BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031213
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/135 (76%), Positives = 119/135 (88%)
Query: 18 IIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQ 77
IIPKTL +E+TGETVGEV+ VAD HQRKAE A++SD FIALPGGYGTLEELLEVITWAQ
Sbjct: 75 IIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEVITWAQ 134
Query: 78 LGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPL 137
LGIHDKPVGL+NVDGYYNSLL+FIDKAV++GFISP+ R I+VSAP AKELV+KLEEY P
Sbjct: 135 LGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEEYAPC 194
Query: 138 HDGVVAKVKWEAEQV 152
H+ V K+ WE E++
Sbjct: 195 HERVATKLCWEXERI 209
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 101/135 (74%)
Query: 18 IIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQ 77
IIPK L EI+GETVG+V+ VAD H+RKA A+ ++ FIALPGGYGT EELLE ITW+Q
Sbjct: 71 IIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGYGTXEELLEXITWSQ 130
Query: 78 LGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPL 137
LGIH K VGL+NVDGYYN+LL D V++GFI P R+I+VSAP AKEL +K EEY P
Sbjct: 131 LGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELXEKXEEYTPS 190
Query: 138 HDGVVAKVKWEAEQV 152
H V + W+ E++
Sbjct: 191 HXHVASHESWKVEEL 205
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%)
Query: 18 IIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQ 77
+ P L + E+ + + E+ V H+RKA+ + +D FI+ PGG+GT EEL EV+ WAQ
Sbjct: 63 VXPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPGGFGTYEELFEVLCWAQ 122
Query: 78 LGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 134
+GIH KP+GL NV+GY+ + ++ +GF + S ++ S+ EL+++ + Y
Sbjct: 123 IGIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSSSRPDELIEQXQNY 179
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%)
Query: 18 IIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQ 77
+IPK L+++E+ E+ M +RK EM SD FIALPGG GTLEE E T
Sbjct: 83 VIPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALPGGIGTLEEFFEAWTAGY 142
Query: 78 LGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 123
LG+HDKP+ L++ G+Y+ LL ++ V G++S LV N
Sbjct: 143 LGMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDN 188
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 65/112 (58%)
Query: 18 IIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQ 77
+IPK L+++E+ E+ M +RK M ++ FI LPGG GTL+ELL+V T
Sbjct: 74 VIPKMLVHRELADHDADELVVTETMWERKQVMEDRANAFITLPGGVGTLDELLDVWTEGY 133
Query: 78 LGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 129
LG+HDK + +++ G+++ L ++ + D G++S + L+ N + +Q
Sbjct: 134 LGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQ 185
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 45 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLINVDGYYNSLLNFIDK 103
RK R + F+ LPGG+GTL+EL EV+ Q +H PV L++ GY+ L+ ++
Sbjct: 124 RKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAF 182
Query: 104 AVDDGFISPSQRSILVSAPNAKELVQKLEEYVP 136
D + P + +E+VQ L+ P
Sbjct: 183 LRDQKAVGPEDLQLFRLTDEPEEVVQALKAEAP 215
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 38 PVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSL 97
P A + QR + ++ALPGG GTL EL V+ W L + + VD Y+ L
Sbjct: 83 PAATLPQRIGRLLDLGAGYLALPGGVGTLAEL--VLAWNLLYLRRGVGRPLAVDPYWLGL 140
Query: 98 LN 99
L
Sbjct: 141 LK 142
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 23/151 (15%)
Query: 22 TLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIH 81
+++ E V E+ D+ +R R + I PGG GT EELL + LGI
Sbjct: 217 SIIAAEPPNPIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI-----LGIX 271
Query: 82 DKP-----------VGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQK 130
P G + Y+ SL DK + D +++ ++ N E +
Sbjct: 272 XHPENADQPXPIVLTGPKQSEAYFRSL----DKFITDTLGEAARKHYSIAIDNPAEAARI 327
Query: 131 LEEYVPLHDGVVAKVKWEAEQVELNTSLKTE 161
PL V K + + N SLK E
Sbjct: 328 XSNAXPL---VRQHRKDKEDAYSFNWSLKIE 355
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 76 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 131
AQ D P G + VD S F DK +G I + +++SAP AK +V +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 132 -EEYVPLHDGVVA 143
EY P VV+
Sbjct: 150 QHEYSPASHHVVS 162
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 76 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 131
AQ D P G + VD S F DK +G I + +++SAP AK +V +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 132 -EEYVPLHDGVVA 143
EY P VV+
Sbjct: 150 QHEYSPASHHVVS 162
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 33 VGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKP-------- 84
V E+ + D+ +R R + + PGG GT EELL + LGI P
Sbjct: 226 VNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYL-----LGILMHPDNQRQSLP 280
Query: 85 ---VGLINVDGYYNSLLNFIDKAVDD 107
G + Y+ +L FI + D
Sbjct: 281 VILTGPASSRDYFEALDEFIGATIGD 306
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 76 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 131
AQ D P G + V+ S F KA +G + R +++SAP AK LV +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 132 -EEYVPLHDGVVA 143
EY P VV+
Sbjct: 150 HHEYNPSEHHVVS 162
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 76 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 131
AQ D P G + V+ S F KA +G + R +++SAP AK LV +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 132 -EEYVPLHDGVVA 143
EY P VV+
Sbjct: 150 HHEYNPSEHHVVS 162
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 65 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 120 SA 121
A
Sbjct: 214 HA 215
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 65 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 120 SA 121
A
Sbjct: 214 HA 215
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 102 DKAVD--DGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWE 148
DKA+D D S + + PN KEL QKL+E D V ++E
Sbjct: 372 DKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFE 420
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 102 DKAVD--DGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWE 148
DKA+D D S + + PN KEL QKL+E D V ++E
Sbjct: 372 DKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFE 420
>pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RR1|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RRA|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
pdb|3RRA|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
Length = 405
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 119 VSAPNAKELVQKLEEYVPL 137
VSAP AK L+++LE Y PL
Sbjct: 189 VSAPMAKVLIKELEPYRPL 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,565,551
Number of Sequences: 62578
Number of extensions: 185734
Number of successful extensions: 395
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 61
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)