Query 031212
Match_columns 164
No_of_seqs 104 out of 369
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 9.3E-37 2E-41 240.8 15.5 148 1-157 1-157 (187)
2 COG4894 Uncharacterized conser 99.9 8E-24 1.7E-28 160.2 4.5 119 15-156 5-126 (159)
3 PF03803 Scramblase: Scramblas 99.3 3.9E-10 8.5E-15 90.6 16.6 131 17-157 23-178 (221)
4 COG4894 Uncharacterized conser 98.2 4.6E-06 1E-10 63.8 6.2 100 11-120 25-140 (159)
5 PF04525 Tub_2: Tubby C 2; In 97.9 0.00019 4E-09 56.5 10.2 60 12-79 35-99 (187)
6 PF03803 Scramblase: Scramblas 96.8 0.0042 9.2E-08 49.7 6.5 79 30-119 106-197 (221)
7 KOG0621 Phospholipid scramblas 95.7 0.19 4.2E-06 42.7 11.0 135 15-158 80-239 (292)
8 PF02974 Inh: Protease inhibit 84.1 5.5 0.00012 28.3 6.4 34 58-91 59-92 (99)
9 PF13860 FlgD_ig: FlgD Ig-like 74.3 5 0.00011 27.1 3.5 17 31-47 28-44 (81)
10 PF04790 Sarcoglycan_1: Sarcog 71.8 7.1 0.00015 32.8 4.5 21 29-49 117-138 (264)
11 KOG0621 Phospholipid scramblas 70.9 16 0.00035 31.2 6.5 52 29-81 187-238 (292)
12 KOG3950 Gamma/delta sarcoglyca 69.8 5.3 0.00012 33.5 3.3 48 18-71 127-174 (292)
13 cd05828 Sortase_D_4 Sortase D 64.9 11 0.00024 27.6 3.9 20 60-79 65-84 (127)
14 PRK15393 NUDIX hydrolase YfcD; 64.5 22 0.00048 27.5 5.7 58 31-90 11-73 (180)
15 cd06166 Sortase_D_5 Sortase D 63.5 13 0.00029 27.1 4.1 17 60-76 68-84 (126)
16 PF15529 Toxin_49: Putative to 63.1 7.5 0.00016 27.5 2.5 27 20-48 22-48 (89)
17 TIGR03784 marine_sortase sorta 62.2 15 0.00032 28.8 4.3 20 60-79 112-132 (174)
18 COG5436 Predicted integral mem 62.2 21 0.00045 28.1 5.0 52 12-72 76-127 (182)
19 PF01167 Tub: Tub family; Int 59.8 64 0.0014 26.6 7.9 62 82-146 25-88 (246)
20 PF12396 DUF3659: Protein of u 58.8 21 0.00046 23.6 4.0 40 32-77 13-57 (64)
21 TIGR02150 IPP_isom_1 isopenten 58.5 28 0.0006 26.2 5.2 55 32-87 1-60 (158)
22 smart00634 BID_1 Bacterial Ig- 54.8 41 0.00088 23.0 5.1 40 32-77 24-69 (92)
23 cd03676 Nudix_hydrolase_3 Memb 54.7 56 0.0012 25.0 6.4 61 27-90 2-72 (180)
24 PRK12816 flgG flagellar basal 52.2 22 0.00048 29.6 4.0 40 28-75 98-138 (264)
25 PF08269 Cache_2: Cache domain 51.2 3.2 6.9E-05 28.6 -1.0 38 30-74 57-94 (95)
26 PF12142 PPO1_DWL: Polyphenol 51.2 12 0.00026 24.0 1.7 19 30-49 10-28 (54)
27 PF12091 DUF3567: Protein of u 50.4 15 0.00032 25.8 2.3 40 4-48 6-45 (85)
28 PRK12691 flgG flagellar basal 50.2 36 0.00078 28.1 5.0 40 28-75 98-138 (262)
29 cd02885 IPP_Isomerase Isopente 48.7 31 0.00068 26.0 4.1 54 32-87 4-63 (165)
30 TIGR02488 flgG_G_neg flagellar 48.4 26 0.00057 28.9 3.9 40 28-75 96-136 (259)
31 PF04170 NlpE: NlpE N-terminal 48.2 81 0.0018 21.6 5.8 14 60-73 70-83 (87)
32 PRK12694 flgG flagellar basal 48.0 28 0.00061 28.8 4.0 40 28-75 98-138 (260)
33 PRK06655 flgD flagellar basal 47.4 26 0.00057 28.6 3.7 18 61-78 128-145 (225)
34 PRK00122 rimM 16S rRNA-process 46.4 57 0.0012 25.1 5.3 16 32-47 108-123 (172)
35 PRK12693 flgG flagellar basal 45.3 37 0.00081 27.9 4.3 40 28-75 98-138 (261)
36 PF05593 RHS_repeat: RHS Repea 45.1 50 0.0011 18.9 3.7 31 35-75 1-31 (38)
37 TIGR02273 16S_RimM 16S rRNA pr 44.7 49 0.0011 25.3 4.7 14 65-78 105-118 (165)
38 PRK12633 flgD flagellar basal 44.4 35 0.00076 27.9 4.0 18 61-78 131-148 (230)
39 cd05830 Sortase_D_5 Sortase D 44.1 40 0.00087 24.9 4.0 20 60-79 69-88 (137)
40 PF03983 SHD1: SLA1 homology d 43.7 43 0.00093 22.6 3.6 35 34-76 15-49 (70)
41 PRK12634 flgD flagellar basal 43.5 44 0.00096 27.2 4.4 17 62-78 125-141 (221)
42 PLN02552 isopentenyl-diphospha 42.6 76 0.0016 26.3 5.7 61 30-90 23-92 (247)
43 PHA00458 single-stranded DNA-b 42.5 29 0.00064 28.6 3.2 41 34-74 98-139 (233)
44 PF12690 BsuPI: Intracellular 40.7 20 0.00044 24.5 1.7 16 31-46 27-42 (82)
45 cd00004 Sortase Sortases are c 40.1 54 0.0012 23.6 4.1 20 60-79 68-87 (128)
46 PRK14591 rimM 16S rRNA-process 39.8 72 0.0016 24.6 5.0 11 67-77 112-122 (169)
47 PRK13828 rimM 16S rRNA-process 39.6 77 0.0017 24.2 5.0 16 32-47 88-103 (161)
48 smart00108 B_lectin Bulb-type 39.5 79 0.0017 22.2 4.8 15 30-44 64-78 (114)
49 PF15072 DUF4539: Domain of un 39.3 62 0.0013 22.5 4.0 24 60-83 20-43 (86)
50 cd00028 B_lectin Bulb-type man 38.2 92 0.002 22.0 5.0 14 30-43 65-78 (116)
51 PF06357 Omega-toxin: Omega-at 38.1 28 0.0006 20.4 1.7 11 36-46 27-37 (37)
52 PF11141 DUF2914: Protein of u 37.7 46 0.001 21.8 3.0 17 62-78 47-63 (66)
53 cd06165 Sortase_A_1 Sortase A 37.4 58 0.0013 23.5 3.9 19 60-78 67-85 (127)
54 PRK14590 rimM 16S rRNA-process 35.9 98 0.0021 24.0 5.1 10 32-41 105-114 (171)
55 PRK12813 flgD flagellar basal 35.8 41 0.00089 27.5 3.1 16 62-77 127-142 (223)
56 PF01947 DUF98: Protein of unk 35.7 31 0.00067 26.2 2.2 34 129-162 114-147 (149)
57 PF09475 Dot_icm_IcmQ: Dot/Icm 35.7 12 0.00026 29.5 0.0 59 5-80 95-153 (179)
58 PRK12812 flgD flagellar basal 35.6 66 0.0014 27.0 4.3 36 32-73 145-182 (259)
59 PRK14592 rimM 16S rRNA-process 35.4 97 0.0021 23.7 5.0 13 66-78 103-115 (165)
60 PF04592 SelP_N: Selenoprotein 33.6 34 0.00073 28.4 2.2 27 20-47 102-128 (238)
61 PF07661 MORN_2: MORN repeat v 33.6 63 0.0014 15.6 2.6 16 30-45 3-18 (22)
62 PF13098 Thioredoxin_2: Thiore 33.5 39 0.00084 23.1 2.3 19 31-49 85-103 (112)
63 TIGR01076 sortase_fam LPXTG-si 33.5 82 0.0018 23.2 4.2 20 60-79 67-86 (136)
64 PF09008 Head_binding: Head bi 32.8 1.1E+02 0.0025 22.4 4.6 45 21-78 61-105 (114)
65 PF14269 Arylsulfotran_2: Aryl 32.3 2E+02 0.0044 24.2 6.9 62 17-79 10-77 (299)
66 PRK05874 L-fuculose-phosphate 32.2 53 0.0012 26.4 3.2 47 23-74 22-68 (217)
67 PRK03759 isopentenyl-diphospha 32.2 70 0.0015 24.7 3.8 46 31-77 7-53 (184)
68 cd05829 Sortase_E Sortase E (S 32.0 86 0.0019 23.4 4.2 19 60-78 76-95 (144)
69 PRK10893 lipopolysaccharide ex 29.5 1.6E+02 0.0036 23.2 5.5 49 31-79 49-100 (192)
70 PRK12817 flgG flagellar basal 29.4 83 0.0018 26.0 4.0 37 31-75 98-134 (260)
71 PF02974 Inh: Protease inhibit 28.9 2E+02 0.0044 20.1 5.4 24 25-48 57-80 (99)
72 PF13511 DUF4124: Domain of un 28.8 51 0.0011 20.5 2.1 16 31-46 15-30 (60)
73 PRK12818 flgG flagellar basal 28.7 85 0.0018 25.9 3.9 37 31-75 102-138 (256)
74 PRK10523 lipoprotein involved 28.3 77 0.0017 26.2 3.5 12 62-73 116-127 (234)
75 PF01453 B_lectin: D-mannose b 28.2 1.3E+02 0.0027 21.5 4.3 23 25-47 23-46 (114)
76 PF09629 YorP: YorP protein; 28.0 78 0.0017 20.9 2.8 32 16-48 29-60 (71)
77 PF06788 UPF0257: Uncharacteri 27.4 1.5E+02 0.0032 24.7 5.0 18 33-50 52-69 (236)
78 PRK12640 flgF flagellar basal 26.8 80 0.0017 26.0 3.4 37 31-75 87-123 (246)
79 PF12098 DUF3574: Protein of u 26.6 52 0.0011 23.8 2.0 23 27-50 34-56 (104)
80 PF13585 CHU_C: C-terminal dom 26.1 59 0.0013 22.2 2.1 24 27-50 26-49 (87)
81 TIGR03067 Planc_TIGR03067 Plan 26.0 2.5E+02 0.0053 20.0 7.8 58 23-89 31-95 (107)
82 PF09151 DUF1936: Domain of un 26.0 66 0.0014 18.4 1.9 17 33-49 14-31 (36)
83 PRK12819 flgG flagellar basal 25.7 1.1E+02 0.0024 25.2 4.1 37 30-74 99-135 (257)
84 PF11906 DUF3426: Protein of u 24.0 1.9E+02 0.004 21.3 4.7 37 38-75 65-103 (149)
85 smart00412 Cu_FIST Copper-Fist 24.0 34 0.00073 20.5 0.5 25 57-81 13-37 (39)
86 PF11191 DUF2782: Protein of u 23.3 1.1E+02 0.0024 21.6 3.3 29 60-88 70-104 (105)
87 PF06228 ChuX_HutX: Haem utili 23.1 1.3E+02 0.0028 22.8 3.7 57 15-77 50-120 (141)
88 COG3565 Predicted dioxygenase 22.9 92 0.002 23.4 2.7 26 40-73 99-124 (138)
89 TIGR03406 FeS_long_SufT probab 22.0 62 0.0013 25.4 1.8 28 17-50 25-52 (174)
90 PRK13239 alkylmercury lyase; P 21.8 1.2E+02 0.0026 24.6 3.4 33 33-78 63-97 (206)
91 PRK05483 rplN 50S ribosomal pr 21.3 86 0.0019 23.3 2.3 20 57-76 78-97 (122)
92 PF11589 DUF3244: Domain of un 21.1 75 0.0016 22.4 1.9 17 32-48 52-68 (106)
93 smart00800 uDENN Domain always 21.0 95 0.0021 21.1 2.4 11 62-72 70-80 (89)
94 TIGR03066 Gem_osc_para_1 Gemma 21.0 1.4E+02 0.003 21.9 3.3 22 58-79 90-111 (111)
95 TIGR01643 YD_repeat_2x YD repe 20.8 1.8E+02 0.0038 16.4 3.6 12 64-75 20-31 (42)
96 cd02966 TlpA_like_family TlpA- 20.8 99 0.0021 20.2 2.5 18 30-47 99-116 (116)
97 COG3764 SrtA Sortase (surface 20.2 2.2E+02 0.0047 23.1 4.6 41 29-76 138-179 (210)
98 TIGR00156 conserved hypothetic 20.2 97 0.0021 23.2 2.4 20 61-80 73-92 (126)
99 CHL00057 rpl14 ribosomal prote 20.1 85 0.0018 23.3 2.1 20 57-76 78-97 (122)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=9.3e-37 Score=240.79 Aligned_cols=148 Identities=30% Similarity=0.543 Sum_probs=89.0
Q ss_pred CcccccccCCCCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEec-cccCCcCCccccCCeEEEECCCCCeeEEEEec
Q 031212 1 MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNR-TQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 1 ~~~v~~~~c~~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg-~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K 79 (164)
.++|+++|| +++|++|+||||.+++.+|+|+|+|++|+++|+|+| +.+ ++ ++++.|+|++|+||++|++|
T Consensus 1 ~~vv~~~~~--~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~------s~-~~~~~l~D~~G~~L~~i~~k 71 (187)
T PF04525_consen 1 AVVVDAQYC--SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFF------SI-GKKRTLMDASGNPLFTIRRK 71 (187)
T ss_dssp --SS-GGGB---SS-EEEEEE----------EEEEETTS-EEEEEE--SCT------TB-TTEEEEE-TTS-EEEEEE--
T ss_pred CcEECHHHc--CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEeccc------CC-CCEEEEECCCCCEEEEEEee
Confidence 378999999 999999999999999999999999999999999999 777 77 55779999999999999998
Q ss_pred C---CCceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCCC----CCCcceEEEEcccCCceeEEE-ECCeEEEE
Q 031212 80 D---KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS----EDSASHFTIKGSPFQKSCTIY-RGNSIIAQ 151 (164)
Q Consensus 80 ~---~~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~----~~~~~~~~i~G~~~~~s~~I~-~~~~~VA~ 151 (164)
+ +++|++|.+++.++++|+|+||+++.+..++++.+|+.+... ....++|+|+|||++++|+|+ .++++||+
T Consensus 72 ~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~ 151 (187)
T PF04525_consen 72 LFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAE 151 (187)
T ss_dssp ------EEEEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEE
T ss_pred ecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEE
Confidence 5 499999999988888899999999767778899999874421 346789999999999999999 55799999
Q ss_pred EeecCC
Q 031212 152 SHVQAS 157 (164)
Q Consensus 152 v~rk~~ 157 (164)
|+||..
T Consensus 152 i~rk~~ 157 (187)
T PF04525_consen 152 ISRKYS 157 (187)
T ss_dssp EEE---
T ss_pred Eecccc
Confidence 998765
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=8e-24 Score=160.15 Aligned_cols=119 Identities=18% Similarity=0.336 Sum_probs=106.4
Q ss_pred cEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC---CCceeEEecCC
Q 031212 15 PVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD---KGLWQGFKGDD 91 (164)
Q Consensus 15 ~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~---~~~w~~~~g~~ 91 (164)
+.+|.|+||+.++++ .|.|||..|+.+|+|+|..+ ++ ++.|++.|++|.+|.+|++|+ .+++++-.|++
T Consensus 5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f------~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g 76 (159)
T COG4894 5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFF------SI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG 76 (159)
T ss_pred hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEE------ee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCC
Confidence 567999999888866 99999999999999999998 78 667999999999999999997 49999999985
Q ss_pred CCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcccCCceeEEEECCeEEEEEeecC
Q 031212 92 GEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQSHVQA 156 (164)
Q Consensus 92 ~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~~~~~s~~I~~~~~~VA~v~rk~ 156 (164)
-++.|+|+. +++|+++.+. ..+|+|+||+|+.+|++.++++++|+|+||+
T Consensus 77 -----~~~~vrKK~-tf~Rdk~e~d---------~~~~eihGNi~d~efkl~dg~~~~aeVsKkw 126 (159)
T COG4894 77 -----TVCEVRKKV-TFSRDKFEID---------GLNWEIHGNIWDDEFKLTDGENVRAEVSKKW 126 (159)
T ss_pred -----CEEEEEEEE-EEEeeeEEEc---------CCCeEEecceeceEEEEecCCceehhheeee
Confidence 489999887 7778888873 3459999999999999999999999999996
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.27 E-value=3.9e-10 Score=90.64 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=97.8
Q ss_pred EEEEEEeeCce-------eCCCeEEEcCCCCEEEEEeccccCCcC--CccccCCeEEEECCCCCeeEEEEecCC------
Q 031212 17 DLFVSKKYPGL-------TRGDIGFADSSGDVIYRVNRTQHQSKS--NSSQRRKRVVVVDSAGNPLISVYRQDK------ 81 (164)
Q Consensus 17 ~L~v~qk~~s~-------~~~~f~V~D~~G~~vfrVdg~~~~~~~--~~s~~~~~~~l~D~~G~~Llti~~K~~------ 81 (164)
.|.|+|++-.+ ..|.|.|+|.+|+.+|.+.-..-.-.| .++.|+-++.++|+.|+++++|+|...
T Consensus 23 ~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~ 102 (221)
T PF03803_consen 23 QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCP 102 (221)
T ss_pred EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceeccc
Confidence 47888886542 348999999999999988544111122 345667788999999999999999753
Q ss_pred ---CceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcc------cCCceeEEEEC-CeEEEE
Q 031212 82 ---GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGS------PFQKSCTIYRG-NSIIAQ 151 (164)
Q Consensus 82 ---~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~------~~~~s~~I~~~-~~~VA~ 151 (164)
..-+++.+. .++|.+|++++ ...+++|+|+-+++ ..-+.|+|. +.+..|.|++. |..||+
T Consensus 103 ~~~~~~~V~~p~----g~~iG~I~q~~-~~~~~~f~I~d~~~-----~~~~~I~gp~~~~~~~~~~~F~I~~~~~~~vg~ 172 (221)
T PF03803_consen 103 CCLQEMEVESPP----GNLIGSIRQPF-SCCRPNFDIFDANG-----NPIFTIKGPCCCCSCCCDWEFEIKDPNGQEVGS 172 (221)
T ss_pred ccceeEEEecCC----CcEEEEEEEcC-cccceEEEEEECCC-----ceEEEEeCCcceeccccceeeeeecccCcEEEE
Confidence 234443333 36999999886 66789999975543 456889987 45889999994 689999
Q ss_pred EeecCC
Q 031212 152 SHVQAS 157 (164)
Q Consensus 152 v~rk~~ 157 (164)
|+|+++
T Consensus 173 I~k~w~ 178 (221)
T PF03803_consen 173 ITKKWS 178 (221)
T ss_pred EEEecC
Confidence 999985
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=4.6e-06 Score=63.78 Aligned_cols=100 Identities=12% Similarity=0.207 Sum_probs=78.9
Q ss_pred CCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC---CC-----
Q 031212 11 NSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD---KG----- 82 (164)
Q Consensus 11 ~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~---~~----- 82 (164)
|...+..+.|.-+.|++.+ .|+++|+.|..++.++-+.+ ++.+ ++-+-|++|+ ++.+|+|. .+
T Consensus 25 d~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll------~l~~-~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d 95 (159)
T COG4894 25 DRDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLL------SLLP-RYEISDGGGT-VCEVRKKVTFSRDKFEID 95 (159)
T ss_pred CCCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHh------hccc-eeEEEcCCCC-EEEEEEEEEEEeeeEEEc
Confidence 4677899999999888877 79999999999999999988 7855 6699999999 88888885 13
Q ss_pred --ceeEEec----C--CCCCceEEEEEEecccCCCCceEEEEEecC
Q 031212 83 --LWQGFKG----D--DGEEKELIFKVNRTMKTLTRTEFEVFIVDE 120 (164)
Q Consensus 83 --~w~~~~g----~--~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~ 120 (164)
.|+++-. + -.++.+.++.|.|++ ...++.|++.+++.
T Consensus 96 ~~~~eihGNi~d~efkl~dg~~~~aeVsKkw-f~~rdTY~l~vapd 140 (159)
T COG4894 96 GLNWEIHGNIWDDEFKLTDGENVRAEVSKKW-FSWRDTYHLQVAPD 140 (159)
T ss_pred CCCeEEecceeceEEEEecCCceehhheeee-EeccceEEEEEcCc
Confidence 3555431 1 124456899999998 66688999988653
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.86 E-value=0.00019 Score=56.54 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=39.7
Q ss_pred CCCcEEEEEEE-eeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCC----eeEEEEec
Q 031212 12 SPIPVDLFVSK-KYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN----PLISVYRQ 79 (164)
Q Consensus 12 ~~~~~~L~v~q-k~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~----~Llti~~K 79 (164)
......|.|.. +.+++.+ .+.++|++|++++.+.-+.+ +++ .++.++++++. +|++|+++
T Consensus 35 ~~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~------~l~-~~w~i~~~~~~~~~~~i~tvkk~ 99 (187)
T PF04525_consen 35 ENGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLF------SLR-PTWEIYRGGGSEGKKPIFTVKKK 99 (187)
T ss_dssp TTS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE---------------EEEEEETT---GGGEEEEEE--
T ss_pred CCCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeec------ccc-eEEEEEECCCCccCceEEEEEEe
Confidence 45678899999 8888877 99999999999999999988 784 58899999998 59999999
No 6
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.78 E-value=0.0042 Score=49.75 Aligned_cols=79 Identities=10% Similarity=0.177 Sum_probs=55.0
Q ss_pred CCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecCC-----C--ceeEEecCCCCCceEEEEEE
Q 031212 30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDK-----G--LWQGFKGDDGEEKELIFKVN 102 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~~-----~--~w~~~~g~~~~~~~~if~Vk 102 (164)
...+|++..|+++.+|.-... .. ..++.|+|++|+++++|+.... . .++++..+ + +.+.+|+
T Consensus 106 ~~~~V~~p~g~~iG~I~q~~~------~~-~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~~~---~-~~vg~I~ 174 (221)
T PF03803_consen 106 QEMEVESPPGNLIGSIRQPFS------CC-RPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKDPN---G-QEVGSIT 174 (221)
T ss_pred eeEEEecCCCcEEEEEEEcCc------cc-ceEEEEEECCCceEEEEeCCcceeccccceeeeeeccc---C-cEEEEEE
Confidence 467888999999999998643 34 5688999999999999988742 2 34444433 2 6899999
Q ss_pred ecccCCC------CceEEEEEec
Q 031212 103 RTMKTLT------RTEFEVFIVD 119 (164)
Q Consensus 103 k~~~~~~------k~~~~V~l~~ 119 (164)
|++.-+. ...|.|.++.
T Consensus 175 k~w~G~~~e~~t~~d~f~i~Fp~ 197 (221)
T PF03803_consen 175 KKWSGFCRELFTDADNFVIEFPP 197 (221)
T ss_pred EecCCcchhhccccceEEEEcCC
Confidence 9873222 2356666654
No 7
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=95.67 E-value=0.19 Score=42.73 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=80.1
Q ss_pred cEEEEEEEeeCce----eCCCeEEEcCCCCEEEEE-eccccCCcC--CccccCCeEEEECCCCCeeEEEEecCC--Ccee
Q 031212 15 PVDLFVSKKYPGL----TRGDIGFADSSGDVIYRV-NRTQHQSKS--NSSQRRKRVVVVDSAGNPLISVYRQDK--GLWQ 85 (164)
Q Consensus 15 ~~~L~v~qk~~s~----~~~~f~V~D~~G~~vfrV-dg~~~~~~~--~~s~~~~~~~l~D~~G~~Llti~~K~~--~~w~ 85 (164)
.+.....+.+..+ +.|.|.|.|.+|+.+|.+ +.... -+| .++.|+-...++|.-|+++++++|... ..
T Consensus 80 ~~V~q~~E~~ei~tG~et~NRY~v~~~~g~~v~~~~E~S~~-~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~-- 156 (292)
T KOG0621|consen 80 LMVVQQIEPLEIFTGFETANRYVVHDMYGQPLYYAMERSNV-FARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSS-- 156 (292)
T ss_pred eEEEEeeeehhhhccCccCcEEEEEcCCcChhHHHHhhchH-HHHHhhccCCcceeEeecccCcEEEEEecccccccc--
Confidence 3344444443333 348999999999988843 33210 122 445677788999999999999999863 21
Q ss_pred EEecC-------CCCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcc-------cCCceeEEEEC--CeEE
Q 031212 86 GFKGD-------DGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGS-------PFQKSCTIYRG--NSII 149 (164)
Q Consensus 86 ~~~g~-------~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~-------~~~~s~~I~~~--~~~V 149 (164)
.+.+- .....-++..|.+.+ ....++++|.=. +...-|.|+|. +.+..+.|... +.+|
T Consensus 157 ~c~~~~~~~~~v~~p~~~~lG~v~q~~-~~~~~~f~i~~~-----~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~v 230 (292)
T KOG0621|consen 157 ACALCLAQEIEIQSPPMGLLGKVLQTW-GCVNPNFHLWDR-----DGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIV 230 (292)
T ss_pred ccccccccEEEEEcCCCceEEEEEEee-ccccceEEEEcc-----cceeEEEEEcCceeEEEeecCcceeEEEcCCCeEE
Confidence 11110 001123666666654 455667776421 12334667766 33444444443 4889
Q ss_pred EEEeecCCc
Q 031212 150 AQSHVQASA 158 (164)
Q Consensus 150 A~v~rk~~~ 158 (164)
++|+|++..
T Consensus 231 g~I~k~w~g 239 (292)
T KOG0621|consen 231 GSISRKWAG 239 (292)
T ss_pred EEEeecccc
Confidence 999999864
No 8
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=84.09 E-value=5.5 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=28.2
Q ss_pred ccCCeEEEECCCCCeeEEEEecCCCceeEEecCC
Q 031212 58 QRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDD 91 (164)
Q Consensus 58 ~~~~~~~l~D~~G~~Llti~~K~~~~w~~~~g~~ 91 (164)
..++.|.|+|++|+.|+.+.+..-.+|+....++
T Consensus 59 ~~gd~l~L~d~~G~~v~~f~~~~~g~~~g~~~~g 92 (99)
T PF02974_consen 59 PTGDGLVLTDADGSVVAFFYRSGDGRFEGQTPDG 92 (99)
T ss_dssp EETTEEEEE-TTS-EEEEEEEECTTEEEEEECCC
T ss_pred EcCCEEEEECCCCCEEEEEEccCCeeEEeEcCCC
Confidence 4577899999999999999999989999998764
No 9
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=74.32 E-value=5 Score=27.11 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=8.0
Q ss_pred CeEEEcCCCCEEEEEec
Q 031212 31 DIGFADSSGDVIYRVNR 47 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg 47 (164)
...|+|++|++|.+++-
T Consensus 28 ~v~I~d~~G~~V~t~~~ 44 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISL 44 (81)
T ss_dssp EEEEEETTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 34455555555555543
No 10
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=71.77 E-value=7.1 Score=32.76 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=10.3
Q ss_pred CCCeEEEcC-CCCEEEEEeccc
Q 031212 29 RGDIGFADS-SGDVIYRVNRTQ 49 (164)
Q Consensus 29 ~~~f~V~D~-~G~~vfrVdg~~ 49 (164)
.+.|.|+|. +|+++|.+|...
T Consensus 117 ~~~F~V~d~~~g~~lFsad~~~ 138 (264)
T PF04790_consen 117 SNRFEVKDPRDGKTLFSADRPE 138 (264)
T ss_pred cCeEEEEcCCCCceEEEecCCc
Confidence 334555554 455555555443
No 11
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=70.89 E-value=16 Score=31.17 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=36.1
Q ss_pred CCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecCC
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDK 81 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~~ 81 (164)
.-.|.|.|..++.+|+|+|..+ -.+-..-....++++..+|..+..|-||.-
T Consensus 187 ~~~f~i~~~~~~~v~~v~gp~~-~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~ 238 (292)
T KOG0621|consen 187 NPNFHLWDRDGNLVFLVEGPRC-CTFACCDDTVFFPKTTDNGRIVGSISRKWA 238 (292)
T ss_pred cceEEEEcccceeEEEEEcCce-eEEEeecCcceeEEEcCCCeEEEEEeeccc
Confidence 3489999999999999999811 000001112346888899999999998853
No 12
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=69.85 E-value=5.3 Score=33.45 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=34.0
Q ss_pred EEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCC
Q 031212 18 LFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71 (164)
Q Consensus 18 L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~ 71 (164)
|.+--+..-..++.|.|.|.+|.++|.+|..-. ..+.++|.+.-+.|.
T Consensus 127 l~lgp~~ve~~~~~Fev~~~dgk~LFsad~dEv------~vgae~LRv~g~~Ga 174 (292)
T KOG3950|consen 127 LILGPKKVEAQCKRFEVNDVDGKLLFSADEDEV------VVGAEKLRVLGAEGA 174 (292)
T ss_pred EEechHHHhhhhceeEEecCCCcEEEEecccee------EeeeeeeEeccCCcc
Confidence 555444445566799999999999999998866 566777666555554
No 13
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=64.88 E-value=11 Score=27.57 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=9.3
Q ss_pred CCeEEEECCCCCeeEEEEec
Q 031212 60 RKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti~~K 79 (164)
+.++.|.|..+.-...+..+
T Consensus 65 Gd~i~v~~~~~~~~Y~V~~~ 84 (127)
T cd05828 65 GDIITLQTLGGTYTYRVTST 84 (127)
T ss_pred CCEEEEEECCEEEEEEEeeE
Confidence 34555555544444444443
No 14
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=64.48 E-value=22 Score=27.54 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=34.5
Q ss_pred CeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC----C-CceeEEecC
Q 031212 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD----K-GLWQGFKGD 90 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~----~-~~w~~~~g~ 90 (164)
=++|+|++|+++-++.-.....+.. ....-.++|+|.+|+.|+. +|.. + +.|..+-|+
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~-~h~~~~v~v~~~~g~iLL~-~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCL-RHRATYIVVHDGMGKILVQ-RRTETKDFLPGMLDATAGG 73 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCC-ceEEEEEEEECCCCeEEEE-EeCCCCCCCCCcccccCCC
Confidence 3789999999999883221100000 1123366788999988874 4432 1 356666554
No 15
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=63.52 E-value=13 Score=27.12 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=7.9
Q ss_pred CCeEEEECCCCCeeEEE
Q 031212 60 RKRVVVVDSAGNPLISV 76 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti 76 (164)
+.++.|.|..+.--.++
T Consensus 68 Gd~v~v~~~~~~~~Y~V 84 (126)
T cd06166 68 GDEIKVTTKNGTYKYKI 84 (126)
T ss_pred CCEEEEEECCEEEEEEE
Confidence 34555555544444444
No 16
>PF15529 Toxin_49: Putative toxin 49
Probab=63.13 E-value=7.5 Score=27.48 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEeeCceeCCCeEEEcCCCCEEEEEecc
Q 031212 20 VSKKYPGLTRGDIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 20 v~qk~~s~~~~~f~V~D~~G~~vfrVdg~ 48 (164)
++.+- + .-.+|++||++|.+|-||++.
T Consensus 22 ~~~~~-G-~vt~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 22 YRADP-G-RVTSYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred EeccC-C-cccceeEEcCCCcEeEEeecc
Confidence 55444 2 345899999999988777775
No 17
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=62.20 E-value=15 Score=28.84 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=9.5
Q ss_pred CCeEEEECCCCCee-EEEEec
Q 031212 60 RKRVVVVDSAGNPL-ISVYRQ 79 (164)
Q Consensus 60 ~~~~~l~D~~G~~L-lti~~K 79 (164)
+.++.|.|.+|+.+ ..+...
T Consensus 112 GD~I~v~~~~g~~~~Y~V~~~ 132 (174)
T TIGR03784 112 GDVIRLQTPDGQWQSYQVTAT 132 (174)
T ss_pred CCEEEEEECCCeEEEEEEeEE
Confidence 34555555555542 444443
No 18
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=62.20 E-value=21 Score=28.06 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCe
Q 031212 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72 (164)
Q Consensus 12 ~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~ 72 (164)
+..|+.+.-+..+.-| +-.|||++||-+|....... ..++=.+++.++-+-.
T Consensus 76 segpvri~a~~nvpyW---Svsiyds~~nn~fS~ND~ta------~~gkLDlVvatPiqmi 127 (182)
T COG5436 76 SEGPVRIEAKGNVPYW---SVSIYDSNGNNFFSINDRTA------KGGKLDLVVATPIQMI 127 (182)
T ss_pred cCCcEEEEecCCCceE---EEEEEcCCCCceEEeccccc------cCCccceEEecchhhe
Confidence 4567777776666666 45788888888888877654 1222245555555543
No 19
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=59.79 E-value=64 Score=26.61 Aligned_cols=62 Identities=8% Similarity=0.144 Sum_probs=37.8
Q ss_pred CceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCC-C-CCCcceEEEEcccCCceeEEEECC
Q 031212 82 GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDEN-S-EDSASHFTIKGSPFQKSCTIYRGN 146 (164)
Q Consensus 82 ~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~-~-~~~~~~~~i~G~~~~~s~~I~~~~ 146 (164)
+.+..|..+ ++.+.|...||.. ....+.|.|++.... + .....-=+|..||++..|+|||.+
T Consensus 25 p~y~l~l~~--~~~kfLLaArK~~-~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT~F~iyD~g 88 (246)
T PF01167_consen 25 PGYYLYLEG--ENGKFLLAARKRK-RSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGTEFTIYDNG 88 (246)
T ss_dssp -EEEEEEES--TTSEEEEEEEEEC-SSSSEEEEEESSHHHHCTT---ESEEEEE-TTSSEEEEEESS
T ss_pred cEeEecccc--CCCcEEEeeeecc-cCCCcceEEecCCCccccCCCceeeeeccccceeEEEEECCC
Confidence 455666643 2236788887764 333667888875431 1 112233478999999999999985
No 20
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=58.82 E-value=21 Score=23.56 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=26.5
Q ss_pred eEEEcCCCCEEEE-EeccccCCcCCccccCCe----EEEECCCCCeeEEEE
Q 031212 32 IGFADSSGDVIYR-VNRTQHQSKSNSSQRRKR----VVVVDSAGNPLISVY 77 (164)
Q Consensus 32 f~V~D~~G~~vfr-Vdg~~~~~~~~~s~~~~~----~~l~D~~G~~Llti~ 77 (164)
=.|.|.+|++|-| |+|-.- .+.+++ =-+.|.+|+.|.+..
T Consensus 13 G~V~d~~G~~vG~vveGd~k------~L~G~~vd~~G~I~d~~G~viGkae 57 (64)
T PF12396_consen 13 GNVVDDDGNVVGRVVEGDPK------KLVGKKVDEDGDILDKDGNVIGKAE 57 (64)
T ss_pred CeEECCCCCEEEEEecCCHH------HhcCCcCCCCCCEECCCCCEEEEEE
Confidence 3799999999999 566321 122222 157888888887664
No 21
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=58.50 E-value=28 Score=26.25 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=35.6
Q ss_pred eEEEcCCCCEEEEEeccccCCcCCccc-cCCeEEEECCCCCeeEEEEecC---C-CceeEE
Q 031212 32 IGFADSSGDVIYRVNRTQHQSKSNSSQ-RRKRVVVVDSAGNPLISVYRQD---K-GLWQGF 87 (164)
Q Consensus 32 f~V~D~~G~~vfrVdg~~~~~~~~~s~-~~~~~~l~D~~G~~Llti~~K~---~-~~w~~~ 87 (164)
+.|+|++|+++-++.-.... -+.|-. +.--++|+|.+|+.|+.-|... + +.|..-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~-~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~ 60 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVH-LQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNS 60 (158)
T ss_pred CEEECCCCCEeeeeeHHHhh-hcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCcccc
Confidence 36899999999998876540 000111 1124789999999888654432 2 688854
No 22
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=54.81 E-value=41 Score=22.95 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=22.4
Q ss_pred eEEEcCCCC------EEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEE
Q 031212 32 IGFADSSGD------VIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVY 77 (164)
Q Consensus 32 f~V~D~~G~------~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~ 77 (164)
.+|.|++|+ +.|.+++.... .+.... ...|.+|..++.|+
T Consensus 24 v~v~D~~Gnpv~~~~V~f~~~~~~~~-----~~~~~~-~~Td~~G~a~~~l~ 69 (92)
T smart00634 24 ATVTDANGNPVAGQEVTFTTPSGGAL-----TLSKGT-ATTDANGIATVTLT 69 (92)
T ss_pred EEEECCCCCCcCCCEEEEEECCCcee-----eccCCe-eeeCCCCEEEEEEE
Confidence 456688877 44666654310 111223 46677777777776
No 23
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=54.70 E-value=56 Score=24.96 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=35.9
Q ss_pred eeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEE----EECCC--CCeeEEEEecC---C-CceeEEecC
Q 031212 27 LTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVV----VVDSA--GNPLISVYRQD---K-GLWQGFKGD 90 (164)
Q Consensus 27 ~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~----l~D~~--G~~Llti~~K~---~-~~w~~~~g~ 90 (164)
|.+.-|.|+|++|+++..++-... -+.|-. .+-+. +.|.+ |+.+++-|-+. + +.|....++
T Consensus 2 ~~~E~~~v~d~~~~~~~~~~r~~~--~~~g~~-h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G 72 (180)
T cd03676 2 WRNELYAVYGPFGEPLFEIERAAS--RLFGLV-TYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAG 72 (180)
T ss_pred CcCcceeeECCCCCEeEEEEeccc--ccCCce-EEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeeccc
Confidence 445678999999999988765433 012222 22334 34766 55555554432 2 688766553
No 24
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=52.23 E-value=22 Score=29.57 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=29.5
Q ss_pred eCCC-eEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 28 TRGD-IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 28 ~~~~-f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
.|++ |.|.+.+|..+|.=+|.+ .+.... .|.+++|.+|+.
T Consensus 98 ~G~GFF~V~~~~G~~~YTR~G~F-------~~d~~G-~Lvt~~G~~vl~ 138 (264)
T PRK12816 98 EGEGFFKILMPDGTYAYTRDGSF-------KIDANG-QLVTSNGYRLLP 138 (264)
T ss_pred CCCcEEEEEcCCCCeEEeeCCCe-------eECCCC-CEECCCCCEecc
Confidence 4444 477778898888888875 354555 799999999985
No 25
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=51.15 E-value=3.2 Score=28.56 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=18.3
Q ss_pred CCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeE
Q 031212 30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Ll 74 (164)
+-|.|+|.+|.++..-....+ .+..-.-+.|++|.+++
T Consensus 57 gY~fi~d~~g~~l~hp~~p~~-------~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 57 GYFFIYDMDGVVLAHPSNPEL-------EGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp B--EEE-TTSBEEEESS-GGG-------TT-B-TT-B-TT--BHH
T ss_pred CeEEEEeCCCeEEEcCCCccc-------CCcccccCCCCCCCEEe
Confidence 458899999988776543333 22333357899998874
No 26
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=51.15 E-value=12 Score=24.05 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=12.5
Q ss_pred CCeEEEcCCCCEEEEEeccc
Q 031212 30 GDIGFADSSGDVIYRVNRTQ 49 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~ 49 (164)
-.|.+||+||++| ||.-..
T Consensus 10 s~F~FYDen~~lV-rv~vrD 28 (54)
T PF12142_consen 10 SSFLFYDENGQLV-RVKVRD 28 (54)
T ss_dssp -EEEEE-TTS-EE-EEEGGG
T ss_pred CeeEEECCCCCEE-EEEhhh
Confidence 3799999999987 666554
No 27
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=50.38 E-value=15 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=26.7
Q ss_pred cccccCCCCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEecc
Q 031212 4 SGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 4 v~~~~c~~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~ 48 (164)
=+++|| -+.|....-...+..+||.|-|-+.+-=.-++|.
T Consensus 6 nSd~y~-----VV~~~~~~~~~~l~~gGyEIVDK~~~rEifi~G~ 45 (85)
T PF12091_consen 6 NSDNYC-----VVEFPPDAGHPALARGGYEIVDKNARREIFIDGS 45 (85)
T ss_pred cCCceE-----EEEecCCCCccchhcCCcEEeecCCCceEEeCcH
Confidence 368888 4555554445667677999999765555556765
No 28
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=50.17 E-value=36 Score=28.13 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=29.0
Q ss_pred eCCC-eEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 28 TRGD-IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 28 ~~~~-f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
.|++ |.|.+.+|+.+|.=+|.+. +...- .|.+++|.+|+.
T Consensus 98 ~G~GfF~V~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl~ 138 (262)
T PRK12691 98 QGRGYFQIQLPDGETAYTRAGAFN-------RSADG-QIVTSDGYPVQP 138 (262)
T ss_pred cCCcEEEEEcCCCCEEEeeCCCee-------ECCCC-CEECCCCCEeEe
Confidence 3434 4666778888888888753 54555 799999999985
No 29
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=48.73 E-value=31 Score=26.03 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=32.8
Q ss_pred eEEEcCCCCEEEEEeccccCCcCCccc-cCC-eEEEECCCCCeeEEEEecC---C-CceeEE
Q 031212 32 IGFADSSGDVIYRVNRTQHQSKSNSSQ-RRK-RVVVVDSAGNPLISVYRQD---K-GLWQGF 87 (164)
Q Consensus 32 f~V~D~~G~~vfrVdg~~~~~~~~~s~-~~~-~~~l~D~~G~~Llti~~K~---~-~~w~~~ 87 (164)
..|+|++|+++-+..-... -+.+.. |.- -++|.|.+|+.|+.-|... + +.|..-
T Consensus 4 ~~~~d~~~~~~g~~~r~~~--~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~ 63 (165)
T cd02885 4 VILVDEDDNPIGTAEKLEA--HLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNT 63 (165)
T ss_pred EEEECCCCCCccccCHHHH--hhcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCccccc
Confidence 4799999999997665533 000111 111 3568999999888654432 2 568764
No 30
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=48.43 E-value=26 Score=28.90 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=28.7
Q ss_pred eCCC-eEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 28 TRGD-IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 28 ~~~~-f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
.|++ |.|.+.+|+.+|.=+|.+ .+...- .|.+++|.+|+.
T Consensus 96 ~G~GfF~V~~~~g~~~yTR~G~F-------~~d~~G-~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 96 EGEGFFQVLMPDGTTAYTRDGAF-------KINAEG-QLVTSNGYPLQP 136 (259)
T ss_pred cCCcEEEEEcCCCCeEEeeCCce-------EECCCC-CEECCCCCEecC
Confidence 3444 466677888888877764 355555 788999999985
No 31
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=48.16 E-value=81 Score=21.56 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=6.2
Q ss_pred CCeEEEECCCCCee
Q 031212 60 RKRVVVVDSAGNPL 73 (164)
Q Consensus 60 ~~~~~l~D~~G~~L 73 (164)
.+.|.++|.+|+|+
T Consensus 70 ~~~L~~Ld~~G~~i 83 (87)
T PF04170_consen 70 ENSLEMLDQDGNPI 83 (87)
T ss_dssp TTEEEEE-TTS-B-
T ss_pred CCEEEEECCCCCcC
Confidence 34556666666654
No 32
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=48.05 E-value=28 Score=28.79 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=28.9
Q ss_pred eCCCe-EEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 28 TRGDI-GFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 28 ~~~~f-~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
.|++| .|.+.+|..+|.=+|.+ .+.... .|.+++|.+|+.
T Consensus 98 ~G~GfF~V~~~~G~~~yTR~G~F-------~~d~~G-~Lvt~~G~~Vl~ 138 (260)
T PRK12694 98 NGQGFFQVLMPDGTTAYTRDGSF-------QTNAQG-QLVTSSGYPLQP 138 (260)
T ss_pred cCCcEEEEEcCCCCeEEeeCCCc-------eECCCC-CEECCCCCEecc
Confidence 44444 67678888888878774 354555 688999999985
No 33
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=47.40 E-value=26 Score=28.58 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=12.8
Q ss_pred CeEEEECCCCCeeEEEEe
Q 031212 61 KRVVVVDSAGNPLISVYR 78 (164)
Q Consensus 61 ~~~~l~D~~G~~Llti~~ 78 (164)
-.+.|+|++|+.+-++.-
T Consensus 128 vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 128 VTVTITDSAGQVVRTIDL 145 (225)
T ss_pred EEEEEEcCCCCEEEEEec
Confidence 367788888888866644
No 34
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=46.41 E-value=57 Score=25.10 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=6.4
Q ss_pred eEEEcCCCCEEEEEec
Q 031212 32 IGFADSSGDVIYRVNR 47 (164)
Q Consensus 32 f~V~D~~G~~vfrVdg 47 (164)
|.|+|.+|+.+-+|.+
T Consensus 108 ~~V~d~~g~~lG~V~~ 123 (172)
T PRK00122 108 LEVVDEDGEELGKVTD 123 (172)
T ss_pred cEEEeCCCcEEEEEEE
Confidence 3344444444333333
No 35
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=45.29 E-value=37 Score=27.94 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=28.7
Q ss_pred eCCCe-EEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 28 TRGDI-GFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 28 ~~~~f-~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
.|++| .|.+.+|++.|.=+|.+. +...- .|.+++|.+|+.
T Consensus 98 ~G~GfF~v~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl~ 138 (261)
T PRK12693 98 EGQGFFQVQLPDGTIAYTRDGSFK-------LDQDG-QLVTSGGYPLQP 138 (261)
T ss_pred CCCcEEEEEcCCCCeEEeeCCCee-------ECCCC-CEECCCCCEEee
Confidence 44444 566778887888777743 54545 789999999995
No 36
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=45.09 E-value=50 Score=18.86 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=19.7
Q ss_pred EcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 35 ADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 35 ~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
||++|+++=.++.... ..+ .-+|+.|+++-.
T Consensus 1 YD~~G~l~~~~d~~G~---------~~~-y~YD~~g~l~~~ 31 (38)
T PF05593_consen 1 YDANGRLTSVTDPDGR---------TTR-YTYDAAGRLTSV 31 (38)
T ss_pred CCCCCCEEEEEcCCCC---------EEE-EEECCCCCEEEE
Confidence 5788888877765432 113 677888875543
No 37
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=44.74 E-value=49 Score=25.27 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=7.3
Q ss_pred EECCCCCeeEEEEe
Q 031212 65 VVDSAGNPLISVYR 78 (164)
Q Consensus 65 l~D~~G~~Llti~~ 78 (164)
++|.+|+.|.+|..
T Consensus 105 V~d~~~~~lG~V~~ 118 (165)
T TIGR02273 105 VVTEEGEELGKVVE 118 (165)
T ss_pred EEcCCCcEEEEEEE
Confidence 44555555555544
No 38
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=44.42 E-value=35 Score=27.92 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=13.9
Q ss_pred CeEEEECCCCCeeEEEEe
Q 031212 61 KRVVVVDSAGNPLISVYR 78 (164)
Q Consensus 61 ~~~~l~D~~G~~Llti~~ 78 (164)
=++.|+|++|+.+-++.-
T Consensus 131 v~v~I~D~~G~vV~t~~l 148 (230)
T PRK12633 131 VTVKVLDPSGAVVRTMEL 148 (230)
T ss_pred EEEEEEeCCCCEEEEEec
Confidence 367888888888877753
No 39
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=44.08 E-value=40 Score=24.91 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=11.1
Q ss_pred CCeEEEECCCCCeeEEEEec
Q 031212 60 RKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti~~K 79 (164)
+.++.|.|..|.--.+|-..
T Consensus 69 Gd~i~v~~~~~~~~Y~V~~~ 88 (137)
T cd05830 69 GDKIVVETADGWYTYVVRSS 88 (137)
T ss_pred CCEEEEEECCeEEEEEEeEE
Confidence 44666666666555555444
No 40
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=43.66 E-value=43 Score=22.59 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=23.8
Q ss_pred EEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEE
Q 031212 34 FADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISV 76 (164)
Q Consensus 34 V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti 76 (164)
-+|.+|. |+|++.+. .....++.|.=.+|..+.--
T Consensus 15 WtD~tG~--f~VeA~fv------~~~dgkV~L~k~nG~~i~VP 49 (70)
T PF03983_consen 15 WTDRTGK--FKVEAEFV------GVNDGKVHLHKTNGVKIAVP 49 (70)
T ss_dssp EEBSSS----EEEEEEE------EEETTEEEEE-TTS-EEEEE
T ss_pred EEeCCCC--EEEEEEEE------EeeCCEEEEEecCCeEEEeE
Confidence 3566664 69999988 67788999999999776443
No 41
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=43.53 E-value=44 Score=27.20 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=13.0
Q ss_pred eEEEECCCCCeeEEEEe
Q 031212 62 RVVVVDSAGNPLISVYR 78 (164)
Q Consensus 62 ~~~l~D~~G~~Llti~~ 78 (164)
.+.|+|++|+.+-++.-
T Consensus 125 ~i~I~d~~G~~V~t~~l 141 (221)
T PRK12634 125 NFEITDANGAFVKQISV 141 (221)
T ss_pred EEEEEcCCCCEEEEEec
Confidence 67888888888877754
No 42
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=42.63 E-value=76 Score=26.31 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=39.7
Q ss_pred CCeEEEcCCCCEEEEEeccccCC---c-CCccc-cCCeEEEECCCCCeeEEEEecC---C-CceeEEecC
Q 031212 30 GDIGFADSSGDVIYRVNRTQHQS---K-SNSSQ-RRKRVVVVDSAGNPLISVYRQD---K-GLWQGFKGD 90 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~~~~---~-~~~s~-~~~~~~l~D~~G~~Llti~~K~---~-~~w~~~~g~ 90 (164)
..+.|+|++++++-...-...-. . +.|-. +.-.+.|+|.+|+.|++-|..- + +.|..-.++
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~G 92 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCS 92 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCC
Confidence 48899999999999886532100 0 00111 1226789999999999888753 2 588766543
No 43
>PHA00458 single-stranded DNA-binding protein
Probab=42.51 E-value=29 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=27.5
Q ss_pred EEcCCCCEEEEEeccccCCcC-CccccCCeEEEECCCCCeeE
Q 031212 34 FADSSGDVIYRVNRTQHQSKS-NSSQRRKRVVVVDSAGNPLI 74 (164)
Q Consensus 34 V~D~~G~~vfrVdg~~~~~~~-~~s~~~~~~~l~D~~G~~Ll 74 (164)
..+..|++.|+.+.|.....+ -|......+.|+|+.|++|-
T Consensus 98 ~eNedG~v~F~FK~~aS~~dkktGe~~~i~l~v~DskGK~l~ 139 (233)
T PHA00458 98 FDNGDGTVTFKFKCYASYKDKKTGENKPIVLRVVDSKGKRIE 139 (233)
T ss_pred ccCCCceEEEEEEeeeecccccCCcccccceeEEcCCCcCcC
Confidence 455789999999998642111 12222334789999998875
No 44
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=40.66 E-value=20 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=10.4
Q ss_pred CeEEEcCCCCEEEEEe
Q 031212 31 DIGFADSSGDVIYRVN 46 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVd 46 (164)
+|.|+|.+|+.|||=.
T Consensus 27 D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWS 42 (82)
T ss_dssp EEEEE-TT--EEEETT
T ss_pred EEEEECCCCCEEEEec
Confidence 6888899999999843
No 45
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=40.14 E-value=54 Score=23.61 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=11.8
Q ss_pred CCeEEEECCCCCeeEEEEec
Q 031212 60 RKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti~~K 79 (164)
+.++.|.|..+.-..+|-..
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~~ 87 (128)
T cd00004 68 GDKIYLTDGGKTYVYKVTSI 87 (128)
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 44666666655555555544
No 46
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=39.82 E-value=72 Score=24.59 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=4.4
Q ss_pred CCCCCeeEEEE
Q 031212 67 DSAGNPLISVY 77 (164)
Q Consensus 67 D~~G~~Llti~ 77 (164)
|.+|.+|.+|.
T Consensus 112 d~~g~~lG~V~ 122 (169)
T PRK14591 112 NINNDSFGVVV 122 (169)
T ss_pred eCCCCEEEEEE
Confidence 33444444443
No 47
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=39.56 E-value=77 Score=24.23 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=7.0
Q ss_pred eEEEcCCCCEEEEEec
Q 031212 32 IGFADSSGDVIYRVNR 47 (164)
Q Consensus 32 f~V~D~~G~~vfrVdg 47 (164)
|.|+|++|+.+-+|..
T Consensus 88 ~~V~d~~g~~lG~V~~ 103 (161)
T PRK13828 88 LAAVDTGGALLGRVKA 103 (161)
T ss_pred CEEEeCCCCEEEEEEE
Confidence 4444444444444443
No 48
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=39.52 E-value=79 Score=22.23 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=7.9
Q ss_pred CCeEEEcCCCCEEEE
Q 031212 30 GDIGFADSSGDVIYR 44 (164)
Q Consensus 30 ~~f~V~D~~G~~vfr 44 (164)
+.+.++|.+|.++..
T Consensus 64 GnLvl~~~~g~~vW~ 78 (114)
T smart00108 64 GNLVLYDGDGRVVWS 78 (114)
T ss_pred CCEEEEeCCCCEEEE
Confidence 455555555555443
No 49
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=39.27 E-value=62 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCeeEEEEecCCCc
Q 031212 60 RKRVVVVDSAGNPLISVYRQDKGL 83 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti~~K~~~~ 83 (164)
+-.++|.|++|+.=.+|++|.+..
T Consensus 20 D~~v~l~DpTG~i~~tiH~~v~~~ 43 (86)
T PF15072_consen 20 DAFVVLKDPTGEIRGTIHRKVLEE 43 (86)
T ss_pred CeEEEEECCCCcEEEEEeHHHHhh
Confidence 557899999999999999998765
No 50
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=38.15 E-value=92 Score=22.00 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=7.4
Q ss_pred CCeEEEcCCCCEEE
Q 031212 30 GDIGFADSSGDVIY 43 (164)
Q Consensus 30 ~~f~V~D~~G~~vf 43 (164)
+.+.++|.+|.++-
T Consensus 65 GnLvl~~~~g~~vW 78 (116)
T cd00028 65 GNLVIYDGSGTVVW 78 (116)
T ss_pred CCeEEEcCCCcEEE
Confidence 34555565555543
No 51
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=38.15 E-value=28 Score=20.38 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=7.4
Q ss_pred cCCCCEEEEEe
Q 031212 36 DSSGDVIYRVN 46 (164)
Q Consensus 36 D~~G~~vfrVd 46 (164)
++||+.|+|.|
T Consensus 27 NeNGntV~RCd 37 (37)
T PF06357_consen 27 NENGNTVKRCD 37 (37)
T ss_dssp -SSS-EEEEE-
T ss_pred ccCCceeeccC
Confidence 78999999976
No 52
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=37.70 E-value=46 Score=21.79 Aligned_cols=17 Identities=47% Similarity=0.425 Sum_probs=15.1
Q ss_pred eEEEECCCCCeeEEEEe
Q 031212 62 RVVVVDSAGNPLISVYR 78 (164)
Q Consensus 62 ~~~l~D~~G~~Llti~~ 78 (164)
+|.|+|.+|+.|.+++=
T Consensus 47 rV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 47 RVEVVDEDGQVLGSLRF 63 (66)
T ss_pred EEEEEcCCCCEEEEEEE
Confidence 89999999999998763
No 53
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=37.42 E-value=58 Score=23.54 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=9.4
Q ss_pred CCeEEEECCCCCeeEEEEe
Q 031212 60 RKRVVVVDSAGNPLISVYR 78 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti~~ 78 (164)
+.++.|.+..+.--..|..
T Consensus 67 Gd~I~l~~~~~~~~Y~V~~ 85 (127)
T cd06165 67 GDKIYLTDKDNVYEYKVTS 85 (127)
T ss_pred CCEEEEEECCEEEEEEEee
Confidence 4455555555544444443
No 54
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=35.93 E-value=98 Score=24.00 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.0
Q ss_pred eEEEcCCCCE
Q 031212 32 IGFADSSGDV 41 (164)
Q Consensus 32 f~V~D~~G~~ 41 (164)
|.|+|++|+.
T Consensus 105 ~~V~d~~g~~ 114 (171)
T PRK14590 105 LQAIDETGKP 114 (171)
T ss_pred cEEEeCCCCE
Confidence 3444444433
No 55
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=35.75 E-value=41 Score=27.53 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=10.3
Q ss_pred eEEEECCCCCeeEEEE
Q 031212 62 RVVVVDSAGNPLISVY 77 (164)
Q Consensus 62 ~~~l~D~~G~~Llti~ 77 (164)
.+.|+|++|+.+-++.
T Consensus 127 ~v~I~D~~G~vV~t~~ 142 (223)
T PRK12813 127 ELVVRDAAGAEVARET 142 (223)
T ss_pred EEEEEcCCCCEEEEEe
Confidence 5666777777765553
No 56
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=35.73 E-value=31 Score=26.22 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=26.6
Q ss_pred EEEEcccCCceeEEEECCeEEEEEeecCCcchhh
Q 031212 129 FTIKGSPFQKSCTIYRGNSIIAQSHVQASADLCE 162 (164)
Q Consensus 129 ~~i~G~~~~~s~~I~~~~~~VA~v~rk~~~~~~~ 162 (164)
|..+|.+|.|.|.|+.+++.+..|.-.+++.|..
T Consensus 114 f~~~~~~~~R~Y~i~~~~~pl~~I~E~F~~~L~~ 147 (149)
T PF01947_consen 114 FGCEGPFWSRTYRIIHNGKPLMVITEVFPPALER 147 (149)
T ss_dssp HTSS-EEEEEEEEEEETTEEEEEEEEEEEG--GG
T ss_pred hCCCCCcCccEEEEEECCEEEEEEEEECCccccc
Confidence 3357788999999999999999999999987753
No 57
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=35.71 E-value=12 Score=29.54 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred ccccCCCCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC
Q 031212 5 GPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD 80 (164)
Q Consensus 5 ~~~~c~~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~ 80 (164)
.|.|- ....+.-.||.|---++. .| ++..|+-...- +....+ ..+|--|+||+||+.+-
T Consensus 95 RPIY~--nE~dvk~~IksKenk~NE-AY--------VaiyInq~dIl-----~~~~dk-~~~Dk~GkpLltLkdra 153 (179)
T PF09475_consen 95 RPIYA--NEEDVKAAIKSKENKLNE-AY--------VAIYINQSDIL-----SLSPDK-IPTDKLGKPLLTLKDRA 153 (179)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCCcC--CHHHHHHHHHhhhcccce-eE--------EEEEEchHhcc-----cCCccc-ccccccCCcccccchhh
Confidence 46665 556667777777555555 33 33444444321 566777 99999999999999985
No 58
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=35.61 E-value=66 Score=26.96 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred eEEEcCCCCEEEEEeccccCCcCCccccCCeEEE--ECCCCCee
Q 031212 32 IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVV--VDSAGNPL 73 (164)
Q Consensus 32 f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l--~D~~G~~L 73 (164)
.+|+|++|++|..++-... ..+.+.|.. .|.+|+++
T Consensus 145 v~I~D~~G~~V~t~~lg~~------~aG~~~f~WDG~d~~G~~~ 182 (259)
T PRK12812 145 LEIYDSNNKLVEKIDFKEI------SQGLFTMEWDGRDNDGVYA 182 (259)
T ss_pred EEEEeCCCCEEEEEecCCC------CCcceeEEECCCCCCCCcC
No 59
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=35.38 E-value=97 Score=23.74 Aligned_cols=13 Identities=0% Similarity=-0.258 Sum_probs=5.4
Q ss_pred ECCCCCeeEEEEe
Q 031212 66 VDSAGNPLISVYR 78 (164)
Q Consensus 66 ~D~~G~~Llti~~ 78 (164)
+|.+|+.|.+|..
T Consensus 103 ~~~~g~~lG~V~~ 115 (165)
T PRK14592 103 KLEDNTIYGYIKK 115 (165)
T ss_pred EcCCCCEEEEEEE
Confidence 3444444444433
No 60
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=33.59 E-value=34 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=17.7
Q ss_pred EEEeeCceeCCCeEEEcCCCCEEEEEec
Q 031212 20 VSKKYPGLTRGDIGFADSSGDVIYRVNR 47 (164)
Q Consensus 20 v~qk~~s~~~~~f~V~D~~G~~vfrVdg 47 (164)
||.. |..+.|+|-|||..|+++|.+.=
T Consensus 102 vW~~-L~G~kdD~~iyDRCGrL~~~i~~ 128 (238)
T PF04592_consen 102 VWEL-LNGSKDDFLIYDRCGRLTYHIPL 128 (238)
T ss_pred HHHH-hCCCcCcEEEEeccCcEEEEecC
Confidence 4443 33444688888888888887753
No 61
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=33.58 E-value=63 Score=15.58 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=12.5
Q ss_pred CCeEEEcCCCCEEEEE
Q 031212 30 GDIGFADSSGDVIYRV 45 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrV 45 (164)
|.+..++++|++....
T Consensus 3 G~~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 3 GEWKFYYENGKLKSEG 18 (22)
T ss_pred ceEEEEeCCCCEEEEE
Confidence 4678889999987764
No 62
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=33.54 E-value=39 Score=23.13 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=15.8
Q ss_pred CeEEEcCCCCEEEEEeccc
Q 031212 31 DIGFADSSGDVIYRVNRTQ 49 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~ 49 (164)
.+-++|.+|++++++.|+.
T Consensus 85 t~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp EEEECTTTSCEEEEEESS-
T ss_pred EEEEEcCCCCEEEEecCCC
Confidence 5677899999999999984
No 63
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=33.50 E-value=82 Score=23.19 Aligned_cols=20 Identities=5% Similarity=-0.169 Sum_probs=11.0
Q ss_pred CCeEEEECCCCCeeEEEEec
Q 031212 60 RKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti~~K 79 (164)
+..+.|.+..+.-...|-..
T Consensus 67 GD~i~v~~~~~~~~Y~V~~~ 86 (136)
T TIGR01076 67 GDMLYLHVGNEVLTYQVTST 86 (136)
T ss_pred CCEEEEEECCcEEEEEEEEE
Confidence 44666666665555555443
No 64
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=32.80 E-value=1.1e+02 Score=22.44 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=26.8
Q ss_pred EEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEe
Q 031212 21 SKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYR 78 (164)
Q Consensus 21 ~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~ 78 (164)
-.+.+.++.++|.+|+.+ .+.-|..... ...|+|++|..+|-+-.
T Consensus 61 i~QPi~iN~gg~~~y~gq--~a~~vt~~~h-----------SMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 61 IAQPIIINKGGFPVYNGQ--IAKFVTVPGH-----------SMAVYDANGQQQFYFPN 105 (114)
T ss_dssp E-SSEEE-TTS-EEETTE--E--EEESSSE-----------EEEEE-TTS-EEEEESE
T ss_pred ccCCEEEccCCceEEccc--eeEEEEccCc-----------eEEEEeCCCcEEEeecc
Confidence 345677878899999754 6666655543 34899999999987643
No 65
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=32.33 E-value=2e+02 Score=24.25 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred EEEEEEeeCc--eeCCCeEEEcCCCCEEEEEeccc-cCC---cCCccccCCeEEEECCCCCeeEEEEec
Q 031212 17 DLFVSKKYPG--LTRGDIGFADSSGDVIYRVNRTQ-HQS---KSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 17 ~L~v~qk~~s--~~~~~f~V~D~~G~~vfrVdg~~-~~~---~~~~s~~~~~~~l~D~~G~~Llti~~K 79 (164)
-|+.|+-... +.-+.+.+.|.+.+++++|.... +.+ .......-|+ ..+.++|+.|+++...
T Consensus 10 ~L~~w~g~~~~g~g~G~~~~lD~~y~~i~~v~~~~~~~~~~~~~~~~~d~He-~~it~~gt~lvt~~~~ 77 (299)
T PF14269_consen 10 VLTFWQGDGTGGYGYGSYVILDSSYEVIWNVSAGNDFGTPDGEPGSYADHHE-FEITPDGTALVTAYNP 77 (299)
T ss_pred EEEEEECCCCCccccceEEEECCCCcEEEEEECCCcccccccccCccCCccc-eEEcCCCcEEEEEccc
Confidence 4666776532 33345889999999999998875 000 0011233567 4458999999988765
No 66
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=32.19 E-value=53 Score=26.40 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=32.2
Q ss_pred eeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeE
Q 031212 23 KYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74 (164)
Q Consensus 23 k~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Ll 74 (164)
......+|++.+.+..+..+.+-.|... +.+....++++|.+|+++-
T Consensus 22 Gl~~g~~GNiS~R~~~~~~lITPsg~~~-----~~l~~~Div~vd~~G~~i~ 68 (217)
T PRK05874 22 GLVEGTAGNISARRSDGNVVITPSSVDY-----AEMLLHDLVLVDAGGAVLH 68 (217)
T ss_pred CCCCCCCCeEEEEcCCCCEEEeCCCCCh-----hhCCHHHEEEEcCCCCEec
Confidence 3444556788888776665555444433 3577889999999998873
No 67
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=32.17 E-value=70 Score=24.66 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=29.6
Q ss_pred CeEEEcCCCCEEEEEeccccCCcCCcccc-CCeEEEECCCCCeeEEEE
Q 031212 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQR-RKRVVVVDSAGNPLISVY 77 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~~~~~~~~s~~-~~~~~l~D~~G~~Llti~ 77 (164)
-++|+|+||+++-++.-.... .+.+-.+ .=.+++.|.+|+.|+.=|
T Consensus 7 ~~~~vd~~~~~~g~~~r~~~~-~~~~~~h~av~v~i~~~~g~vLL~rR 53 (184)
T PRK03759 7 LVVLLDEQGVPTGTAEKAAAH-TADTPLHLAFSCYLFDADGRLLVTRR 53 (184)
T ss_pred eEEEECCCCCCcccccHHHHH-hcCCCeeeEEEEEEEcCCCeEEEEEc
Confidence 579999999999988776541 0001111 114568899998777643
No 68
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=32.04 E-value=86 Score=23.42 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=10.0
Q ss_pred CCeEEEECCCCC-eeEEEEe
Q 031212 60 RKRVVVVDSAGN-PLISVYR 78 (164)
Q Consensus 60 ~~~~~l~D~~G~-~Llti~~ 78 (164)
+.++.|.++.|+ -...+.+
T Consensus 76 GD~I~v~~~~g~~~~Y~V~~ 95 (144)
T cd05829 76 GDKVEVTRADGQTATFRVDR 95 (144)
T ss_pred CCEEEEEECCCCEEEEEEeE
Confidence 456666665554 4444444
No 69
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=29.46 E-value=1.6e+02 Score=23.22 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=30.0
Q ss_pred CeEEEcCCCCEEEEEeccccC---CcCCccccCCeEEEECCCCCeeEEEEec
Q 031212 31 DIGFADSSGDVIYRVNRTQHQ---SKSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~~~---~~~~~s~~~~~~~l~D~~G~~Llti~~K 79 (164)
.-++||++|.+-|++.+.-+. ..-.--+-.-.+.+++..|.+.++++-+
T Consensus 49 ~~~~yd~~G~l~y~l~a~~~~Hy~~~~~t~f~~P~l~~y~~~~~~~W~v~A~ 100 (192)
T PRK10893 49 DTVVYNPEGALSYKLVAQHVEYYSDQAVSWFTQPVLTTFDKNKVPTWSVRAD 100 (192)
T ss_pred EEEEECCCCCEEEEEEecceEEcCCCCCEEEeCCeEEEECCCCcceEEEEeC
Confidence 447889999999999996430 0000012233566777777767666554
No 70
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=29.43 E-value=83 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=27.7
Q ss_pred CeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
=|.|.+.+|..+|.=+|.+. +...- .|.+++|.+|+.
T Consensus 98 fF~V~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl~ 134 (260)
T PRK12817 98 FFRVIMADGTYAYTRAGNFN-------IDSNG-MLVDDNGNRLEI 134 (260)
T ss_pred EEEEEcCCCCeEEEeCCcee-------ECCCC-CEEcCCCCEEEe
Confidence 45677788888888888753 54555 688899999885
No 71
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=28.89 E-value=2e+02 Score=20.05 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.1
Q ss_pred CceeCCCeEEEcCCCCEEEEEecc
Q 031212 25 PGLTRGDIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 25 ~s~~~~~f~V~D~~G~~vfrVdg~ 48 (164)
+...+++..++|.+|+.|-+....
T Consensus 57 W~~~gd~l~L~d~~G~~v~~f~~~ 80 (99)
T PF02974_consen 57 WRPTGDGLVLTDADGSVVAFFYRS 80 (99)
T ss_dssp EEEETTEEEEE-TTS-EEEEEEEE
T ss_pred eeEcCCEEEEECCCCCEEEEEEcc
Confidence 556789999999999999877654
No 72
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=28.81 E-value=51 Score=20.53 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=11.6
Q ss_pred CeEEEcCCCCEEEEEe
Q 031212 31 DIGFADSSGDVIYRVN 46 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVd 46 (164)
=|.-.|++|+++|.=.
T Consensus 15 vYk~~D~~G~v~ysd~ 30 (60)
T PF13511_consen 15 VYKWVDENGVVHYSDT 30 (60)
T ss_pred EEEEECCCCCEEECcc
Confidence 4555699999998644
No 73
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=28.72 E-value=85 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=26.6
Q ss_pred CeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
=|.|.+.+|+..|.=+|.+. +...- .|.+++|.+|+-
T Consensus 102 FF~V~~~~G~~~YTR~G~F~-------~d~~G-~Lvt~~G~~vlg 138 (256)
T PRK12818 102 FFTVERNAGNNYYTRDGHFH-------VDTQG-YLVNDSGYYVLG 138 (256)
T ss_pred eEEEEcCCCCeEEeeCCCee-------ECCCC-CEEcCCCCEEec
Confidence 46676778887788777753 44445 688889988884
No 74
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=28.27 E-value=77 Score=26.24 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=7.7
Q ss_pred eEEEECCCCCee
Q 031212 62 RVVVVDSAGNPL 73 (164)
Q Consensus 62 ~~~l~D~~G~~L 73 (164)
.|.++|.+|+++
T Consensus 116 ~L~mLD~~G~~i 127 (234)
T PRK10523 116 ALEMLDREGNPI 127 (234)
T ss_pred EEEEecCCCCcc
Confidence 456667666665
No 75
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=28.15 E-value=1.3e+02 Score=21.51 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=14.1
Q ss_pred Ccee-CCCeEEEcCCCCEEEEEec
Q 031212 25 PGLT-RGDIGFADSSGDVIYRVNR 47 (164)
Q Consensus 25 ~s~~-~~~f~V~D~~G~~vfrVdg 47 (164)
|.+. ++.+.++|.+|.++-.-.+
T Consensus 23 L~l~~dGnLvl~~~~~~~iWss~~ 46 (114)
T PF01453_consen 23 LILQSDGNLVLYDSNGSVIWSSNN 46 (114)
T ss_dssp EEEETTSEEEEEETTTEEEEE--S
T ss_pred ceECCCCeEEEEcCCCCEEEEecc
Confidence 3443 4568888888777666533
No 76
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=28.03 E-value=78 Score=20.94 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=20.3
Q ss_pred EEEEEEEeeCceeCCCeEEEcCCCCEEEEEecc
Q 031212 16 VDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 16 ~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~ 48 (164)
.+=.|-+++.|++= +|.|.|++|++-|-=+..
T Consensus 29 ~kG~IIe~l~S~~Y-DY~V~~~~GdI~~fKE~E 60 (71)
T PF09629_consen 29 RKGKIIEKLHSATY-DYAVSDETGDITRFKEHE 60 (71)
T ss_dssp SEEEEEEE---SS--SEEEEETTS-EEEE-GGG
T ss_pred cccchhhhhhhhee-eeeeecccCceeeeeecc
Confidence 44556778888888 999999999998865554
No 77
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=27.37 E-value=1.5e+02 Score=24.66 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=16.1
Q ss_pred EEEcCCCCEEEEEecccc
Q 031212 33 GFADSSGDVIYRVNRTQH 50 (164)
Q Consensus 33 ~V~D~~G~~vfrVdg~~~ 50 (164)
|++|+.|++.++|.+..-
T Consensus 52 t~~de~g~v~~~v~~~l~ 69 (236)
T PF06788_consen 52 TLYDEDGEVTKRVSLTLS 69 (236)
T ss_pred EEEcCCCcEEEEEEEEEC
Confidence 789999999999999853
No 78
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=26.78 E-value=80 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=26.1
Q ss_pred CeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEE
Q 031212 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llt 75 (164)
=|.|.+.+|+..|.=+|.+. +.... .|.+++|.+|+-
T Consensus 87 FF~V~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vlg 123 (246)
T PRK12640 87 WLAVQAPDGSEAYTRNGSLQ-------VDANG-QLRTANGLPVLG 123 (246)
T ss_pred EEEEEcCCCCEEEEeCCCee-------ECCCC-CEEcCCCCCccC
Confidence 46666778888888777743 54444 677888888773
No 79
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=26.59 E-value=52 Score=23.84 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=18.7
Q ss_pred eeCCCeEEEcCCCCEEEEEecccc
Q 031212 27 LTRGDIGFADSSGDVIYRVNRTQH 50 (164)
Q Consensus 27 ~~~~~f~V~D~~G~~vfrVdg~~~ 50 (164)
|.+ |+||.|+.|+=.-+.+|...
T Consensus 34 Fpd-GlTv~Da~GqW~~~~~g~~~ 56 (104)
T PF12098_consen 34 FPD-GLTVLDAYGQWRDRATGRLI 56 (104)
T ss_pred CCC-CceEEeccceEecCCCCcEe
Confidence 444 99999999998888888765
No 80
>PF13585 CHU_C: C-terminal domain of CHU protein family; PDB: 3EIF_A 1XF1_B.
Probab=26.08 E-value=59 Score=22.17 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=14.9
Q ss_pred eeCCCeEEEcCCCCEEEEEecccc
Q 031212 27 LTRGDIGFADSSGDVIYRVNRTQH 50 (164)
Q Consensus 27 ~~~~~f~V~D~~G~~vfrVdg~~~ 50 (164)
+..-.+.|||.-|++||+-+++..
T Consensus 26 ~~~~~~~IynrwG~~Vf~~~~~~~ 49 (87)
T PF13585_consen 26 IPNYSLTIYNRWGELVFESNDYNN 49 (87)
T ss_dssp EEEEEEEEE-SSS-EEEE---EEG
T ss_pred cceeEEEEEeCCCcEEEEECCCCC
Confidence 333478999999999999999854
No 81
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=26.04 E-value=2.5e+02 Score=20.00 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=38.4
Q ss_pred eeCceeCCCeEEEcCCCC---EEEEEeccccCCcCCccccCCeEEEECCC----CCeeEEEEecCCCceeEEec
Q 031212 23 KYPGLTRGDIGFADSSGD---VIYRVNRTQHQSKSNSSQRRKRVVVVDSA----GNPLISVYRQDKGLWQGFKG 89 (164)
Q Consensus 23 k~~s~~~~~f~V~D~~G~---~vfrVdg~~~~~~~~~s~~~~~~~l~D~~----G~~Llti~~K~~~~w~~~~g 89 (164)
-.+.+.+|.|++++..+. -.|++|... .++++.+++.. |+++.=|.+=-=++..+...
T Consensus 31 ~~~~~~g~~~~~~~~~~~~~~~~~~Ld~~~---------~Pk~id~~~~~g~~~g~~~~gIY~l~gd~L~vC~~ 95 (107)
T TIGR03067 31 LVWTFKGDKLTVKDGEGDQGKGTFKLDPAA---------NPKTIDLTSPDGPDKGKTIKGIYKLDGDTLTVCFS 95 (107)
T ss_pred eEEEEeCCEEEEEcCCCcceeEEEEECCCC---------CccEEEEEccCCCCCCCEEEEEEEEcCCEEEEEEC
Confidence 467788989999988775 567776643 48898998754 45665555433345554443
No 82
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=26.02 E-value=66 Score=18.42 Aligned_cols=17 Identities=12% Similarity=0.495 Sum_probs=10.6
Q ss_pred EEEcCCCCE-EEEEeccc
Q 031212 33 GFADSSGDV-IYRVNRTQ 49 (164)
Q Consensus 33 ~V~D~~G~~-vfrVdg~~ 49 (164)
-|||+.|++ |||..+..
T Consensus 14 pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 14 PVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp EEE-TTS-EEEEEES-TT
T ss_pred EeecCCCcEEEEEcCCCc
Confidence 488998875 78887764
No 83
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=25.66 E-value=1.1e+02 Score=25.21 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=24.8
Q ss_pred CCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeE
Q 031212 30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Ll 74 (164)
++|-+.+.+|...|.=+|.+. +...- .|.+++|.+|+
T Consensus 99 ~gFf~v~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl 135 (257)
T PRK12819 99 SSFFVTSKNGETFLTRDGSFT-------LNSDR-YLQTASGAFVM 135 (257)
T ss_pred CEEEEEcCCCCeeEeeCCCee-------ECCCC-CEEcCCCCEEe
Confidence 456666777887788777643 44444 67777787777
No 84
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=24.04 E-value=1.9e+02 Score=21.28 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=24.3
Q ss_pred CCCEEEEEeccccCCcCCc--cccCCeEEEECCCCCeeEE
Q 031212 38 SGDVIYRVNRTQHQSKSNS--SQRRKRVVVVDSAGNPLIS 75 (164)
Q Consensus 38 ~G~~vfrVdg~~~~~~~~~--s~~~~~~~l~D~~G~~Llt 75 (164)
+|.-++.|+|... +.... ..-.=++.|.|++|++|.+
T Consensus 65 ~~~~~l~v~g~i~-N~~~~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 65 DGPGVLVVSGTIR-NRADFPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred CCCCEEEEEEEEE-eCCCCcccCceEEEEEECCCCCEEEE
Confidence 6888888888753 11100 1212278999999999965
No 85
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=24.01 E-value=34 Score=20.52 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=14.9
Q ss_pred cccCCeEEEECCCCCeeEEEEecCC
Q 031212 57 SQRRKRVVVVDSAGNPLISVYRQDK 81 (164)
Q Consensus 57 s~~~~~~~l~D~~G~~Llti~~K~~ 81 (164)
.+++++..--..+.+||+.|++|..
T Consensus 13 CirGHR~s~C~H~dRpL~~i~kkGR 37 (39)
T smart00412 13 CIRGHRSSTCNHNDRPLIPVRPRGR 37 (39)
T ss_pred HHCcCccCCcccCCccceeecCCCC
Confidence 3445554444456677777777754
No 86
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=23.32 E-value=1.1e+02 Score=21.62 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=19.3
Q ss_pred CCeEEEECCCCCeeEEEEec-C-----CCceeEEe
Q 031212 60 RKRVVVVDSAGNPLISVYRQ-D-----KGLWQGFK 88 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llti~~K-~-----~~~w~~~~ 88 (164)
+....|+|.+|.--+.=+.. . -++|.+|.
T Consensus 70 G~~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~~ 104 (105)
T PF11191_consen 70 GPPYYLVDPDGDGNFSRSDANSDSDVSPPQWVIFS 104 (105)
T ss_pred CCCEEEECCCCCCcccccccccCCCCCCcEEEEee
Confidence 45679999999755554444 1 26888774
No 87
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=23.14 E-value=1.3e+02 Score=22.84 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=36.1
Q ss_pred cEEEEEEEeeCcee--CCCeEEEcCCCC------------EEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEE
Q 031212 15 PVDLFVSKKYPGLT--RGDIGFADSSGD------------VIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVY 77 (164)
Q Consensus 15 ~~~L~v~qk~~s~~--~~~f~V~D~~G~------------~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~ 77 (164)
...+.++-++.... .+-|++.+..|. -|+-|+...+ ....+-+.++|.+|+.++.|-
T Consensus 50 ~~I~E~kg~~p~g~~~~G~~Nl~~~~g~~l~gHl~~~~~~~I~fv~~pf~------g~~S~sv~F~~~~G~~~fKvf 120 (141)
T PF06228_consen 50 GAIFEVKGPLPKGKYAHGYYNLMGKDGGPLHGHLKLDNIASIAFVSRPFM------GRESYSVQFFDADGEAMFKVF 120 (141)
T ss_dssp SEEEEEEEES-SEEEETTEEEEEECTTSSEEEEEEGGGEEEEEEEEEEET------TEEEEEEEEEETTSSEEEEEE
T ss_pred CEEEEEecCCCCCeecccceeccCCCcceEEeEEchhheeeeeeeecccC------CCceEEEEEECCCCCEEEEEE
Confidence 34566666654442 345556555553 5677887765 333557889999999998884
No 88
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=22.90 E-value=92 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=20.2
Q ss_pred CEEEEEeccccCCcCCccccCCeEEEECCCCCee
Q 031212 40 DVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPL 73 (164)
Q Consensus 40 ~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~L 73 (164)
.+..|.+|... - .+.+.|.|+.||+|
T Consensus 99 ~P~vRF~Ge~g-------E-q~TlFl~DP~gN~l 124 (138)
T COG3565 99 PPKVRFKGEPG-------E-QRTLFLFDPSGNAL 124 (138)
T ss_pred CceEEecCCcc-------c-eEEEEEECCCCCee
Confidence 45677788753 3 66899999999997
No 89
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=22.00 E-value=62 Score=25.42 Aligned_cols=28 Identities=14% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEEEeeCceeCCCeEEEcCCCCEEEEEecccc
Q 031212 17 DLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQH 50 (164)
Q Consensus 17 ~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~ 50 (164)
..+|.|- + |++|||+ .+|| .||++|+..
T Consensus 25 ~~~~~q~---l-gg~~t~~-~~g~-~~r~~~~~~ 52 (174)
T TIGR03406 25 EVTITQA---L-GGNFTVV-VEGN-MARIDGKDA 52 (174)
T ss_pred EEEEEEc---c-CCeEEEE-EcCe-EEEecCcCh
Confidence 3556663 4 4599984 4577 899999854
No 90
>PRK13239 alkylmercury lyase; Provisional
Probab=21.79 E-value=1.2e+02 Score=24.61 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=23.8
Q ss_pred EEEcCCCCEEEEEeccccCCcCCcccc--CCeEEEECCCCCeeEEEEe
Q 031212 33 GFADSSGDVIYRVNRTQHQSKSNSSQR--RKRVVVVDSAGNPLISVYR 78 (164)
Q Consensus 33 ~V~D~~G~~vfrVdg~~~~~~~~~s~~--~~~~~l~D~~G~~Llti~~ 78 (164)
+++|.+|++| ||.+ |.+ +++|.+ +|+.|.++-=
T Consensus 63 ~~~d~~g~iv----~~pl------S~~pT~H~v~v---~Gr~lyt~CA 97 (206)
T PRK13239 63 TEYDEDGRII----GYGL------TLRPTPHRFEV---DGRQLYTWCA 97 (206)
T ss_pred eEECCCCCEE----eccc------cCCCcCcEEEE---CCEEEEeehH
Confidence 6899999995 3677 544 446555 8988888754
No 91
>PRK05483 rplN 50S ribosomal protein L14; Validated
Probab=21.25 E-value=86 Score=23.27 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.6
Q ss_pred cccCCeEEEECCCCCeeEEE
Q 031212 57 SQRRKRVVVVDSAGNPLISV 76 (164)
Q Consensus 57 s~~~~~~~l~D~~G~~Llti 76 (164)
.+..+-++|.|..|+|+.|=
T Consensus 78 ~F~dNavVLin~~~~p~GTr 97 (122)
T PRK05483 78 RFDDNAAVLLNNDGEPRGTR 97 (122)
T ss_pred EcCCCEEEEECCCCCEeEeE
Confidence 56788889999999999873
No 92
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=21.06 E-value=75 Score=22.37 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=11.2
Q ss_pred eEEEcCCCCEEEEEecc
Q 031212 32 IGFADSSGDVIYRVNRT 48 (164)
Q Consensus 32 f~V~D~~G~~vfrVdg~ 48 (164)
.+|+|++|++||.=.-.
T Consensus 52 I~I~d~~G~vVy~~~~~ 68 (106)
T PF11589_consen 52 ITIKDSTGNVVYSETVS 68 (106)
T ss_dssp EEEEETT--EEEEEEES
T ss_pred EEEEeCCCCEEEEEEcc
Confidence 56779999999986543
No 93
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=21.01 E-value=95 Score=21.05 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=5.8
Q ss_pred eEEEECCCCCe
Q 031212 62 RVVVVDSAGNP 72 (164)
Q Consensus 62 ~~~l~D~~G~~ 72 (164)
-++|.|.+|+.
T Consensus 70 ~FvLT~~dG~r 80 (89)
T smart00800 70 SFVLTDIDGSR 80 (89)
T ss_pred EEEEECCCCCE
Confidence 34555555553
No 94
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=20.96 E-value=1.4e+02 Score=21.95 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=17.1
Q ss_pred ccCCeEEEECCCCCeeEEEEec
Q 031212 58 QRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 58 ~~~~~~~l~D~~G~~Llti~~K 79 (164)
+...+++|.|++|+++.-.|-|
T Consensus 90 l~~~~Lvl~d~dg~~~~~~rv~ 111 (111)
T TIGR03066 90 LTDDELVGKDPDGKKDTLKRVK 111 (111)
T ss_pred ecCCeEEEEcCCCCEeEEEEcC
Confidence 4577889999999998776643
No 95
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=20.83 E-value=1.8e+02 Score=16.40 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=6.1
Q ss_pred EEECCCCCeeEE
Q 031212 64 VVVDSAGNPLIS 75 (164)
Q Consensus 64 ~l~D~~G~~Llt 75 (164)
.-+|+.|+.+-.
T Consensus 20 ~~YD~~Grl~~~ 31 (42)
T TIGR01643 20 YTYDAAGRLVEI 31 (42)
T ss_pred EEECCCCCEEEE
Confidence 445555555433
No 96
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=20.82 E-value=99 Score=20.16 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCEEEEEec
Q 031212 30 GDIGFADSSGDVIYRVNR 47 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg 47 (164)
..+-|+|.+|+++++..|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 356788999999998765
No 97
>COG3764 SrtA Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]
Probab=20.20 E-value=2.2e+02 Score=23.12 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECC-CCCeeEEE
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS-AGNPLISV 76 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~-~G~~Llti 76 (164)
||.+.|+|.++-.+|+|..... ..+.++.+.|. .|...+||
T Consensus 138 GD~iyv~~~~~~~~Y~v~~~~~-------V~p~~v~~l~~~~g~~~lTL 179 (210)
T COG3764 138 GDKIYVTTKNETYVYKVTDISI-------VDPDDVDVLDDQKGKAELTL 179 (210)
T ss_pred CCEEEEEeCCcEEEEEEEEEEE-------eCcceeeecccCCCCceEEE
Confidence 6678888888888888888754 44666666664 44655555
No 98
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=20.19 E-value=97 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=12.5
Q ss_pred CeEEEECCCCCeeEEEEecC
Q 031212 61 KRVVVVDSAGNPLISVYRQD 80 (164)
Q Consensus 61 ~~~~l~D~~G~~Llti~~K~ 80 (164)
.+..+.|..|...+.|-++.
T Consensus 73 d~Y~F~D~TG~I~VeId~~~ 92 (126)
T TIGR00156 73 DRYVFRDKSGEINVVIPAAV 92 (126)
T ss_pred ceEEEECCCCCEEEEECHHH
Confidence 34567777777666665544
No 99
>CHL00057 rpl14 ribosomal protein L14
Probab=20.05 E-value=85 Score=23.32 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.3
Q ss_pred cccCCeEEEECCCCCeeEEE
Q 031212 57 SQRRKRVVVVDSAGNPLISV 76 (164)
Q Consensus 57 s~~~~~~~l~D~~G~~Llti 76 (164)
.+..+-++|.|..|+|+.|=
T Consensus 78 ~F~~Na~VLin~~~~p~GTr 97 (122)
T CHL00057 78 RFDDNAAVVIDQEGNPKGTR 97 (122)
T ss_pred EcCCceEEEECCCCCEeEeE
Confidence 46678889999999998873
Done!