Query 031212
Match_columns 164
No_of_seqs 104 out of 369
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 6.1E-35 2.1E-39 233.9 18.4 147 1-157 25-176 (217)
2 1zxu_A AT5G01750 protein; PFAM 97.8 0.00011 3.7E-09 58.0 9.2 96 12-118 59-162 (217)
3 2v2f_A Penicillin binding prot 68.5 3 0.0001 21.4 1.9 13 33-45 8-20 (26)
4 2fim_A Tubby related protein 1 59.3 69 0.0024 25.8 10.8 74 70-146 37-119 (276)
5 2ln7_A LPXTG-SITE transpeptida 55.5 3.3 0.00011 30.2 0.7 20 29-48 79-98 (147)
6 3c5n_A Tubby-related protein 1 49.7 94 0.0032 24.5 10.4 62 82-146 32-95 (246)
7 3c12_A FLGD, flagellar protein 48.5 13 0.00044 26.6 3.0 16 62-77 42-57 (138)
8 2pny_A Isopentenyl-diphosphate 46.2 50 0.0017 25.7 6.4 58 30-87 38-103 (246)
9 3fn5_A Sortase A; sortase-fold 45.2 6.4 0.00022 30.1 0.9 42 29-77 102-144 (187)
10 1hzt_A Isopentenyl diphosphate 42.7 34 0.0012 24.8 4.6 58 31-89 5-68 (190)
11 2kw8_A LPXTG-SITE transpeptida 41.8 7.3 0.00025 28.6 0.7 17 31-47 94-110 (158)
12 2wzo_A Transforming growth fac 40.2 44 0.0015 24.1 4.8 41 6-46 25-72 (146)
13 2hbp_A Cytoskeleton assembly c 39.7 36 0.0012 21.9 3.7 39 34-80 8-46 (68)
14 2h1z_A Hybrid atracotoxin; bet 39.5 21 0.00071 20.4 2.2 17 31-47 22-39 (39)
15 3rcc_A Sortase SRTA; sortase f 38.4 7.4 0.00025 28.7 0.3 42 29-77 84-126 (160)
16 2dho_A Isopentenyl-diphosphate 38.1 58 0.002 25.1 5.5 59 29-87 26-92 (235)
17 3g66_A Sortase C; pilus, trans 37.3 13 0.00043 29.0 1.5 41 29-76 132-173 (212)
18 4g1j_A Sortase family protein; 37.0 13 0.00044 29.2 1.5 41 29-76 140-181 (222)
19 2fkb_A Putative nudix hydrolas 35.7 81 0.0028 22.2 5.7 55 30-86 10-69 (180)
20 3o0p_A Sortase family protein; 34.6 18 0.00062 28.2 2.0 21 29-49 137-157 (216)
21 1t2w_A Sortase; transpeptidase 32.8 17 0.00058 26.1 1.5 20 29-48 78-97 (145)
22 4g1h_A Sortase family protein; 32.3 15 0.00053 28.6 1.2 21 29-49 133-153 (215)
23 3osv_A Flagellar basal-BODY RO 32.0 32 0.0011 24.4 2.8 17 31-47 40-56 (138)
24 1axh_A Atracotoxin-HVI, ACTX-H 30.0 30 0.001 19.4 1.8 16 31-46 21-37 (37)
25 4h3o_A Lectin; cadmium, plant 29.4 1.1E+02 0.0038 20.3 5.2 16 60-75 60-75 (105)
26 3h9n_A Ribosome maturation fac 29.2 96 0.0033 23.0 5.2 13 66-78 106-118 (177)
27 2heq_A YORP protein; SH3-like, 29.0 54 0.0019 21.4 3.2 32 16-48 34-65 (84)
28 3r0e_B Lectin; carbohydrate bi 27.3 1.4E+02 0.0048 19.9 5.5 14 62-75 65-78 (110)
29 3isy_A Bsupi, intracellular pr 26.9 33 0.0011 24.4 2.1 18 31-48 45-62 (120)
30 2w1j_A Putative sortase, sorta 25.3 33 0.0011 26.5 2.0 21 29-49 133-153 (212)
31 3mez_B Mannose-specific lectin 25.2 1.5E+02 0.0051 19.8 5.3 16 60-75 66-81 (113)
32 3rbj_A Sortase C1, sortase fam 25.1 27 0.00093 27.4 1.5 21 29-49 151-171 (230)
33 3my2_A Lipopolysaccharide expo 25.0 72 0.0025 23.4 3.8 62 18-79 17-83 (175)
34 1q27_A Putative nudix hydrolas 23.3 68 0.0023 22.5 3.3 58 30-88 7-68 (171)
35 2ph0_A Uncharacterized protein 22.7 83 0.0029 23.5 3.8 34 40-79 106-139 (174)
36 2f1l_A 16S rRNA processing pro 21.7 1.8E+02 0.0062 21.7 5.6 14 65-78 123-136 (187)
37 3d33_A Domain of unknown funct 21.6 56 0.0019 22.6 2.4 32 14-45 29-67 (108)
38 1smp_I Erwinia chrysanthemi in 21.3 2E+02 0.0069 19.6 5.5 33 58-91 60-92 (101)
39 2w1k_A Putative sortase; pilus 20.9 31 0.0011 27.5 1.0 42 29-77 131-173 (252)
40 2ovi_A Hypothetical protein CH 20.9 95 0.0032 22.9 3.7 33 41-79 106-138 (164)
41 2hqv_A AGR_C_4470P; NESG, ATR9 20.1 97 0.0033 23.7 3.7 32 42-79 132-163 (195)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=6.1e-35 Score=233.88 Aligned_cols=147 Identities=26% Similarity=0.615 Sum_probs=118.2
Q ss_pred CcccccccCCCCCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC
Q 031212 1 MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD 80 (164)
Q Consensus 1 ~~~v~~~~c~~~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~ 80 (164)
+|||+++|| +++|+.|+||||++++++|+|+|+|++|++||+|+|+.+ +. ++++.|+|++|++|++|++|.
T Consensus 25 ~~vv~~~~~--~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~------~~-~~~~~l~D~~G~~l~~i~rk~ 95 (217)
T 1zxu_A 25 GVVVDPKYC--APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVF------GL-HDKRVLLDGSGTPVVTLREKM 95 (217)
T ss_dssp CCSSCGGGB--CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSST------TC-CSEEEEECTTSCEEEEEEC--
T ss_pred EEEECcccc--CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEcccc------CC-CCEEEEECCCCCEEEEEEccc
Confidence 689999999 999999999999999999999999999999999999977 55 778899999999999999996
Q ss_pred ---CCceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCCCCCCcceEEEEcccCCceeEEEEC--CeEEEEEeec
Q 031212 81 ---KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRG--NSIIAQSHVQ 155 (164)
Q Consensus 81 ---~~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~~~~~~~~~~i~G~~~~~s~~I~~~--~~~VA~v~rk 155 (164)
+++|++|.+++.++++|+|+|||+..+.++++++|+++++. .++.++|+|+|+|++++|+|+++ +.+||+|+||
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~-~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk 174 (217)
T 1zxu_A 96 VSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNK-DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRK 174 (217)
T ss_dssp ----CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCC-C-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC
T ss_pred cccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCC-CCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEee
Confidence 48999999987666679999999842337889999988653 23467899999999999999999 6899999999
Q ss_pred CC
Q 031212 156 AS 157 (164)
Q Consensus 156 ~~ 157 (164)
++
T Consensus 175 ~~ 176 (217)
T 1zxu_A 175 HT 176 (217)
T ss_dssp --
T ss_pred ee
Confidence 65
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.80 E-value=0.00011 Score=57.99 Aligned_cols=96 Identities=21% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCCcEEEEEEEeeCceeCCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCC----eeEEEEec--C--CCc
Q 031212 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN----PLISVYRQ--D--KGL 83 (164)
Q Consensus 12 ~~~~~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~----~Llti~~K--~--~~~ 83 (164)
+.....|+|..+.+++.. .+.|+|.+|++++++.-+.+ +++ .++.++++.+. +|++|+++ . .+.
T Consensus 59 ~~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~------~~~-~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~ 130 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMV------SMH-DRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK 130 (217)
T ss_dssp TTSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC-------------CEEEEEETTCCCGGGEEEEEEC-------CC
T ss_pred CCCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEcccc------ccC-cEEEEEcCCCCCCCcEEEEEEEeccccCCCe
Confidence 557788999999888866 99999999999999999877 674 57788988765 79999998 3 378
Q ss_pred eeEEecCCCCCceEEEEEEecccCCCCceEEEEEe
Q 031212 84 WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIV 118 (164)
Q Consensus 84 w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~ 118 (164)
|+++.++.+.++.+.+.|+..+ +...+.|.-.
T Consensus 131 ~~V~~~~~~~~~~~~~~I~G~~---~~~~f~I~~~ 162 (217)
T 1zxu_A 131 LDVFLGHNKDEKRCDFRVKGSW---LERSCVVYAG 162 (217)
T ss_dssp EEEEETTCCC-CCCSEEEESCT---TTTCCEEEET
T ss_pred EEEEECCCCCCCceEEEEEEeE---eCCEEEEEEC
Confidence 9998876444445667776542 3446666544
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=68.47 E-value=3 Score=21.40 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=11.3
Q ss_pred EEEcCCCCEEEEE
Q 031212 33 GFADSSGDVIYRV 45 (164)
Q Consensus 33 ~V~D~~G~~vfrV 45 (164)
.|||.+|+++..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 6899999998887
No 4
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=59.32 E-value=69 Score=25.84 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=45.0
Q ss_pred CCeeEEEEecC-------CCceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCC-C-CCCcceEEEEcccCCcee
Q 031212 70 GNPLISVYRQD-------KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDEN-S-EDSASHFTIKGSPFQKSC 140 (164)
Q Consensus 70 G~~Llti~~K~-------~~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~-~-~~~~~~~~i~G~~~~~s~ 140 (164)
|-.-+.|+|.. ++.+..|..+ +.+..+...||.. ....+.|.|++.... + .....-=+|+.||++..|
T Consensus 37 ~~iqC~I~R~k~g~~~g~yp~y~L~l~~--~~~~fLLaarK~k-~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF 113 (276)
T 2fim_A 37 RTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRF 113 (276)
T ss_dssp CCEEEEEEEEC-------CCEEEEEECS--SSCEEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSSEE
T ss_pred CeEEEEEEEeCCCCCCCCceEEEEEEeC--CCCEEEEEEEecc-CCCCceEEEEecchhcccCCceEEEEEEEccCCCEE
Confidence 44556675432 2677777753 2345667777654 344567888765321 1 112333567899999999
Q ss_pred EEEECC
Q 031212 141 TIYRGN 146 (164)
Q Consensus 141 ~I~~~~ 146 (164)
+||+.|
T Consensus 114 ~iyD~G 119 (276)
T 2fim_A 114 TVFDNG 119 (276)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 999885
No 5
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=55.55 E-value=3.3 Score=30.18 Aligned_cols=20 Identities=5% Similarity=0.238 Sum_probs=11.5
Q ss_pred CCCeEEEcCCCCEEEEEecc
Q 031212 29 RGDIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~ 48 (164)
||.+.|++.++..+|+|+..
T Consensus 79 GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEeE
Confidence 44555555556666666554
No 6
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=49.72 E-value=94 Score=24.54 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=37.4
Q ss_pred CceeEEecCCCCCceEEEEEEecccCCCCceEEEEEecCC-C-CCCcceEEEEcccCCceeEEEECC
Q 031212 82 GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDEN-S-EDSASHFTIKGSPFQKSCTIYRGN 146 (164)
Q Consensus 82 ~~w~~~~g~~~~~~~~if~Vkk~~~~~~k~~~~V~l~~~~-~-~~~~~~~~i~G~~~~~s~~I~~~~ 146 (164)
+.+..|..++ .+..+...||.. ....+.|.|++.... + .....-=+|+-||++..|+||+.|
T Consensus 32 p~y~l~~~~~--~~~fLlaark~~-~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g 95 (246)
T 3c5n_A 32 PSYFLHLDTE--KKVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNG 95 (246)
T ss_dssp CEEEEEESSS--SCCEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSC
T ss_pred eEEEEEEeCC--CcEEEEeeeecc-CCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCC
Confidence 5677776542 223566666653 344567888764331 1 112333567889999999999875
No 7
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=48.54 E-value=13 Score=26.56 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=10.6
Q ss_pred eEEEECCCCCeeEEEE
Q 031212 62 RVVVVDSAGNPLISVY 77 (164)
Q Consensus 62 ~~~l~D~~G~~Llti~ 77 (164)
.+.|+|++|+.+-+|.
T Consensus 42 ~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 42 NFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEECSSCCEEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 5566777777766664
No 8
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=46.21 E-value=50 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=34.8
Q ss_pred CCeEEEcCCCCEEEEEeccccCC---cCCccccC-CeEEEECCCCCeeEEEEecC---C-CceeEE
Q 031212 30 GDIGFADSSGDVIYRVNRTQHQS---KSNSSQRR-KRVVVVDSAGNPLISVYRQD---K-GLWQGF 87 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~~~~---~~~~s~~~-~~~~l~D~~G~~Llti~~K~---~-~~w~~~ 87 (164)
.-+.|+|++|+++.++.-...-. -+.+-.+. -.++|+|.+|+.|++-|... + +.|..-
T Consensus 38 E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p 103 (246)
T 2pny_A 38 EMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDS 103 (246)
T ss_dssp CEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCS
T ss_pred ceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEec
Confidence 36899999999999986553200 00011111 14468899998887655332 2 578743
No 9
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=45.20 E-value=6.4 Score=30.05 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECC-CCCeeEEEE
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS-AGNPLISVY 77 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~-~G~~Llti~ 77 (164)
||.+.|++.++..+|+|+.... ..+.++-++++ .|++.+||-
T Consensus 102 GD~I~v~~~~~~~~Y~V~~~~v-------V~p~d~~vl~~~~g~~~LTLi 144 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKDVFT-------VAPERVDVIDDTAGLKEVTLV 144 (187)
T ss_dssp TCEEEEECSSEEEEEEEEEEEE-------ECTTCGGGGSCCTTCCEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeEEE-------ECcccceeeccCCCCCEEEEE
Confidence 5678888888888888887643 33444334443 566666663
No 10
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=42.65 E-value=34 Score=24.80 Aligned_cols=58 Identities=10% Similarity=0.212 Sum_probs=19.6
Q ss_pred CeEEEcCCCCEEEEEeccccCCcCCccc-cCCeEEEECCCCCeeEEEEecC----CCceeE-Eec
Q 031212 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQ-RRKRVVVVDSAGNPLISVYRQD----KGLWQG-FKG 89 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~~~~~~~~~s~-~~~~~~l~D~~G~~Llti~~K~----~~~w~~-~~g 89 (164)
-+.|+|.+|+++..+.-...- .+.+.. +.-.++++|.+|+.|+.-|... .+.|.. --|
T Consensus 5 ~~~v~d~~~~~~g~~~r~~~~-~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG 68 (190)
T 1hzt_A 5 HVILLNAQGVPTGTLEKYAAH-TADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCG 68 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEE
T ss_pred EEEEECCCCCEeeeEEHhhhc-ccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccc
Confidence 478999999999877655430 000011 1225578898898877655332 268987 444
No 11
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=41.76 E-value=7.3 Score=28.59 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=7.3
Q ss_pred CeEEEcCCCCEEEEEec
Q 031212 31 DIGFADSSGDVIYRVNR 47 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg 47 (164)
.+.|++.++...|+|..
T Consensus 94 ~i~v~~~~~~~~Y~V~~ 110 (158)
T 2kw8_A 94 KIYLYDNENEYEYAVTG 110 (158)
T ss_dssp EEEEECSSEEEEEEEEE
T ss_pred EEEEEECCcEEEEEEEE
Confidence 34444444444444444
No 12
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=40.25 E-value=44 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=26.2
Q ss_pred cccCC-CCCCcEEEEEEEeeCceeCCC------eEEEcCCCCEEEEEe
Q 031212 6 PIYTA-NSPIPVDLFVSKKYPGLTRGD------IGFADSSGDVIYRVN 46 (164)
Q Consensus 6 ~~~c~-~~~~~~~L~v~qk~~s~~~~~------f~V~D~~G~~vfrVd 46 (164)
+.|+. ..-+|+-|...+..+|..+.+ ++|.|..+.++|+|.
T Consensus 25 ~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~~~P~F~V~ 72 (146)
T 2wzo_A 25 PGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGVQPQFEIV 72 (146)
T ss_dssp GGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECSSSEEEEEE
T ss_pred CCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECCCcceeEEE
Confidence 45652 134799999999988875533 455555556666654
No 13
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=39.72 E-value=36 Score=21.92 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=29.5
Q ss_pred EEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC
Q 031212 34 FADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD 80 (164)
Q Consensus 34 V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~ 80 (164)
-+|.+|. |+|+..+. ..+..++.|.=.+|..+..--.|+
T Consensus 8 WtDrtG~--F~VeA~fl------g~~dgki~LhK~nGv~I~VP~~kl 46 (68)
T 2hbp_A 8 WVDRSGT--FKVDAEFI------GCAKGKIHLHKANGVKIAVAADKL 46 (68)
T ss_dssp EEBSSSC--CEEEEEEE------EEETTEEEEECTTSCEEEEETTSB
T ss_pred EEcCCCC--eEEEEEEE------EEeCCEEEEEecCCcEEEeEhHHc
Confidence 3566665 69999988 677889999999998876655554
No 14
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=39.48 E-value=21 Score=20.37 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=12.5
Q ss_pred CeEEE-cCCCCEEEEEec
Q 031212 31 DIGFA-DSSGDVIYRVNR 47 (164)
Q Consensus 31 ~f~V~-D~~G~~vfrVdg 47 (164)
.++-. ++||+.|+|.+.
T Consensus 22 sct~~~NeNGntV~rC~~ 39 (39)
T 2h1z_A 22 TCTQERNENGHTVYYCRA 39 (39)
T ss_dssp EEEEEECSSCCEEEEEEC
T ss_pred ceeEEeccCCCEEEeecC
Confidence 44443 689999999873
No 15
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=38.41 E-value=7.4 Score=28.75 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECC-CCCeeEEEE
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS-AGNPLISVY 77 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~-~G~~Llti~ 77 (164)
||.+.|++.++...|+|+.... ..+.++-++++ .|++.+||-
T Consensus 84 GD~i~v~~~~~~~~Y~V~~~~v-------v~p~~~~~l~~~~~~~~ltLi 126 (160)
T 3rcc_A 84 GMKVYLTDKSKVYTYTITEISK-------VTPEHVEVIDDTPGKSQLTLV 126 (160)
T ss_dssp TCEECCBCSSCBCCEEEEEEEE-------ECTTCCCCCCCCTTCCEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeEEE-------ECcccceeeccCCCCCEEEEE
Confidence 5567777777788888877643 33444444443 466666664
No 16
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=38.12 E-value=58 Score=25.09 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=35.5
Q ss_pred CCCeEEEcCCCCEEEEEeccccCC---cCCccccC-CeEEEECCCCCeeEEEEecC---C-CceeEE
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQS---KSNSSQRR-KRVVVVDSAGNPLISVYRQD---K-GLWQGF 87 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~---~~~~s~~~-~~~~l~D~~G~~Llti~~K~---~-~~w~~~ 87 (164)
..-+.|+|++|+++.++.-...-. -+.+-.+. -.++|+|.+|+.|++-|... + +.|..-
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p 92 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNT 92 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESS
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEec
Confidence 346899999999999986543200 00011111 13468899999888655332 2 578843
No 17
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=37.34 E-value=13 Score=28.99 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEEC-CCCCeeEEE
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVD-SAGNPLISV 76 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D-~~G~~Llti 76 (164)
||.+.|++.+|...|+|+.... ..+.++-.++ ..|.+.+||
T Consensus 132 GD~I~v~~~~~~~~Y~V~~~~v-------V~p~d~~~l~~~~~~~~LTL 173 (212)
T 3g66_A 132 GDIFYLHVLDQVLAYQVDQIVT-------VEPNDFEPVLIQHGEDYATL 173 (212)
T ss_dssp TCEEEEEETTEEEEEEEEEEEE-------ECTTCCGGGSCCTTCEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeEEE-------ECccccceeccCCCCCEEEE
Confidence 5567777777777777776543 2233332222 345666555
No 18
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=36.99 E-value=13 Score=29.18 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=24.1
Q ss_pred CCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEEC-CCCCeeEEE
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVD-SAGNPLISV 76 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D-~~G~~Llti 76 (164)
||.+.|++.+|...|+|+.... ..+.++-.++ ..|++.+||
T Consensus 140 GD~I~v~~~~~~~~Y~V~~~~v-------V~p~d~~~l~~~~g~~~LTL 181 (222)
T 4g1j_A 140 GDRFYIEHIGGKIAYQVDQIKV-------IAPDQLEDLYVIQGEDHVTL 181 (222)
T ss_dssp TCEEEEEETTEEEEEEEEEEEE-------ECTTCCGGGSCCTTCEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeEEE-------ECcccceeeccCCCCCEEEE
Confidence 5567777777777777777643 3344332333 346666665
No 19
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=35.71 E-value=81 Score=22.24 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCeEEEcCCCCEEEEEeccccCCcCCccc-cCCeEEEECCCCCeeEEEEecC----CCceeE
Q 031212 30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQ-RRKRVVVVDSAGNPLISVYRQD----KGLWQG 86 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~~~~~~~~s~-~~~~~~l~D~~G~~Llti~~K~----~~~w~~ 86 (164)
.-++|+|.+|+++....-.... +.+-. ..--+++.|.+|+.|+.-|... .+.|..
T Consensus 10 E~~~i~d~~~~~~g~~~r~~~~--~~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 10 EWVDIVNEENEVIAQASREQMR--AQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDA 69 (180)
T ss_dssp CEEEEECTTSCEEEEEEHHHHH--HHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEES
T ss_pred eeEEEECCCCCEeeEEEHHHhh--ccCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEe
Confidence 3689999999999988754320 00001 1124567899999887544332 246876
No 20
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=34.60 E-value=18 Score=28.19 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=12.7
Q ss_pred CCCeEEEcCCCCEEEEEeccc
Q 031212 29 RGDIGFADSSGDVIYRVNRTQ 49 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~ 49 (164)
||.+.|++.++..+|+|+...
T Consensus 137 GD~I~v~~~~~~~~Y~V~~~~ 157 (216)
T 3o0p_A 137 GDKFYIQNIKETIAYQVDQIK 157 (216)
T ss_dssp TCEEEEECSSCEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeEE
Confidence 455666666666666666643
No 21
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=32.82 E-value=17 Score=26.08 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=13.1
Q ss_pred CCCeEEEcCCCCEEEEEecc
Q 031212 29 RGDIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~ 48 (164)
||.+.|++.++...|+|+..
T Consensus 78 Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 78 GSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 45666666666677777665
No 22
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=32.31 E-value=15 Score=28.55 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=13.5
Q ss_pred CCCeEEEcCCCCEEEEEeccc
Q 031212 29 RGDIGFADSSGDVIYRVNRTQ 49 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~ 49 (164)
||.+.|++.+|...|+|+...
T Consensus 133 GD~I~v~~~~~~~~Y~V~~~~ 153 (215)
T 4g1h_A 133 GQIFYVTNIKETLAYKVVSIK 153 (215)
T ss_dssp TCEEEEECSSCEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeEE
Confidence 456666666666777776653
No 23
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=31.97 E-value=32 Score=24.45 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.9
Q ss_pred CeEEEcCCCCEEEEEec
Q 031212 31 DIGFADSSGDVIYRVNR 47 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg 47 (164)
..+|+|++|++|.+++-
T Consensus 40 ~v~I~d~~G~~V~t~~~ 56 (138)
T 3osv_A 40 WVNVYDDKGTVVNRINL 56 (138)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 56899999999999984
No 24
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=30.03 E-value=30 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=11.7
Q ss_pred CeEEE-cCCCCEEEEEe
Q 031212 31 DIGFA-DSSGDVIYRVN 46 (164)
Q Consensus 31 ~f~V~-D~~G~~vfrVd 46 (164)
.++-. ++||+.|+|.|
T Consensus 21 sct~k~NeNGntV~RC~ 37 (37)
T 1axh_A 21 SCTFKENENGNTVKRCD 37 (37)
T ss_dssp CEEEEECSSSCEEEEEC
T ss_pred ccceeeccCCcEeeecC
Confidence 44443 68999999975
No 25
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=29.36 E-value=1.1e+02 Score=20.33 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=9.0
Q ss_pred CCeEEEECCCCCeeEE
Q 031212 60 RKRVVVVDSAGNPLIS 75 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llt 75 (164)
...|+|+|.+|+++.+
T Consensus 60 dGnLvL~d~~~~~vWs 75 (105)
T 4h3o_A 60 DGNFVVYDSSGRSLWA 75 (105)
T ss_dssp TSCEEEECTTCCEEEE
T ss_pred CccEEEECCCcEEEEE
Confidence 3355666666666554
No 26
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=29.16 E-value=96 Score=22.96 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=5.5
Q ss_pred ECCCCCeeEEEEe
Q 031212 66 VDSAGNPLISVYR 78 (164)
Q Consensus 66 ~D~~G~~Llti~~ 78 (164)
+|.+|..|.+|..
T Consensus 106 ~~~~g~~lG~V~~ 118 (177)
T 3h9n_A 106 VNLEGYTMGTVTE 118 (177)
T ss_dssp EETTCCEEEEEEE
T ss_pred EeCCCCEEEEEEE
Confidence 3444444444433
No 27
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=29.03 E-value=54 Score=21.38 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=25.6
Q ss_pred EEEEEEEeeCceeCCCeEEEcCCCCEEEEEecc
Q 031212 16 VDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 16 ~~L~v~qk~~s~~~~~f~V~D~~G~~vfrVdg~ 48 (164)
.+=.|-+++.|+.= +|.|.|++|++-|-=+..
T Consensus 34 rkGkIie~~hSa~Y-DYaVsdetGdIt~fKEhE 65 (84)
T 2heq_A 34 RKGKIIEHLHSATY-DYAVSDETGDITYFKEHE 65 (84)
T ss_dssp SEEEEEEECCCSSC-SEEEEETTSCEEEECGGG
T ss_pred cccchhhhhhhhee-eeeeecccCceeeeeccc
Confidence 44567788888888 999999999998866554
No 28
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=27.29 E-value=1.4e+02 Score=19.91 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=6.9
Q ss_pred eEEEECCCCCeeEE
Q 031212 62 RVVVVDSAGNPLIS 75 (164)
Q Consensus 62 ~~~l~D~~G~~Llt 75 (164)
.|+|+|.+|+++.+
T Consensus 65 NLvl~d~~~~~iW~ 78 (110)
T 3r0e_B 65 ELIIKDDDFKTIWS 78 (110)
T ss_dssp CEEEECTTCCEEEE
T ss_pred cEEEEeCCCCEEEE
Confidence 44555555554443
No 29
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=26.94 E-value=33 Score=24.35 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.2
Q ss_pred CeEEEcCCCCEEEEEecc
Q 031212 31 DIGFADSSGDVIYRVNRT 48 (164)
Q Consensus 31 ~f~V~D~~G~~vfrVdg~ 48 (164)
+|.|+|.+|+.|||=..-
T Consensus 45 Df~v~d~~G~~VwrwS~~ 62 (120)
T 3isy_A 45 ELVVYDSEHKERYRYSKE 62 (120)
T ss_dssp EEEEECTTCCEEEETTTT
T ss_pred EEEEECCCCCEEEEcccc
Confidence 688899999999985443
No 30
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A {Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Probab=25.31 E-value=33 Score=26.47 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=13.2
Q ss_pred CCCeEEEcCCCCEEEEEeccc
Q 031212 29 RGDIGFADSSGDVIYRVNRTQ 49 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~ 49 (164)
||.+.|++..+...|+|....
T Consensus 133 GD~i~v~~~~~~~~Y~V~~~~ 153 (212)
T 2w1j_A 133 GDKFYVHNIKEVMAYQVDQVK 153 (212)
T ss_dssp TCEEEEECSSCEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEEE
Confidence 455666666666677776653
No 31
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=25.25 E-value=1.5e+02 Score=19.84 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=9.1
Q ss_pred CCeEEEECCCCCeeEE
Q 031212 60 RKRVVVVDSAGNPLIS 75 (164)
Q Consensus 60 ~~~~~l~D~~G~~Llt 75 (164)
...|+|+|.+|+++.+
T Consensus 66 dGNLVl~d~~~~~iW~ 81 (113)
T 3mez_B 66 SGELDITDDRLNTVFV 81 (113)
T ss_dssp TSCEEEECTTSCEEEE
T ss_pred CCcEEEECCCCCEEEE
Confidence 3356666666665544
No 32
>3rbj_A Sortase C1, sortase family protein; sortase fold, beta-barrel, LID-mutant, PILI BIOG hydrolase; 2.30A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A
Probab=25.10 E-value=27 Score=27.39 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=13.9
Q ss_pred CCCeEEEcCCCCEEEEEeccc
Q 031212 29 RGDIGFADSSGDVIYRVNRTQ 49 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~ 49 (164)
||.|.|++..+..+|+|+...
T Consensus 151 GD~I~v~~~~~~~~Y~V~~~~ 171 (230)
T 3rbj_A 151 GDRFYIEHIGGKIAYQVDQIK 171 (230)
T ss_dssp TCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEEE
Confidence 456667776667777777653
No 33
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=24.99 E-value=72 Score=23.42 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=22.6
Q ss_pred EEEEEeeCceeCCCeE--EEcCCCCEEEEEeccccCCcCC---ccccCCeEEEECCCCCeeEEEEec
Q 031212 18 LFVSKKYPGLTRGDIG--FADSSGDVIYRVNRTQHQSKSN---SSQRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 18 L~v~qk~~s~~~~~f~--V~D~~G~~vfrVdg~~~~~~~~---~s~~~~~~~l~D~~G~~Llti~~K 79 (164)
+.+.....-+...+|+ .||++|++-|++.+.-+.--+. .-+-.-.+.++|..|.+.++|+=+
T Consensus 17 ~~~~~~~Pdy~~~~~~~~~~d~~G~l~~~l~A~~~~hy~~~~~t~~~~P~~~~y~~~~~~~w~i~A~ 83 (175)
T 3my2_A 17 VVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKAD 83 (175)
T ss_dssp --------------------------CEEEECSSEEEETTTTEEEEESCEEEEECTTCCEEEEEECS
T ss_pred ccCCCCCCcEEEEeeEEEEECCCCCEEEEEEeeeEEEecCCCCEEEeccEEEEECCCCceeEEEEeC
Confidence 3444444444445664 6899999999999863300000 001123667888887788888776
No 34
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=23.33 E-value=68 Score=22.47 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=32.7
Q ss_pred CCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEecC----CCceeEEe
Q 031212 30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD----KGLWQGFK 88 (164)
Q Consensus 30 ~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K~----~~~w~~~~ 88 (164)
.-+.|+|.+|+++..+.-.... -.+.....-.++++|.+|+.|+.-|... .+.|+.+-
T Consensus 7 E~~~~~d~~~~~~g~~~r~~~~-l~~~~~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~P 68 (171)
T 1q27_A 7 ERLDLVNERDEVVGQILRTDPA-LRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSV 68 (171)
T ss_dssp SEEEEESSSSCEEEEEESSCTT-SCTTSCEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSE
T ss_pred eeeeeecCCCCEeceEEhhhhc-cccccceEEEEEEECCCCeEEEEEecCCCCCCCCcccccc
Confidence 3589999999999987665320 0000011124567888887665433221 25787433
No 35
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=22.71 E-value=83 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=23.8
Q ss_pred CEEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEec
Q 031212 40 DVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 40 ~~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K 79 (164)
.-+|-|.-... .....-|-++|++|..++.|.-.
T Consensus 106 a~~~~V~kpt~------~g~~~SlqfFD~~G~ai~Kif~~ 139 (174)
T 2ph0_A 106 QHIAFIERKFM------GMDTASVVFFNANGAAMFKIFLG 139 (174)
T ss_dssp CEEEEEEEEET------TEEEEEEEEECTTSCEEEEEECC
T ss_pred cEEEEEEeccC------CCcEEEEEEECCCCCEEEEEEec
Confidence 45777777654 22245678999999999998543
No 36
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=21.69 E-value=1.8e+02 Score=21.72 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=7.0
Q ss_pred EECCCCCeeEEEEe
Q 031212 65 VVDSAGNPLISVYR 78 (164)
Q Consensus 65 l~D~~G~~Llti~~ 78 (164)
++|.+|..|.+|..
T Consensus 123 V~~~~g~~lG~V~~ 136 (187)
T 2f1l_A 123 VIDQGRQLLGVIDH 136 (187)
T ss_dssp EEETTSCEEEEEEE
T ss_pred EEeCCCCEEEEEEE
Confidence 34445555555544
No 37
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=21.59 E-value=56 Score=22.62 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=18.3
Q ss_pred CcEEEEEEEeeCcee------CCCeEEE-cCCCCEEEEE
Q 031212 14 IPVDLFVSKKYPGLT------RGDIGFA-DSSGDVIYRV 45 (164)
Q Consensus 14 ~~~~L~v~qk~~s~~------~~~f~V~-D~~G~~vfrV 45 (164)
.|++..+--..+++. +=..+|+ |++|++||.=
T Consensus 29 iPi~A~id~~~L~I~F~~~~~~vtItI~~~~tG~iVY~~ 67 (108)
T 3d33_A 29 CPITVFTDGYLLTLKNASPDRDMTIRITDMAKGGVVYEN 67 (108)
T ss_dssp CSEEEEEETTEEEEEESSCCSEEEEEEEETTTCCEEEEE
T ss_pred CCcEEEEECCEEEEEECCcCCCEEEEEEECCCCcEEEEE
Confidence 455555544444331 1135677 7889999873
No 38
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=21.27 E-value=2e+02 Score=19.61 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=25.7
Q ss_pred ccCCeEEEECCCCCeeEEEEecCCCceeEEecCC
Q 031212 58 QRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDD 91 (164)
Q Consensus 58 ~~~~~~~l~D~~G~~Llti~~K~~~~w~~~~g~~ 91 (164)
.-+.=+.|||++|+.|...-|..- .|+...+++
T Consensus 60 ptPDGi~L~~~dGs~l~ff~r~~~-~y~~~~~~G 92 (101)
T 1smp_I 60 PTPDGLTLTQADGSAVAFFSRNRD-RYEHKLVDG 92 (101)
T ss_dssp ECSSEEEEECTTSCEEEEEEEETT-EEEEECTTC
T ss_pred cCCCEEEEEcCCCCEEEEecccCC-cceeecCCC
Confidence 345678999999999999766655 788888764
No 39
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=20.95 E-value=31 Score=27.45 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCEEEEEeccccCCcCCccccCCeEEEECC-CCCeeEEEE
Q 031212 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS-AGNPLISVY 77 (164)
Q Consensus 29 ~~~f~V~D~~G~~vfrVdg~~~~~~~~~s~~~~~~~l~D~-~G~~Llti~ 77 (164)
||.+.|++..+...|+|+.... ..+.++-+++. .|.+++||-
T Consensus 131 GD~I~v~~~~~~~~Y~V~~~~v-------V~p~d~~~l~~~~~~~~LTLi 173 (252)
T 2w1k_A 131 GDALYYDNGQEIVEYQMMDTEI-------ILPSEWEKLESVSSKNIMTLI 173 (252)
T ss_dssp TCEEEEECSSEEEEEEEEEEEE-------ECTTCGGGGSCCSSSEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEEEE-------ECcccceeecccCCCCEEEEE
Confidence 5677888887888888888643 22333233343 467777764
No 40
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157}
Probab=20.87 E-value=95 Score=22.87 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=23.4
Q ss_pred EEEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEec
Q 031212 41 VIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 41 ~vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K 79 (164)
-+|-|.-... ....+-|-++|++|..++.|.-.
T Consensus 106 ~~~~V~kp~~------~g~~~SlqfFd~~G~~i~kif~~ 138 (164)
T 2ovi_A 106 HIALIERKFM------GMDTASILFFNKEGSAMLKIFLG 138 (164)
T ss_dssp EEEEEEEEET------TEEEEEEEEECTTSSEEEEEEEC
T ss_pred EEEEEEeecC------CCcEEEEEEECCCCCEEEEEEec
Confidence 3777777654 22245678999999999988654
No 41
>2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: e.62.1.2
Probab=20.05 E-value=97 Score=23.67 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=22.7
Q ss_pred EEEEeccccCCcCCccccCCeEEEECCCCCeeEEEEec
Q 031212 42 IYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (164)
Q Consensus 42 vfrVdg~~~~~~~~~s~~~~~~~l~D~~G~~Llti~~K 79 (164)
+|-|.-... .....-|-++|++|..++.|.-.
T Consensus 132 ~~~V~kpt~------~g~~~SlqfFD~~G~aI~Kif~~ 163 (195)
T 2hqv_A 132 ITFVDRGFH------GRRSCSVWFMNAAGGAMFKIFVR 163 (195)
T ss_dssp EEEEEEEET------TEEEEEEEEEETTSSEEEEEECC
T ss_pred EEEEEeccC------CCcEEEEEEECCCCCEEEEEEcc
Confidence 777777654 22245678899999999988654
Done!