=20.19 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=15.9
Q ss_pred CcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChh
Q 031208 28 KTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSL 61 (164)
Q Consensus 28 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 61 (164)
..+.|.++++.++......|...+.++...+..+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 3444455555444444444555555544444333
No 296
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=56.97 E-value=10 Score=22.90 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=38.9
Q ss_pred HHHhcC---ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc
Q 031208 53 ALTIDG---SSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 53 ~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 113 (164)
++.+.. +...++.++.+..+.+-.-.....=-|.-++.+.|+++.|.+..+.+.+. +|+
T Consensus 49 ~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 49 GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 444444 45577888888876551112233445667888999999999999988765 455
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.44 E-value=54 Score=23.74 Aligned_cols=127 Identities=12% Similarity=-0.024 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHhccCC--------CcHhHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCcccH--
Q 031208 14 LLVRKLLDLCSFYGKTDHALLVFSQIRC--------PHVFTWNLMIRALTID-GSSLQALLLYNLMICNGFRPDKFTF-- 82 (164)
Q Consensus 14 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~t~-- 82 (164)
.....+...|.+.|+.++..+++..... ........++..+... +..+.-.++..+..+..- -...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3456678899999999999999987762 2334577888888775 445566666666654321 112233
Q ss_pred ----HHHHHHHHhccchhhHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 83 ----PFVIKACIASLAIEKGKEVHGLAVKAGFSR-----DMFVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 83 ----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
.-+.+.|...|++.+|.+++..+.+.=-.. -..+|-.-++.|...+++.++...+....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 257889999999999999999887642111 13456666788899999999988876543
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.32 E-value=33 Score=22.96 Aligned_cols=115 Identities=8% Similarity=0.015 Sum_probs=60.3
Q ss_pred HHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHHHhccchh
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKACIASLAIE 96 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~~~ 96 (164)
.+...+..|+.+.+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++.... .+.+...+..|+.+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 109 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 456666788888888888764432222112233344566665544 344455665554221 12344445556655
Q ss_pred hHHHHHHHHHHhCCCCchHH---HHHHHHHHHhcCCchhHHHHhcccC
Q 031208 97 KGKEVHGLAVKAGFSRDMFV---QSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
- ++.+.+.|..++... +...+...+..|+.+-+..+++.-.
T Consensus 110 ~----v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 110 T----VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp H----HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred H----HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 3 344444455444322 1344555666777776666666543
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.54 E-value=37 Score=21.26 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=57.8
Q ss_pred HHHHHHHhccC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHHHHHHH
Q 031208 30 DHALLVFSQIR--CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 30 ~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
+.+.+.|.... ..|..-....| -|+... +++.++|..|..+|+.-.. .-|......+-..|++..|.+++..-.
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl-~ya~~~--~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWL-KLGRLC--NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHH-HHHHHC--SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHH-HHHHhc--CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444433 34544333333 223322 4577899999999988765 467777788888999999999999999
Q ss_pred HhCCCCchHHH
Q 031208 107 KAGFSRDMFVQ 117 (164)
Q Consensus 107 ~~g~~~~~~~~ 117 (164)
+.+-.|-...-
T Consensus 124 ~~~A~P~~~L~ 134 (164)
T 2wvi_A 124 QQKAEPLERLQ 134 (164)
T ss_dssp HTTCBSHHHHH
T ss_pred HcCCCcHHHHH
Confidence 99888875443
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.23 E-value=17 Score=22.53 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=25.6
Q ss_pred HHHHHhccCCcHHHHHHHhccCCC---cHhHHHHHHHHHHhcCChhHHHHHH
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRCP---HVFTWNLMIRALTIDGSSLQALLLY 67 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 67 (164)
.+...++.|+.+-+..+++.-..+ |..-++.+. ..+..|+.+-+..++
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL-YAGAQGRTEILAYML 92 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 455566777888777777754432 222233333 334556655444444
No 301
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=53.84 E-value=44 Score=21.94 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=47.0
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc-----hhhHHHHHHHHHHhCCCCch
Q 031208 48 NLMIRALTI---DGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA-----IEKGKEVHGLAVKAGFSRDM 114 (164)
Q Consensus 48 ~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~ 114 (164)
--+|+++.| -++++.|+-.+.+|.+.|-.|.-..--.++-+.--.|. ...|...++....-|.+--.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 110 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 345566644 58999999999999999988877766666666655553 33466667777777864433
No 302
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.51 E-value=51 Score=22.58 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=68.2
Q ss_pred HHHhccCCcHHHHHHHhccC--CC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc----cHHHHHHHHHhcc
Q 031208 21 DLCSFYGKTDHALLVFSQIR--CP-HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF----TFPFVIKACIASL 93 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~ 93 (164)
....+.|+++.|.+-...-. +| |...-..++..+|-.|+++.|..-++...+. .|+.. +|..+|+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH------
Confidence 44567888999888776543 34 7777888999999999999999988888663 34432 3333332
Q ss_pred chhhHHHHHHHHHHhCCCC-----chHHHHHHHHHHH--hcCCchhHHHHhccc
Q 031208 94 AIEKGKEVHGLAVKAGFSR-----DMFVQSTLMDLYL--KCGDVDGGRKMFDKM 140 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~-----~~~~~~~ll~~~~--~~~~~~~a~~~~~~m 140 (164)
|+..-.++...+-.| ...-...++.+.. ..|+.+.|.++-.+.
T Consensus 77 ----aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 77 ----AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp ----HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 233333433333333 2224445555554 458888888776655
No 303
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=53.32 E-value=23 Score=24.80 Aligned_cols=76 Identities=11% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH---hcCCchhHHHHhcccCC
Q 031208 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL---KCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 67 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~ 142 (164)
++.+.+.|+.|...++.-++..+.+.=.++.+..+|+-+...|...-..+.-+++..+. -..++++...++..++.
T Consensus 216 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~ 294 (334)
T 2qq8_A 216 FAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPE 294 (334)
T ss_dssp HHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCT
T ss_pred HHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Confidence 34445567778777777777777777778888888888877663211112222222221 23456667777776653
No 304
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.11 E-value=16 Score=26.10 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC--chhHHHHhcccCCCCcchHHHHHHHH
Q 031208 82 FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD--VDGGRKMFDKMRVRSVVSWTTMISGL 155 (164)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~li~~~ 155 (164)
...++.=|...++.++|.+.++++....+. ...+..++..+.-+.++ -+....++..+...+..+-+.+..|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 455666666666666666666666422111 12333333333333222 23344555554444444444444443
No 305
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.87 E-value=56 Score=22.83 Aligned_cols=67 Identities=12% Similarity=-0.070 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccch----hhHHHHHHHHHHhCCCCchHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI----EKGKEVHGLAVKAGFSRDMFVQSTLM 121 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~~~~~~~~~ll 121 (164)
+|-++..-|.+.+++++|.+++..=- ..+.+.|.. +.|.-+++-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45556666677777777777654431 112223333 23334455555667777777777777
Q ss_pred HHHHhc
Q 031208 122 DLYLKC 127 (164)
Q Consensus 122 ~~~~~~ 127 (164)
..+...
T Consensus 100 ~l~~~~ 105 (312)
T 2wpv_A 100 RLIAEL 105 (312)
T ss_dssp HHHTTC
T ss_pred HHHHHC
Confidence 666553
No 306
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=52.17 E-value=31 Score=23.05 Aligned_cols=79 Identities=6% Similarity=0.098 Sum_probs=58.3
Q ss_pred cHHHHHHHhccCC-----------CcHhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-CcccHHHHHH
Q 031208 29 TDHALLVFSQIRC-----------PHVFTWNLMIRALTIDG---------SSLQALLLYNLMICNGFRP-DKFTFPFVIK 87 (164)
Q Consensus 29 ~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~ 87 (164)
.+.|..++.+|-- ....-|..+..+|++.| +.+...++++...+.|++. =++.|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 4677777777752 34566888889999887 5577777888888877654 3467778887
Q ss_pred HHHhccchhhHHHHHHHHHH
Q 031208 88 ACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~ 107 (164)
--.-.-++++..+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 76666788888888888765
No 307
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.99 E-value=70 Score=23.41 Aligned_cols=95 Identities=7% Similarity=-0.057 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---cccHHHHHHHHHhccchhhHHHHHHHHHH--h-C-CCCc--h
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICN--GFRPD---KFTFPFVIKACIASLAIEKGKEVHGLAVK--A-G-FSRD--M 114 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~-g-~~~~--~ 114 (164)
....|...+-..|++.+|.+++.++... |..+. ...+...++.|...+++..|..+...... . . ..|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456777788889999999999998543 32222 23566678888999999999988887642 1 1 1222 2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHhccc
Q 031208 115 FVQSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 115 ~~~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
..+...+..+...+++.+|.+.|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34555666667778888877776655
No 308
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=50.56 E-value=44 Score=21.00 Aligned_cols=100 Identities=10% Similarity=0.005 Sum_probs=61.1
Q ss_pred hhcCCCCHHHH--HHHHHHHhccCCcHHHHHHHhccC-----CCcH-------hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 031208 6 RYGLSNDQLLV--RKLLDLCSFYGKTDHALLVFSQIR-----CPHV-------FTWNLMIRALTIDGSSLQALLLYNLMI 71 (164)
Q Consensus 6 ~~g~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~-----~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (164)
..|+.|--..| -.-+..+...|.++.|.-+-+.+. .|+. .+...+-+++...+++..|...|++..
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34666643333 334777888999999998888754 2332 255667788899999999999999963
Q ss_pred Hc-CCCC---C---------------------cccHHHHHHHHHhccchhhHHHHHHHHH
Q 031208 72 CN-GFRP---D---------------------KFTFPFVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 72 ~~-~~~p---~---------------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
+. ..-| + ..-|- +-.+|.+.++.++|..+++.+-
T Consensus 91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHCC--------------------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHHhcCC
Confidence 21 1100 0 01132 5577788899999988877653
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=49.93 E-value=33 Score=21.74 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=8.3
Q ss_pred HHHHhccCCcHHHHHHHh
Q 031208 20 LDLCSFYGKTDHALLVFS 37 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~ 37 (164)
+...++.|+.+....+++
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 333444455555544444
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.87 E-value=4 Score=28.81 Aligned_cols=66 Identities=14% Similarity=-0.068 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc-chhhHHHHHHHHHHhCCCC
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL-AIEKGKEVHGLAVKAGFSR 112 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~ 112 (164)
....++.-|...|+.++|...++++..-...| ......+..+.-+.. .-+.+..++..+.+.|+-+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 35678888999999999998888885322211 122222233332221 2334556666666666533
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.67 E-value=17 Score=25.29 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=13.0
Q ss_pred HHHHHHHHhccchhhHHHHHHHHH
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
..++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 344555555555555555555553
No 312
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.61 E-value=56 Score=21.28 Aligned_cols=62 Identities=5% Similarity=0.076 Sum_probs=45.2
Q ss_pred ccchhhHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHHHH
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTMIS 153 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~ 153 (164)
.+...+...+|..|..+|+... ..-|-..-..+-..|++.+|.++|+.=.+........|..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~ 154 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLR 154 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 3446689999999999998765 4566677777888999999999998655444333344433
No 313
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=47.04 E-value=33 Score=23.22 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=57.9
Q ss_pred cHHHHHHHhccCC-----------CcHhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-CcccHHHHHH
Q 031208 29 TDHALLVFSQIRC-----------PHVFTWNLMIRALTIDG---------SSLQALLLYNLMICNGFRP-DKFTFPFVIK 87 (164)
Q Consensus 29 ~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~ 87 (164)
.+.|..++.+|-- ....-|..+..+|++.| +.+...++++...+.|++. =++.|+++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 4667777777651 34556788888888887 5677788888888888664 4467788887
Q ss_pred HHHhccchhhHHHHHHHHHH
Q 031208 88 ACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~ 107 (164)
--.-.-++++..+++..+++
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 76666788888888887765
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.84 E-value=92 Score=23.60 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH-------HHHHhccchhhHHHHHHHHHH
Q 031208 45 FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVI-------KACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll-------~~~~~~~~~~~a~~~~~~m~~ 107 (164)
..+|.++..|...+.++.|..+..+.. ++.+..+-+-.. +.+.-.+++.+|.+.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 568889999999999999999888774 222323333333 333445677778777776554
No 315
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=46.50 E-value=23 Score=17.67 Aligned_cols=34 Identities=6% Similarity=0.021 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
.++...+..+=++.|-++...+++++...+...|
T Consensus 12 ~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 12 VYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp HHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 4555666666677777777777777777766655
No 316
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=44.80 E-value=44 Score=23.40 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=44.5
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCch---HHHHHHHHHH----HhcCCchhHHHHhcccC
Q 031208 69 LMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDM---FVQSTLMDLY----LKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 69 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~----~~~~~~~~a~~~~~~m~ 141 (164)
.+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...|..... .+.-+++..+ .+..++++...+++.++
T Consensus 234 hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 234 HLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 3344566666666666777777666777777777777766643221 2222333322 23467777777777776
Q ss_pred CC
Q 031208 142 VR 143 (164)
Q Consensus 142 ~~ 143 (164)
..
T Consensus 314 ~~ 315 (345)
T 2qfz_A 314 TA 315 (345)
T ss_dssp CT
T ss_pred Cc
Confidence 44
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.74 E-value=66 Score=21.35 Aligned_cols=85 Identities=8% Similarity=-0.060 Sum_probs=54.3
Q ss_pred HHHHHhccCCcHHHHHHHhccCC-----C-----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRC-----P-----HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKA 88 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 88 (164)
-++.+....++++|.+++++..+ + ....-...+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 47788889999999999887651 1 112233334444444444555555566633 3445555677788
Q ss_pred HHhccchhhHHHHHHHHH
Q 031208 89 CIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~ 106 (164)
+.+.|..++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 899999999988775443
No 318
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=44.67 E-value=42 Score=19.06 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 63 ALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 63 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
+.++.++...-|+.|+.....-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4444444444555555544444444444443
No 319
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=43.68 E-value=30 Score=17.04 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=20.8
Q ss_pred hhHhhhcCCCCHHHHHHHHHHHhccCCcHHHHHHHhc
Q 031208 2 QKIIRYGLSNDQLLVRKLLDLCSFYGKTDHALLVFSQ 38 (164)
Q Consensus 2 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 38 (164)
.+|+..|+.-.-...+.++. .+.|++..|.+++..
T Consensus 15 ~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 15 SQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHHTT
T ss_pred HHHHHcCCCccccHHHHHHH--HccCCHHHHHHHhhh
Confidence 35666666655555555544 466677777666543
No 320
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.82 E-value=32 Score=17.10 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC--chhHHHHhcccCCCC
Q 031208 98 GKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD--VDGGRKMFDKMRVRS 144 (164)
Q Consensus 98 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~ 144 (164)
-.+.++++...|+.+. ....+..+.|. ++.|++++.+|.-|+
T Consensus 9 n~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 3455667777777654 33344555555 778888877776443
No 321
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=42.55 E-value=15 Score=21.58 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=29.2
Q ss_pred ChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCC
Q 031208 59 SSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS 111 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 111 (164)
.++.|.+.+..|++.-+.- .+..||..|..+-..-.-.....+|..+++.++.
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcC
Confidence 5667777777776554432 4456777776664322112224555556655543
No 322
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.02 E-value=31 Score=26.37 Aligned_cols=66 Identities=6% Similarity=-0.023 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcccCCC---CcchHHHHHHHHHhcCCCCC
Q 031208 97 KGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDKMRVR---SVVSWTTMISGLAASGDLDA 163 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 163 (164)
...+.++++..+=---+..--.-++..|.+.|-.+.|.++++.+..+ +...| ..+..|+|.|++++
T Consensus 499 ~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 499 AKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhh
Confidence 34444444443321224556778889999999999999999988754 34455 66777888888764
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.15 E-value=54 Score=19.26 Aligned_cols=44 Identities=14% Similarity=-0.094 Sum_probs=20.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 50 MIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555555555555443334434333444444443
No 324
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=40.94 E-value=20 Score=22.17 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhccchhhHHHHHHHHHHhCCC
Q 031208 59 SSLQALLLYNLMICNGFRP-DKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS 111 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 111 (164)
.++.|.+.+..|++.-+.- .+..||..|..+-..-.-.....+|+.+++.++.
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcc
Confidence 4667777777776544432 4456677766654322111224555556655553
No 325
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.42 E-value=64 Score=19.90 Aligned_cols=55 Identities=7% Similarity=0.013 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchH
Q 031208 61 LQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115 (164)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 115 (164)
+++.++|..|..+|+.-.. .-|......+-..|++.+|.++++.-.+++-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4478888888888877654 456777777888889999999998888887777543
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.65 E-value=68 Score=20.04 Aligned_cols=56 Identities=5% Similarity=0.042 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCchhHHHHhcccCCCCcchHHHH
Q 031208 96 EKGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDKMRVRSVVSWTTM 151 (164)
Q Consensus 96 ~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~l 151 (164)
+....+|..|..+|+... ...|-..-..+-..|++.+|.++|+.=.+.+......|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 457789999999998765 44566667777789999999999986554333333333
No 327
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=39.61 E-value=46 Score=18.09 Aligned_cols=37 Identities=8% Similarity=-0.000 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHHH-HcCCCCCcccHHHHHHHHHhccchh
Q 031208 59 SSLQALLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIE 96 (164)
Q Consensus 59 ~~~~a~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~~~~~ 96 (164)
-.+++...|.+|. ..+|.|+. ||...+...+...++.
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~DpRY~ 52 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDPRYL 52 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCCccc
Confidence 3578888999985 45555554 8888888887766654
No 328
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.58 E-value=50 Score=19.73 Aligned_cols=20 Identities=5% Similarity=-0.167 Sum_probs=9.3
Q ss_pred HHHHhccCCcHHHHHHHhcc
Q 031208 20 LDLCSFYGKTDHALLVFSQI 39 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~ 39 (164)
+..+...++.-.|.++++.+
T Consensus 20 l~~L~~~~~h~sa~eI~~~l 39 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDML 39 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHH
Confidence 44444444444455555444
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.41 E-value=57 Score=21.29 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=30.9
Q ss_pred cHHHHHHHhccCC-CcH-------hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031208 29 TDHALLVFSQIRC-PHV-------FTWNLMIRALTIDGSSLQALLLYNLMIC 72 (164)
Q Consensus 29 ~~~a~~~~~~~~~-~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (164)
++.|..+|+.+.. .|. ..--..+..|.++|.+++|.++|++.-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 5889999998873 221 1123345678899999999999999643
No 330
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.38 E-value=72 Score=20.20 Aligned_cols=118 Identities=7% Similarity=0.019 Sum_probs=63.4
Q ss_pred HHHHHhccCCcHHHHHHHhccC-------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHH
Q 031208 19 LLDLCSFYGKTDHALLVFSQIR-------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKAC 89 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~ 89 (164)
.+...++.|+.+....+++.+. ..|..-++.|. ..+..|+.+ +++.+.+.|..|+.... .+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH-LAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHH-HHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 3566677888888888876321 23433444444 345566654 44555567766654321 2345555
Q ss_pred HhccchhhHHHHHHHHHHhCCCCch--HHHHHHHHHHHhcCCchhHHHHhcccC
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDM--FVQSTLMDLYLKCGDVDGGRKMFDKMR 141 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~ 141 (164)
+..|+.+....+++.....++.++. ..-...+...++.|+.+-...+++.-.
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 140 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 5666665444443332211123322 122244555667788887777776543
No 331
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=38.99 E-value=6.6 Score=26.49 Aligned_cols=38 Identities=18% Similarity=-0.031 Sum_probs=25.4
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 127 (164)
...++.+.+.+.+++....|..|.......++.+.-+.
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~v 84 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVV 84 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44577777888888888777777665555666555433
No 332
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.88 E-value=71 Score=21.15 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 97 KGKEVHGLAVKAGFSRD-MFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 97 ~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
....+|..|..+|+... ...|-..-..+-..|++.+|.++|+.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555554443 22333444444455555555555553
No 333
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.60 E-value=84 Score=20.79 Aligned_cols=55 Identities=7% Similarity=0.005 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchH
Q 031208 61 LQALLLYNLMICNGFRPDK-FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMF 115 (164)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 115 (164)
+++.++|..|...|+.-.. .-|......+-..|++.+|.++++.-.+++-.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 5888999999999988765 467778888899999999999999999988888643
No 334
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=37.81 E-value=68 Score=22.03 Aligned_cols=44 Identities=7% Similarity=0.060 Sum_probs=29.6
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCC
Q 031208 67 YNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 67 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 110 (164)
++.+.+.|+.|...++.-++..+...=.++.+..+|+-+...|.
T Consensus 177 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 177 HSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 33344456777777777777777766667777777777776664
No 335
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.63 E-value=63 Score=19.11 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=15.3
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccC-CcHHHHHHHhcc
Q 031208 4 IIRYGLSNDQLLVRKLLDLCSFYG-KTDHALLVFSQI 39 (164)
Q Consensus 4 m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~ 39 (164)
|.+.|++++.. =..++..+...+ ..-.|.++++.+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l 44 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKAL 44 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHH
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 34445555543 222334444433 444555555554
No 336
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.09 E-value=68 Score=19.24 Aligned_cols=37 Identities=11% Similarity=-0.173 Sum_probs=15.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 031208 56 IDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIAS 92 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 92 (164)
..+..-.|.++++.+.+.+...+..|.--.|+.+...
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 3333444555555554443333333333333333333
No 337
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.05 E-value=77 Score=19.91 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=9.8
Q ss_pred HHHHhccCCcHHHHHHHhcc
Q 031208 20 LDLCSFYGKTDHALLVFSQI 39 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~ 39 (164)
+...++.|+.+.+..+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 44444455555555555443
No 338
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.80 E-value=24 Score=24.53 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=10.3
Q ss_pred HHHHhccCCcHHHHHHHhc
Q 031208 20 LDLCSFYGKTDHALLVFSQ 38 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~ 38 (164)
+...+..|+.+.+..+++.
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444455666666666554
No 339
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=36.59 E-value=55 Score=20.36 Aligned_cols=55 Identities=7% Similarity=-0.025 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCCCcHh--HHHHHHHHHHhcCC--hhHHHHHHHHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRCPHVF--TWNLMIRALTIDGS--SLQALLLYNLM 70 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~m 70 (164)
...+|+-|...++.++|...++++..|+.. ....+|......++ -+.+-.++..+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L 71 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL 71 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566788899999999999999999876532 22333333333332 23444556665
No 340
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=35.66 E-value=1.2e+02 Score=21.60 Aligned_cols=111 Identities=5% Similarity=-0.150 Sum_probs=57.1
Q ss_pred HHHHHHhccCCcHHHHHHHhccC------CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCcccHHHHH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIR------CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGF-----RPDKFTFPFVI 86 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~t~~~ll 86 (164)
+-+..-++.|+.+.+..+++.-. ..|....+.|..+ +..|+.+-+.- +.+.|- .++... .+-+
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A-a~~G~~eiv~~----Ll~~gad~~~~~i~~~~-~TpL 167 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA-AENGHLHVLNR----LCELAPTEIMAMIQAEN-YHAF 167 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH-HHTTCHHHHHH----HHHSCTTTHHHHHSHHH-HHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH-HHcCCHHHHHH----HHhCCCCccccccCCCC-CCHH
Confidence 44566677888888888887644 3444555544444 66677655443 344452 122222 3344
Q ss_pred HHHHhccchhhHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCCchhHHHHhc
Q 031208 87 KACIASLAIEKGKEVHGLAVKAGFSR-----DMFVQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
..-+..|+.+-+. .+.+.|-.+ +..-.++|.-+.++.|+.+-+..+++
T Consensus 168 h~Aa~~G~~eiv~----~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~ 220 (376)
T 2aja_A 168 RLAAENGHLHVLN----RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220 (376)
T ss_dssp HHHHHTTCHHHHH----HHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred HHHHHCCCHHHHH----HHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence 5555667665443 444455442 22334444444326777666555554
No 341
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=35.58 E-value=73 Score=19.21 Aligned_cols=111 Identities=7% Similarity=-0.009 Sum_probs=61.5
Q ss_pred HHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHHHhcc
Q 031208 20 LDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKACIASL 93 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~ 93 (164)
+...++.|+.+.+..+++.-. .+|..-++.|.. .+..|+.+ +++.+.+.|..++.... .+.+...+..|
T Consensus 9 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHW-ACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHH-HHHcCcHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 345567789999998888643 234334444443 35666654 44555556766654321 23444455566
Q ss_pred chhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhcc
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+.+ +++.+.+.|..++... -...+...++.|+.+-+..+++.
T Consensus 84 ~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 127 (179)
T 3f6q_A 84 HRD----IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127 (179)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHH----HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 654 4555556676554321 12334555667777766666654
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.18 E-value=1.4e+02 Score=22.40 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=7.7
Q ss_pred hcCCchhHHHHhcccC
Q 031208 126 KCGDVDGGRKMFDKMR 141 (164)
Q Consensus 126 ~~~~~~~a~~~~~~m~ 141 (164)
+..+...|..+|.+..
T Consensus 468 k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 468 KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHCSHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcC
Confidence 3344555555554444
No 343
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=35.07 E-value=52 Score=17.31 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHH-HcCCCCCcccHHHHHHHHHhccchh
Q 031208 59 SSLQALLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIE 96 (164)
Q Consensus 59 ~~~~a~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~~~~~ 96 (164)
..++|...|.+|. +.++.|+. +|...+..+....++.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~DpRY~ 50 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIINDPRYS 50 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHTSGGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCcccc
Confidence 3578888888884 45555544 8888888777665543
No 344
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=35.06 E-value=86 Score=19.86 Aligned_cols=51 Identities=6% Similarity=-0.112 Sum_probs=40.8
Q ss_pred CCCcccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 031208 76 RPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKC 127 (164)
Q Consensus 76 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 127 (164)
.|....++-++..++....++++.-.+++....|. .+..+|-.-+..++|.
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34455678899999999999999999999999984 6777777777766654
No 345
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=34.85 E-value=71 Score=19.04 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=53.1
Q ss_pred HHHHhccCCcHHHHHHHhccCC----CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc--HHHHHHHHHhcc
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC----PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT--FPFVIKACIASL 93 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~ 93 (164)
+...++.|+.+....+++.-.. +|..-++.|..+ +..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFGEIETV----RFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH-HHTTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH-HHcCCHHHH----HHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 4445667778877777776432 333334444433 455655443 33334454444321 112344445555
Q ss_pred chhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhcc
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+.+ +++.+.+.|..++... -...+...++.|+.+-+..+++.
T Consensus 81 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 124 (172)
T 3v30_A 81 YTD----IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124 (172)
T ss_dssp CHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 554 3344444554443211 11233444556776666666553
No 346
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=34.78 E-value=54 Score=19.47 Aligned_cols=50 Identities=8% Similarity=-0.164 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC-CcHhHHHHHHHHHHhcCChhHHHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC-PHVFTWNLMIRALTIDGSSLQALL 65 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~ 65 (164)
|...|...+..++.+-|.++++-+.+ .+...|...+..|-..=++|-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSCSHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHHhccChHHHHH
Confidence 44455555666666666666665543 455555555555555555555443
No 347
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.73 E-value=1.2e+02 Score=23.24 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=17.9
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhH
Q 031208 81 TFPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGG 133 (164)
Q Consensus 81 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 133 (164)
.-.-++..|.+.|-.+.|.++.+.+-..-+. +...+ ..|..|+|+|+++..
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 4456677777777777777776665433221 22233 555667777766654
No 348
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.54 E-value=94 Score=20.13 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=64.6
Q ss_pred HHHHHHHhccCCcHHHHHHHhccCCCcH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc--HHHHHHHHH
Q 031208 17 RKLLDLCSFYGKTDHALLVFSQIRCPHV----FTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT--FPFVIKACI 90 (164)
Q Consensus 17 ~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~ 90 (164)
++.+...++.|+++....+++.-..++. .-++. +...+..|+.+ +++.+.+.|..|+... -.+.+...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH-HHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 3456777888999999988886553322 12333 44445667664 4455556666655421 123444455
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhccc
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
..|+.+ +++.+.+.|..++... -...+...++.|+.+-...+++.-
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence 566654 4455555665554221 112344556778877777776653
No 349
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=34.19 E-value=58 Score=17.63 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=19.2
Q ss_pred CCCCCcccHHHHHHHHHhccchhhHHHHHHH
Q 031208 74 GFRPDKFTFPFVIKACIASLAIEKGKEVHGL 104 (164)
Q Consensus 74 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 104 (164)
+++|+..||+-+....-+..-...+..+.++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4677888888777766555444444444443
No 350
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=32.47 E-value=55 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=33.3
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHHHhC
Q 031208 66 LYNLMICNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAVKAG 109 (164)
Q Consensus 66 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 109 (164)
+++.+.+.|+.|....+.-++..+.+.=.++.+..+|+.+...|
T Consensus 218 L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 34444556788888888888888887778888899998887766
No 351
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=32.33 E-value=1.2e+02 Score=20.51 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=64.6
Q ss_pred HHHHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHHHh
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKACIA 91 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~ 91 (164)
.-+...++.|+.+....++.... .+|..-.+.|. ..+..|+.+-+ +.+.+.|..++.... .+.+...+.
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~-~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH-LAAGYNRVRIV----QLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHcCCHHHH----HHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 34666678999999999988643 12333333444 44566776544 444556666554321 134445556
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhccc
Q 031208 92 SLAIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDKM 140 (164)
Q Consensus 92 ~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m 140 (164)
.|+.+ +++.+.+.|..++... -...+...++.|+.+-+..+++.-
T Consensus 101 ~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (351)
T 3utm_A 101 YGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147 (351)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 66655 4555556665554321 113344556778888777777653
No 352
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=31.84 E-value=64 Score=20.20 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=9.7
Q ss_pred HHHHhccCCcHHHHHHHhc
Q 031208 20 LDLCSFYGKTDHALLVFSQ 38 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~ 38 (164)
+...++.|+.+.+..+++.
T Consensus 29 L~~A~~~g~~~~v~~Ll~~ 47 (223)
T 2f8y_A 29 LHLAARYSRSDAAKRLLEA 47 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 4444455555555555544
No 353
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=31.30 E-value=76 Score=18.09 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHH
Q 031208 15 LVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKAC 89 (164)
Q Consensus 15 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~ 89 (164)
.-.+.+...++.|+.+....+++.-.. .|..-++.|..+ +..|+.+ +.+.+.+.|..++.... .+.+...
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA-TAHGHLE----IVEVLLKNGADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 344556677788888888888876443 233334444443 3455544 33444455655543221 1233444
Q ss_pred HhccchhhHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCchhHH
Q 031208 90 IASLAIEKGKEVHGLAVKAGFSRDMF--VQSTLMDLYLKCGDVDGGR 134 (164)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~ 134 (164)
+..|+.+ +++.+.+.|..++.. .-...+...++.|+.+-+.
T Consensus 88 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~ 130 (136)
T 2jab_A 88 AFIGHLE----IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130 (136)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHH----HHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHH
Confidence 4555554 344444556544321 1112334444555555443
No 354
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.24 E-value=55 Score=16.47 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=17.3
Q ss_pred hcCChhHHHHHHHHHHHcC-CCCCc
Q 031208 56 IDGSSLQALLLYNLMICNG-FRPDK 79 (164)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~-~~p~~ 79 (164)
...+++.|...|.++...| ++|+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3568999999999997554 55543
No 355
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=30.76 E-value=48 Score=15.64 Aligned_cols=9 Identities=33% Similarity=0.283 Sum_probs=4.6
Q ss_pred CCcHHHHHH
Q 031208 27 GKTDHALLV 35 (164)
Q Consensus 27 ~~~~~a~~~ 35 (164)
|+++.|.++
T Consensus 34 gnv~~Ave~ 42 (46)
T 2bwb_A 34 GSVQGALDS 42 (46)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555555543
No 356
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=30.48 E-value=81 Score=18.18 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=33.8
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCcccHHHHHHHHHhccchhhHHHHHHHHH
Q 031208 43 HVFTWNLMIRALTIDGSSLQALLLYNLMI-CNGFRPDKFTFPFVIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
|......++..+-.. ++.++++.+... ..|+ .+.++..+++...+.|-+++. +.|..|.
T Consensus 20 ~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 20 DEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLEML 79 (119)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHHHH
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 444444444443322 455555555543 3565 466778888888888877666 4444443
No 357
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.47 E-value=1e+02 Score=19.23 Aligned_cols=60 Identities=7% Similarity=-0.101 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CcccHHHHHH------HHHhccchhhHHHHHHHHHH
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRP--DKFTFPFVIK------ACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~------~~~~~~~~~~a~~~~~~m~~ 107 (164)
|..-+..|-. |++-+|.+++++.-...-.| ....|-.||. ...+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444 89999999999986554444 3344555555 12446888888888887754
No 358
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=30.44 E-value=60 Score=21.19 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=7.7
Q ss_pred HHHhccCCcHHHHHHHh
Q 031208 21 DLCSFYGKTDHALLVFS 37 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~ 37 (164)
...+..|..+.+..+++
T Consensus 83 ~~A~~~~~~~~v~~Ll~ 99 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQ 99 (282)
T ss_dssp HHHTTTTCHHHHHHHSS
T ss_pred HHHHHcCCcchhHhhhc
Confidence 33344455544444444
No 359
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.25 E-value=25 Score=22.96 Aligned_cols=41 Identities=5% Similarity=-0.129 Sum_probs=25.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccc
Q 031208 54 LTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 94 (164)
....++-+.+.+++++....|..|.......++.+..+-|+
T Consensus 12 al~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~ 52 (215)
T 3ezx_A 12 AIVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGD 52 (215)
T ss_dssp HHHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777766655554555555555544
No 360
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.38 E-value=87 Score=19.75 Aligned_cols=25 Identities=8% Similarity=-0.096 Sum_probs=12.2
Q ss_pred HHHHHhccchhhHHHHHHHHHHhCC
Q 031208 86 IKACIASLAIEKGKEVHGLAVKAGF 110 (164)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~g~ 110 (164)
+...+..|+.+.+..+++.+.+.|-
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444444555555555555555443
No 361
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.14 E-value=1.4e+02 Score=20.30 Aligned_cols=76 Identities=11% Similarity=-0.089 Sum_probs=39.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCccc---HHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 031208 53 ALTIDGSSLQALLLYNLMICNGFRPDKFT---FPFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYLKCGD 129 (164)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 129 (164)
..+..|..+.+..++. ..|..++... .+.| ..-++.|+.+ +++.+.+.|-.++..+ .+..-++.|+
T Consensus 245 ~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL-~~A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~ 313 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTAL-LLAVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYD 313 (337)
T ss_dssp HHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHH-HHHHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTC
T ss_pred HHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCC
Confidence 3456676665544332 2344443321 2233 3344556554 4455566777776543 3444556777
Q ss_pred chhHHHHhcc
Q 031208 130 VDGGRKMFDK 139 (164)
Q Consensus 130 ~~~a~~~~~~ 139 (164)
.+-+.-+++.
T Consensus 314 ~~iv~~Ll~~ 323 (337)
T 4g8k_A 314 HSLVKVLLSH 323 (337)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 7766655553
No 362
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=28.96 E-value=93 Score=18.37 Aligned_cols=110 Identities=9% Similarity=0.089 Sum_probs=53.9
Q ss_pred HHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHHHhccc
Q 031208 20 LDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKACIASLA 94 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~ 94 (164)
+...++.|+.+....+++.-.. +|..-++.+..+ +..|+.+ +++.+.+.|..|+.... .+.+...+..|+
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA-AAHGQIA----VVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHH-HHCCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 4455667777777777765432 233333444433 4555544 33444455655543221 123444455555
Q ss_pred hhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhc
Q 031208 95 IEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
.+ +++.+.+.|..++... -...+...++.|+.+-+..+++
T Consensus 82 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (167)
T 3v31_A 82 TD----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123 (167)
T ss_dssp HH----HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HH----HHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 54 3344444555443221 1123444455677766666665
No 363
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.78 E-value=43 Score=16.90 Aligned_cols=24 Identities=17% Similarity=-0.029 Sum_probs=15.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC
Q 031208 55 TIDGSSLQALLLYNLMICNGFRPD 78 (164)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~ 78 (164)
...|+.+.|...+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 345677777777777766666664
No 364
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=28.76 E-value=79 Score=20.98 Aligned_cols=109 Identities=11% Similarity=-0.040 Sum_probs=47.2
Q ss_pred HHHHhccCCcHHHHHHHhccCCCc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc---HHHHHHHHHhcc
Q 031208 20 LDLCSFYGKTDHALLVFSQIRCPH---VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT---FPFVIKACIASL 93 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~ 93 (164)
+...+..|+.+-+..+++.-..++ ..-.+.+. ..+..+..+ +.+.+.+.|..|+... .+.| ...+..|
T Consensus 90 Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~-~a~~~~~~~----~~~~Ll~~g~~~n~~d~~g~TpL-~~A~~~g 163 (269)
T 4b93_B 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLH-LACQQGHFQ----VVKCLLDSNAKPNKKDLSGNTPL-IYACSGG 163 (269)
T ss_dssp HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTCCCHH-HHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccc-cccccChHH----HHHHHHHCCCCCCCCCCCCCCHH-HHHHHCC
Confidence 334455666666666665433211 11112222 222333332 3344455566555432 2233 3334556
Q ss_pred chhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhc
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
+.+-+.. +.+.|..++... -...+..-+..|+.+-+.-+++
T Consensus 164 ~~~~v~~----Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 206 (269)
T 4b93_B 164 HHELVAL----LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206 (269)
T ss_dssp CGGGHHH----HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHH----HHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 6554333 344555443211 1123344455666665555554
No 365
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=28.69 E-value=91 Score=18.15 Aligned_cols=113 Identities=10% Similarity=-0.011 Sum_probs=54.1
Q ss_pred HHHHHHhccCCcHHHHHHHhccCC--CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccH--HHHHHHHHhcc
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRC--PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTF--PFVIKACIASL 93 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~ 93 (164)
+.+...++.|+.+....+++.-.. .+..-++.+.. .+..|+.+ +++.+.+.|..++.... .+.+...+..|
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHL-AAQYGHFS----TTEVLLRAGVSRDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHH-HHHHTCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 345556667777777777775442 22222333333 34445544 33444455555543211 12333344455
Q ss_pred chhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhcc
Q 031208 94 AIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+.+ +++.+.+.|..++... -...+...++.|+.+-+..+++.
T Consensus 79 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 122 (153)
T 1awc_B 79 HAN----IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122 (153)
T ss_dssp CHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 554 3444445565443221 11234444556776666666554
No 366
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.53 E-value=1.1e+02 Score=18.98 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=55.6
Q ss_pred HHHhccCCcHHHHHHHhccCC-Cc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc---HHHHHHHHHhc-cc
Q 031208 21 DLCSFYGKTDHALLVFSQIRC-PH-VFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT---FPFVIKACIAS-LA 94 (164)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~-~~ 94 (164)
...++.|+++....+++.-.. .+ ..-++.| ...+..|..+.-.++.+.+.+.|..++... .+.|..++... .+
T Consensus 11 ~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~L-h~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEKGYEDKESVLKSNIL-YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHH-HHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCHH-HHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 344577888888888775432 22 2223444 444666777777788888888888777532 23343333222 23
Q ss_pred hhhHHHHHHHHHHhCCCCc
Q 031208 95 IEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 95 ~~~a~~~~~~m~~~g~~~~ 113 (164)
+....++.+.+.+.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3445677888888887665
No 367
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.26 E-value=1.1e+02 Score=21.91 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----cccHHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCc
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPD----KFTFPFVIKACIASLA-IEKGKEVHGLAVKAGFSRD 113 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~ 113 (164)
....+|.-|...|+.++|...++++.. |+ ...+..+..++-+... -+.+-.++..+...|+-+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 457789999999999999999999853 43 2233334444433321 2345566666666665443
No 368
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.07 E-value=65 Score=16.79 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=5.0
Q ss_pred CChhHHHHHH
Q 031208 58 GSSLQALLLY 67 (164)
Q Consensus 58 ~~~~~a~~~~ 67 (164)
|+++.|++.+
T Consensus 46 Gnve~Ave~L 55 (67)
T 2dna_A 46 GDTNAAIYKL 55 (67)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555555443
No 369
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.05 E-value=85 Score=18.96 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=29.5
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccC-CcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChh
Q 031208 4 IIRYGLSNDQLLVRKLLDLCSFYG-KTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSL 61 (164)
Q Consensus 4 m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~ 61 (164)
|.+.|++++.. =..++..+...+ ..-.|.++++.+. ..+..|.-.-|..+...|-+.
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45566666654 233344555544 5556666666663 234444444445555555443
No 370
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=27.02 E-value=41 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHhcccCC
Q 031208 116 VQSTLMDLYLKCGDVDGGRKMFDKMRV 142 (164)
Q Consensus 116 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 142 (164)
.-|.++..|...|+++.|.++|+.++.
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 447888999999999999999998773
No 371
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=27.00 E-value=1.1e+02 Score=18.60 Aligned_cols=108 Identities=11% Similarity=0.025 Sum_probs=52.0
Q ss_pred HHHHHhccCCcHHHHHHHhccCCC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc---cHHHHHHHHHhc
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRCP---HVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF---TFPFVIKACIAS 92 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~ 92 (164)
|+. -++.|+.+.+..+++.-..+ |..-++.+.. .+..+..+-+.. +.+.|..++.. -.+.|. ..+..
T Consensus 8 L~~-Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~-a~~~~~~~~~~~----ll~~gad~~~~d~~g~TpLh-~A~~~ 80 (169)
T 4gpm_A 8 LIE-AAENGNKDRVKDLIENGADVNASDSDGRTPLHH-AAENGHKEVVKL----LISKGADVNAKDSDGRTPLH-HAAEN 80 (169)
T ss_dssp HHH-HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHH-HHHHT
T ss_pred HHH-HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHHcCCHHHHHH----HHhcccchhhhccCCCCHHH-HHHHc
Confidence 443 44678888888887754332 2222333333 344555544333 33455544432 222333 33445
Q ss_pred cchhhHHHHHHHHHHhCCCCchH---HHHHHHHHHHhcCCchhHHHHhc
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMF---VQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
|+.+ +++.+.+.|..++.. -+++ +..-++.|+.+-+..+++
T Consensus 81 g~~~----~v~~Ll~~gadvn~~d~~G~Tp-Lh~A~~~g~~~~v~~Ll~ 124 (169)
T 4gpm_A 81 GHKE----VVKLLISKGADVNAKDSDGRTP-LHHAAENGHKEVVKLLIS 124 (169)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred CCHH----HHHHHHHCcCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence 5544 344445566554422 2223 333455677666666655
No 372
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=26.72 E-value=71 Score=17.88 Aligned_cols=52 Identities=15% Similarity=-0.025 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHcCCCCC---cccHHHHHHHHHhccchhhHHHHHHHHHHhCCC
Q 031208 60 SLQALLLYNLMICNGFRPD---KFTFPFVIKACIASLAIEKGKEVHGLAVKAGFS 111 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 111 (164)
++.|++++.-|-...-.|. +.|-.-+++.+-..|-...+..+...-.+.|..
T Consensus 13 IdKALDFI~~M~tSas~P~sMdESTAKGifKyL~elGvPas~~dv~aRg~qegWn 67 (115)
T 2es9_A 13 IEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWN 67 (115)
T ss_dssp HHHHHHHHHTSCTTCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCC
Confidence 3555566555533333332 233333444444444444444444444444443
No 373
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.60 E-value=1.6e+02 Score=20.24 Aligned_cols=14 Identities=0% Similarity=-0.315 Sum_probs=5.7
Q ss_pred hccchhhHHHHHHH
Q 031208 91 ASLAIEKGKEVHGL 104 (164)
Q Consensus 91 ~~~~~~~a~~~~~~ 104 (164)
..|+.+-+..+++.
T Consensus 93 ~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 93 MANKTDLVVALVEG 106 (364)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 33444444444433
No 374
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.31 E-value=75 Score=18.50 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred HHHHHHhccCCcHHHHHHHhccC-C---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc---cHHHHHHHHH
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIR-C---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF---TFPFVIKACI 90 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~ 90 (164)
+.+...++.|+.+.+..+++... . .|..-++.+.. +..|+.+-+ +.+.+.|..++.. -.+ .+...+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~ 76 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTAIA----LELLKQGASPNVQDTSGTS-PVHDAA 76 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCCHHHH----HHHHHCCCCCCCcCCCCCC-HHHHHH
Confidence 34566777899999999998721 2 23333444443 666776544 4444556655442 223 344445
Q ss_pred hccchhhHHHHHHHHHHhCCCCch---HHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDM---FVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
..|+.+ +++.+.+.|..++. .-. ..+...++.|+.+-+..+++.
T Consensus 77 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 77 RTGFLD----TLKVLVEHGADVNVPDGTGA-LPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HTTCHH----HHHHHHHTTCCSCCCCTTSC-CHHHHHHHHTCHHHHHHHHTT
T ss_pred HcCcHH----HHHHHHHcCCCCCCcCCCCC-cHHHHHHHhChHHHHHHHHhc
Confidence 556665 44445556655432 222 334555677888877777766
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.73 E-value=2.8e+02 Score=22.75 Aligned_cols=127 Identities=6% Similarity=-0.006 Sum_probs=67.4
Q ss_pred HHHHHhccCCcHHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccchhhH
Q 031208 19 LLDLCSFYGKTDHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAIEKG 98 (164)
Q Consensus 19 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 98 (164)
++..|...|..+.|.++..-++.....+| .+-.+|...|++++|...|.+.- .|+..+....... ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~y-v~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------REF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHH-HHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------HHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------hhh
Confidence 55666677777777776665554333333 34455677888888888887753 2333222111000 000
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchhHHHHhcc----cCCCC----cchHHHHHHHHHhcC
Q 031208 99 KEVHGLAVKAGFSRDMFVQSTLMDLYLKCGDVDGGRKMFDK----MRVRS----VVSWTTMISGLAASG 159 (164)
Q Consensus 99 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~----~~~~~~li~~~~~~g 159 (164)
..++.... .-.....-|..++..+-+.+-++.+.++-+- +...| ...|+.++.+.+..|
T Consensus 884 ~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01111000 0011223677778888888887776554442 22222 237777888777655
No 376
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.67 E-value=78 Score=16.40 Aligned_cols=42 Identities=7% Similarity=-0.072 Sum_probs=21.1
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKAGFSRDMFVQSTLMDLYL 125 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 125 (164)
+-++..++....++++.-.+++..+.| ..+...|-.-+...+
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 445555555555555555555555555 244444444444333
No 377
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=25.59 E-value=1.4e+02 Score=19.17 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=47.9
Q ss_pred hHhhhcCCCC-----HHHHHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 031208 3 KIIRYGLSND-----QLLVRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNG 74 (164)
Q Consensus 3 ~m~~~g~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (164)
.+.+.|..|+ ...-.+.+...++.|+.+.+..+++.-.. .|..-++.|..+ +..|+.+-+ +.+.+.|
T Consensus 3 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A-~~~g~~~~v----~~Ll~~g 77 (229)
T 2vge_A 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA-ICGANYSIV----DFLITAG 77 (229)
T ss_dssp -------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH-HHTTCHHHH----HHHHHTT
T ss_pred ehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCHHHH----HHHHHCC
Confidence 4455555543 12233456666778888888888876443 233334444444 455665443 4444556
Q ss_pred CCCCcc---cHHHHHHHHHhccchhhHHHHHHHHHHhCCCC
Q 031208 75 FRPDKF---TFPFVIKACIASLAIEKGKEVHGLAVKAGFSR 112 (164)
Q Consensus 75 ~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 112 (164)
..++.. -.+. +...+..|+.+- ++.+.+.|..+
T Consensus 78 a~~n~~d~~g~tp-Lh~A~~~g~~~~----v~~Ll~~ga~~ 113 (229)
T 2vge_A 78 ANVNSPDSHGWTP-LHCAASCNDTVI----CMALVQHGAAI 113 (229)
T ss_dssp CCTTCCCTTCCCH-HHHHHHTTCHHH----HHHHHTTTCCT
T ss_pred CCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHHcCCCc
Confidence 655443 2233 344445566543 34444455444
No 378
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.18 E-value=40 Score=16.49 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.6
Q ss_pred cchhhHHHHHHHHHHhCCCCch
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDM 114 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~ 114 (164)
.|+..|.++++.+++.|--|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 4667778888888777765554
No 379
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.99 E-value=74 Score=15.92 Aligned_cols=8 Identities=50% Similarity=0.318 Sum_probs=3.6
Q ss_pred CChhHHHH
Q 031208 58 GSSLQALL 65 (164)
Q Consensus 58 ~~~~~a~~ 65 (164)
|+++.|.+
T Consensus 44 gnve~Ave 51 (58)
T 1wr1_B 44 GSVQGALD 51 (58)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 44444444
No 380
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=24.61 E-value=1.3e+02 Score=18.58 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhccch--hhHHHHHHHHHHhCCCCc--hHHHHHHHHHH
Q 031208 60 SLQALLLYNLMICNGFRPDKFTFPFVIKACIASLAI--EKGKEVHGLAVKAGFSRD--MFVQSTLMDLY 124 (164)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~ 124 (164)
.+++.+..-++-+.|..|+.. ..+++-..--.+. -.+..+.+-++++|+.|+ +..|+.+=.+-
T Consensus 30 ~eeVe~~I~klakkG~tpSqI--G~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv 96 (151)
T 3u5c_N 30 SESVIEQIVKYARKGLTPSQI--GVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAV 96 (151)
T ss_dssp HHHHHHHHHHHHTTTCCHHHH--HHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHh--hhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHH
Confidence 566677777777777777653 3344433222222 234556677777787664 55666554443
No 381
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=24.61 E-value=55 Score=14.30 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=15.3
Q ss_pred HHHHHHhccchhhHHHHHHHHH
Q 031208 85 VIKACIASLAIEKGKEVHGLAV 106 (164)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~ 106 (164)
-+..|...|..++|..+-.+++
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3566777777777777766664
No 382
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.52 E-value=1.3e+02 Score=18.49 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCcccHHHHHHHHHhccc
Q 031208 48 NLMIRALTIDGSSLQALLLYNLMICN--GFRPDKFTFPFVIKACIASLA 94 (164)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~ 94 (164)
..++..+...+..-.|.++++.+.+. +...+..|.=--|+.+...|-
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 44455555555666677777776655 444444444444445555443
No 383
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.40 E-value=80 Score=20.16 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=27.4
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhcC
Q 031208 83 PFVIKACIASLAIEKGKEVHGLAVKA-------GFSRDMFVQSTLMDLYLKCG 128 (164)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~~ 128 (164)
-.+|.++.+.|++++|.++..++... ....++.+-..|+.-+.+..
T Consensus 36 LqvI~GLlql~~ydea~~yI~~~~~~~q~~~~~~~i~~P~la~lLl~K~~~a~ 88 (192)
T 1ixm_A 36 LQLIKGNLSLQKYDRVFEMIEEMVIDAKHESKLSNLKTPHLAFDFLTFNWKTH 88 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHGGGSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 35677888888888888777765432 11344555555555544443
No 384
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.39 E-value=1.4e+02 Score=19.04 Aligned_cols=56 Identities=9% Similarity=-0.000 Sum_probs=30.8
Q ss_pred HHHHHHhccCCcH---HHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 031208 18 KLLDLCSFYGKTD---HALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICN 73 (164)
Q Consensus 18 ~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (164)
..+.-+.+.|+++ .|.++.+.|...+...-.-+-........+..-.+++.+|...
T Consensus 36 a~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~ 94 (186)
T 1oxz_A 36 KMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMS 94 (186)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666776544 7788887776433322111112222333456677788888764
No 385
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.22 E-value=1.3e+02 Score=18.61 Aligned_cols=74 Identities=8% Similarity=-0.018 Sum_probs=34.6
Q ss_pred HHHHHHhccCCc---HHHHHHHhccCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------CcccHHHHHHH
Q 031208 18 KLLDLCSFYGKT---DHALLVFSQIRCPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRP------DKFTFPFVIKA 88 (164)
Q Consensus 18 ~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~t~~~ll~~ 88 (164)
..+.-+.+.|++ +.|.++.+.|...+...-.-+-.....-.....-.+++.+|...-.+. +..++.-|...
T Consensus 20 ~~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~ 99 (158)
T 1naf_A 20 KMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQR 99 (158)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHH
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHH
Confidence 455555565543 467777777664332211111111122223444577778876542111 33455555555
Q ss_pred HHh
Q 031208 89 CIA 91 (164)
Q Consensus 89 ~~~ 91 (164)
|-+
T Consensus 100 Ck~ 102 (158)
T 1naf_A 100 CER 102 (158)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 386
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.08 E-value=1.4e+02 Score=19.21 Aligned_cols=87 Identities=5% Similarity=-0.031 Sum_probs=48.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhc---cchhhHHHHHHHHHHhCCCC--------
Q 031208 51 IRALTIDGSSLQALLLYNLMICNGFRPDK-------FTFPFVIKACIAS---LAIEKGKEVHGLAVKAGFSR-------- 112 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~~---~~~~~a~~~~~~m~~~g~~~-------- 112 (164)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 34456778888777777777776665543 2233343 33444 77776666665544332110
Q ss_pred --chHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 113 --DMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 113 --~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
+..-. ..+...++.|+.+-+..+++.
T Consensus 85 ~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 85 DEFYQGH-SALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp STTTTTC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 11122 234445567777777766664
No 387
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=23.51 E-value=1.2e+02 Score=17.94 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=61.7
Q ss_pred HHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc--HHHHHHHHHhc
Q 031208 18 KLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT--FPFVIKACIAS 92 (164)
Q Consensus 18 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~ 92 (164)
..+...++.|+.+.+..+++.-.. .|..-++.|. ..+..|+.+- ++.+.+.|..++... -.+.+...+..
T Consensus 16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLH-LAAFNGHLEI----VEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 345566778999998888886443 2333334443 3455666554 444455565554432 12344455556
Q ss_pred cchhhHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCchhHHHHhcc
Q 031208 93 LAIEKGKEVHGLAVKAGFSRDMF--VQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 93 ~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
|+.+ +++.+.+.|..++.. .-...+...++.|+.+-+..+++.
T Consensus 91 ~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 135 (169)
T 2y1l_E 91 GHLE----IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135 (169)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 6655 444455566544322 112344555667887777666654
No 388
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.43 E-value=2.3e+02 Score=21.00 Aligned_cols=62 Identities=5% Similarity=-0.031 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc--------cHHHHH-HHHHhccchhhHHHHHHHHHH
Q 031208 46 TWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKF--------TFPFVI-KACIASLAIEKGKEVHGLAVK 107 (164)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------t~~~ll-~~~~~~~~~~~a~~~~~~m~~ 107 (164)
..|.++..|.+.++++.+..+++.+...+..|+.. +|.--+ +.+.-.+++.+|.+.+.+..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 46888999999999999999999998877644332 222221 233455677777766655543
No 389
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=22.86 E-value=82 Score=18.19 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=19.2
Q ss_pred CCcHHHHHHHhccCCCcHhHHHHHHHHH-HhcCChhHHHHHHH
Q 031208 27 GKTDHALLVFSQIRCPHVFTWNLMIRAL-TIDGSSLQALLLYN 68 (164)
Q Consensus 27 ~~~~~a~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~ 68 (164)
.+++.-..-+..|=-.|... .+.++ ...|+++.|++.+-
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~---ni~AL~~t~Gdve~AVe~L~ 103 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDEL---SLRALQATGGDIQAALELIF 103 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHH---HHHHHHHHTSCHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCCHHH---HHHHHHHhCCCHHHHHHHHH
Confidence 34455555555554333221 22222 33477887777654
No 390
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=22.04 E-value=1.2e+02 Score=17.41 Aligned_cols=45 Identities=9% Similarity=-0.107 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHH-H-cCCCCCcccHHHHHHHHHhccchhhHH-HHHHHHH
Q 031208 60 SLQALLLYNLMI-C-NGFRPDKFTFPFVIKACIASLAIEKGK-EVHGLAV 106 (164)
Q Consensus 60 ~~~a~~~~~~m~-~-~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~m~ 106 (164)
++.++++.+... + .|+. +.++..+++...+.|-+++.. +.|..|.
T Consensus 34 ~Elawk~~k~~l~~~~g~~--~~s~rd~~r~a~~~glI~~~~~~~w~~m~ 81 (119)
T 1wwp_A 34 FEAFWKALQAYLREKEGLE--GASPKGVIRLAREVGLLRDEEARLALGMV 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCC--CCSHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 455666666544 2 4554 677788888888888877663 2444443
No 391
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.91 E-value=1.7e+02 Score=18.83 Aligned_cols=88 Identities=14% Similarity=-0.006 Sum_probs=47.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCccc-------HHHHHHHHH--hccchhhHHHHHHHHHHhCC---------C-
Q 031208 51 IRALTIDGSSLQALLLYNLMICNGFRPDKFT-------FPFVIKACI--ASLAIEKGKEVHGLAVKAGF---------S- 111 (164)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~---------~- 111 (164)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3344677888887777777777666665332 244444432 56777766666665433110 0
Q ss_pred CchHHHHHHHHHHHhcCCchhHHHHhcc
Q 031208 112 RDMFVQSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 112 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
.+..-+ ..+...+..|+.+-+..+++.
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHHT
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 000112 234444566777766666654
No 392
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.57 E-value=1e+02 Score=16.34 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=4.2
Q ss_pred CChhHHHHH
Q 031208 58 GSSLQALLL 66 (164)
Q Consensus 58 ~~~~~a~~~ 66 (164)
|+++.|.+.
T Consensus 56 Gnve~Ave~ 64 (74)
T 1vej_A 56 GDIHAAIEM 64 (74)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 445544443
No 393
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=21.48 E-value=79 Score=18.50 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=58.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHhccCC---CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc--HHHHHHHHH
Q 031208 16 VRKLLDLCSFYGKTDHALLVFSQIRC---PHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT--FPFVIKACI 90 (164)
Q Consensus 16 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~ 90 (164)
+.+.+...++.|+.+.+..+++.-.. +|..-++.+..+ +. |+.+ +++.+.+.|..++... -.+.+...+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-~~-~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KL-GNPE----IARRLLLRGANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC-CS-SCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH-Hc-CcHH----HHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 34556667777888888888875443 222333444332 22 5554 3344445565554321 122344444
Q ss_pred hccchhhHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCchhHHHHhcc
Q 031208 91 ASLAIEKGKEVHGLAVKAGFSRDMFV--QSTLMDLYLKCGDVDGGRKMFDK 139 (164)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~ 139 (164)
..|+.+ +++.+.+.|..++... -...+...++.|+.+-+..+++.
T Consensus 79 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 125 (162)
T 1ihb_A 79 RAGFLD----TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125 (162)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 556654 4444455565443221 11334445667777766666653
No 394
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=21.35 E-value=1.7e+02 Score=18.84 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=31.7
Q ss_pred HHhccchhhHHHHHHHHHHhCCC----------------C-chHHHHHHHHHHHhcCCchhHHHHhc
Q 031208 89 CIASLAIEKGKEVHGLAVKAGFS----------------R-DMFVQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~g~~----------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
|-+..+...|...++.+....+. . .+.-|+-+-..+...|+-++|.+.|.
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 34445666666666666543332 1 24566677777788899999888764
No 395
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.35 E-value=1.4e+02 Score=17.91 Aligned_cols=47 Identities=6% Similarity=-0.056 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcc
Q 031208 47 WNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFTFPFVIKACIASL 93 (164)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 93 (164)
--.++..+...+..-.|.++++.+.+.+...+..|.=-.|+.+...|
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34455555555566677777777766554444444444455555544
No 396
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=20.99 E-value=1.9e+02 Score=19.09 Aligned_cols=114 Identities=4% Similarity=-0.099 Sum_probs=62.7
Q ss_pred HHHHhccCCcHHHHHHHhccC----CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCccc--HHHHHHHHHhcc
Q 031208 20 LDLCSFYGKTDHALLVFSQIR----CPHVFTWNLMIRALTIDGSSLQALLLYNLMICNGFRPDKFT--FPFVIKACIASL 93 (164)
Q Consensus 20 i~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~ 93 (164)
+...+..|+.+.+..+++.-. ..|..-++.+..+.........-.+++..+.+.|..++... -.+.+...+..|
T Consensus 115 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g 194 (276)
T 4hbd_A 115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHG 194 (276)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 455567788888888877543 23444455555554443334555666666666665444321 123344445566
Q ss_pred chhhHHHHHHHHHHhCCCCch---HHHHHHHHHHHhcCCchhHHHHhc
Q 031208 94 AIEKGKEVHGLAVKAGFSRDM---FVQSTLMDLYLKCGDVDGGRKMFD 138 (164)
Q Consensus 94 ~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~ 138 (164)
+.+ +++.+.+.|..++. .-.+ -+...++.|+.+-+..+++
T Consensus 195 ~~~----~v~~Ll~~gad~n~~d~~G~T-pLh~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 195 RVD----VVKALLACEADVNVQDDDGST-ALMCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHT
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHh
Confidence 654 44555566765542 2223 3444566788777777776
No 397
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.58 E-value=1.5e+02 Score=22.02 Aligned_cols=79 Identities=6% Similarity=-0.049 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHHHc---CCCCCc------------ccHHHHHHHHHhccchhhHHHHHHHHHHhCCCCc--------hH
Q 031208 59 SSLQALLLYNLMICN---GFRPDK------------FTFPFVIKACIASLAIEKGKEVHGLAVKAGFSRD--------MF 115 (164)
Q Consensus 59 ~~~~a~~~~~~m~~~---~~~p~~------------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--------~~ 115 (164)
..+++-+++.++-.. ...|+. ...+.+++.|.+.++...+..++..+...+..|+ .+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 456777777776332 122222 3468889999999999999999999988776332 33
Q ss_pred HHHHHHH-HHHhcCCchhHHHHh
Q 031208 116 VQSTLMD-LYLKCGDVDGGRKMF 137 (164)
Q Consensus 116 ~~~~ll~-~~~~~~~~~~a~~~~ 137 (164)
+|.-.++ .+.-.+++.+|.+-|
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L 243 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQF 243 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeeHHHHHHHHHHccHHHHHHHH
Confidence 4544443 334456666665544
Done!