BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031209
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 36/56 (64%)
Query: 97 SSEKLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 152
S E L+I V+GASGDLAKKK FPALF LY LP D + GYAR+ + D E
Sbjct: 47 SPELRSRALTIVVLGASGDLAKKKTFPALFQLYCNGMLPRDVNILGYARSTMEDVE 102
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 109 VVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 154
++GASGDLAKKKI+P ++ L+ + LPE+ + GYAR++LT ++R
Sbjct: 10 IMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIR 55
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 109 VVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 154
++GASGDLAKKKI+P ++ L+ + LPE+ + GYAR++LT ++R
Sbjct: 35 IMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIR 80
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161
+T G +GDLAK+K++P++F LY + L + F + G AR L D+E + ++ I
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSI 62
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161
+T G +GDLAK+K++P++F LY + L + F + G AR L D+E + ++ I
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSI 62
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161
+T G +GDLAK+K++P++F LY + L + F + G AR L D+E + ++ I
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSI 62
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161
+T G +GDLAK+K++P++F LY + L + F + G AR L D+E + ++ I
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSI 62
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161
+T G +GDLAK+K++P++F LY + L + F + G AR L D+E + ++ I
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCI 62
>pdb|4HBL|A Chain A, Crystal Structure Of Abfr Of Staphylococcus Epidermidis
pdb|4HBL|B Chain B, Crystal Structure Of Abfr Of Staphylococcus Epidermidis
pdb|4HBL|C Chain C, Crystal Structure Of Abfr Of Staphylococcus Epidermidis
pdb|4HBL|D Chain D, Crystal Structure Of Abfr Of Staphylococcus Epidermidis
Length = 149
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 107 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161
I + +G ++ +F A+ + CLP++F Y TK EEL + +I
Sbjct: 98 IITLTDNGQQQQEAVFEAISS-----CLPQEFDTTEYDETKYVFEELEQTLKHLI 147
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 123 PALFALYYEDCLPEDFTVFGYART 146
PAL Y+D P+D TV+ Y RT
Sbjct: 488 PALVYGAYQDLNPQDNTVYAYTRT 511
>pdb|3GYB|A Chain A, Crystal Structure Of A Laci-Family Transcriptional
Regulatory Protein From Corynebacterium Glutamicum
pdb|3GYB|B Chain B, Crystal Structure Of A Laci-Family Transcriptional
Regulatory Protein From Corynebacterium Glutamicum
Length = 280
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 78 KPLANDHSKPQEIEASVPASSEKLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPED 137
+PL+ND+ P A + L +T + +S D+ A L +PED
Sbjct: 148 EPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLR--VPED 205
Query: 138 FTVFGYARTKLTDEELRNVIS 158
++ GY T L L N+ +
Sbjct: 206 LSIIGYDNTPLAQTRLINLTT 226
>pdb|1DBG|A Chain A, Crystal Structure Of Chondroitinase B
pdb|1DBO|A Chain A, Crystal Structure Of Chondroitinase B
Length = 506
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 52 LKSSNGHPLNAVSLQDTAILILGLAGKPLANDHSKP 87
+K + P+ ++L A++ G+ GKPL+ D +P
Sbjct: 437 VKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRP 472
>pdb|1OFM|A Chain A, Crystal Structure Of Chondroitinase B Complexed To
Chondroitin 4-sulfate Tetrasaccharide
pdb|1OFL|A Chain A, Crystal Structure Of Chondroitinase B Complexed To
Dermatan Sulfate Hexasaccharide
Length = 481
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 58 HPLNAVSLQDTAILILGLAGKPLANDHSKP 87
P+ ++L A++ G+ GKPL+ D +P
Sbjct: 418 QPIEGIALDLNALISKGITGKPLSWDEVRP 447
>pdb|1QQS|A Chain A, Neutrophil Gelatinase Associated Lipocalin Homodimer
Length = 174
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 72 ILGLAGKPLANDHSKPQEIEASVPASSEKLGSTLSITVVGASGDLAKKKIFPALFALYYE 131
++GLAG + + PQ++ A++ EK ++ ++T V L +KK +
Sbjct: 30 VVGLAGNAILREDKDPQKMYATI--YEEKEDASYNVTSV-----LFRKKKCDYAIRTFVP 82
Query: 132 DCLPEDFTV 140
C P +FT+
Sbjct: 83 GCQPGEFTL 91
>pdb|2H0M|A Chain A, Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 87 PQEIEASVPASSEKLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTV 140
P+E+ A A E+ GS L VVG + ++ + L A DC +D V
Sbjct: 117 PEELRAIKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDCAIDDAQV 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,566,972
Number of Sequences: 62578
Number of extensions: 164627
Number of successful extensions: 421
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 18
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)