Query 031209
Match_columns 164
No_of_seqs 144 out of 1009
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02640 glucose-6-phosphate 1 100.0 8.9E-34 1.9E-38 262.9 9.4 139 1-163 1-147 (573)
2 PLN02333 glucose-6-phosphate 1 99.8 1.2E-20 2.6E-25 176.6 11.0 64 100-163 113-176 (604)
3 PF00479 G6PD_N: Glucose-6-pho 99.8 2.5E-21 5.4E-26 156.7 4.9 56 108-163 1-56 (183)
4 PRK05722 glucose-6-phosphate 1 99.8 4.8E-19 1E-23 162.4 7.9 65 99-163 4-68 (495)
5 PRK12854 glucose-6-phosphate 1 99.8 5.9E-19 1.3E-23 161.7 7.8 62 102-163 9-70 (484)
6 TIGR00871 zwf glucose-6-phosph 99.8 6.2E-19 1.3E-23 161.2 7.5 61 103-163 1-61 (482)
7 PRK12853 glucose-6-phosphate 1 99.8 7E-19 1.5E-23 161.0 7.8 62 102-163 6-67 (482)
8 PLN02539 glucose-6-phosphate 1 99.8 9.3E-19 2E-23 160.6 7.8 65 99-163 12-77 (491)
9 COG0364 Zwf Glucose-6-phosphat 99.8 8.7E-19 1.9E-23 160.5 7.5 61 101-161 4-64 (483)
10 KOG0563 Glucose-6-phosphate 1- 99.7 6.8E-18 1.5E-22 154.5 7.0 65 100-164 13-77 (499)
11 PTZ00309 glucose-6-phosphate 1 99.7 1.5E-17 3.2E-22 154.3 8.0 60 103-162 53-114 (542)
12 PF13905 Thioredoxin_8: Thiore 85.5 3.8 8.3E-05 28.0 6.0 55 105-160 3-57 (95)
13 cd03011 TlpA_like_ScsD_MtbDsbE 80.5 5.3 0.00012 28.4 5.3 50 104-159 21-70 (123)
14 PLN00141 Tic62-NAD(P)-related 66.5 5.2 0.00011 32.3 2.6 36 103-147 16-51 (251)
15 PRK07326 short chain dehydroge 66.3 4.3 9.2E-05 31.7 1.9 44 105-157 7-50 (237)
16 PRK05653 fabG 3-ketoacyl-(acyl 66.0 6.5 0.00014 30.4 2.9 44 105-157 6-49 (246)
17 COG3311 AlpA Predicted transcr 64.7 11 0.00023 27.1 3.6 40 121-161 26-65 (70)
18 PRK07454 short chain dehydroge 62.4 6 0.00013 31.1 2.2 44 105-157 7-50 (241)
19 PRK12429 3-hydroxybutyrate deh 58.1 9.8 0.00021 29.9 2.7 44 105-157 5-48 (258)
20 PRK07523 gluconate 5-dehydroge 57.8 8.4 0.00018 30.7 2.3 45 105-158 11-55 (255)
21 PF02670 DXP_reductoisom: 1-de 56.3 33 0.00071 26.9 5.3 46 107-160 1-46 (129)
22 TIGR01764 excise DNA binding d 55.6 12 0.00025 22.4 2.2 33 123-158 16-48 (49)
23 PRK13394 3-hydroxybutyrate deh 54.6 12 0.00027 29.5 2.7 45 105-158 8-52 (262)
24 cd02966 TlpA_like_family TlpA- 53.9 61 0.0013 21.3 6.7 56 103-159 19-74 (116)
25 PRK07774 short chain dehydroge 51.5 14 0.0003 29.0 2.6 44 105-157 7-50 (250)
26 PRK12828 short chain dehydroge 50.7 21 0.00045 27.5 3.4 39 105-152 8-46 (239)
27 PRK07231 fabG 3-ketoacyl-(acyl 50.1 14 0.00031 28.8 2.4 44 105-157 6-49 (251)
28 PF13460 NAD_binding_10: NADH( 49.1 11 0.00023 28.5 1.5 18 107-125 1-18 (183)
29 cd03009 TryX_like_TryX_NRX Try 48.6 72 0.0016 23.1 5.8 53 104-157 19-72 (131)
30 cd02964 TryX_like_family Trypa 46.0 88 0.0019 22.9 6.0 56 103-159 17-73 (132)
31 PF05368 NmrA: NmrA-like famil 45.3 12 0.00027 29.6 1.4 20 107-127 1-20 (233)
32 PRK08703 short chain dehydroge 45.1 30 0.00066 27.2 3.6 44 105-157 7-50 (239)
33 cd02969 PRX_like1 Peroxiredoxi 44.0 98 0.0021 23.6 6.2 56 103-159 25-86 (171)
34 PRK06949 short chain dehydroge 43.9 19 0.00041 28.4 2.3 40 105-153 10-49 (258)
35 PRK07478 short chain dehydroge 43.3 20 0.00044 28.5 2.4 45 105-158 7-51 (254)
36 PRK08945 putative oxoacyl-(acy 43.0 18 0.0004 28.6 2.1 45 104-157 12-56 (247)
37 PRK05875 short chain dehydroge 42.7 20 0.00043 28.9 2.3 40 105-153 8-47 (276)
38 cd01078 NAD_bind_H4MPT_DH NADP 42.5 54 0.0012 25.7 4.7 45 104-157 28-72 (194)
39 PRK06124 gluconate 5-dehydroge 42.0 30 0.00064 27.5 3.1 43 104-155 11-53 (256)
40 cd03012 TlpA_like_DipZ_like Tl 40.3 87 0.0019 22.7 5.2 55 104-159 24-82 (126)
41 PRK05565 fabG 3-ketoacyl-(acyl 39.4 28 0.00061 27.0 2.5 42 106-156 7-49 (247)
42 PLN03209 translocon at the inn 39.1 24 0.00052 34.1 2.5 41 105-154 81-121 (576)
43 PRK09242 tropinone reductase; 38.2 26 0.00057 27.9 2.3 44 105-157 10-53 (257)
44 PRK06138 short chain dehydroge 38.0 27 0.00058 27.4 2.2 41 105-154 6-46 (252)
45 PRK07062 short chain dehydroge 37.5 87 0.0019 25.0 5.2 44 105-157 9-52 (265)
46 PRK06057 short chain dehydroge 37.3 61 0.0013 25.8 4.3 40 105-153 8-47 (255)
47 PRK07666 fabG 3-ketoacyl-(acyl 36.8 38 0.00082 26.6 2.9 42 105-155 8-49 (239)
48 cd03008 TryX_like_RdCVF Trypar 36.8 1.5E+02 0.0033 23.3 6.4 56 103-159 25-86 (146)
49 PRK07814 short chain dehydroge 36.5 32 0.00069 27.7 2.5 43 105-156 11-53 (263)
50 PRK07060 short chain dehydroge 36.5 26 0.00056 27.4 1.9 35 105-148 10-44 (245)
51 PRK12826 3-ketoacyl-(acyl-carr 36.0 36 0.00078 26.5 2.7 35 105-148 7-41 (251)
52 PLN02399 phospholipid hydroper 35.9 2.8E+02 0.006 23.6 8.6 53 104-157 100-158 (236)
53 cd02968 SCO SCO (an acronym fo 35.7 1.4E+02 0.0031 21.4 5.7 56 104-159 23-83 (142)
54 PRK06125 short chain dehydroge 35.4 31 0.00066 27.6 2.3 44 105-157 8-51 (259)
55 PRK06172 short chain dehydroge 35.0 34 0.00073 27.1 2.4 43 105-156 8-50 (253)
56 PRK08213 gluconate 5-dehydroge 34.9 32 0.0007 27.4 2.3 42 105-155 13-54 (259)
57 cd03010 TlpA_like_DsbE TlpA-li 34.4 1.7E+02 0.0037 20.8 6.5 50 104-158 26-75 (127)
58 PRK07035 short chain dehydroge 34.1 34 0.00074 27.0 2.3 44 105-157 9-52 (252)
59 PRK05993 short chain dehydroge 33.7 34 0.00074 27.9 2.3 33 106-147 6-38 (277)
60 PRK12939 short chain dehydroge 32.8 50 0.0011 25.7 3.1 43 105-156 8-50 (250)
61 PLN02986 cinnamyl-alcohol dehy 32.2 57 0.0012 27.1 3.4 39 105-152 6-44 (322)
62 PRK09186 flagellin modificatio 31.9 49 0.0011 26.0 2.9 43 106-157 6-48 (256)
63 PRK07775 short chain dehydroge 31.8 39 0.00084 27.6 2.3 41 105-154 11-51 (274)
64 PRK08085 gluconate 5-dehydroge 31.1 42 0.00092 26.6 2.4 40 105-153 10-49 (254)
65 PRK09072 short chain dehydroge 31.0 36 0.00078 27.3 2.0 40 106-154 7-46 (263)
66 PRK12829 short chain dehydroge 30.8 42 0.00091 26.5 2.3 43 104-155 11-53 (264)
67 PRK07904 short chain dehydroge 30.6 1.8E+02 0.0039 23.5 6.1 45 105-157 9-54 (253)
68 PRK08226 short chain dehydroge 29.2 74 0.0016 25.3 3.5 35 104-147 6-40 (263)
69 PRK05867 short chain dehydroge 28.6 48 0.001 26.4 2.3 44 105-157 10-53 (253)
70 PLN02896 cinnamyl-alcohol dehy 28.6 67 0.0015 27.3 3.3 41 100-149 6-46 (353)
71 PRK05866 short chain dehydroge 28.4 44 0.00096 27.9 2.2 42 105-155 41-82 (293)
72 TIGR00715 precor6x_red precorr 27.9 46 0.001 28.5 2.2 49 106-159 2-63 (256)
73 PRK05786 fabG 3-ketoacyl-(acyl 27.7 50 0.0011 25.7 2.3 40 105-153 6-45 (238)
74 PRK03147 thiol-disulfide oxido 27.5 2.4E+02 0.0053 21.0 5.9 54 103-158 61-114 (173)
75 PRK09135 pteridine reductase; 27.5 72 0.0016 24.7 3.1 35 105-148 7-41 (249)
76 cd00340 GSH_Peroxidase Glutath 27.5 2.7E+02 0.0058 20.9 6.4 54 104-159 23-82 (152)
77 PRK08628 short chain dehydroge 27.2 62 0.0013 25.7 2.7 34 106-148 9-42 (258)
78 PF05930 Phage_AlpA: Prophage 27.2 10 0.00023 24.4 -1.4 33 123-156 18-50 (51)
79 PRK08217 fabG 3-ketoacyl-(acyl 26.8 54 0.0012 25.5 2.3 43 105-156 6-48 (253)
80 PRK07890 short chain dehydroge 26.8 1.3E+02 0.0028 23.6 4.5 44 105-157 6-49 (258)
81 cd02967 mauD Methylamine utili 26.7 2.2E+02 0.0048 19.7 6.3 52 104-159 22-73 (114)
82 PRK08862 short chain dehydroge 26.3 67 0.0014 25.9 2.8 44 105-157 6-49 (227)
83 PF13241 NAD_binding_7: Putati 25.4 46 0.001 24.0 1.6 17 104-121 7-23 (103)
84 PRK08277 D-mannonate oxidoredu 24.9 64 0.0014 26.1 2.4 42 105-155 11-52 (278)
85 PRK08264 short chain dehydroge 24.0 52 0.0011 25.7 1.7 35 105-147 7-41 (238)
86 PRK08265 short chain dehydroge 23.8 86 0.0019 25.3 3.0 35 105-148 7-41 (261)
87 PRK08339 short chain dehydroge 23.6 71 0.0015 26.0 2.5 43 106-157 10-52 (263)
88 PRK07109 short chain dehydroge 23.2 81 0.0017 27.1 2.9 45 105-158 9-53 (334)
89 PRK07067 sorbitol dehydrogenas 23.2 63 0.0014 25.7 2.1 40 105-153 7-46 (257)
90 PRK07063 short chain dehydroge 22.8 94 0.002 24.7 3.0 45 105-158 8-52 (260)
91 PRK07097 gluconate 5-dehydroge 22.8 2E+02 0.0043 23.0 5.0 44 105-157 11-54 (265)
92 cd02970 PRX_like2 Peroxiredoxi 22.6 2.6E+02 0.0056 20.0 5.1 45 103-148 24-68 (149)
93 PRK12825 fabG 3-ketoacyl-(acyl 22.4 1E+02 0.0022 23.6 3.1 15 106-120 8-22 (249)
94 TIGR01832 kduD 2-deoxy-D-gluco 22.4 57 0.0012 25.6 1.7 34 105-147 6-39 (248)
95 PRK07825 short chain dehydroge 22.3 61 0.0013 26.1 1.8 34 105-147 6-39 (273)
96 PRK07201 short chain dehydroge 22.2 1.4E+02 0.0031 27.4 4.4 42 106-156 373-414 (657)
97 PLN02657 3,8-divinyl protochlo 22.2 70 0.0015 28.3 2.3 35 104-147 60-94 (390)
98 PRK06196 oxidoreductase; Provi 22.0 67 0.0014 26.9 2.1 40 105-153 27-66 (315)
99 PRK06500 short chain dehydroge 22.0 64 0.0014 25.2 1.9 34 105-147 7-40 (249)
100 PRK07831 short chain dehydroge 21.9 2.1E+02 0.0046 22.8 4.9 44 105-157 18-62 (262)
101 TIGR01500 sepiapter_red sepiap 21.8 1.9E+02 0.0041 23.1 4.6 47 106-157 2-48 (256)
102 PTZ00056 glutathione peroxidas 21.6 3.1E+02 0.0067 22.2 5.8 55 104-159 40-100 (199)
103 PRK05855 short chain dehydroge 21.2 1.7E+02 0.0037 25.9 4.6 45 104-157 315-359 (582)
104 PRK08589 short chain dehydroge 21.1 93 0.002 25.3 2.7 43 105-157 7-49 (272)
105 PLN02650 dihydroflavonol-4-red 20.9 1.3E+02 0.0028 25.5 3.6 37 106-151 7-43 (351)
106 PRK08063 enoyl-(acyl carrier p 20.9 2.1E+02 0.0045 22.4 4.6 15 105-119 5-19 (250)
107 PRK06935 2-deoxy-D-gluconate 3 20.7 1.2E+02 0.0026 24.1 3.2 34 104-146 15-48 (258)
108 cd06167 LabA_like LabA_like pr 20.4 2.6E+02 0.0055 20.7 4.8 45 104-158 100-144 (149)
109 PF11313 DUF3116: Protein of u 20.4 41 0.00089 25.0 0.4 29 106-134 29-57 (85)
110 PRK06198 short chain dehydroge 20.2 81 0.0018 24.9 2.1 35 105-148 7-42 (260)
111 cd03018 PRX_AhpE_like Peroxire 20.1 3.4E+02 0.0074 19.6 5.4 53 103-158 29-81 (149)
112 cd06270 PBP1_GalS_like Ligand 20.0 1.7E+02 0.0037 23.0 3.9 37 108-148 180-217 (268)
No 1
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=8.9e-34 Score=262.87 Aligned_cols=139 Identities=73% Similarity=1.034 Sum_probs=119.1
Q ss_pred CcccccccCCCccc--------cccccccccceecccccccccceeccccccccccceeeeecCCCCCcceeehhhhhhh
Q 031209 1 MATAHLSPCSSSLK--------HYKTQLFSDFIVVPRKSCFSTWVSHVQSRIHARKHFQLKSSNGHPLNAVSLQDTAILI 72 (164)
Q Consensus 1 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (164)
||+--.+||+|+++ +..-.+|+.-+..||++ +.|++.+|++|+|||||++++||+|+|+|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 72 (573)
T PLN02640 1 MATHFMSPCSSSSTNFLASSCFKETVPLFSRSITFPRKS---TFVSQIHSRIHARKHFQLKSSNGHPLNAVSLQD----- 72 (573)
T ss_pred CCccccCccccccchhHHHhhhhhcccchhccccccccc---hHHHHHHHHHhhhhheeeccCCCCcccceeccc-----
Confidence 67777799999996 34444555555568887 889999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCcchhccCcCCccccCCCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHH
Q 031209 73 LGLAGKPLANDHSKPQEIEASVPASSEKLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 152 (164)
Q Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~ee 152 (164)
|- +.+..|+.+ .+.++++|||||||||||+||||||||+|+++|+||++++|||+||+++++++
T Consensus 73 -~~--~~~~~~~~~-------------~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~~s~e~ 136 (573)
T PLN02640 73 -GE--NHLTEEHAE-------------KGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEE 136 (573)
T ss_pred -cc--ccccHhhcc-------------CCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHH
Confidence 72 334344433 34558999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 031209 153 LRNVISKMIVI 163 (164)
Q Consensus 153 fr~~vre~L~c 163 (164)
|++++++++++
T Consensus 137 fr~~v~~~l~~ 147 (573)
T PLN02640 137 LRDMISSTLTC 147 (573)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 2
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=99.84 E-value=1.2e-20 Score=176.56 Aligned_cols=64 Identities=77% Similarity=1.180 Sum_probs=61.0
Q ss_pred cCCCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhccc
Q 031209 100 KLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMIVI 163 (164)
Q Consensus 100 ~~~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L~c 163 (164)
....+++|||||||||||+||||||||+||++|+||++++|||+||+++++++|+++|++.++|
T Consensus 113 ~~~~~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs~~t~eefr~~v~~~l~~ 176 (604)
T PLN02333 113 KDESTVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARSKMTDAELRNMVSKTLTC 176 (604)
T ss_pred cCCCceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3556799999999999999999999999999999999999999999999999999999999987
No 3
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=99.83 E-value=2.5e-21 Score=156.73 Aligned_cols=56 Identities=46% Similarity=0.872 Sum_probs=51.8
Q ss_pred EEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhccc
Q 031209 108 TVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMIVI 163 (164)
Q Consensus 108 VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L~c 163 (164)
||||||||||+||||||||+|+++|+||++++|||++|+++++++|++++++++++
T Consensus 1 VifGatGDLA~RKL~PaL~~L~~~g~lp~~~~Iig~~R~~~~~~~f~~~v~~~l~~ 56 (183)
T PF00479_consen 1 VIFGATGDLAKRKLLPALYNLYRDGLLPEDFRIIGVARSDLSDEEFREKVREALKK 56 (183)
T ss_dssp EEETTTSHHHHHTHHHHHHHHHHTTSS-SSEEEEEEESS--SHHCCHHHHHHCCGG
T ss_pred CEeccccHHHHhHHHHHHHHHHHhCCCCCCcEEEEecCCcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999876
No 4
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=99.77 E-value=4.8e-19 Score=162.38 Aligned_cols=65 Identities=37% Similarity=0.737 Sum_probs=60.7
Q ss_pred ccCCCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhccc
Q 031209 99 EKLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMIVI 163 (164)
Q Consensus 99 ~~~~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L~c 163 (164)
+....+++|||||||||||+||||||||+|+++|.||++++|||++|+++++++|++++++++++
T Consensus 4 ~~~~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~~r~~v~~~l~~ 68 (495)
T PRK05722 4 PRTAEPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRDWSDEDFREVVREALKE 68 (495)
T ss_pred CCCCCCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999988764
No 5
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.77 E-value=5.9e-19 Score=161.70 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=58.9
Q ss_pred CCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhccc
Q 031209 102 GSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMIVI 163 (164)
Q Consensus 102 ~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L~c 163 (164)
..+++|||||||||||+||||||||+|+++|.||++++|||+||+++++++|+++|++++++
T Consensus 9 ~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~ 70 (484)
T PRK12854 9 APPTVFVLFGATGDLAKRKLLPGLFHLARAGLLPPDWRIVGTGRGDVSAEAFREHARDALDE 70 (484)
T ss_pred CCCeEEEEeCCchHHhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999998764
No 6
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=99.77 E-value=6.2e-19 Score=161.23 Aligned_cols=61 Identities=41% Similarity=0.756 Sum_probs=58.2
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhccc
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMIVI 163 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L~c 163 (164)
++++|||||||||||+||||||||+|+++|.||++++|||++|+++++++|+++|++++++
T Consensus 1 ~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~Iig~aR~~~s~e~f~~~v~~~l~~ 61 (482)
T TIGR00871 1 DPCILVIFGASGDLARKKLFPALYRLFRNGLLPPDFRIVGVARRDLSVEDFRKQVREAIIK 61 (482)
T ss_pred CCeEEEEECCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999999999999998864
No 7
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.77 E-value=7e-19 Score=161.01 Aligned_cols=62 Identities=32% Similarity=0.634 Sum_probs=59.0
Q ss_pred CCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhccc
Q 031209 102 GSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMIVI 163 (164)
Q Consensus 102 ~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L~c 163 (164)
.++++|||||||||||+||||||||+|+++|+||++++|||+||+++++++|+++++++|+.
T Consensus 6 ~~~~~~vIfGAtGDLA~RkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~ 67 (482)
T PRK12853 6 APPCTLVIFGATGDLARRKLLPALYRLARAGLLPEDLRIIGVGRDDWSDEQWRARVRESLRA 67 (482)
T ss_pred CCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999998863
No 8
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=99.76 E-value=9.3e-19 Score=160.61 Aligned_cols=65 Identities=55% Similarity=0.835 Sum_probs=60.8
Q ss_pred ccCCCCeEEEEEccchhhhhhhhHHHHHHhHHcCCC-CCCcEEEEEeCCCCChHHHHHHHHhhccc
Q 031209 99 EKLGSTLSITVVGASGDLAKKKIFPALFALYYEDCL-PEDFTVFGYARTKLTDEELRNVISKMIVI 163 (164)
Q Consensus 99 ~~~~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~L-P~~~~IIG~aR~~~s~eefr~~vre~L~c 163 (164)
+...++++|||||||||||+||||||||+||++|.| |++++|||++|+++++++|++++++++++
T Consensus 12 ~~~~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lpp~~~~IiG~aR~~~s~e~fr~~v~~~l~~ 77 (491)
T PLN02539 12 VVETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSKITDEELRDRIRGYLKD 77 (491)
T ss_pred cCCCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCcEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 455668999999999999999999999999999999 88999999999999999999999998864
No 9
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=8.7e-19 Score=160.55 Aligned_cols=61 Identities=44% Similarity=0.847 Sum_probs=58.5
Q ss_pred CCCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhc
Q 031209 101 LGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161 (164)
Q Consensus 101 ~~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L 161 (164)
...++++||||||||||+||||||||+|+++|.||++++|||+||++|+.|+|++.+++++
T Consensus 4 ~~~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i 64 (483)
T COG0364 4 TVEPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAI 64 (483)
T ss_pred ccCcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999999999999999999999887
No 10
>KOG0563 consensus Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=6.8e-18 Score=154.46 Aligned_cols=65 Identities=71% Similarity=1.008 Sum_probs=62.0
Q ss_pred cCCCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhcccC
Q 031209 100 KLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMIVIH 164 (164)
Q Consensus 100 ~~~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L~c~ 164 (164)
+...+.+|||||||||||+||+|||||+||++|.+|++|.|+|+||+.++.+++++.+.+.++|+
T Consensus 13 ~~~~~~~iiVfGASGDLAKKK~fPaLf~L~~~g~lp~~~~i~GYARSklt~ee~~~~~~~~l~~~ 77 (499)
T KOG0563|consen 13 QGESTLSIIVFGASGDLAKKKIFPALFALYREGLLPEDFKIFGYARSKLTDEELRKSISETLKCR 77 (499)
T ss_pred CCcceEEEEEEecCchhhhcchhHHHHHHHHhccCCCceEEEEEecccCChHHHHHHHhhhcCCC
Confidence 44568999999999999999999999999999999999999999999999999999999999996
No 11
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.71 E-value=1.5e-17 Score=154.28 Aligned_cols=60 Identities=48% Similarity=0.856 Sum_probs=55.0
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChH-HHHHH-HHhhcc
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDE-ELRNV-ISKMIV 162 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~e-efr~~-vre~L~ 162 (164)
.+++|||||||||||+||||||||+|+++|.||++++|||+||++++++ +|++. +++.++
T Consensus 53 ~~~~iVIFGATGDLA~RKL~PAL~~L~~~g~lp~~~~IiG~aR~~~~~e~~~~~~~l~~~~~ 114 (542)
T PTZ00309 53 RALTIIVLGASGDLAKKKTFPALFQLYCEGLLPSEVNIVGYARSKMSDVERWKKETLARFFK 114 (542)
T ss_pred CCeEEEEecCccHHhhhhHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcHHHHHHHHHHHHhh
Confidence 4799999999999999999999999999999999999999999999998 77776 666553
No 12
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=85.54 E-value=3.8 Score=28.02 Aligned_cols=55 Identities=22% Similarity=0.100 Sum_probs=43.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhh
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKM 160 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~ 160 (164)
..++.|.|++.=.-++.+|.|-.+++.-.-..++.||+++.. -+.+++.+.+.+.
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-EDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-SSHHHHHHHHHTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-CCHHHHHHHHHhc
Confidence 578999999999999999999999977432578999999995 5568888887664
No 13
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=80.54 E-value=5.3 Score=28.42 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=40.3
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHh
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 159 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre 159 (164)
...++.|.+++.=.-+...|.|..++.+ +.+++++..+.+.+++.+++++
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHH
Confidence 5689999999999999999999999865 6788888766567777776654
No 14
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=66.48 E-value=5.2 Score=32.30 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
..-.++|+||||.+++.-+ ..| ... +..|+++.|++
T Consensus 16 ~~~~ilItGasG~iG~~l~-~~L---~~~-----g~~V~~~~R~~ 51 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIV-EQL---LAK-----GFAVKAGVRDV 51 (251)
T ss_pred cCCeEEEECCCcHHHHHHH-HHH---HhC-----CCEEEEEecCH
Confidence 3568999999999987654 222 222 35677776654
No 15
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.25 E-value=4.3 Score=31.72 Aligned_cols=44 Identities=23% Similarity=0.117 Sum_probs=28.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||||.++....- .| ... +.+|++++|.+...+++.+.+
T Consensus 7 ~~ilItGatg~iG~~la~-~l---~~~-----g~~V~~~~r~~~~~~~~~~~l 50 (237)
T PRK07326 7 KVALITGGSKGIGFAIAE-AL---LAE-----GYKVAITARDQKELEEAAAEL 50 (237)
T ss_pred CEEEEECCCCcHHHHHHH-HH---HHC-----CCEEEEeeCCHHHHHHHHHHH
Confidence 578999999999876442 22 222 357888888764444444443
No 16
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=65.96 E-value=6.5 Score=30.41 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=28.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|-++.... . .|.+.| ..|++++|++...+.+.+.+
T Consensus 6 ~~ilItGasg~iG~~l~-~---~l~~~g-----~~v~~~~r~~~~~~~~~~~~ 49 (246)
T PRK05653 6 KTALVTGASRGIGRAIA-L---RLAADG-----AKVVIYDSNEEAAEALAAEL 49 (246)
T ss_pred CEEEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEeCChhHHHHHHHHH
Confidence 47999999999987643 2 233333 46888998865545444443
No 17
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=64.73 E-value=11 Score=27.10 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=30.9
Q ss_pred hHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhhc
Q 031209 121 IFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKMI 161 (164)
Q Consensus 121 L~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~L 161 (164)
-=|.+|.+..+|.+|+.++|=| ....|...|..+++....
T Consensus 26 SrstiYr~i~~~~FPkpvklG~-r~v~W~~SEI~~Wi~~~~ 65 (70)
T COG3311 26 SRSTIYRLIKDGTFPKPVKLGG-RSVAWPESEIDEWIASRK 65 (70)
T ss_pred cHHHHHHHHccCCCCCCeecCc-ccccccHHHHHHHHHHHH
Confidence 3489999999999998887654 556788888877776543
No 18
>PRK07454 short chain dehydrogenase; Provisional
Probab=62.45 E-value=6 Score=31.13 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=27.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.++..-. .. |.++ +.+|+.++|++...++..+.+
T Consensus 7 k~vlItG~sg~iG~~la-~~---l~~~-----G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 7 PRALITGASSGIGKATA-LA---FAKA-----GWDLALVARSQDALEALAAEL 50 (241)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHHC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 36899999999886533 22 2233 357888888765445554444
No 19
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.05 E-value=9.8 Score=29.90 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=28.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||||.++..-. ..| ..+ +.+|++++|++...+++...+
T Consensus 5 ~~vlItG~sg~iG~~la-~~l---~~~-----g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 5 KVALVTGAASGIGLEIA-LAL---AKE-----GAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CEEEEECCCchHHHHHH-HHH---HHC-----CCeEEEEeCCHHHHHHHHHHH
Confidence 37899999999986322 222 222 468888999876555555444
No 20
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=57.75 E-value=8.4 Score=30.67 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=28.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
-.++|.||+|.++..-. ..|..+| .+|+.++|++...++..+.++
T Consensus 11 k~vlItGa~g~iG~~ia----~~l~~~G-----~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 11 RRALVTGSSQGIGYALA----EGLAQAG-----AEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CEEEEECCcchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 47999999999987543 2233333 578888887544444444443
No 21
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=56.27 E-value=33 Score=26.94 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=32.1
Q ss_pred EEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHhh
Q 031209 107 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKM 160 (164)
Q Consensus 107 ~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre~ 160 (164)
++|+|+||=....-| ...++ .|++|+|+|.+= .-..+.+.+++++.
T Consensus 1 i~ILGsTGSIG~qtL-----dVi~~--~~d~f~v~~Lsa-~~n~~~L~~q~~~f 46 (129)
T PF02670_consen 1 IAILGSTGSIGTQTL-----DVIRK--HPDKFEVVALSA-GSNIEKLAEQAREF 46 (129)
T ss_dssp EEEESTTSHHHHHHH-----HHHHH--CTTTEEEEEEEE-SSTHHHHHHHHHHH
T ss_pred CEEEcCCcHHHHHHH-----HHHHh--CCCceEEEEEEc-CCCHHHHHHHHHHh
Confidence 689999999887644 22233 378999999876 33457777776653
No 22
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=55.55 E-value=12 Score=22.43 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=25.3
Q ss_pred HHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 123 PALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 123 PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
..+++|.++|.+|. .++ | .+.-++.+++.+++.
T Consensus 16 ~ti~~~~~~g~i~~-~~~-g-~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 16 DTVYRLIHEGELPA-YRV-G-RHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHHHcCCCCe-EEe-C-CeEEEeHHHHHHHHh
Confidence 57899999999984 444 6 566788899888865
No 23
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=54.59 E-value=12 Score=29.48 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=30.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
-.++|.||+|-++.... .. |.+.| ..|+.++|.+...++..+.+.
T Consensus 8 ~~vlItGasg~iG~~la-~~---l~~~G-----~~v~~~~r~~~~~~~~~~~~~ 52 (262)
T PRK13394 8 KTAVVTGAASGIGKEIA-LE---LARAG-----AAVAIADLNQDGANAVADEIN 52 (262)
T ss_pred CEEEEECCCChHHHHHH-HH---HHHCC-----CeEEEEeCChHHHHHHHHHHH
Confidence 47899999999997633 22 23344 468888887765566665553
No 24
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=53.95 E-value=61 Score=21.34 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=40.9
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHh
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 159 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre 159 (164)
....++.|.++.=-.-++..|.|..+..+-. ..++.|+++...+.+.+++.+++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHH
Confidence 3467788887765566778899999987633 2469999998876557777777654
No 25
>PRK07774 short chain dehydrogenase; Provisional
Probab=51.46 E-value=14 Score=29.04 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=28.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.++.... ..|...| .+|+.++|.+...+++.+.+
T Consensus 7 k~vlItGasg~iG~~la----~~l~~~g-----~~vi~~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYA----EALAREG-----ASVVVADINAEGAERVAKQI 50 (250)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 36899999999986543 2233333 57888888765445555544
No 26
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.74 E-value=21 Score=27.50 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=25.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 152 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~ee 152 (164)
-+++|.||||-++..-. -.|.++ +.+|++++|+....++
T Consensus 8 k~vlItGatg~iG~~la----~~l~~~-----G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATA----AWLAAR-----GARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHH----HHHHHC-----CCeEEEEeCChHhHHH
Confidence 47999999998885432 222233 4578888886644333
No 27
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.05 E-value=14 Score=28.81 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=28.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-+++|.||+|-++..-. ..|.+. +.+|++++|++...++..+.+
T Consensus 6 ~~vlItGasg~iG~~l~----~~l~~~-----G~~V~~~~r~~~~~~~~~~~~ 49 (251)
T PRK07231 6 KVAIVTGASSGIGEGIA----RRFAAE-----GARVVVTDRNEEAAERVAAEI 49 (251)
T ss_pred cEEEEECCCChHHHHHH----HHHHHC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 47999999999986432 122233 357899999875445444443
No 28
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=49.12 E-value=11 Score=28.48 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=14.1
Q ss_pred EEEEccchhhhhhhhHHHH
Q 031209 107 ITVVGASGDLAKKKIFPAL 125 (164)
Q Consensus 107 ~VIFGATGDLAkRKL~PAL 125 (164)
++||||||-++++.+ ..|
T Consensus 1 I~V~GatG~vG~~l~-~~L 18 (183)
T PF13460_consen 1 ILVFGATGFVGRALA-KQL 18 (183)
T ss_dssp EEEETTTSHHHHHHH-HHH
T ss_pred eEEECCCChHHHHHH-HHH
Confidence 689999999998754 444
No 29
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=48.58 E-value=72 Score=23.05 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=39.3
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCC-CCCCcEEEEEeCCCCChHHHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDC-LPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~-LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
...+|-|.|+.--.-++..|.|-+++.+-. ...++.|++++... +.+++.+.+
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-~~~~~~~~~ 72 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-DEESFNDYF 72 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-CHHHHHHHH
Confidence 468999999998889999999988876532 12368999998643 456666554
No 30
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=45.98 E-value=88 Score=22.88 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=40.4
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCC-CCCcEEEEEeCCCCChHHHHHHHHh
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCL-PEDFTVFGYARTKLTDEELRNVISK 159 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~L-P~~~~IIG~aR~~~s~eefr~~vre 159 (164)
....+|-|.||.--.-+..+|.|-.++.+-.- ..++.|++++..+ +.+++.+++.+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~ 73 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-SEESFNEYFSE 73 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-CHHHHHHHHhc
Confidence 35789999999888899999999888764211 1368999998654 34566555543
No 31
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=45.34 E-value=12 Score=29.61 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=14.8
Q ss_pred EEEEccchhhhhhhhHHHHHH
Q 031209 107 ITVVGASGDLAKKKIFPALFA 127 (164)
Q Consensus 107 ~VIFGATGDLAkRKL~PALy~ 127 (164)
|.|+||||.+++. ++.+|-.
T Consensus 1 I~V~GatG~~G~~-v~~~L~~ 20 (233)
T PF05368_consen 1 ILVTGATGNQGRS-VVRALLS 20 (233)
T ss_dssp EEEETTTSHHHHH-HHHHHHH
T ss_pred CEEECCccHHHHH-HHHHHHh
Confidence 6899999999954 4455544
No 32
>PRK08703 short chain dehydrogenase; Provisional
Probab=45.10 E-value=30 Score=27.17 Aligned_cols=44 Identities=30% Similarity=0.233 Sum_probs=28.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|=|++.-. ..| .+. +.+|+.++|++...++..+.+
T Consensus 7 k~vlItG~sggiG~~la-~~l---~~~-----g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVA-KAY---AAA-----GATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHH-HHH---HHc-----CCEEEEEeCChHHHHHHHHHH
Confidence 47899999998887632 222 222 467888999875555554444
No 33
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=44.00 E-value=98 Score=23.61 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=41.9
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCC------ChHHHHHHHHh
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL------TDEELRNVISK 159 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~------s~eefr~~vre 159 (164)
....++.|.+++=-.-+..+|+|-.|+.+-. ..++.|||+...+. +.+++++++.+
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~-~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~ 86 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYG-AKGVAVVAINSNDIEAYPEDSPENMKAKAKE 86 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHh-hCCeEEEEEecCccccccccCHHHHHHHHHH
Confidence 3568888889988888888999999986532 24799999987653 55777776653
No 34
>PRK06949 short chain dehydrogenase; Provisional
Probab=43.93 E-value=19 Score=28.42 Aligned_cols=40 Identities=25% Similarity=0.091 Sum_probs=25.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 153 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eef 153 (164)
-.++|.||+|.++..-.- .|.++| .+|++++|+.-..++.
T Consensus 10 k~ilItGasg~IG~~~a~----~l~~~G-----~~Vi~~~r~~~~~~~~ 49 (258)
T PRK06949 10 KVALVTGASSGLGARFAQ----VLAQAG-----AKVVLASRRVERLKEL 49 (258)
T ss_pred CEEEEECCCcHHHHHHHH----HHHHCC-----CEEEEEeCCHHHHHHH
Confidence 579999999999875442 222333 5788888865333333
No 35
>PRK07478 short chain dehydrogenase; Provisional
Probab=43.31 E-value=20 Score=28.46 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=29.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
-.++|.||+|.++..-. ..|.+.| .+|+.++|++...++..+.++
T Consensus 7 k~~lItGas~giG~~ia----~~l~~~G-----~~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 7 KVAIITGASSGIGRAAA----KLFAREG-----AKVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred CEEEEeCCCChHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 36899999999887532 1233344 578888887655555555443
No 36
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=42.96 E-value=18 Score=28.56 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=28.1
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
.-+++|.||+|-++....- .|.+.| .+|++++|+....+++.+.+
T Consensus 12 ~k~vlItG~~g~iG~~la~----~l~~~G-----~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 12 DRIILVTGAGDGIGREAAL----TYARHG-----ATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred CCEEEEeCCCchHHHHHHH----HHHHCC-----CcEEEEeCCHHHHHHHHHHH
Confidence 3479999999998875542 222333 47777888764444444443
No 37
>PRK05875 short chain dehydrogenase; Provisional
Probab=42.71 E-value=20 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=25.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 153 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eef 153 (164)
-.++|+||+|.++.... ..|.++| .+|++++|+.-..++.
T Consensus 8 k~vlItGasg~IG~~la----~~l~~~G-----~~V~~~~r~~~~~~~~ 47 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVA----AGLVAAG-----AAVMIVGRNPDKLAAA 47 (276)
T ss_pred CEEEEECCCcHHHHHHH----HHHHHCC-----CeEEEEeCCHHHHHHH
Confidence 37899999999986432 1223333 5788888865333333
No 38
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=42.52 E-value=54 Score=25.73 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=27.1
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
...++|+||||..++... ..|.+.| .+|+.++|+.-..+++.+.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a----~~l~~~g-----~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAA----VLLAREG-----ARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred CCEEEEECCCCHHHHHHH----HHHHHCC-----CEEEEEcCCHHHHHHHHHHH
Confidence 357999999999996443 2333333 35666678653334444433
No 39
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=42.00 E-value=30 Score=27.46 Aligned_cols=43 Identities=21% Similarity=0.043 Sum_probs=27.2
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 155 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~ 155 (164)
.-.++|.||+|.+++... .. |.+.| .+|+.++|++-..++..+
T Consensus 11 ~k~ilItGas~~IG~~la-~~---l~~~G-----~~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 11 GQVALVTGSARGLGFEIA-RA---LAGAG-----AHVLVNGRNAATLEAAVA 53 (256)
T ss_pred CCEEEEECCCchHHHHHH-HH---HHHcC-----CeEEEEeCCHHHHHHHHH
Confidence 457999999999987543 22 22333 578888887533334333
No 40
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=40.27 E-value=87 Score=22.66 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=38.0
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC----CChHHHHHHHHh
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK----LTDEELRNVISK 159 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~----~s~eefr~~vre 159 (164)
...++.|=++.=-.-+.-+|.|-.|+++-. ..++.||++...+ .+.++.++++.+
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~-~~~~~vi~i~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYK-DDGLVVIGVHSPEFAFERDLANVKSAVLR 82 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcC-cCCeEEEEeccCccccccCHHHHHHHHHH
Confidence 456677767776666778999999998743 3579999998743 334555555443
No 41
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.37 E-value=28 Score=27.03 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEE-eCCCCChHHHHHH
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGY-ARTKLTDEELRNV 156 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~-aR~~~s~eefr~~ 156 (164)
.++|.||||.++.... ..| .+.| .+++.+ +|++...++..+.
T Consensus 7 ~ilI~Gasg~iG~~la-~~l---~~~g-----~~v~~~~~r~~~~~~~~~~~ 49 (247)
T PRK05565 7 VAIVTGASGGIGRAIA-ELL---AKEG-----AKVVIAYDINEEAAQELLEE 49 (247)
T ss_pred EEEEeCCCcHHHHHHH-HHH---HHCC-----CEEEEEcCCCHHHHHHHHHH
Confidence 6899999999997644 222 2333 466666 7765444444443
No 42
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=39.10 E-value=24 Score=34.14 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=27.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 154 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr 154 (164)
-.++|+||+|-++++.. - .|.+.| .+|+++.|+.-..+++.
T Consensus 81 KvVLVTGATGgIG~aLA-r---~LLk~G-----~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTV-R---ELLKLG-----FRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHH-H---HHHHCC-----CeEEEEeCCHHHHHHHH
Confidence 36899999999987755 2 233333 67888888764444443
No 43
>PRK09242 tropinone reductase; Provisional
Probab=38.18 E-value=26 Score=27.87 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=26.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.+++... ..|.++| .+|+.++|+....++..+.+
T Consensus 10 k~~lItGa~~gIG~~~a----~~l~~~G-----~~v~~~~r~~~~~~~~~~~l 53 (257)
T PRK09242 10 QTALITGASKGIGLAIA----REFLGLG-----ADVLIVARDADALAQARDEL 53 (257)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHHH
Confidence 36899999999886433 1233334 46777777654444444433
No 44
>PRK06138 short chain dehydrogenase; Provisional
Probab=37.96 E-value=27 Score=27.41 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=25.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 154 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr 154 (164)
-+++|.||+|-++.... .. |.+.| .+|+.++|+....++..
T Consensus 6 k~~lItG~sg~iG~~la-~~---l~~~G-----~~v~~~~r~~~~~~~~~ 46 (252)
T PRK06138 6 RVAIVTGAGSGIGRATA-KL---FAREG-----ARVVVADRDAEAAERVA 46 (252)
T ss_pred cEEEEeCCCchHHHHHH-HH---HHHCC-----CeEEEecCCHHHHHHHH
Confidence 37899999999987533 11 22333 56788888754333333
No 45
>PRK07062 short chain dehydrogenase; Provisional
Probab=37.55 E-value=87 Score=24.98 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=27.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.+++. +.-.| .+. +.+|+.++|++...++..+.+
T Consensus 9 k~~lItGas~giG~~-ia~~l---~~~-----G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 9 RVAVVTGGSSGIGLA-TVELL---LEA-----GASVAICGRDEERLASAEARL 52 (265)
T ss_pred CEEEEeCCCchHHHH-HHHHH---HHC-----CCeEEEEeCCHHHHHHHHHHH
Confidence 378999999999874 32333 223 457888888764444444433
No 46
>PRK06057 short chain dehydrogenase; Provisional
Probab=37.34 E-value=61 Score=25.80 Aligned_cols=40 Identities=13% Similarity=-0.017 Sum_probs=25.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 153 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eef 153 (164)
-.++|.||+|-|+.... ..|.+.| .+|+.++|++...++.
T Consensus 8 ~~vlItGasggIG~~~a----~~l~~~G-----~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 8 RVAVITGGGSGIGLATA----RRLAAEG-----ATVVVGDIDPEAGKAA 47 (255)
T ss_pred CEEEEECCCchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHH
Confidence 47899999999987544 2233333 5778888865433333
No 47
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.79 E-value=38 Score=26.56 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=26.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 155 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~ 155 (164)
-.++|.||+|-|+.... .. |... +..|+.++|++...++..+
T Consensus 8 ~~vlVtG~sg~iG~~l~-~~---L~~~-----G~~Vi~~~r~~~~~~~~~~ 49 (239)
T PRK07666 8 KNALITGAGRGIGRAVA-IA---LAKE-----GVNVGLLARTEENLKAVAE 49 (239)
T ss_pred CEEEEEcCCchHHHHHH-HH---HHHC-----CCEEEEEeCCHHHHHHHHH
Confidence 46899999998886543 11 2223 3578888887644444433
No 48
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=36.76 E-value=1.5e+02 Score=23.30 Aligned_cols=56 Identities=7% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHc---CC---CCCCcEEEEEeCCCCChHHHHHHHHh
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYE---DC---LPEDFTVFGYARTKLTDEELRNVISK 159 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~---g~---LP~~~~IIG~aR~~~s~eefr~~vre 159 (164)
....+|-|.||-==.-|+.+|.|-.+|.+ .. -.+++.||+++..+ +.+++.+++.+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-~~~~~~~f~~~ 86 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-SEQQQESFLKD 86 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-CHHHHHHHHHH
Confidence 35789999999888899999999988753 11 23469999999643 45656666543
No 49
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.46 E-value=32 Score=27.70 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=26.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 156 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~ 156 (164)
-.++|.||+|-++.... -.|... +.+|++++|++...+++.+.
T Consensus 11 ~~vlItGasggIG~~~a----~~l~~~-----G~~Vi~~~r~~~~~~~~~~~ 53 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIA----LAFAEA-----GADVLIAARTESQLDEVAEQ 53 (263)
T ss_pred CEEEEECCCChHHHHHH----HHHHHC-----CCEEEEEeCCHHHHHHHHHH
Confidence 36899999999887633 112222 35778888865433444333
No 50
>PRK07060 short chain dehydrogenase; Provisional
Probab=36.45 E-value=26 Score=27.37 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=24.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 148 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~ 148 (164)
-.++|+||+|.++..-. . .|.++| ..|+.++|+.-
T Consensus 10 ~~~lItGa~g~iG~~~a-~---~l~~~g-----~~V~~~~r~~~ 44 (245)
T PRK07060 10 KSVLVTGASSGIGRACA-V---ALAQRG-----ARVVAAARNAA 44 (245)
T ss_pred CEEEEeCCcchHHHHHH-H---HHHHCC-----CEEEEEeCCHH
Confidence 47899999999987653 2 233344 46888888653
No 51
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=35.95 E-value=36 Score=26.48 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=23.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 148 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~ 148 (164)
-+++|.||+|=++.... . .|.+.| ..|++++|+.-
T Consensus 7 ~~ilItGasg~iG~~l~-~---~l~~~g-----~~V~~~~r~~~ 41 (251)
T PRK12826 7 RVALVTGAARGIGRAIA-V---RLAADG-----AEVIVVDICGD 41 (251)
T ss_pred CEEEEcCCCCcHHHHHH-H---HHHHCC-----CEEEEEeCCHH
Confidence 36899999999876533 2 223333 57888888753
No 52
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=35.90 E-value=2.8e+02 Score=23.65 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=39.8
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC------CChHHHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK------LTDEELRNVI 157 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~------~s~eefr~~v 157 (164)
...+|.|-|+.-=.-+..+|.|-.|+.+-. .+++.|||+...+ -+.++..+.+
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~-~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~ 158 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKQFA 158 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHHHHHh-cCCcEEEEEecccccccCCCCHHHHHHHH
Confidence 467777889998888999999999997642 4579999999643 2445666655
No 53
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=35.74 E-value=1.4e+02 Score=21.43 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=39.2
Q ss_pred CeEEEEEccchhhh-hhhhHHHHHHhHHcCCCC--CCcEEEEEeCCCC--ChHHHHHHHHh
Q 031209 104 TLSITVVGASGDLA-KKKIFPALFALYYEDCLP--EDFTVFGYARTKL--TDEELRNVISK 159 (164)
Q Consensus 104 ~~s~VIFGATGDLA-kRKL~PALy~L~~~g~LP--~~~~IIG~aR~~~--s~eefr~~vre 159 (164)
...+|+|.+++.-. -+..+|.|-.++.+=.-. +++.|++++-.+. +.+++.+++.+
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~ 83 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKA 83 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999875 888899999987643211 3599999987553 33555555443
No 54
>PRK06125 short chain dehydrogenase; Provisional
Probab=35.42 E-value=31 Score=27.60 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=27.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.|++--. ..| ... +.+|+.++|+....++..+.+
T Consensus 8 k~vlItG~~~giG~~ia-~~l---~~~-----G~~V~~~~r~~~~~~~~~~~l 51 (259)
T PRK06125 8 KRVLITGASKGIGAAAA-EAF---AAE-----GCHLHLVARDADALEALAADL 51 (259)
T ss_pred CEEEEeCCCchHHHHHH-HHH---HHc-----CCEEEEEeCCHHHHHHHHHHH
Confidence 47999999999986432 222 223 357888888765444444443
No 55
>PRK06172 short chain dehydrogenase; Provisional
Probab=34.97 E-value=34 Score=27.09 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=27.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 156 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~ 156 (164)
-.++|.||+|.++..-. ..|.++| .+|+.++|++...++..+.
T Consensus 8 k~ilItGas~~iG~~ia----~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 50 (253)
T PRK06172 8 KVALVTGGAAGIGRATA----LAFAREG-----AKVVVADRDAAGGEETVAL 50 (253)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 47899999999987633 2233344 4788888876444444433
No 56
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=34.88 E-value=32 Score=27.38 Aligned_cols=42 Identities=26% Similarity=0.036 Sum_probs=25.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 155 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~ 155 (164)
-.++|.||+|.++..- . ..|.+.| .+|+.++|+.-..++..+
T Consensus 13 k~ilItGa~g~IG~~l-a---~~l~~~G-----~~V~~~~r~~~~~~~~~~ 54 (259)
T PRK08213 13 KTALVTGGSRGLGLQI-A---EALGEAG-----ARVVLSARKAEELEEAAA 54 (259)
T ss_pred CEEEEECCCchHHHHH-H---HHHHHcC-----CEEEEEeCCHHHHHHHHH
Confidence 4699999999998542 1 2222333 467888886533333333
No 57
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=34.44 E-value=1.7e+02 Score=20.84 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=37.9
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
...+|.|-|+.--.-+...|.|-.|.+++ ++.||+++-. -+.++.++++.
T Consensus 26 k~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~-~~~~~~~~~~~ 75 (127)
T cd03010 26 KPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYK-DNPENALAWLA 75 (127)
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECC-CCHHHHHHHHH
Confidence 45677777999998999999999998775 4999999854 34466665543
No 58
>PRK07035 short chain dehydrogenase; Provisional
Probab=34.11 E-value=34 Score=27.02 Aligned_cols=44 Identities=18% Similarity=0.060 Sum_probs=27.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.++..-.- .|.+.| .+|+.++|+.-..++..+.+
T Consensus 9 k~vlItGas~gIG~~l~~----~l~~~G-----~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 9 KIALVTGASRGIGEAIAK----LLAQQG-----AHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred CEEEEECCCcHHHHHHHH----HHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 368999999999864331 223333 57888888654444444443
No 59
>PRK05993 short chain dehydrogenase; Provisional
Probab=33.74 E-value=34 Score=27.91 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=22.2
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
.++|.||+|-+++... -.|.+. +.+|++++|+.
T Consensus 6 ~vlItGasggiG~~la----~~l~~~-----G~~Vi~~~r~~ 38 (277)
T PRK05993 6 SILITGCSSGIGAYCA----RALQSD-----GWRVFATCRKE 38 (277)
T ss_pred EEEEeCCCcHHHHHHH----HHHHHC-----CCEEEEEECCH
Confidence 6899999999986532 122233 46788888864
No 60
>PRK12939 short chain dehydrogenase; Provisional
Probab=32.81 E-value=50 Score=25.72 Aligned_cols=43 Identities=23% Similarity=0.024 Sum_probs=26.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 156 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~ 156 (164)
-.++|.||+|-++.... -.|.+.| .+|+.++|++...++..+.
T Consensus 8 ~~vlItGa~g~iG~~la----~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 50 (250)
T PRK12939 8 KRALVTGAARGLGAAFA----EALAEAG-----ATVAFNDGLAAEARELAAA 50 (250)
T ss_pred CEEEEeCCCChHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 46899999999887543 1223333 5688888875433444333
No 61
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=32.17 E-value=57 Score=27.10 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=26.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 152 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~ee 152 (164)
-.++|.||||-++..-+ . .|...| .+|+++.|+....+.
T Consensus 6 ~~vlVTGatG~iG~~l~-~---~L~~~g-----~~V~~~~r~~~~~~~ 44 (322)
T PLN02986 6 KLVCVTGASGYIASWIV-K---LLLLRG-----YTVKATVRDLTDRKK 44 (322)
T ss_pred CEEEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEECCCcchHH
Confidence 37999999999997644 2 233344 578888886654433
No 62
>PRK09186 flagellin modification protein A; Provisional
Probab=31.88 E-value=49 Score=26.04 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=26.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
.++|.||+|-+++.- ...| .++ +.+|++++|+....++..+.+
T Consensus 6 ~vlItGas~giG~~~-a~~l---~~~-----g~~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 6 TILITGAGGLIGSAL-VKAI---LEA-----GGIVIAADIDKEALNELLESL 48 (256)
T ss_pred EEEEECCCchHHHHH-HHHH---HHC-----CCEEEEEecChHHHHHHHHHH
Confidence 689999999887643 2222 233 356777887765545544444
No 63
>PRK07775 short chain dehydrogenase; Provisional
Probab=31.75 E-value=39 Score=27.55 Aligned_cols=41 Identities=29% Similarity=0.135 Sum_probs=25.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 154 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr 154 (164)
-.++|.||+|.++.. +...| ..+| .+|+.++|+....+++.
T Consensus 11 ~~vlVtGa~g~iG~~-la~~L---~~~G-----~~V~~~~r~~~~~~~~~ 51 (274)
T PRK07775 11 RPALVAGASSGIGAA-TAIEL---AAAG-----FPVALGARRVEKCEELV 51 (274)
T ss_pred CEEEEECCCchHHHH-HHHHH---HHCC-----CEEEEEeCCHHHHHHHH
Confidence 378999999999865 33333 3333 56777777653333333
No 64
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=31.14 E-value=42 Score=26.61 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=24.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 153 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eef 153 (164)
-.++|.||+|.++..-. ..|.++| .+++.++|++...++.
T Consensus 10 k~~lItGas~giG~~ia----~~L~~~G-----~~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 10 KNILITGSAQGIGFLLA----TGLAEYG-----AEIIINDITAERAELA 49 (254)
T ss_pred CEEEEECCCChHHHHHH----HHHHHcC-----CEEEEEcCCHHHHHHH
Confidence 36899999999986533 2233344 4666677764333333
No 65
>PRK09072 short chain dehydrogenase; Provisional
Probab=30.95 E-value=36 Score=27.26 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=24.2
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHH
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 154 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr 154 (164)
.++|.||+|-|+..-. ..| .+. +..|++++|++-..+++.
T Consensus 7 ~vlItG~s~~iG~~ia-~~l---~~~-----G~~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 7 RVLLTGASGGIGQALA-EAL---AAA-----GARLLLVGRNAEKLEALA 46 (263)
T ss_pred EEEEECCCchHHHHHH-HHH---HHC-----CCEEEEEECCHHHHHHHH
Confidence 6899999999885432 222 223 357788888654333433
No 66
>PRK12829 short chain dehydrogenase; Provisional
Probab=30.80 E-value=42 Score=26.48 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=26.5
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 155 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~ 155 (164)
.-.++|.||+|-++..-. -.|...| ..|++++|.....+++.+
T Consensus 11 ~~~vlItGa~g~iG~~~a----~~L~~~g-----~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIA----EAFAEAG-----ARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCEEEEeCCCCcHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHH
Confidence 357999999999985432 2223333 568888886544444433
No 67
>PRK07904 short chain dehydrogenase; Provisional
Probab=30.59 E-value=1.8e+02 Score=23.51 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=28.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCC-hHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLT-DEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s-~eefr~~v 157 (164)
-.++|.||+|-+++... ..|.+.| +.+|+.++|++-. .++..+.+
T Consensus 9 ~~vlItGas~giG~~la----~~l~~~g----g~~V~~~~r~~~~~~~~~~~~l 54 (253)
T PRK07904 9 QTILLLGGTSEIGLAIC----ERYLKNA----PARVVLAALPDDPRRDAAVAQM 54 (253)
T ss_pred cEEEEEcCCcHHHHHHH----HHHHhcC----CCeEEEEeCCcchhHHHHHHHH
Confidence 36899999999887532 2233333 3677888887654 44444444
No 68
>PRK08226 short chain dehydrogenase; Provisional
Probab=29.15 E-value=74 Score=25.28 Aligned_cols=35 Identities=6% Similarity=-0.014 Sum_probs=23.5
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
.-.++|.||+|-+++... ..| .+.| .+|+.++|+.
T Consensus 6 ~~~~lItG~s~giG~~la-~~l---~~~G-----~~Vv~~~r~~ 40 (263)
T PRK08226 6 GKTALITGALQGIGEGIA-RVF---ARHG-----ANLILLDISP 40 (263)
T ss_pred CCEEEEeCCCChHHHHHH-HHH---HHCC-----CEEEEecCCH
Confidence 357899999999987632 232 3333 4677788764
No 69
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.64 E-value=48 Score=26.36 Aligned_cols=44 Identities=25% Similarity=0.140 Sum_probs=26.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.++..-. ..|.+.| .+|+.++|+.-..++..+.+
T Consensus 10 k~vlVtGas~gIG~~ia----~~l~~~G-----~~V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 10 KRALITGASTGIGKRVA----LAYVEAG-----AQVAIAARHLDALEKLADEI 53 (253)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEcCCHHHHHHHHHHH
Confidence 36899999998876533 2333344 46777777654334444443
No 70
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=28.61 E-value=67 Score=27.26 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=26.7
Q ss_pred cCCCCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCC
Q 031209 100 KLGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLT 149 (164)
Q Consensus 100 ~~~~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s 149 (164)
+.+....++|.||+|=++.... ..| ... +..|+++.|....
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~-~~L---~~~-----G~~V~~~~r~~~~ 46 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLV-KLL---LQR-----GYTVHATLRDPAK 46 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHH-HHH---HHC-----CCEEEEEeCChHH
Confidence 4455568999999998887543 322 333 3578888776543
No 71
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.42 E-value=44 Score=27.92 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=25.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 155 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~ 155 (164)
-.++|.||+|-+++.-.- . |.+. +..|+.++|+.-..++..+
T Consensus 41 k~vlItGasggIG~~la~-~---La~~-----G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAE-Q---FARR-----GATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHH-H---HHHC-----CCEEEEEECCHHHHHHHHH
Confidence 468999999999865331 1 2233 3578888887533344333
No 72
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.94 E-value=46 Score=28.55 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=29.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHhH-----------HcCCCCCC--cEEEEEeCCCCChHHHHHHHHh
Q 031209 106 SITVVGASGDLAKKKIFPALFALY-----------YEDCLPED--FTVFGYARTKLTDEELRNVISK 159 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~-----------~~g~LP~~--~~IIG~aR~~~s~eefr~~vre 159 (164)
.|.|+||||| -|+|...|-..- ....+++. ..++ .+ .++.+++.+.+++
T Consensus 2 ~ILvlGGT~e--gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~-~g--~l~~~~l~~~l~~ 63 (256)
T TIGR00715 2 TVLLMGGTVD--SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVH-TG--ALDPQELREFLKR 63 (256)
T ss_pred eEEEEechHH--HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEE-EC--CCCHHHHHHHHHh
Confidence 5899999999 777777775331 11223221 2333 22 4677888787765
No 73
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.74 E-value=50 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=25.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 153 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eef 153 (164)
-.++|.||+|-++..-. . .|.++ +..|++++|++...++.
T Consensus 6 ~~vlItGa~g~iG~~~a-~---~l~~~-----G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVA-Y---FALKE-----GAQVCINSRNENKLKRM 45 (238)
T ss_pred cEEEEECCCchHHHHHH-H---HHHHC-----CCEEEEEeCCHHHHHHH
Confidence 37899999999886433 2 22233 35888899876444433
No 74
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=27.55 E-value=2.4e+02 Score=21.02 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=40.1
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
....+|.|-++..-.-+...|.|..++++-. ..++.++++...+ +.++++++++
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~-~~~~~vi~i~~d~-~~~~~~~~~~ 114 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYK-EKGVEIIAVNVDE-TELAVKNFVN 114 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhh-cCCeEEEEEEcCC-CHHHHHHHHH
Confidence 3457888889999999999999999996421 2358999998754 4466666654
No 75
>PRK09135 pteridine reductase; Provisional
Probab=27.53 E-value=72 Score=24.73 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=23.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 148 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~ 148 (164)
-.++|.||+|-|++... - .|.+. +.+|++++|+..
T Consensus 7 ~~vlItGa~g~iG~~l~-~---~l~~~-----g~~v~~~~r~~~ 41 (249)
T PRK09135 7 KVALITGGARRIGAAIA-R---TLHAA-----GYRVAIHYHRSA 41 (249)
T ss_pred CEEEEeCCCchHHHHHH-H---HHHHC-----CCEEEEEcCCCH
Confidence 47999999998886432 1 12222 467888888643
No 76
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=27.48 E-value=2.7e+02 Score=20.92 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=38.2
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC------CChHHHHHHHHh
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK------LTDEELRNVISK 159 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~------~s~eefr~~vre 159 (164)
...+|.|-||.=- -++-+|.|-.|+++-. ..++.|||++..+ -+.++.++++.+
T Consensus 23 k~vvl~fwatwC~-C~~e~p~l~~l~~~~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~ 82 (152)
T cd00340 23 KVLLIVNVASKCG-FTPQYEGLEALYEKYK-DRGLVVLGFPCNQFGGQEPGSNEEIKEFCET 82 (152)
T ss_pred CEEEEEEEcCCCC-chHHHHHHHHHHHHhc-CCCEEEEEeccCccccCCCCCHHHHHHHHHH
Confidence 4577778788766 6677799999987642 3579999998643 234666666654
No 77
>PRK08628 short chain dehydrogenase; Provisional
Probab=27.20 E-value=62 Score=25.66 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=20.9
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCC
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 148 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~ 148 (164)
.++|.||+|.+++.-. ..|.+.| .+++.++|++.
T Consensus 9 ~ilItGasggiG~~la----~~l~~~G-----~~v~~~~r~~~ 42 (258)
T PRK08628 9 VVIVTGGASGIGAAIS----LRLAEEG-----AIPVIFGRSAP 42 (258)
T ss_pred EEEEeCCCChHHHHHH----HHHHHcC-----CcEEEEcCChh
Confidence 6899999999887543 1223333 34555666553
No 78
>PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA); InterPro: IPR010260 This entry is represents phage P4, Orf88. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. In Escherichia coli phage P4 Orf 88 is similar to AlpA of the CP4-57 cryptic prophage []. AlpA acts as a positive transcriptional regulator of slpA, a gene linked to alpA and necessary for suppression of lon mutants [, ]. The sequence of slpA suggests that it encodes an integrase gene closely related to phage P4 int and that both alpA and slpA are part of a cryptic P4-like prophage. Increase in alpA expression increases SlpA synthesis. Increased SlpA leads, in turn, to the excision and loss of the cryptic prophage. ; PDB: 1Z4H_A.
Probab=27.20 E-value=10 Score=24.44 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=13.4
Q ss_pred HHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHH
Q 031209 123 PALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 156 (164)
Q Consensus 123 PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~ 156 (164)
-.+|.+.++|.+|+.++|- -.+.-|..+|..++
T Consensus 18 ~ti~~~~k~g~FP~pvklg-~r~~~W~~~eV~~W 50 (51)
T PF05930_consen 18 STIYRLIKDGKFPKPVKLG-GRAVRWRESEVEAW 50 (51)
T ss_dssp HHHHHHHHHHH---SEESS-S-------------
T ss_pred HHHHHHHhcccCCCCEEEC-CCcccccccccccc
Confidence 4689999999999988863 22345666665544
No 79
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.83 E-value=54 Score=25.51 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=25.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 156 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~ 156 (164)
-.++|.||+|.++..- .-.| .+.| .+|+.++|+....++..+.
T Consensus 6 ~~~lItG~~g~iG~~~-a~~l---~~~G-----~~vi~~~r~~~~~~~~~~~ 48 (253)
T PRK08217 6 KVIVITGGAQGLGRAM-AEYL---AQKG-----AKLALIDLNQEKLEEAVAE 48 (253)
T ss_pred CEEEEECCCchHHHHH-HHHH---HHCC-----CEEEEEeCCHHHHHHHHHH
Confidence 3688999999998652 2222 2233 4677788765333333333
No 80
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.79 E-value=1.3e+02 Score=23.65 Aligned_cols=44 Identities=20% Similarity=0.086 Sum_probs=26.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|=+++.-. - .|...| ..|+.++|+....++..+.+
T Consensus 6 k~vlItGa~~~IG~~la-~---~l~~~G-----~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLA-V---RAARAG-----ADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHH-H---HHHHcC-----CEEEEEeCCHHHHHHHHHHH
Confidence 46899999998876432 1 122334 47777777664444444443
No 81
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=26.69 E-value=2.2e+02 Score=19.66 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=36.1
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHHh
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 159 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vre 159 (164)
...+|.|-++.=-.-++.+|.|-.++... ..++.|+++. +.+.++..+.+.+
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~--~~~~~vi~v~--~~~~~~~~~~~~~ 73 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAE--ADWLDVVLAS--DGEKAEHQRFLKK 73 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHh--cCCcEEEEEe--CCCHHHHHHHHHH
Confidence 45666677877777888999999987653 3468888774 3455666666543
No 82
>PRK08862 short chain dehydrogenase; Provisional
Probab=26.33 E-value=67 Score=25.87 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=26.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||++.+++.-. ..|.+. +.+|+.++|+.-..++..+.+
T Consensus 6 k~~lVtGas~GIG~aia----~~la~~-----G~~V~~~~r~~~~l~~~~~~i 49 (227)
T PRK08862 6 SIILITSAGSVLGRTIS----CHFARL-----GATLILCDQDQSALKDTYEQC 49 (227)
T ss_pred eEEEEECCccHHHHHHH----HHHHHC-----CCEEEEEcCCHHHHHHHHHHH
Confidence 36899999998876422 122333 357777888664444444443
No 83
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=25.38 E-value=46 Score=23.97 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=13.2
Q ss_pred CeEEEEEccchhhhhhhh
Q 031209 104 TLSITVVGASGDLAKKKI 121 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL 121 (164)
.-.++|+|| |+.|.||+
T Consensus 7 ~~~vlVvGg-G~va~~k~ 23 (103)
T PF13241_consen 7 GKRVLVVGG-GPVAARKA 23 (103)
T ss_dssp T-EEEEEEE-SHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHH
Confidence 346788888 99999987
No 84
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=24.87 E-value=64 Score=26.05 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=25.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 155 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~ 155 (164)
-.++|.||+|.+++.-. .. |.++| .+|+.++|++...++..+
T Consensus 11 k~vlVtGas~giG~~ia-~~---l~~~G-----~~V~~~~r~~~~~~~~~~ 52 (278)
T PRK08277 11 KVAVITGGGGVLGGAMA-KE---LARAG-----AKVAILDRNQEKAEAVVA 52 (278)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHHCC-----CEEEEEeCCHHHHHHHHH
Confidence 46899999999886533 22 23344 467777776533333333
No 85
>PRK08264 short chain dehydrogenase; Validated
Probab=24.00 E-value=52 Score=25.68 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=22.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
-+++|.||||-+++.-. .. |.+.|. -+|+.++|..
T Consensus 7 ~~vlItGgsg~iG~~la-~~---l~~~G~----~~V~~~~r~~ 41 (238)
T PRK08264 7 KVVLVTGANRGIGRAFV-EQ---LLARGA----AKVYAAARDP 41 (238)
T ss_pred CEEEEECCCchHHHHHH-HH---HHHCCc----ccEEEEecCh
Confidence 47999999999997643 22 233442 1566666643
No 86
>PRK08265 short chain dehydrogenase; Provisional
Probab=23.83 E-value=86 Score=25.25 Aligned_cols=35 Identities=14% Similarity=-0.090 Sum_probs=23.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 148 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~ 148 (164)
-.++|.||+|.+++.-. . .|.++| .+|+.++|+..
T Consensus 7 k~vlItGas~gIG~~ia-~---~l~~~G-----~~V~~~~r~~~ 41 (261)
T PRK08265 7 KVAIVTGGATLIGAAVA-R---ALVAAG-----ARVAIVDIDAD 41 (261)
T ss_pred CEEEEECCCChHHHHHH-H---HHHHCC-----CEEEEEeCCHH
Confidence 47899999999887643 2 223344 46777777653
No 87
>PRK08339 short chain dehydrogenase; Provisional
Probab=23.58 E-value=71 Score=25.98 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=26.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
..+|.||+|.+++.-- ..|.++| .+|+.++|+.-..++..+.+
T Consensus 10 ~~lItGas~gIG~aia----~~l~~~G-----~~V~~~~r~~~~~~~~~~~~ 52 (263)
T PRK08339 10 LAFTTASSKGIGFGVA----RVLARAG-----ADVILLSRNEENLKKAREKI 52 (263)
T ss_pred EEEEeCCCCcHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 6789999999887532 2233344 56777888654444444443
No 88
>PRK07109 short chain dehydrogenase; Provisional
Probab=23.23 E-value=81 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=28.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
-.++|.||+|-+++.-. ..|.+.| .+|+.++|++...++..+.++
T Consensus 9 k~vlITGas~gIG~~la----~~la~~G-----~~Vvl~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 9 QVVVITGASAGVGRATA----RAFARRG-----AKVVLLARGEEGLEALAAEIR 53 (334)
T ss_pred CEEEEECCCCHHHHHHH----HHHHHCC-----CEEEEEECCHHHHHHHHHHHH
Confidence 47999999999987532 2233344 567888887644455544443
No 89
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=23.19 E-value=63 Score=25.66 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=23.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 153 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eef 153 (164)
-.++|.||+|.++..-. ..| .+. +.+|+.++|.....++.
T Consensus 7 ~~vlItGas~~iG~~ia-~~l---~~~-----G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 7 KVALLTGAASGIGEAVA-ERY---LAE-----GARVVIADIKPARARLA 46 (257)
T ss_pred CEEEEeCCCchHHHHHH-HHH---HHc-----CCEEEEEcCCHHHHHHH
Confidence 36899999999986322 222 223 35677777765433333
No 90
>PRK07063 short chain dehydrogenase; Provisional
Probab=22.84 E-value=94 Score=24.71 Aligned_cols=45 Identities=18% Similarity=0.018 Sum_probs=27.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
-.++|.||+|-++..-. ..|.++| .+|+.++|++-..++..+.+.
T Consensus 8 k~vlVtGas~gIG~~~a----~~l~~~G-----~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 8 KVALVTGAAQGIGAAIA----RAFAREG-----AAVALADLDAALAERAAAAIA 52 (260)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 46899999998885422 2223333 578888886544455544443
No 91
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=22.82 E-value=2e+02 Score=23.03 Aligned_cols=44 Identities=14% Similarity=-0.012 Sum_probs=25.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.+++ ++...+.+ ++.+|+.++|++...++..+.+
T Consensus 11 k~~lItGa~~~iG~-----~ia~~l~~----~G~~vv~~~~~~~~~~~~~~~~ 54 (265)
T PRK07097 11 KIALITGASYGIGF-----AIAKAYAK----AGATIVFNDINQELVDKGLAAY 54 (265)
T ss_pred CEEEEeCCCchHHH-----HHHHHHHH----CCCeEEEEeCCHHHHHHHHHHH
Confidence 47899999998885 22222221 2356777777664444444433
No 92
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=22.56 E-value=2.6e+02 Score=20.02 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=35.3
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCC
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 148 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~ 148 (164)
.++.++.|-+++--.-+.-+|.|..++.+-. ..++.|||++..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~-~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELD-ALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHH-hcCeEEEEEeCCCH
Confidence 4567777789998888999999999987642 34699999987653
No 93
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.40 E-value=1e+02 Score=23.64 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.7
Q ss_pred EEEEEccchhhhhhh
Q 031209 106 SITVVGASGDLAKKK 120 (164)
Q Consensus 106 s~VIFGATGDLAkRK 120 (164)
.++|.||||.++...
T Consensus 8 ~vlItGasg~iG~~l 22 (249)
T PRK12825 8 VALVTGAARGLGRAI 22 (249)
T ss_pred EEEEeCCCchHHHHH
Confidence 789999999988654
No 94
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=22.39 E-value=57 Score=25.61 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
-.++|.||+|.++.--. ..|.++ +.+|+.++|+.
T Consensus 6 k~vlItGas~gIG~~ia----~~l~~~-----G~~vi~~~r~~ 39 (248)
T TIGR01832 6 KVALVTGANTGLGQGIA----VGLAEA-----GADIVGAGRSE 39 (248)
T ss_pred CEEEEECCCchHHHHHH----HHHHHC-----CCEEEEEcCch
Confidence 36899999998875432 122233 35677777754
No 95
>PRK07825 short chain dehydrogenase; Provisional
Probab=22.31 E-value=61 Score=26.10 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=21.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
-.++|.||||-+++...- .|...| ..|+.++|++
T Consensus 6 ~~ilVtGasggiG~~la~----~l~~~G-----~~v~~~~r~~ 39 (273)
T PRK07825 6 KVVAITGGARGIGLATAR----ALAALG-----ARVAIGDLDE 39 (273)
T ss_pred CEEEEeCCCchHHHHHHH----HHHHCC-----CEEEEEECCH
Confidence 368999999998865331 122333 4566677754
No 96
>PRK07201 short chain dehydrogenase; Provisional
Probab=22.22 E-value=1.4e+02 Score=27.44 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=27.4
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHH
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 156 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~ 156 (164)
.++|.||+|-+++... ..|.+.| .+|+.++|++-..++..+.
T Consensus 373 ~vlItGas~giG~~la----~~l~~~G-----~~V~~~~r~~~~~~~~~~~ 414 (657)
T PRK07201 373 VVLITGASSGIGRATA----IKVAEAG-----ATVFLVARNGEALDELVAE 414 (657)
T ss_pred EEEEeCCCCHHHHHHH----HHHHHCC-----CEEEEEECCHHHHHHHHHH
Confidence 6999999999997643 2233344 5788888876444444433
No 97
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=22.20 E-value=70 Score=28.34 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=23.2
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
...++|+||||-++..-+ ..| ...| ..|+++.|..
T Consensus 60 ~~kVLVtGatG~IG~~l~-~~L---l~~G-----~~V~~l~R~~ 94 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVV-REL---VRRG-----YNVVAVAREK 94 (390)
T ss_pred CCEEEEECCCcHHHHHHH-HHH---HHCC-----CEEEEEEech
Confidence 457999999999986543 332 3333 5677777754
No 98
>PRK06196 oxidoreductase; Provisional
Probab=22.05 E-value=67 Score=26.88 Aligned_cols=40 Identities=23% Similarity=0.084 Sum_probs=25.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 153 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eef 153 (164)
-.++|.||||-++..-. ..|.+.| .+|++++|+.-..++.
T Consensus 27 k~vlITGasggIG~~~a----~~L~~~G-----~~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 27 KTAIVTGGYSGLGLETT----RALAQAG-----AHVIVPARRPDVAREA 66 (315)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHH
Confidence 47999999998886543 1233334 5788888875333333
No 99
>PRK06500 short chain dehydrogenase; Provisional
Probab=22.01 E-value=64 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=21.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 147 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~ 147 (164)
-.++|.||+|-+++.-. ..| .+. +.+|+.++|++
T Consensus 7 k~vlItGasg~iG~~la-~~l---~~~-----g~~v~~~~r~~ 40 (249)
T PRK06500 7 KTALITGGTSGIGLETA-RQF---LAE-----GARVAITGRDP 40 (249)
T ss_pred CEEEEeCCCchHHHHHH-HHH---HHC-----CCEEEEecCCH
Confidence 36899999998886432 222 223 34677777753
No 100
>PRK07831 short chain dehydrogenase; Provisional
Probab=21.86 E-value=2.1e+02 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=24.2
Q ss_pred eEEEEEccch-hhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASG-DLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATG-DLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+| .++..-. -.|...| .+|+.++|++...++..+.+
T Consensus 18 k~vlItG~sg~gIG~~ia----~~l~~~G-----~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA----RRALEEG-----ARVVISDIHERRLGETADEL 62 (262)
T ss_pred CEEEEECCCcccHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHHH
Confidence 3689999987 7875432 1222333 34666666554434444433
No 101
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=21.82 E-value=1.9e+02 Score=23.10 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=23.2
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
.++|.||+|-++.... -.|... ...++..|+.++|+.-..++..+.+
T Consensus 2 ~vlItGas~GIG~~~a-~~la~~----~~~~g~~V~~~~r~~~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTIA-QELAKC----LKSPGSVLVLSARNDEALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHHH-HHHHHh----hccCCcEEEEEEcCHHHHHHHHHHH
Confidence 4678888888775321 122111 1112456666777654334444333
No 102
>PTZ00056 glutathione peroxidase; Provisional
Probab=21.59 E-value=3.1e+02 Score=22.18 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=40.5
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCC------CChHHHHHHHHh
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK------LTDEELRNVISK 159 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~------~s~eefr~~vre 159 (164)
...+|.|=||---.-++-+|.|-.|++.-. .+++.|||+...+ -+.++.++++.+
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~-~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~ 100 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFN-PLGLEILAFPTSQFLNQEFPNTKDIRKFNDK 100 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHh-cCceEEEEecchhccCCCCCCHHHHHHHHHH
Confidence 467888888887777888999999997642 4579999998642 244666666654
No 103
>PRK05855 short chain dehydrogenase; Validated
Probab=21.21 E-value=1.7e+02 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=28.5
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
.-.++|.||+|-+++... ..|..+ +.+|+.++|+.-..++..+.+
T Consensus 315 ~~~~lv~G~s~giG~~~a----~~l~~~-----G~~v~~~~r~~~~~~~~~~~~ 359 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETA----LAFARE-----GAEVVASDIDEAAAERTAELI 359 (582)
T ss_pred CCEEEEECCcCHHHHHHH----HHHHHC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 356899999999998643 223333 356888888754444444433
No 104
>PRK08589 short chain dehydrogenase; Validated
Probab=21.10 E-value=93 Score=25.30 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=25.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHH
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 157 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~v 157 (164)
-.++|.||+|.+++--. ..|.++ +.+|+.++|+ ...++..+.+
T Consensus 7 k~vlItGas~gIG~aia----~~l~~~-----G~~vi~~~r~-~~~~~~~~~~ 49 (272)
T PRK08589 7 KVAVITGASTGIGQASA----IALAQE-----GAYVLAVDIA-EAVSETVDKI 49 (272)
T ss_pred CEEEEECCCchHHHHHH----HHHHHC-----CCEEEEEeCc-HHHHHHHHHH
Confidence 36899999999886322 122233 3578888887 3334444433
No 105
>PLN02650 dihydroflavonol-4-reductase
Probab=20.89 E-value=1.3e+02 Score=25.45 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=24.4
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChH
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDE 151 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~e 151 (164)
.++|.||||=++...+ ..| ... +.+|+++.|+....+
T Consensus 7 ~iLVTGatGfIGs~l~-~~L---~~~-----G~~V~~~~r~~~~~~ 43 (351)
T PLN02650 7 TVCVTGASGFIGSWLV-MRL---LER-----GYTVRATVRDPANVK 43 (351)
T ss_pred EEEEeCCcHHHHHHHH-HHH---HHC-----CCEEEEEEcCcchhH
Confidence 6999999999887644 333 223 357777777654333
No 106
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.87 E-value=2.1e+02 Score=22.40 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.7
Q ss_pred eEEEEEccchhhhhh
Q 031209 105 LSITVVGASGDLAKK 119 (164)
Q Consensus 105 ~s~VIFGATGDLAkR 119 (164)
-.++|+||+|.++..
T Consensus 5 ~~vlItGa~g~iG~~ 19 (250)
T PRK08063 5 KVALVTGSSRGIGKA 19 (250)
T ss_pred CEEEEeCCCchHHHH
Confidence 378999999999875
No 107
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.68 E-value=1.2e+02 Score=24.14 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=21.7
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCC
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYART 146 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~ 146 (164)
.-.++|.||+|.++..-. ..|... +.+++.++|+
T Consensus 15 ~k~vlItGas~gIG~~ia----~~l~~~-----G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYA----VALAKA-----GADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHH----HHHHHC-----CCEEEEEeCC
Confidence 357999999999985432 122233 3566777776
No 108
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.45 E-value=2.6e+02 Score=20.65 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=33.3
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 104 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 104 ~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
.-.+||+.+-||++ |++-.|-..| .+|+.++.......++++.+.
T Consensus 100 ~d~ivLvSgD~Df~-----~~i~~lr~~G-----~~V~v~~~~~~~s~~L~~~~d 144 (149)
T cd06167 100 IDTIVLVSGDSDFV-----PLVERLRELG-----KRVIVVGFEAKTSRELRKAAD 144 (149)
T ss_pred CCEEEEEECCccHH-----HHHHHHHHcC-----CEEEEEccCccChHHHHHhCC
Confidence 45788888899875 9999998886 566666666666677766543
No 109
>PF11313 DUF3116: Protein of unknown function (DUF3116); InterPro: IPR021464 This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=20.36 E-value=41 Score=25.03 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=27.1
Q ss_pred EEEEEccchhhhhhhhHHHHHHhHHcCCC
Q 031209 106 SITVVGASGDLAKKKIFPALFALYYEDCL 134 (164)
Q Consensus 106 s~VIFGATGDLAkRKL~PALy~L~~~g~L 134 (164)
.++.|++.+|+++..|+=++|.|...|.+
T Consensus 29 e~~~~~~~~~~TKNelL~~vYWLE~ngyI 57 (85)
T PF11313_consen 29 EFIDFPGAYDFTKNELLYTVYWLEENGYI 57 (85)
T ss_pred HHHhccccccccHHHHHHHHHHHhhcCee
Confidence 47899999999999999999999999986
No 110
>PRK06198 short chain dehydrogenase; Provisional
Probab=20.16 E-value=81 Score=24.93 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=22.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcE-EEEEeCCCC
Q 031209 105 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFT-VFGYARTKL 148 (164)
Q Consensus 105 ~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~-IIG~aR~~~ 148 (164)
-.++|.||+|-++.... ..|...| .+ |+.++|++.
T Consensus 7 k~vlItGa~g~iG~~la----~~l~~~G-----~~~V~~~~r~~~ 42 (260)
T PRK06198 7 KVALVTGGTQGLGAAIA----RAFAERG-----AAGLVICGRNAE 42 (260)
T ss_pred cEEEEeCCCchHHHHHH----HHHHHCC-----CCeEEEEcCCHH
Confidence 46889999998887543 2223344 34 777777643
No 111
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=20.08 E-value=3.4e+02 Score=19.64 Aligned_cols=53 Identities=13% Similarity=-0.068 Sum_probs=34.6
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHhHHcCCCCCCcEEEEEeCCCCChHHHHHHHH
Q 031209 103 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 158 (164)
Q Consensus 103 ~~~s~VIFGATGDLAkRKL~PALy~L~~~g~LP~~~~IIG~aR~~~s~eefr~~vr 158 (164)
..+.++.|.|+.--.-++-+|.|-.++.+-. ..++.||+++-.+ .+...++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d~--~~~~~~~~~ 81 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFE-AAGAEVLGISVDS--PFSLRAWAE 81 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHH-hCCCEEEEecCCC--HHHHHHHHH
Confidence 3455666656655556788999998886532 3579999998643 444555443
No 112
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=20.02 E-value=1.7e+02 Score=23.02 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=25.2
Q ss_pred EEEccchhhhhhhhHHHHHHhHHcCC-CCCCcEEEEEeCCCC
Q 031209 108 TVVGASGDLAKKKIFPALFALYYEDC-LPEDFTVFGYARTKL 148 (164)
Q Consensus 108 VIFGATGDLAkRKL~PALy~L~~~g~-LP~~~~IIG~aR~~~ 148 (164)
.||+.++.+|.. ++..|...|. +|+++.|+|++..++
T Consensus 180 ai~~~~d~~a~g----~~~~l~~~g~~ip~di~v~g~d~~~~ 217 (268)
T cd06270 180 AVFCANDEMAAG----AISALREHGISVPQDVSIIGFDDVLL 217 (268)
T ss_pred EEEEcCcHHHHH----HHHHHHHcCCCCCCceeEEEecCchH
Confidence 677777777643 3344444564 799999999987654
Done!