BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031212
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At5g01750
pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At5g01750
Length = 217
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 6 PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHXXXXXXXXXXXXXXX 65
P Y A P P+D + +K LT G+ D +G+++++V
Sbjct: 30 PKYCA--PYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEP-------VFGLHDKRVL 80
Query: 66 XDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS 122
D +G P++++ + WQ F+G ++++L++ V R+ +T+ +VF+ N
Sbjct: 81 LDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFL-GHNK 139
Query: 123 EDSASHFTIKGSPFQKSCTIYRGNS--IIAQSH 153
++ F +KGS ++SC +Y G S I+AQ H
Sbjct: 140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQXH 172
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 83 LWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFI---VDENS--EDSASHFTIKGSPFQ 137
+W G G G K L+ +++++K + ++F VDEN+ E++AS Q
Sbjct: 122 MWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALA---HAVQ 178
Query: 138 KSCTIYRGNSIIAQSHVQASADLCEK 163
+Y G S + Q +L +
Sbjct: 179 SGKALYVGISSYSPERTQKMVELLRE 204
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 83 LWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFI---VDENS--EDSASHFTIKGSPFQ 137
+W G G G K L+ +++++K + ++F VDEN+ E++AS Q
Sbjct: 102 MWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALA---HAVQ 158
Query: 138 KSCTIYRGNSIIAQSHVQASADLCEK 163
+Y G S + Q +L +
Sbjct: 159 SGKALYVGISSYSPERTQKMVELLRE 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,475,842
Number of Sequences: 62578
Number of extensions: 156890
Number of successful extensions: 298
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 5
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)