BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031212
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWL2|LOR7_ARATH Protein LURP-one-related 7 OS=Arabidopsis thaliana GN=At2g30270
PE=2 SV=1
Length = 182
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 14/142 (9%)
Query: 14 IPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPL 73
IPVDLF SKK PGL+ GD+GFADSS +++ + ++ KS +G PL
Sbjct: 18 IPVDLFASKKLPGLSSGDLGFADSSEHLVFILRKSSSSLKSLLDS----------SGVPL 67
Query: 74 ISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKG 133
S+ R G+W+ KGD + K+L+ V RT K ++TE EV E+SE+ IKG
Sbjct: 68 FSISRLHNGVWELHKGDVEKRKDLVLTVKRTSKRFSKTESEVSFAGESSEN----LVIKG 123
Query: 134 SPFQKSCTIYRGNSIIAQSHVQ 155
PFQKSCTIY +SI+AQ+ +
Sbjct: 124 VPFQKSCTIYSQDSIVAQTSLM 145
>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750
PE=1 SV=1
Length = 217
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 82/153 (53%), Gaps = 15/153 (9%)
Query: 6 PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVV 65
P Y A P P+D+ + +K LT G+ D +G+++++V K + V+
Sbjct: 30 PKYCA--PYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKV-------KEPVFGLHDKRVL 80
Query: 66 VDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS 122
+D +G P++++ + + WQ F+G ++++L++ V R+ +T+ +VF+ N
Sbjct: 81 LDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFL-GHNK 139
Query: 123 EDSASHFTIKGSPFQKSCTIYRGNS--IIAQSH 153
++ F +KGS ++SC +Y G S I+AQ H
Sbjct: 140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMH 172
>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740
PE=2 SV=2
Length = 194
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 1 MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRR 60
MA P + A P P++L + +K LT G+ D +G+++++V S S +R
Sbjct: 1 MAIVSPNFCA--PYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLF---SISDKR- 54
Query: 61 KRVVVVDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRT-MKTLTRTEFEVF 116
+++D+ P++++ L W ++G ++ +L++ + R+ M + + + ++F
Sbjct: 55 ---ILLDAYDTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIF 111
Query: 117 IVDENSEDSASHFTIKGSPFQKSCTIYRGNS--IIAQSHVQASA 158
+ N E F +KGS +SC +Y G S I+AQ H + +A
Sbjct: 112 LA-HNKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTA 154
>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1
Length = 207
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
SP PV L + +K +T G+ + G ++++V S KR+++ D +G
Sbjct: 14 SPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLF------SLHGKRILL-DCSGA 66
Query: 72 PLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASH 128
++++ + + WQ F+G EE L++ V R+ + EVF+ + N E+
Sbjct: 67 KVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLAN-NVEEKICD 125
Query: 129 FTIKGSPFQKSCTIYRGNSIIAQSHV 154
F +KG+ SC +Y G+S +H+
Sbjct: 126 FKVKGAWLDDSCVVYAGDSDTIIAHM 151
>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900
PE=3 SV=1
Length = 185
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 27/148 (18%)
Query: 13 PIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72
P P+DL ++ GD D++G+ +++V K+ + ++VD +P
Sbjct: 23 PQPLDLTIT--------GD-TVKDATGNKVFKV-------KTPLFGLHNKRILVDPNDSP 66
Query: 73 LISVY-----RQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSAS 127
++++ + D+ WQ ++G D ++K IF V R+ +T EVF+ + +S+
Sbjct: 67 IVTMKMKVTSKHDR--WQVYRGSDLDDK--IFTVKRSSTVQLKTRVEVFLKHNQTRESSC 122
Query: 128 HFTIKGSPFQKSCTIYRGNS--IIAQSH 153
FTIKG +++CTIY +S IIAQ +
Sbjct: 123 DFTIKGRFMKRACTIYVADSTKIIAQVY 150
>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840
PE=2 SV=2
Length = 224
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Query: 15 PVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74
PVDL + +K +T G+ ++ G+++++V K ++ +++D G ++
Sbjct: 37 PVDLAIVRKVLKITDGNFVITNAEGNLLFKV-------KDPFFSLHEKRILMDGFGTKVL 89
Query: 75 SVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTI 131
++ + + W F+G EE +L++ V R+ T+ +VF+ D N E + +
Sbjct: 90 TLKGKIMTMHDRWLVFRGGSTEEVDLLYTVKRSNMVQITTKLDVFLAD-NIEQKKCDYRL 148
Query: 132 KGSPFQKSCTIYRGNS--IIAQ 151
+G + SC +Y G+S I+AQ
Sbjct: 149 EGVWLETSCFVYAGDSDIILAQ 170
>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180
PE=2 SV=2
Length = 204
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
+P P+DL V +K ++ D SG+++ +++ RKRV+ D AG
Sbjct: 25 NPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAW------GFNRKRVMR-DPAGF 77
Query: 72 PLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS--EDSA 126
++S+ ++ L W+ G+ E ++L+F V ++ +T +VF+ + N+ + +
Sbjct: 78 TILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQAVSLKTSVDVFLPENNNVKKTNT 137
Query: 127 SHFTIKGSPFQKSCTIYRGNSIIA 150
F G S +++ +++IA
Sbjct: 138 CDFHASGGYSNISFKVFKADALIA 161
>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640
PE=2 SV=1
Length = 196
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 36 DSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGE-E 94
+++G++++RV+ + + N +V++D++G PL+S+ R+ L + DGE E
Sbjct: 43 NANGELVFRVDNYMNCPRDN-------IVLMDASGFPLLSIRRKKLSLGDCWMVYDGETE 95
Query: 95 KELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTI 142
++ IF + + ++ + ++ S + I+GS Q+SC I
Sbjct: 96 RDPIFTARKNVSIISNRKSLAWV----SAKKTVLYEIEGSYGQRSCKI 139
>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590
PE=2 SV=2
Length = 221
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 33 GFA--DSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDK----GLWQG 86
GF DS+GD+IYRV+ + + R + ++++D GN L+ ++R K W
Sbjct: 52 GFTVIDSNGDLIYRVD-------NYARTRPEELILMDKDGNSLLLMHRTKKITLVDSWGI 104
Query: 87 FKGDD--GEEK-----ELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKS 139
++ +D GE K + N M L+ + V S D + + IKGS KS
Sbjct: 105 YEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKS 164
Query: 140 CTI 142
C I
Sbjct: 165 CKI 167
>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986
PE=3 SV=1
Length = 197
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
+P +L V ++ L R D S ++I+ V+ + RRKRV+ D+AG
Sbjct: 11 NPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVD------GGIWNIRRKRVLR-DAAGI 63
Query: 72 PLISVYRQDKGL------WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFI-VDENSED 124
PL+S+ + KGL W+ +KGD E L+F +T +V + D++S D
Sbjct: 64 PLLSM--RTKGLVPMRYNWEVYKGDSTESDNLLFSAREPNLLSFKTSLDVTLPPDQSSTD 121
Query: 125 SAS 127
+S
Sbjct: 122 ISS 124
>sp|Q8KA45|FLIF_BUCAP Flagellar M-ring protein OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=fliF PE=3 SV=1
Length = 556
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 14 IPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNS 56
+P+++ KK L R IG++ GD +Y VN + Q NS
Sbjct: 404 VPINVEQIKKIKNLVREAIGYSKVRGDSVYVVNESFFQKNKNS 446
>sp|Q10914|GLR2_CAEEL Glutamate receptor 2 OS=Caenorhabditis elegans GN=glr-2 PE=1 SV=3
Length = 977
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 47 RTQHQSKSNSSQRRKRVV----------VVDSAGNPLISVYRQDKGLWQGFKGDDGEEKE 96
R + K +SSQ RK ++ VV P + + R++ G + KG+D E
Sbjct: 463 RYVQEKKKDSSQTRKGILPSKPWQLRFNVVTVLVKPFVMLKRRNPGEPE-LKGNDRFEGY 521
Query: 97 LIFKVNRTMKTLTRTEFEVFIVDEN 121
I +N K +T E++VFI D N
Sbjct: 522 CIDLLNLLAKNITGFEYDVFISDGN 546
>sp|Q8PCJ2|SECA_XANCP Protein translocase subunit SecA OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=secA PE=3 SV=1
Length = 912
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 18 LFVSKKYPGLTRGDIGFADSSGDVIYRVNR---------TQHQSKSNSSQRRKRVVVVDS 68
L V YPG+ D A + D+ Y N S+++ QR+ +VD
Sbjct: 152 LSVGVVYPGMPHSD-KHAAYAADITYGTNNEFGFDYLRDNMALSRADRYQRKLHYAIVDE 210
Query: 69 AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFE 114
+ LI R + G E EL +VNR + LT+ E E
Sbjct: 211 VDSILIDEARTPLII----SGPADESPELYIRVNRIVPQLTKQESE 252
>sp|B0RV96|SECA_XANCB Protein translocase subunit SecA OS=Xanthomonas campestris pv.
campestris (strain B100) GN=secA PE=3 SV=1
Length = 912
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 18 LFVSKKYPGLTRGDIGFADSSGDVIYRVNR---------TQHQSKSNSSQRRKRVVVVDS 68
L V YPG+ D A + D+ Y N S+++ QR+ +VD
Sbjct: 152 LSVGVVYPGMPHSD-KHAAYAADITYGTNNEFGFDYLRDNMALSRADRYQRKLHYAIVDE 210
Query: 69 AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFE 114
+ LI R + G E EL +VNR + LT+ E E
Sbjct: 211 VDSILIDEARTPLII----SGPADESPELYIRVNRIVPQLTKQESE 252
>sp|Q4UQX9|SECA_XANC8 Protein translocase subunit SecA OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=secA PE=3 SV=1
Length = 912
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 18 LFVSKKYPGLTRGDIGFADSSGDVIYRVNR---------TQHQSKSNSSQRRKRVVVVDS 68
L V YPG+ D A + D+ Y N S+++ QR+ +VD
Sbjct: 152 LSVGVVYPGMPHSD-KHAAYAADITYGTNNEFGFDYLRDNMALSRADRYQRKLHYAIVDE 210
Query: 69 AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFE 114
+ LI R + G E EL +VNR + LT+ E E
Sbjct: 211 VDSILIDEARTPLII----SGPADESPELYIRVNRIVPQLTKQESE 252
>sp|A1AV60|SECA_RUTMC Protein translocase subunit SecA OS=Ruthia magnifica subsp.
Calyptogena magnifica GN=secA PE=3 SV=1
Length = 892
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 64 VVVDSAGNPLI---------SVYRQDKGLWQGF--KGDDGEEKELIFKVNRTMKTLTRTE 112
+++D A PLI +Y+ + F + ++GE KE++ +V T+
Sbjct: 216 ILIDEARTPLIISGPVDDYAQIYQTINHMIPNFTKQIENGEGKEIVIEVAGDY-TVDEKH 274
Query: 113 FEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQAS 157
+VF+ D + A H I + ++Y ++I+ H+ ++
Sbjct: 275 KQVFLTD-DGHGKAEHLLIDAEALPEGVSLYDASNILLMQHINSA 318
>sp|Q197F6|VF067_IIV3 Uncharacterized protein 004R OS=Invertebrate iridescent virus 3
GN=IIV3-004R PE=3 SV=1
Length = 451
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 71 NPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSE 123
NPLI+V+ + K +D ++EL+FK R +T + + F + N E
Sbjct: 226 NPLINVFED----YPQAKDEDDHKRELLFKFKRLRQTYPKVDIPDFTMLSNHE 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,793,111
Number of Sequences: 539616
Number of extensions: 2345746
Number of successful extensions: 5501
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5485
Number of HSP's gapped (non-prelim): 33
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)