Query 031213
Match_columns 164
No_of_seqs 129 out of 1070
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03641 Lysine_decarbox: Poss 100.0 1.8E-44 3.9E-49 272.5 13.2 131 1-131 1-133 (133)
2 TIGR00730 conserved hypothetic 100.0 1.3E-43 2.8E-48 280.1 14.8 134 1-134 45-178 (178)
3 COG1611 Predicted Rossmann fol 100.0 9.4E-35 2E-39 234.2 14.1 137 1-137 59-198 (205)
4 TIGR00725 conserved hypothetic 100.0 1.1E-30 2.3E-35 203.1 12.7 115 1-131 43-158 (159)
5 TIGR00732 dprA DNA protecting 98.2 2.8E-05 6E-10 63.5 11.1 113 2-130 87-219 (220)
6 PF02481 DNA_processg_A: DNA r 96.3 0.03 6.6E-07 45.3 8.6 99 3-108 88-206 (212)
7 PF05014 Nuc_deoxyrib_tr: Nucl 95.9 0.014 3.1E-07 42.1 4.6 47 39-91 48-98 (113)
8 PRK10736 hypothetical protein; 94.9 0.43 9.3E-06 42.1 11.0 114 4-133 152-285 (374)
9 PF13528 Glyco_trans_1_3: Glyc 92.0 1.4 3E-05 36.4 8.9 71 44-133 242-316 (318)
10 PF11071 DUF2872: Protein of u 90.7 2.6 5.6E-05 32.2 8.3 114 3-133 13-138 (141)
11 COG0758 Smf Predicted Rossmann 89.6 1.5 3.2E-05 38.5 7.1 115 3-133 155-288 (350)
12 PF04101 Glyco_tran_28_C: Glyc 87.9 1.1 2.4E-05 33.8 4.7 54 46-109 66-120 (167)
13 PRK13609 diacylglycerol glucos 87.9 3.5 7.6E-05 35.0 8.3 76 41-136 262-337 (380)
14 TIGR03646 YtoQ_fam YtoQ family 86.4 6.2 0.00013 30.2 7.9 113 3-132 16-140 (144)
15 PRK13608 diacylglycerol glucos 86.4 3.3 7.2E-05 35.8 7.4 74 42-135 263-336 (391)
16 COG3613 Nucleoside 2-deoxyribo 84.1 5.9 0.00013 31.4 7.1 60 42-107 58-125 (172)
17 PLN02605 monogalactosyldiacylg 82.9 5 0.00011 34.4 6.9 73 44-136 274-346 (382)
18 TIGR01426 MGT glycosyltransfer 82.4 11 0.00023 32.3 8.8 71 48-136 287-358 (392)
19 PF12694 MoCo_carrier: Putativ 82.1 21 0.00046 27.5 9.9 82 3-90 12-98 (145)
20 cd03784 GT1_Gtf_like This fami 76.7 37 0.00081 28.8 10.3 72 48-136 300-371 (401)
21 cd03785 GT1_MurG MurG is an N- 73.6 29 0.00063 28.6 8.6 80 41-136 241-323 (350)
22 TIGR03590 PseG pseudaminic aci 73.2 5.6 0.00012 33.0 4.2 39 41-90 230-268 (279)
23 TIGR01133 murG undecaprenyldip 73.2 21 0.00046 29.4 7.7 75 46-136 244-320 (348)
24 PF06258 Mito_fiss_Elm1: Mitoc 73.1 14 0.0003 31.6 6.7 77 48-133 224-307 (311)
25 PRK00726 murG undecaprenyldiph 72.9 26 0.00057 29.2 8.3 81 39-136 239-323 (357)
26 COG0707 MurG UDP-N-acetylgluco 71.9 31 0.00066 30.1 8.7 83 37-136 237-323 (357)
27 PF13607 Succ_CoA_lig: Succiny 71.1 23 0.00049 26.7 6.8 69 52-132 54-136 (138)
28 CHL00200 trpA tryptophan synth 67.7 30 0.00066 28.9 7.5 46 58-108 69-119 (263)
29 PRK06029 3-octaprenyl-4-hydrox 67.6 9.8 0.00021 30.3 4.3 80 52-132 78-167 (185)
30 PRK07313 phosphopantothenoylcy 67.5 24 0.00051 27.8 6.5 88 49-136 74-179 (182)
31 cd03786 GT1_UDP-GlcNAc_2-Epime 67.1 23 0.0005 29.4 6.7 70 43-137 268-337 (363)
32 TIGR00421 ubiX_pad polyprenyl 66.6 12 0.00026 29.5 4.6 83 51-133 74-165 (181)
33 PRK05749 3-deoxy-D-manno-octul 65.8 49 0.0011 28.6 8.7 73 45-136 312-387 (425)
34 TIGR00661 MJ1255 conserved hyp 65.5 22 0.00048 29.7 6.3 55 44-109 239-293 (321)
35 cd03795 GT1_like_4 This family 64.6 42 0.00091 27.2 7.7 74 43-136 254-331 (357)
36 KOG3349 Predicted glycosyltran 64.2 19 0.00041 28.4 5.1 53 48-110 76-129 (170)
37 COG1208 GCD1 Nucleoside-diphos 64.0 12 0.00025 32.6 4.4 81 56-156 4-86 (358)
38 TIGR03088 stp2 sugar transfera 63.6 25 0.00054 29.4 6.3 69 46-135 266-336 (374)
39 smart00046 DAGKc Diacylglycero 63.5 9.2 0.0002 27.9 3.2 34 56-89 52-85 (124)
40 PRK12446 undecaprenyldiphospho 63.4 53 0.0012 28.2 8.4 76 46-135 246-323 (352)
41 cd03804 GT1_wbaZ_like This fam 63.3 40 0.00086 27.8 7.4 73 43-136 252-325 (351)
42 COG1679 Predicted aconitase [G 62.7 73 0.0016 28.5 9.0 102 4-108 235-348 (403)
43 cd04180 UGPase_euk_like Eukary 62.4 23 0.0005 29.5 5.8 69 55-135 2-76 (266)
44 PRK10565 putative carbohydrate 62.3 29 0.00064 31.7 6.9 111 4-132 273-384 (508)
45 PF03492 Methyltransf_7: SAM d 61.6 9.3 0.0002 33.0 3.4 43 92-134 198-243 (334)
46 COG1819 Glycosyl transferases, 61.5 11 0.00024 33.2 3.9 77 3-96 256-332 (406)
47 PF07279 DUF1442: Protein of u 61.4 65 0.0014 26.5 8.0 74 3-82 60-142 (218)
48 PRK00025 lpxB lipid-A-disaccha 61.0 17 0.00036 30.7 4.8 78 46-136 255-340 (380)
49 PRK02645 ppnK inorganic polyph 60.9 15 0.00033 31.3 4.5 53 51-109 56-117 (305)
50 TIGR00519 asnASE_I L-asparagin 60.8 25 0.00054 30.4 5.9 51 49-102 74-129 (336)
51 cd03820 GT1_amsD_like This fam 60.7 56 0.0012 25.6 7.6 73 43-135 243-317 (348)
52 COG0163 UbiX 3-polyprenyl-4-hy 59.7 19 0.0004 29.1 4.5 80 53-132 81-169 (191)
53 cd03823 GT1_ExpE7_like This fa 58.9 39 0.00085 26.9 6.5 73 43-136 253-328 (359)
54 cd00411 Asparaginase Asparagin 58.7 29 0.00063 29.7 5.9 37 51-90 77-113 (323)
55 cd03794 GT1_wbuB_like This fam 57.3 51 0.0011 26.3 6.9 82 35-135 276-363 (394)
56 TIGR03449 mycothiol_MshA UDP-N 57.0 50 0.0011 27.9 7.1 72 43-135 293-366 (405)
57 PF11834 DUF3354: Domain of un 56.6 27 0.00057 23.5 4.2 33 54-92 19-51 (69)
58 PF05159 Capsule_synth: Capsul 56.5 11 0.00024 30.8 2.9 37 48-96 195-231 (269)
59 PF00781 DAGK_cat: Diacylglyce 56.5 11 0.00023 27.4 2.5 47 41-89 40-89 (130)
60 PF04412 DUF521: Protein of un 55.9 1E+02 0.0022 27.6 8.9 95 14-108 246-348 (400)
61 cd03808 GT1_cap1E_like This fa 55.6 59 0.0013 25.6 6.9 74 43-135 254-327 (359)
62 TIGR02113 coaC_strep phosphopa 55.6 18 0.00039 28.4 3.8 85 50-134 74-176 (177)
63 cd01170 THZ_kinase 4-methyl-5- 55.3 46 0.001 27.1 6.3 65 1-91 20-87 (242)
64 cd03801 GT1_YqgM_like This fam 54.6 54 0.0012 25.7 6.5 71 44-135 267-339 (374)
65 cd06259 YdcF-like YdcF-like. Y 54.0 72 0.0016 23.3 6.8 11 54-64 1-11 (150)
66 PRK15484 lipopolysaccharide 1, 54.0 72 0.0016 27.3 7.6 73 43-136 267-343 (380)
67 TIGR00236 wecB UDP-N-acetylglu 53.5 82 0.0018 26.5 7.8 76 36-136 257-333 (365)
68 cd03822 GT1_ecORF704_like This 52.7 53 0.0012 26.4 6.3 72 43-136 258-333 (366)
69 cd03825 GT1_wcfI_like This fam 52.6 85 0.0018 25.4 7.6 72 44-136 256-329 (365)
70 cd03799 GT1_amsK_like This is 52.5 63 0.0014 26.1 6.8 72 43-135 246-325 (355)
71 TIGR03702 lip_kinase_YegS lipi 52.3 1E+02 0.0022 25.6 8.1 33 55-89 54-87 (293)
72 PRK09922 UDP-D-galactose:(gluc 51.4 97 0.0021 26.0 7.9 77 41-138 246-325 (359)
73 cd04951 GT1_WbdM_like This fam 50.9 72 0.0016 25.8 6.9 69 46-135 256-324 (360)
74 cd05844 GT1_like_7 Glycosyltra 50.8 90 0.0019 25.5 7.5 71 44-136 256-335 (367)
75 PF06908 DUF1273: Protein of u 50.4 16 0.00035 28.8 2.8 49 41-90 118-168 (177)
76 PRK00696 sucC succinyl-CoA syn 50.3 1.3E+02 0.0029 26.1 8.8 71 53-134 311-384 (388)
77 cd07025 Peptidase_S66 LD-Carbo 50.0 35 0.00075 28.6 4.9 62 39-107 44-110 (282)
78 cd04193 UDPGlcNAc_PPase UDPGlc 49.9 65 0.0014 27.7 6.6 75 48-133 9-93 (323)
79 PRK13660 hypothetical protein; 49.9 1.1E+02 0.0024 24.3 7.5 47 42-89 119-167 (182)
80 PF14359 DUF4406: Domain of un 49.0 30 0.00064 24.3 3.7 31 45-75 52-85 (92)
81 cd04962 GT1_like_5 This family 48.7 78 0.0017 25.9 6.8 70 45-135 263-334 (371)
82 cd03800 GT1_Sucrose_synthase T 48.2 52 0.0011 27.2 5.7 70 45-135 295-366 (398)
83 cd06424 UGGPase UGGPase cataly 47.6 36 0.00078 29.4 4.7 65 55-133 2-76 (315)
84 PLN02591 tryptophan synthase 47.5 52 0.0011 27.3 5.5 41 65-109 62-107 (250)
85 COG0159 TrpA Tryptophan syntha 46.9 1.1E+02 0.0024 25.9 7.4 63 59-131 72-139 (265)
86 cd03818 GT1_ExpC_like This fam 46.6 87 0.0019 26.6 7.0 72 43-135 291-364 (396)
87 PRK04183 glutamyl-tRNA(Gln) am 46.6 56 0.0012 29.3 5.9 48 53-103 153-205 (419)
88 COG3660 Predicted nucleoside-d 46.5 46 0.001 28.7 5.0 57 48-113 240-297 (329)
89 TIGR02153 gatD_arch glutamyl-t 46.0 55 0.0012 29.2 5.7 36 53-90 140-175 (404)
90 PRK15427 colanic acid biosynth 45.6 95 0.0021 27.0 7.1 72 44-136 290-369 (406)
91 PLN02668 indole-3-acetate carb 45.5 23 0.00049 31.5 3.2 40 94-133 255-298 (386)
92 PF00534 Glycos_transf_1: Glyc 45.2 90 0.002 22.7 6.1 79 36-135 75-156 (172)
93 cd03802 GT1_AviGT4_like This f 45.2 1.1E+02 0.0024 24.5 7.1 68 44-134 235-305 (335)
94 TIGR00215 lpxB lipid-A-disacch 44.7 70 0.0015 27.7 6.2 75 49-136 264-346 (385)
95 PF00483 NTP_transferase: Nucl 44.4 30 0.00064 27.3 3.5 62 57-134 3-68 (248)
96 cd01408 SIRT1 SIRT1: Eukaryoti 44.1 72 0.0016 26.0 5.8 71 42-131 165-235 (235)
97 PF13692 Glyco_trans_1_4: Glyc 43.7 85 0.0018 21.9 5.6 77 36-134 55-132 (135)
98 PRK09355 hydroxyethylthiazole 43.7 1.2E+02 0.0025 25.0 7.1 43 47-93 49-94 (263)
99 cd07062 Peptidase_S66_mccF_lik 43.1 31 0.00068 29.2 3.6 66 39-111 48-119 (308)
100 PRK14046 malate--CoA ligase su 43.1 1.9E+02 0.0042 25.5 8.7 72 53-134 311-384 (392)
101 PF01985 CRS1_YhbY: CRS1 / Yhb 43.1 32 0.00069 23.6 3.1 58 75-134 9-67 (84)
102 KOG4175 Tryptophan synthase al 42.7 1.2E+02 0.0027 25.1 6.8 33 65-100 78-110 (268)
103 cd03807 GT1_WbnK_like This fam 42.0 85 0.0018 24.8 5.9 68 46-135 262-330 (365)
104 COG0148 Eno Enolase [Carbohydr 41.7 97 0.0021 27.9 6.5 77 36-113 311-387 (423)
105 PRK05333 NAD-dependent deacety 41.5 55 0.0012 27.4 4.8 73 43-137 205-279 (285)
106 cd04197 eIF-2B_epsilon_N The N 40.8 39 0.00085 26.5 3.7 62 56-134 3-67 (217)
107 PRK13337 putative lipid kinase 40.8 1.7E+02 0.0036 24.4 7.7 31 55-88 59-89 (304)
108 cd03814 GT1_like_2 This family 40.2 1.3E+02 0.0028 24.0 6.7 70 44-135 258-330 (364)
109 cd03821 GT1_Bme6_like This fam 39.9 1.5E+02 0.0032 23.5 7.0 70 44-136 273-344 (375)
110 CHL00162 thiG thiamin biosynth 39.8 1.1E+02 0.0025 25.9 6.3 31 45-75 180-210 (267)
111 cd03819 GT1_WavL_like This fam 39.7 1.9E+02 0.0041 23.4 7.7 71 43-134 254-327 (355)
112 cd03798 GT1_wlbH_like This fam 39.6 1E+02 0.0022 24.3 6.0 74 43-137 269-344 (377)
113 PRK13111 trpA tryptophan synth 39.5 82 0.0018 26.2 5.5 48 58-109 66-118 (258)
114 PF04127 DFP: DNA / pantothena 39.4 46 0.00099 26.3 3.8 52 3-58 34-88 (185)
115 PRK09461 ansA cytoplasmic aspa 39.4 85 0.0018 27.1 5.8 51 51-103 80-135 (335)
116 cd03812 GT1_CapH_like This fam 39.1 1.2E+02 0.0025 24.6 6.4 72 43-136 257-330 (358)
117 PF05690 ThiG: Thiazole biosyn 38.7 29 0.00064 29.0 2.7 40 45-90 166-205 (247)
118 cd01400 6PGL 6PGL: 6-Phosphogl 38.1 1.9E+02 0.0041 23.0 7.3 44 49-94 19-62 (219)
119 COG3919 Predicted ATP-grasp en 37.9 53 0.0011 28.8 4.1 87 55-152 5-116 (415)
120 PF00710 Asparaginase: Asparag 37.3 92 0.002 26.5 5.6 38 50-89 70-107 (313)
121 TIGR01319 glmL_fam conserved h 37.2 2.9E+02 0.0063 25.3 8.9 19 4-22 89-107 (463)
122 PRK05920 aromatic acid decarbo 37.0 62 0.0013 26.1 4.3 80 52-132 93-182 (204)
123 cd03805 GT1_ALG2_like This fam 37.0 1.6E+02 0.0035 24.4 7.1 70 44-135 291-362 (392)
124 PRK13054 lipid kinase; Reviewe 36.8 1E+02 0.0022 25.7 5.7 34 55-89 58-91 (300)
125 PRK13059 putative lipid kinase 36.0 1.9E+02 0.0042 24.0 7.3 31 56-89 59-89 (295)
126 PTZ00187 succinyl-CoA syntheta 35.7 2.4E+02 0.0053 24.4 8.0 88 41-134 211-312 (317)
127 PF02729 OTCace_N: Aspartate/o 35.6 1.9E+02 0.0041 21.7 6.9 78 5-102 58-135 (142)
128 COG0787 Alr Alanine racemase [ 35.5 1.9E+02 0.004 25.6 7.3 90 46-155 48-138 (360)
129 PF04007 DUF354: Protein of un 35.5 2.2E+02 0.0048 24.7 7.7 96 12-134 211-307 (335)
130 PF00290 Trp_syntA: Tryptophan 35.4 58 0.0013 27.3 4.0 40 65-107 70-110 (259)
131 PLN02871 UDP-sulfoquinovose:DA 35.3 1.5E+02 0.0033 26.0 6.9 74 44-135 323-398 (465)
132 PRK03708 ppnK inorganic polyph 34.0 51 0.0011 27.7 3.5 33 52-91 57-89 (277)
133 COG0252 AnsB L-asparaginase/ar 34.0 1.2E+02 0.0025 26.7 5.8 34 54-90 102-135 (351)
134 TIGR01105 galF UTP-glucose-1-p 33.7 48 0.001 28.0 3.3 60 56-132 6-68 (297)
135 PRK14138 NAD-dependent deacety 33.4 83 0.0018 25.8 4.6 70 43-134 169-240 (244)
136 PF01182 Glucosamine_iso: Gluc 33.1 2E+02 0.0043 22.5 6.6 84 49-133 17-109 (199)
137 PF04230 PS_pyruv_trans: Polys 33.0 61 0.0013 25.0 3.6 41 51-91 62-108 (286)
138 PF06849 DUF1246: Protein of u 32.8 1.1E+02 0.0024 23.0 4.7 60 3-62 11-74 (124)
139 PRK11780 isoprenoid biosynthes 32.6 43 0.00094 27.1 2.7 13 56-68 88-100 (217)
140 cd03816 GT1_ALG1_like This fam 32.5 3.3E+02 0.0072 23.5 8.5 73 43-136 305-380 (415)
141 PLN02275 transferase, transfer 32.4 2.6E+02 0.0055 23.7 7.6 70 43-133 297-369 (371)
142 cd01411 SIR2H SIR2H: Uncharact 32.4 58 0.0013 26.3 3.5 46 43-92 162-207 (225)
143 PRK10494 hypothetical protein; 32.3 83 0.0018 26.1 4.5 13 51-63 77-89 (259)
144 COG4671 Predicted glycosyl tra 32.0 2.2E+02 0.0048 25.5 7.1 79 41-136 283-364 (400)
145 PRK10307 putative glycosyl tra 31.7 3.2E+02 0.007 23.2 8.3 74 43-135 294-371 (412)
146 PF01320 Colicin_Pyocin: Colic 31.3 58 0.0013 22.9 2.8 46 88-137 27-77 (85)
147 PRK13057 putative lipid kinase 31.0 1.2E+02 0.0025 25.1 5.1 32 52-89 50-81 (287)
148 cd04949 GT1_gtfA_like This fam 31.0 1.6E+02 0.0035 24.3 6.1 69 48-136 274-344 (372)
149 cd01356 AcnX_swivel Putative A 30.7 96 0.0021 23.2 4.1 36 52-87 42-77 (123)
150 PRK02649 ppnK inorganic polyph 30.6 1.1E+02 0.0024 26.2 5.0 53 51-109 67-126 (305)
151 cd01171 YXKO-related B.subtili 30.6 1.9E+02 0.0041 23.2 6.2 82 5-92 28-113 (254)
152 cd06320 PBP1_allose_binding Pe 29.9 1.1E+02 0.0024 24.1 4.7 36 50-90 55-90 (275)
153 KOG3196 NADH:ubiquinone oxidor 29.6 20 0.00043 29.3 0.3 36 125-161 186-221 (233)
154 COG2515 Acd 1-aminocyclopropan 29.4 1.8E+02 0.0039 25.3 6.1 56 41-100 170-225 (323)
155 TIGR00253 RNA_bind_YhbY putati 29.4 1.8E+02 0.0039 20.6 5.2 57 77-135 11-68 (95)
156 TIGR01016 sucCoAbeta succinyl- 29.3 3.4E+02 0.0074 23.5 8.0 70 53-133 311-383 (386)
157 cd04728 ThiG Thiazole synthase 29.2 83 0.0018 26.4 3.9 27 48-74 169-195 (248)
158 cd06313 PBP1_ABC_sugar_binding 29.1 1.1E+02 0.0023 24.4 4.5 38 48-90 51-88 (272)
159 PF09152 DUF1937: Domain of un 29.1 44 0.00095 24.8 2.0 37 46-88 73-114 (116)
160 PHA03359 UL17 tegument protein 28.8 29 0.00062 33.2 1.2 13 54-66 649-661 (686)
161 PF14947 HTH_45: Winged helix- 28.5 81 0.0018 21.0 3.1 41 93-134 32-72 (77)
162 PRK05583 ribosomal protein L7A 28.4 2.2E+02 0.0047 20.3 5.6 84 8-102 12-99 (104)
163 KOG3614 Ca2+/Mg2+-permeable ca 28.4 61 0.0013 33.3 3.4 55 55-113 271-326 (1381)
164 cd06300 PBP1_ABC_sugar_binding 28.2 1.3E+02 0.0027 23.7 4.8 38 48-90 56-93 (272)
165 cd02513 CMP-NeuAc_Synthase CMP 28.0 2.2E+02 0.0048 21.8 6.0 58 55-134 3-61 (223)
166 PRK11914 diacylglycerol kinase 27.6 84 0.0018 26.2 3.8 29 56-89 67-95 (306)
167 KOG2683 Sirtuin 4 and related 27.3 79 0.0017 26.8 3.4 42 47-91 241-282 (305)
168 PTZ00075 Adenosylhomocysteinas 27.3 2.7E+02 0.0059 25.5 7.1 75 3-93 268-343 (476)
169 PRK01231 ppnK inorganic polyph 27.3 1.2E+02 0.0025 25.8 4.6 33 52-90 62-94 (295)
170 cd06309 PBP1_YtfQ_like Peripla 27.2 1.5E+02 0.0032 23.3 5.0 38 48-90 51-88 (273)
171 cd01412 SIRT5_Af1_CobB SIRT5_A 27.2 2.7E+02 0.0059 22.1 6.6 67 44-131 156-223 (224)
172 TIGR01099 galU UTP-glucose-1-p 26.7 74 0.0016 25.4 3.2 60 56-132 3-65 (260)
173 PF03454 MoeA_C: MoeA C-termin 26.6 29 0.00063 22.3 0.6 17 50-66 45-61 (72)
174 cd03817 GT1_UGDG_like This fam 26.3 3.3E+02 0.0071 21.5 7.1 41 43-91 269-311 (374)
175 cd03811 GT1_WabH_like This fam 26.1 2.5E+02 0.0054 21.8 6.1 36 48-91 259-296 (353)
176 PRK04155 chaperone protein Hch 26.0 63 0.0014 27.4 2.7 35 56-90 150-188 (287)
177 PRK13957 indole-3-glycerol-pho 25.7 1.9E+02 0.0041 24.1 5.5 57 6-73 165-221 (247)
178 PRK03515 ornithine carbamoyltr 25.5 2.2E+02 0.0049 24.7 6.1 15 6-20 65-79 (336)
179 PRK06895 putative anthranilate 25.3 1.2E+02 0.0027 23.4 4.1 38 51-89 42-79 (190)
180 PRK14077 pnk inorganic polypho 25.2 1.8E+02 0.004 24.6 5.4 52 52-109 64-122 (287)
181 PF02016 Peptidase_S66: LD-car 24.9 18 0.00038 30.4 -0.8 65 39-110 44-114 (284)
182 PRK13278 purP 5-formaminoimida 24.9 2.9E+02 0.0063 24.2 6.7 59 4-62 32-94 (358)
183 KOG1718 Dual specificity phosp 24.8 75 0.0016 25.6 2.7 53 51-104 93-155 (198)
184 PF02698 DUF218: DUF218 domain 24.5 2.8E+02 0.0062 20.2 6.0 10 56-65 40-49 (155)
185 PF13407 Peripla_BP_4: Peripla 24.4 1.8E+02 0.0039 22.6 5.0 39 48-91 51-89 (257)
186 PHA01630 putative group 1 glyc 24.2 1.7E+02 0.0038 24.8 5.2 45 43-96 200-246 (331)
187 PTZ00378 hypothetical protein; 24.2 1.1E+02 0.0024 28.4 4.1 69 43-113 387-457 (518)
188 TIGR00521 coaBC_dfp phosphopan 24.2 1E+02 0.0022 27.3 3.8 88 49-136 75-178 (390)
189 cd06318 PBP1_ABC_sugar_binding 24.2 1.8E+02 0.0039 22.9 5.0 38 48-90 51-88 (282)
190 PRK10122 GalU regulator GalF; 23.9 88 0.0019 26.3 3.2 60 56-132 6-68 (297)
191 cd06281 PBP1_LacI_like_5 Ligan 23.9 2.4E+02 0.0052 22.1 5.6 37 48-90 51-87 (269)
192 CHL00200 trpA tryptophan synth 23.9 4.3E+02 0.0093 22.0 7.9 49 38-87 151-207 (263)
193 PRK13669 hypothetical protein; 23.8 1.8E+02 0.0039 20.1 4.2 36 74-135 36-72 (78)
194 PF04559 Herpes_UL17: Herpesvi 23.8 35 0.00076 31.5 0.8 11 54-64 523-533 (540)
195 cd00331 IGPS Indole-3-glycerol 23.7 3.6E+02 0.0078 21.1 6.9 32 44-75 160-193 (217)
196 PF13941 MutL: MutL protein 23.7 5.7E+02 0.012 23.3 8.8 22 2-23 91-112 (457)
197 PF09353 DUF1995: Domain of un 23.6 1E+02 0.0022 24.4 3.4 38 53-96 98-135 (209)
198 PRK00208 thiG thiazole synthas 23.6 1.3E+02 0.0027 25.4 4.0 26 49-74 170-195 (250)
199 cd03133 GATase1_ES1 Type 1 glu 23.6 92 0.002 25.2 3.1 13 56-68 85-97 (213)
200 PRK10343 RNA-binding protein Y 23.5 2.6E+02 0.0057 19.9 5.2 55 79-135 15-70 (97)
201 TIGR00734 hisAF_rel hisA/hisF 23.4 97 0.0021 25.0 3.3 30 45-74 175-204 (221)
202 COG1609 PurR Transcriptional r 23.3 3.8E+02 0.0083 22.6 7.1 56 46-108 108-174 (333)
203 TIGR00196 yjeF_cterm yjeF C-te 23.2 4.1E+02 0.0089 21.6 8.2 75 12-92 52-128 (272)
204 PTZ00339 UDP-N-acetylglucosami 23.1 1.1E+02 0.0024 28.0 3.9 68 55-133 108-186 (482)
205 PF01989 DUF126: Protein of un 22.8 59 0.0013 22.6 1.6 36 52-87 27-62 (82)
206 PF14953 DUF4504: Domain of un 22.6 1.7E+02 0.0037 24.6 4.7 53 82-135 32-95 (270)
207 TIGR02149 glgA_Coryne glycogen 22.6 3.1E+02 0.0068 22.6 6.3 41 44-92 272-314 (388)
208 PF13500 AAA_26: AAA domain; P 22.5 1.3E+02 0.0029 23.0 3.8 11 126-136 172-182 (199)
209 cd03147 GATase1_Ydr533c_like T 22.4 52 0.0011 26.8 1.5 35 56-90 97-135 (231)
210 cd06301 PBP1_rhizopine_binding 22.3 1.8E+02 0.004 22.7 4.7 37 49-90 53-89 (272)
211 cd03148 GATase1_EcHsp31_like T 22.3 63 0.0014 26.3 2.0 35 56-90 99-137 (232)
212 PRK00861 putative lipid kinase 22.3 1.9E+02 0.0042 23.9 5.0 29 56-89 60-88 (300)
213 COG2242 CobL Precorrin-6B meth 22.1 74 0.0016 25.6 2.3 47 56-109 105-153 (187)
214 PRK07283 hypothetical protein; 22.0 2.7E+02 0.0059 19.5 5.0 80 8-99 13-96 (98)
215 cd07020 Clp_protease_NfeD_1 No 21.9 2.5E+02 0.0055 21.7 5.3 34 52-89 29-65 (187)
216 PRK15480 glucose-1-phosphate t 21.9 98 0.0021 26.0 3.1 60 56-132 6-69 (292)
217 KOG4435 Predicted lipid kinase 21.9 3.4E+02 0.0074 24.8 6.5 56 39-98 100-157 (535)
218 cd06428 M1P_guanylylT_A_like_N 21.8 97 0.0021 24.8 3.0 61 57-134 2-68 (257)
219 PRK05579 bifunctional phosphop 21.8 1.8E+02 0.0039 25.8 4.8 89 48-136 78-182 (399)
220 COG0061 nadF NAD kinase [Coenz 21.6 1.4E+02 0.003 25.0 3.9 37 55-96 57-95 (281)
221 PRK09427 bifunctional indole-3 21.5 2.1E+02 0.0046 25.9 5.3 56 6-72 173-228 (454)
222 PF14338 Mrr_N: Mrr N-terminal 21.5 2.1E+02 0.0045 19.5 4.3 67 61-128 17-88 (92)
223 TIGR00147 lipid kinase, YegS/R 21.4 4.6E+02 0.0099 21.4 7.7 33 53-90 58-91 (293)
224 cd00958 DhnA Class I fructose- 21.4 2.9E+02 0.0063 21.8 5.7 54 81-134 178-233 (235)
225 TIGR01207 rmlA glucose-1-phosp 21.4 99 0.0022 25.8 3.0 60 56-132 2-65 (286)
226 PF01513 NAD_kinase: ATP-NAD k 21.3 1.5E+02 0.0032 24.7 4.0 37 48-90 72-108 (285)
227 PF07293 DUF1450: Protein of u 21.2 1.9E+02 0.004 19.9 3.8 18 118-135 55-72 (78)
228 cd03809 GT1_mtfB_like This fam 21.0 1E+02 0.0023 24.6 3.0 68 44-135 264-334 (365)
229 TIGR02472 sucr_P_syn_N sucrose 21.0 3.7E+02 0.0081 23.4 6.7 67 47-135 331-404 (439)
230 COG2022 ThiG Uncharacterized e 21.0 1.2E+02 0.0027 25.5 3.4 39 46-90 174-212 (262)
231 PRK00779 ornithine carbamoyltr 20.9 5.2E+02 0.011 21.9 7.6 98 6-105 63-173 (304)
232 PRK03372 ppnK inorganic polyph 20.9 2.3E+02 0.0049 24.3 5.1 53 51-109 71-130 (306)
233 PF12804 NTP_transf_3: MobA-li 20.8 86 0.0019 22.9 2.3 57 56-133 1-57 (160)
234 PRK15494 era GTPase Era; Provi 20.7 5.3E+02 0.012 22.0 9.7 85 50-138 129-218 (339)
235 PRK11096 ansB L-asparaginase I 20.7 1.4E+02 0.003 26.1 3.9 36 51-89 99-134 (347)
236 KOG0503 Asparaginase [Amino ac 20.6 1.6E+02 0.0035 26.1 4.2 37 51-90 120-156 (368)
237 PLN02327 CTP synthase 20.5 75 0.0016 29.7 2.2 38 49-87 359-396 (557)
238 cd06308 PBP1_sensor_kinase_lik 20.1 2.2E+02 0.0049 22.2 4.8 36 50-90 54-89 (270)
239 COG0655 WrbA Multimeric flavod 20.1 4E+02 0.0086 20.8 6.1 67 2-68 21-92 (207)
240 cd01635 Glycosyltransferase_GT 20.0 2.3E+02 0.0049 20.7 4.6 44 43-92 172-215 (229)
No 1
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=1.8e-44 Score=272.52 Aligned_cols=131 Identities=44% Similarity=0.768 Sum_probs=125.8
Q ss_pred ChHHHHHHHhcCCEEEEEeCCCccc-ccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcC
Q 031213 1 MGLVSHVVHRGGGHVLGIIPKTLMN-KEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG 79 (164)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~-~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg 79 (164)
|||+|+||+++||+|+||+|+.+.+ ++.+++.+++++++++|++||.+|+++|||||+||||+|||+|+|++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999998 777888889999999999999999999999999999999999999999999999
Q ss_pred CCCc-cEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHH
Q 031213 80 IHDK-PVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKL 131 (164)
Q Consensus 80 ~~~k-Pivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l 131 (164)
.++| |++|+|.+|||+++++++++|+++||+++++.+.+.+++|++|+++.|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 9877 999999999999999999999999999999999999999999999876
No 2
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=1.3e-43 Score=280.13 Aligned_cols=134 Identities=41% Similarity=0.796 Sum_probs=130.0
Q ss_pred ChHHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCC
Q 031213 1 MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGI 80 (164)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~ 80 (164)
|+|+|++|+++||+|+||+|..+..++.+++.+++++++++|++||.+|++.|||||+||||+|||||++++|+|.|+|.
T Consensus 45 M~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~ 124 (178)
T TIGR00730 45 MGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGI 124 (178)
T ss_pred HHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999888888888999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHhh
Q 031213 81 HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 134 (164)
Q Consensus 81 ~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (164)
|+||++++|.+|||+++++|+++|+++||+++++.+.+++++|++|++++|+++
T Consensus 125 ~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 125 HQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQVQNY 178 (178)
T ss_pred CCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999763
No 3
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=9.4e-35 Score=234.20 Aligned_cols=137 Identities=37% Similarity=0.666 Sum_probs=129.4
Q ss_pred ChHHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCC
Q 031213 1 MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGI 80 (164)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~ 80 (164)
|||+++||+++||.||||+|......+..+...++++++.+|++||..|+++|||||+||||+||+||+|++++|.|++.
T Consensus 59 Mea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~ 138 (205)
T COG1611 59 MEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGV 138 (205)
T ss_pred hhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCc
Confidence 99999999999999999999999876645555678889999999999999999999999999999999999999999999
Q ss_pred C--CccEEEEecCccchHHHHHHH-HHHHcCCCCccccCCeEEcCCHHHHHHHHHhhcCC
Q 031213 81 H--DKPVGLINVDGYYNSLLNFID-KAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPL 137 (164)
Q Consensus 81 ~--~kPivlln~~gfw~~l~~~l~-~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~~~~ 137 (164)
| .+|.++++.++||+++.++++ +++.++++++.+.+++.+++|++++++.+.++.+.
T Consensus 139 ~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 139 HALTPPPLILNGNGFWEPLLEFLDPHLIVEGLISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred ccCCCCcEEecchHHHHHHHHHhCHHHHHhhcCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 8 899989999999999999999 89999999999999999999999999999998765
No 4
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=99.97 E-value=1.1e-30 Score=203.09 Aligned_cols=115 Identities=24% Similarity=0.405 Sum_probs=96.8
Q ss_pred ChHHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCH-HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcC
Q 031213 1 MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADM-HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG 79 (164)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m-~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg 79 (164)
|++++++|+++||+|+||+|..+. ..+++.++.+..+| ++||++|++.|||||++|||+|||+|++++|++
T Consensus 43 M~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~---- 114 (159)
T TIGR00725 43 MEAVSKGAREAGGLVVGILPDEDF----AGNPYLTIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYAL---- 114 (159)
T ss_pred HHHHHHHHHHCCCeEEEECChhhc----cCCCCceEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHc----
Confidence 899999999999999999999874 23444455554554 999999999999999999999999999999984
Q ss_pred CCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHH
Q 031213 80 IHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKL 131 (164)
Q Consensus 80 ~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l 131 (164)
+||++++|.+|||+++++++ +.+.+|++ + .+.+++|++|+++++
T Consensus 115 --~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~---~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 115 --GGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E---RVIVEITPAEAVKLA 158 (159)
T ss_pred --CCCEEEEECCCcchHHHHHH--Hhcccccc-c---eeEecCCHHHHHHhh
Confidence 89999999999999988864 44444444 2 599999999999865
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=98.17 E-value=2.8e-05 Score=63.49 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=79.7
Q ss_pred hHHHHHHHhcCCEEEEEeCCCccc---ccc-------cCCc---cceEe-----ecCCHHHHHHHHHHhCCeEEEccCC-
Q 031213 2 GLVSHVVHRGGGHVLGIIPKTLMN---KEI-------TGET---VGEVK-----PVADMHQRKAEMARNSDCFIALPGG- 62 (164)
Q Consensus 2 gava~ga~~~GG~viGIiP~~~~~---~e~-------~~~~---~~el~-----i~~~m~~Rk~~m~~~sDafIvlPGG- 62 (164)
.++-++|+++||.+|+|+|..+.. .+- ..+. +++.. ....|..|++++...||++|++-.+
T Consensus 87 ~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~ 166 (220)
T TIGR00732 87 GIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPL 166 (220)
T ss_pred HHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCC
Confidence 467889999999999999998732 110 0001 11111 1236789999999999999999987
Q ss_pred -CcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHH
Q 031213 63 -YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQK 130 (164)
Q Consensus 63 -~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~ 130 (164)
.||+..+-.++.+ .||+..+-.. .+++.-+.-+.++++|- ....+++++++.
T Consensus 167 ~sGtl~ta~~A~~~------gr~v~~~pg~-~~~~~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 167 KSGALITARYALEQ------GREVFAYPGD-LNSPESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred CCchHHHHHHHHHh------CCcEEEEcCC-CCCccchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 6999999988866 8999998543 55555555567777763 345667777653
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=96.30 E-value=0.03 Score=45.32 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCEEEEEeCCCcc---ccccc--------CCc--cce-----EeecCCHHHHHHHHHHhCCeEEEcc--CC
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLM---NKEIT--------GET--VGE-----VKPVADMHQRKAEMARNSDCFIALP--GG 62 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~---~~e~~--------~~~--~~e-----l~i~~~m~~Rk~~m~~~sDafIvlP--GG 62 (164)
++-++|+++||++|+|+|..+. |.+.. .+. +++ -.....|.+|++++...||+.|+.- =.
T Consensus 88 ~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~ 167 (212)
T PF02481_consen 88 AAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEK 167 (212)
T ss_dssp HHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT
T ss_pred HHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCC
Confidence 5678999999999999999883 32210 101 011 1112367899999999999988875 45
Q ss_pred CcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcC
Q 031213 63 YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDG 108 (164)
Q Consensus 63 ~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~eg 108 (164)
-||+.-+-.++.+ .||+..+.. ..+++..+.-..++++|
T Consensus 168 sGt~~ta~~A~~~------gr~v~~vp~-~~~~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 168 SGTLHTARFALEQ------GRPVFAVPG-PIDDPNSEGNNELIKEG 206 (212)
T ss_dssp -THHHHHHHHHHH------T--EEE-----TT-GGGHHHHHHHHTT
T ss_pred ChHHHHHHHHHHc------CCeEEEEeC-CCCCcccHHHHHHHHcC
Confidence 6888877777766 799999744 36666666666777777
No 7
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.93 E-value=0.014 Score=42.08 Aligned_cols=47 Identities=34% Similarity=0.346 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHhCCeEEEccCC----CcCHHHHHHHHHHHHcCCCCccEEEEecC
Q 031213 39 VADMHQRKAEMARNSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLINVD 91 (164)
Q Consensus 39 ~~~m~~Rk~~m~~~sDafIvlPGG----~GTLdEl~e~~t~~qlg~~~kPivlln~~ 91 (164)
....++|....++.||++|+...| .||.-|+..+..+ .|||+++..+
T Consensus 48 ~~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 48 AREIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 345688889999999998887776 9999999999887 8999999765
No 8
>PRK10736 hypothetical protein; Provisional
Probab=94.86 E-value=0.43 Score=42.11 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=76.4
Q ss_pred HHHHHHhcCCEEEEEeCCCccc---cc-------c-cCC--ccceEee-----cCCHHHHHHHHHHhCCeEEEccC--CC
Q 031213 4 VSHVVHRGGGHVLGIIPKTLMN---KE-------I-TGE--TVGEVKP-----VADMHQRKAEMARNSDCFIALPG--GY 63 (164)
Q Consensus 4 va~ga~~~GG~viGIiP~~~~~---~e-------~-~~~--~~~el~i-----~~~m~~Rk~~m~~~sDafIvlPG--G~ 63 (164)
+=++|+++||++|+|++..+.. ++ . ..+ -++|... ..+|..|++++.-.|+++||.=- -.
T Consensus 152 AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kS 231 (374)
T PRK10736 152 AHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRS 231 (374)
T ss_pred HHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCC
Confidence 3467899999999999988742 21 0 000 0111111 24789999999999999888743 45
Q ss_pred cCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHh
Q 031213 64 GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEE 133 (164)
Q Consensus 64 GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~ 133 (164)
|||.=.-.++.. .|+|..+-. ...++.-+-.++++.+|- ..+.+++++++.+..
T Consensus 232 GsliTA~~Al~~------gR~VfavPG-~i~~~~s~G~n~LI~~GA---------~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 232 GSLVTARCALEQ------GRDVFALPG-PIGNPGSEGPHWLIKQGA---------YLVTSPEDILENLQF 285 (374)
T ss_pred chHHHHHHHHHh------CCeEEEEcC-CCCCccchhHHHHHHCCC---------EEeCCHHHHHHHhhh
Confidence 677666655544 899998843 255555555667777763 567788888888853
No 9
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=91.99 E-value=1.4 Score=36.39 Aligned_cols=71 Identities=28% Similarity=0.346 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcC-
Q 031213 44 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP- 122 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~- 122 (164)
..-.-++..||++|.- ||++|+.|+... .||++++-..++++.... .+.+.+.|.. ...+
T Consensus 242 ~~~~~~m~~ad~vIs~-~G~~t~~Ea~~~---------g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~--------~~~~~ 302 (318)
T PF13528_consen 242 PDFAELMAAADLVISK-GGYTTISEALAL---------GKPALVIPRPGQDEQEYN-ARKLEELGLG--------IVLSQ 302 (318)
T ss_pred HHHHHHHHhCCEEEEC-CCHHHHHHHHHc---------CCCEEEEeCCCCchHHHH-HHHHHHCCCe--------EEccc
Confidence 3344457889977766 889998887743 899999987666665332 1345555542 3322
Q ss_pred ---CHHHHHHHHHh
Q 031213 123 ---NAKELVQKLEE 133 (164)
Q Consensus 123 ---~~ee~~~~l~~ 133 (164)
+++.+.++|++
T Consensus 303 ~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 303 EDLTPERLAEFLER 316 (318)
T ss_pred ccCCHHHHHHHHhc
Confidence 67888888775
No 10
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.70 E-value=2.6 Score=32.20 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCEEEEEeCCCccccc----------ccCCccceEeecCCH-HHHHHHHHHhCCeEEEccCCC-cCHHHHH
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKE----------ITGETVGEVKPVADM-HQRKAEMARNSDCFIALPGGY-GTLEELL 70 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e----------~~~~~~~el~i~~~m-~~Rk~~m~~~sDafIvlPGG~-GTLdEl~ 70 (164)
.+.++|.+.|=.|.-.-|-...+.. .+++.+-|.. ...+ ..|.+.+++.||.+|+.-|-- ---+-.|
T Consensus 13 ~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k-~a~iN~iRT~~li~~aDvVVvrFGekYKQWNaAf 91 (141)
T PF11071_consen 13 EIKEGAKAAGLPVEFTSPVTDHEASDDCGVDILGEEPNKFWRDHK-GAKINAIRTRTLIEKADVVVVRFGEKYKQWNAAF 91 (141)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhhhhhhHHHhCCCCccccccch-hhhhhHHHHHHHHhhCCEEEEEechHHHHHHHHh
Confidence 4566777777777766666554321 1111122222 2233 678889999999999988831 1111111
Q ss_pred HHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHh
Q 031213 71 EVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEE 133 (164)
Q Consensus 71 e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~ 133 (164)
.+-.-. ...||+|++-....--+|.+. +.....++.+|+++++.|+-
T Consensus 92 DAg~a~---AlgKplI~lh~~~~~HpLKEv-------------da~A~a~~et~~Qvv~iL~Y 138 (141)
T PF11071_consen 92 DAGYAA---ALGKPLITLHPEELHHPLKEV-------------DAAALAVAETPEQVVEILRY 138 (141)
T ss_pred hHHHHH---HcCCCeEEecchhccccHHHH-------------hHhhHhhhCCHHHHHHHHHH
Confidence 111110 138999999877665565553 22335779999999998853
No 11
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=89.56 E-value=1.5 Score=38.46 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCEEEEEeCCCcc---cccc--------cCC-ccce----Eee-cCCHHHHHHHHHHhCCeEEEccCC--C
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLM---NKEI--------TGE-TVGE----VKP-VADMHQRKAEMARNSDCFIALPGG--Y 63 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~---~~e~--------~~~-~~~e----l~i-~~~m~~Rk~~m~~~sDafIvlPGG--~ 63 (164)
++-++++++||++|+|+...+. |++- .+. -++| ... ..+|..|+++..-.|++++|.=.+ .
T Consensus 155 ~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kS 234 (350)
T COG0758 155 EAHKAALNAGGKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKS 234 (350)
T ss_pred HHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCccc
Confidence 4567899999999999988874 2220 011 0111 111 348899999999999999998766 4
Q ss_pred cCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHh
Q 031213 64 GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEE 133 (164)
Q Consensus 64 GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~ 133 (164)
|+|.=.-.++.. .+.|+.+-.+ ..++.-+-...++++|- ..+.+.+++++.+..
T Consensus 235 GSLiTA~~Aleq------gR~VfavPg~-~~~~~s~G~~~LI~~GA---------~lv~~~~dil~~l~~ 288 (350)
T COG0758 235 GSLITAKYALEQ------GRDVFAVPGS-IDNPRSEGCNKLIKEGA---------KLVTSAEDILEELNA 288 (350)
T ss_pred ccHHHHHHHHHc------CCeeEEcCCC-cccccccchHHHHHccc---------hhcccHHHHHHHhhh
Confidence 776666655544 6677666443 33332233345666652 233444555555543
No 12
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=87.93 E-value=1.1 Score=33.83 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=30.7
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccch-HHHHHHHHHHHcCC
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN-SLLNFIDKAVDDGF 109 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~-~l~~~l~~~~~egf 109 (164)
...+++.|| +|+--||.||+.|+... .+|.|++-..+..+ .-...-..+.+.|.
T Consensus 66 m~~~m~~aD-lvIs~aG~~Ti~E~l~~---------g~P~I~ip~~~~~~~~q~~na~~~~~~g~ 120 (167)
T PF04101_consen 66 MAELMAAAD-LVISHAGAGTIAEALAL---------GKPAIVIPLPGAADNHQEENAKELAKKGA 120 (167)
T ss_dssp HHHHHHHHS-EEEECS-CHHHHHHHHC---------T--EEEE--TTT-T-CHHHHHHHHHHCCC
T ss_pred HHHHHHHcC-EEEeCCCccHHHHHHHc---------CCCeeccCCCCcchHHHHHHHHHHHHcCC
Confidence 356788899 77778899999888743 89999875433221 22222234566554
No 13
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=87.93 E-value=3.5 Score=35.03 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 41 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
++.+....++..||++|.-+||. |+ +|++.. .+|+|+++..+.... +..+.+.+.|+ .+.
T Consensus 262 g~~~~~~~l~~~aD~~v~~~gg~-t~---~EA~a~------g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~ 321 (380)
T PRK13609 262 GYVENIDELFRVTSCMITKPGGI-TL---SEAAAL------GVPVILYKPVPGQEK--ENAMYFERKGA--------AVV 321 (380)
T ss_pred echhhHHHHHHhccEEEeCCCch-HH---HHHHHh------CCCEEECCCCCCcch--HHHHHHHhCCc--------EEE
Confidence 33344556788999988766653 54 455554 899998764222211 11223344444 345
Q ss_pred cCCHHHHHHHHHhhcC
Q 031213 121 APNAKELVQKLEEYVP 136 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~~ 136 (164)
..|++++.+.|.+...
T Consensus 322 ~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 322 IRDDEEVFAKTEALLQ 337 (380)
T ss_pred ECCHHHHHHHHHHHHC
Confidence 6788888888876643
No 14
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=86.42 E-value=6.2 Score=30.23 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCEEEEEeCCCccccc----------ccCCccceEeecCCH-HHHHHHHHHhCCeEEEccCCC-cCHHHHH
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKE----------ITGETVGEVKPVADM-HQRKAEMARNSDCFIALPGGY-GTLEELL 70 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e----------~~~~~~~el~i~~~m-~~Rk~~m~~~sDafIvlPGG~-GTLdEl~ 70 (164)
.+.+||.+.|=.|.-.-|-...+.. .+++..-|.. ...+ ..|-+.+++.||.+|+.-|-- ---+-.|
T Consensus 16 ~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k-~a~iNaiRT~~li~~aDvvVvrFGekYKQWNaAf 94 (144)
T TIGR03646 16 EIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDDA-AASINNIRTRKLIEKADVVIALFGEKYKQWNAAF 94 (144)
T ss_pred HHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCcccccccc-ccchhhHHHHHHHhhCCEEEEEechHHHHHHHHh
Confidence 4567777777777766665554321 0111111221 2233 578888999999999988731 1111112
Q ss_pred HHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHH
Q 031213 71 EVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLE 132 (164)
Q Consensus 71 e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~ 132 (164)
.+-... ...||+|++-....--+|.+. + .....++.+|+.+++.|+
T Consensus 95 DAg~aa---AlgKplI~lh~~~~~HpLKEv-d------------aaA~avaetp~Qvv~iL~ 140 (144)
T TIGR03646 95 DAGYAA---ALGKPLIILRPEELIHPLKEV-D------------NKAQAVVETPEQAIETLK 140 (144)
T ss_pred hHHHHH---HcCCCeEEecchhccccHHHH-h------------HHHHHHhcCHHHHHHHHH
Confidence 111110 138999999876555555553 2 223467899999999885
No 15
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=86.35 E-value=3.3 Score=35.82 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 42 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 42 m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
+.++-..++..||.+|.=|||. |+. |++.. .+|+++.+..+- +.... ...+.+.|+ -..+
T Consensus 263 ~~~~~~~~~~~aDl~I~k~gg~-tl~---EA~a~------G~PvI~~~~~pg-qe~~N-~~~~~~~G~--------g~~~ 322 (391)
T PRK13608 263 YTKHMNEWMASSQLMITKPGGI-TIS---EGLAR------CIPMIFLNPAPG-QELEN-ALYFEEKGF--------GKIA 322 (391)
T ss_pred ccchHHHHHHhhhEEEeCCchH-HHH---HHHHh------CCCEEECCCCCC-cchhH-HHHHHhCCc--------EEEe
Confidence 3345567789999999878775 644 44544 899999874321 11111 122334443 3446
Q ss_pred CCHHHHHHHHHhhc
Q 031213 122 PNAKELVQKLEEYV 135 (164)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (164)
+|++++.+.+.+..
T Consensus 323 ~~~~~l~~~i~~ll 336 (391)
T PRK13608 323 DTPEEAIKIVASLT 336 (391)
T ss_pred CCHHHHHHHHHHHh
Confidence 78888888777654
No 16
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=84.12 E-value=5.9 Score=31.43 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCeEEEccCC------CcCHHHHHHHHHHHHcCCCCccEEEEecCc--cchHHHHHHHHHHHc
Q 031213 42 MHQRKAEMARNSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLINVDG--YYNSLLNFIDKAVDD 107 (164)
Q Consensus 42 m~~Rk~~m~~~sDafIvlPGG------~GTLdEl~e~~t~~qlg~~~kPivlln~~g--fw~~l~~~l~~~~~e 107 (164)
+.+=..-++++||++|+.-=+ .||.-|+-.++.+ .||++.+..+. +...+-..+.....+
T Consensus 58 i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d~~~~~~r~~~~~~~~l~~ 125 (172)
T COG3613 58 IYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKDAANYASRLNAHLGEVLGE 125 (172)
T ss_pred HHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeecccchhhHHHHhHHHHhhc
Confidence 344445678999998888766 5899999999987 89999887642 334443433333333
No 17
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=82.87 E-value=5 Score=34.43 Aligned_cols=73 Identities=23% Similarity=0.310 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCC
Q 031213 44 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 123 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~ 123 (164)
+....++..||++|.-+|| +|+.| ++.. .+|+|+.+.-. .+.. .-.+.+.+.|. -..+.|
T Consensus 274 ~~~~~l~~aaDv~V~~~g~-~ti~E---Ama~------g~PvI~~~~~p-gqe~-gn~~~i~~~g~--------g~~~~~ 333 (382)
T PLN02605 274 TNMEEWMGACDCIITKAGP-GTIAE---ALIR------GLPIILNGYIP-GQEE-GNVPYVVDNGF--------GAFSES 333 (382)
T ss_pred ccHHHHHHhCCEEEECCCc-chHHH---HHHc------CCCEEEecCCC-ccch-hhHHHHHhCCc--------eeecCC
Confidence 3455678999999976654 68655 4443 89999987421 1111 01123333332 224589
Q ss_pred HHHHHHHHHhhcC
Q 031213 124 AKELVQKLEEYVP 136 (164)
Q Consensus 124 ~ee~~~~l~~~~~ 136 (164)
++++.+.+.+...
T Consensus 334 ~~~la~~i~~ll~ 346 (382)
T PLN02605 334 PKEIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHHHc
Confidence 9999988887643
No 18
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=82.44 E-value=11 Score=32.29 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=41.4
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE-cCCHHH
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS-APNAKE 126 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~-~~~~ee 126 (164)
.++..||++| ..||.||+.|.... .+|++++-.. ..+.. +.+.+.+.|.- ..+.. .-++++
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Eal~~---------G~P~v~~p~~-~dq~~--~a~~l~~~g~g-----~~l~~~~~~~~~ 348 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEALFN---------GVPMVAVPQG-ADQPM--TARRIAELGLG-----RHLPPEEVTAEK 348 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHHHHh---------CCCEEecCCc-ccHHH--HHHHHHHCCCE-----EEeccccCCHHH
Confidence 4567888554 68899998887633 8999998532 22222 33445554421 01111 225677
Q ss_pred HHHHHHhhcC
Q 031213 127 LVQKLEEYVP 136 (164)
Q Consensus 127 ~~~~l~~~~~ 136 (164)
+.+.+.+...
T Consensus 349 l~~ai~~~l~ 358 (392)
T TIGR01426 349 LREAVLAVLS 358 (392)
T ss_pred HHHHHHHHhc
Confidence 7777766543
No 19
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=82.12 E-value=21 Score=27.55 Aligned_cols=82 Identities=22% Similarity=0.181 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCEEEEEeCCCccccc-ccCCccceEe-ecCCHHHHHHHHHHhCCeEEEcc-CCC--cCHHHHHHHHHHHH
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKE-ITGETVGEVK-PVADMHQRKAEMARNSDCFIALP-GGY--GTLEELLEVITWAQ 77 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e-~~~~~~~el~-i~~~m~~Rk~~m~~~sDafIvlP-GG~--GTLdEl~e~~t~~q 77 (164)
|+-+.|+++|=..=|-.|......+ .-+..|.-.. ...+...|.+..++.||+-++|- |-. || ++...++
T Consensus 12 AALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt--~lT~~~a--- 86 (145)
T PF12694_consen 12 AALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT--ALTVEFA--- 86 (145)
T ss_dssp HHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH--HHHHHHH---
T ss_pred HHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH--HHHHHHH---
Confidence 5667788888888888888875543 2233343222 25788999999999999955554 332 34 3333232
Q ss_pred cCCCCccEEEEec
Q 031213 78 LGIHDKPVGLINV 90 (164)
Q Consensus 78 lg~~~kPivlln~ 90 (164)
..|.||+.+++.
T Consensus 87 -~~~~KP~l~i~~ 98 (145)
T PF12694_consen 87 -RKHGKPCLHIDL 98 (145)
T ss_dssp -HHTT--EEEETS
T ss_pred -HHhCCCEEEEec
Confidence 357999999854
No 20
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=76.73 E-value=37 Score=28.82 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHH
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 127 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~ 127 (164)
.++..+|+|| --||.||+.|... +.+|++++-. +.|. ..+.+.+.+.|.-..-... .-+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~~P~--~~dQ-~~~a~~~~~~G~g~~l~~~----~~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLVVPF--FGDQ-PFWAARVAELGAGPALDPR----ELTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEeeCC--CCCc-HHHHHHHHHCCCCCCCCcc----cCCHHHH
Confidence 4567788776 6777899888773 3899999853 3332 2233556666632111111 1267777
Q ss_pred HHHHHhhcC
Q 031213 128 VQKLEEYVP 136 (164)
Q Consensus 128 ~~~l~~~~~ 136 (164)
.+.+++...
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 777766543
No 21
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.58 E-value=29 Score=28.61 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCcc-chHHHHHHHHHHHcCCCCccccCCeE
Q 031213 41 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY-YNSLLNFIDKAVDDGFISPSQRSILV 119 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gf-w~~l~~~l~~~~~egfi~~~~~~~i~ 119 (164)
++.+....++..||++|. ++|.+| +.|++++ .+|++.....+. .+.-....+.+.+.| ...++
T Consensus 241 g~~~~~~~~l~~ad~~v~-~sg~~t---~~Eam~~------G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v 304 (350)
T cd03785 241 PFIDDMAAAYAAADLVIS-RAGAST---VAELAAL------GLPAILIPLPYAADDHQTANARALVKAG------AAVLI 304 (350)
T ss_pred ehhhhHHHHHHhcCEEEE-CCCHhH---HHHHHHh------CCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEE
Confidence 333555667889999886 555456 4555554 899998754321 111000012233322 11122
Q ss_pred EcC--CHHHHHHHHHhhcC
Q 031213 120 SAP--NAKELVQKLEEYVP 136 (164)
Q Consensus 120 ~~~--~~ee~~~~l~~~~~ 136 (164)
-.+ |++++.+.|.+...
T Consensus 305 ~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 305 PQEELTPERLAAALLELLS 323 (350)
T ss_pred ecCCCCHHHHHHHHHHHhc
Confidence 222 78999888877643
No 22
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=73.25 E-value=5.6 Score=33.04 Aligned_cols=39 Identities=23% Similarity=0.115 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 41 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
........++..||.+|. +|| +|+-|+... .+|++++-.
T Consensus 230 ~~~~~m~~lm~~aDl~Is-~~G-~T~~E~~a~---------g~P~i~i~~ 268 (279)
T TIGR03590 230 IDVENMAELMNEADLAIG-AAG-STSWERCCL---------GLPSLAICL 268 (279)
T ss_pred eCHHHHHHHHHHCCEEEE-CCc-hHHHHHHHc---------CCCEEEEEe
Confidence 334556677899998888 666 897776633 899998864
No 23
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=73.20 E-value=21 Score=29.42 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=40.1
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcC--C
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP--N 123 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~--~ 123 (164)
-.-++..||++|. ++|..|+-|.+ .. .+|+|..+..+.-.......+.+.+. ....++-.. +
T Consensus 244 ~~~~l~~ad~~v~-~~g~~~l~Ea~---~~------g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~ 307 (348)
T TIGR01133 244 MAAAYAAADLVIS-RAGASTVAELA---AA------GVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELL 307 (348)
T ss_pred HHHHHHhCCEEEE-CCChhHHHHHH---Hc------CCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCC
Confidence 3457889998886 55545555544 33 89999987543211111001112221 112222233 4
Q ss_pred HHHHHHHHHhhcC
Q 031213 124 AKELVQKLEEYVP 136 (164)
Q Consensus 124 ~ee~~~~l~~~~~ 136 (164)
++++.+.|.+...
T Consensus 308 ~~~l~~~i~~ll~ 320 (348)
T TIGR01133 308 PEKLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888877653
No 24
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=73.12 E-value=14 Score=31.62 Aligned_cols=77 Identities=13% Similarity=0.230 Sum_probs=52.1
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccC--C-----eEE
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRS--I-----LVS 120 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~--~-----i~~ 120 (164)
-++..||+|+|-+-++-=+.|.. + ..||+.++...+--+.+..+++.|.++|.+.+-... . +.-
T Consensus 224 ~~La~ad~i~VT~DSvSMvsEA~---~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~p 294 (311)
T PF06258_consen 224 GFLAAADAIVVTEDSVSMVSEAA---A------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEP 294 (311)
T ss_pred HHHHhCCEEEEcCccHHHHHHHH---H------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCC
Confidence 47889999999888766655544 2 279999999887555677778889999987554322 1 223
Q ss_pred cCCHHHHHHHHHh
Q 031213 121 APNAKELVQKLEE 133 (164)
Q Consensus 121 ~~~~ee~~~~l~~ 133 (164)
.++.+.+.+.|.+
T Consensus 295 l~et~r~A~~i~~ 307 (311)
T PF06258_consen 295 LDETDRVAAEIRE 307 (311)
T ss_pred ccHHHHHHHHHHH
Confidence 3445555555543
No 25
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=72.95 E-value=26 Score=29.23 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCc--cchHHHHHHHHHHHcCCCCccccC
Q 031213 39 VADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG--YYNSLLNFIDKAVDDGFISPSQRS 116 (164)
Q Consensus 39 ~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~g--fw~~l~~~l~~~~~egfi~~~~~~ 116 (164)
+.++.+.-..++..||++|. ++|.+|+- |++.. .+|+|.....+ ..+... ..+.+.+.| ..
T Consensus 239 ~~g~~~~~~~~~~~~d~~i~-~~g~~~~~---Ea~~~------g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~g 301 (357)
T PRK00726 239 VVPFIDDMAAAYAAADLVIC-RAGASTVA---ELAAA------GLPAILVPLPHAADDHQTA-NARALVDAG------AA 301 (357)
T ss_pred EeehHhhHHHHHHhCCEEEE-CCCHHHHH---HHHHh------CCCEEEecCCCCCcCcHHH-HHHHHHHCC------CE
Confidence 34444555678899999886 55556644 44544 89999886421 111110 112233333 12
Q ss_pred CeEEcCC--HHHHHHHHHhhcC
Q 031213 117 ILVSAPN--AKELVQKLEEYVP 136 (164)
Q Consensus 117 ~i~~~~~--~ee~~~~l~~~~~ 136 (164)
.+.-.+| ++++.+.|++...
T Consensus 302 ~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 302 LLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred EEEEcccCCHHHHHHHHHHHHc
Confidence 2233344 8999988887654
No 26
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=71.95 E-value=31 Score=30.14 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=51.3
Q ss_pred eecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccc-h-HHHHHHHHHHHcCCCCccc
Q 031213 37 KPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY-N-SLLNFIDKAVDDGFISPSQ 114 (164)
Q Consensus 37 ~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw-~-~l~~~l~~~~~egfi~~~~ 114 (164)
..+..|.+.....+..||.+|.=+ |..|+.|++.+ .+|.+++-.. ++ + +=..-.+.+.+.|.-
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsRa-Ga~Ti~E~~a~---------g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa---- 301 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISRA-GALTIAELLAL---------GVPAILVPYP-PGADGHQEYNAKFLEKAGAA---- 301 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeCC-cccHHHHHHHh---------CCCEEEeCCC-CCccchHHHHHHHHHhCCCE----
Confidence 446677777788899999666555 56899998854 8999999653 66 2 211122345555532
Q ss_pred cCCeEEcC--CHHHHHHHHHhhcC
Q 031213 115 RSILVSAP--NAKELVQKLEEYVP 136 (164)
Q Consensus 115 ~~~i~~~~--~~ee~~~~l~~~~~ 136 (164)
.+.--+ +++++.+.|.+...
T Consensus 302 --~~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 302 --LVIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred --EEeccccCCHHHHHHHHHHHhc
Confidence 111111 36678777776644
No 27
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=71.11 E-value=23 Score=26.75 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=37.6
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHH--------------HHHHHHHHHcCCCCccccCC
Q 031213 52 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSL--------------LNFIDKAVDDGFISPSQRSI 117 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l--------------~~~l~~~~~egfi~~~~~~~ 117 (164)
...++++.--|++--.+++++..- .... ||||++... -.+.= .+.++.+. ..--
T Consensus 54 ~t~~I~ly~E~~~d~~~f~~~~~~--a~~~-KPVv~lk~G-rt~~g~~aa~sHTgslag~~~~~~a~~--------~~aG 121 (138)
T PF13607_consen 54 DTRVIVLYLEGIGDGRRFLEAARR--AARR-KPVVVLKAG-RTEAGARAAASHTGSLAGDDAVYDAAL--------RQAG 121 (138)
T ss_dssp S--EEEEEES--S-HHHHHHHHHH--HCCC-S-EEEEE----------------------HHHHHHHH--------HHCT
T ss_pred CCCEEEEEccCCCCHHHHHHHHHH--HhcC-CCEEEEeCC-CchhhhhhhhccCCcccCcHHHHHHHH--------HHcC
Confidence 467889999999999999988753 3334 999999763 21110 00111111 1234
Q ss_pred eEEcCCHHHHHHHHH
Q 031213 118 LVSAPNAKELVQKLE 132 (164)
Q Consensus 118 i~~~~~~ee~~~~l~ 132 (164)
++.++|.+|+++..+
T Consensus 122 v~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 122 VVRVDDLDELLDAAK 136 (138)
T ss_dssp EEEESSHHHHHHHHC
T ss_pred ceEECCHHHHHHHHH
Confidence 788999999998764
No 28
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=67.70 E-value=30 Score=28.92 Aligned_cols=46 Identities=33% Similarity=0.631 Sum_probs=30.1
Q ss_pred EccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHH-----HHHHHHHcC
Q 031213 58 ALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDG 108 (164)
Q Consensus 58 vlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~-----~l~~~~~eg 108 (164)
+|-.|+ |++.+++.+.-.+ ..++.|++++ +||+++.+ |++.+.+.|
T Consensus 69 AL~~g~-~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 69 ALKQGI-NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred HHHcCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 344555 4777777765544 3467898877 48887655 566676655
No 29
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=67.62 E-value=9.8 Score=30.26 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=53.6
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHH-------HHcCCCCccEEEEecCccchH--HHHHHHHHHHcCCC-CccccCCeEEc
Q 031213 52 NSDCFIALPGGYGTLEELLEVITW-------AQLGIHDKPVGLINVDGYYNS--LLNFIDKAVDDGFI-SPSQRSILVSA 121 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~-------~qlg~~~kPivlln~~gfw~~--l~~~l~~~~~egfi-~~~~~~~i~~~ 121 (164)
.+|++|+.|=..+|+.-+..=++- ...-..++|++++-.+ .|.. .++.++.+.+.|+. -+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~-M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRE-TPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEecc-ccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 589999999999999877532221 1111257999998754 6653 34456777887853 33344455556
Q ss_pred CCHHHHHHHHH
Q 031213 122 PNAKELVQKLE 132 (164)
Q Consensus 122 ~~~ee~~~~l~ 132 (164)
.+.+++++++.
T Consensus 157 ~~~~~~~~~~v 167 (185)
T PRK06029 157 QTLEDMVDQTV 167 (185)
T ss_pred CCHHHHHHHHH
Confidence 89999999984
No 30
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=67.54 E-value=24 Score=27.82 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=55.3
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHH------HHHcCCCCccEEEEec--CccchH--HHHHHHHHHHcCC--CCccccC
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVIT------WAQLGIHDKPVGLINV--DGYYNS--LLNFIDKAVDDGF--ISPSQRS 116 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t------~~qlg~~~kPivlln~--~gfw~~--l~~~l~~~~~egf--i~~~~~~ 116 (164)
+.+.+|++|+.|=..+|+.-+..=++ ...--..++|++++-. ...|.. .++.++++.+.|+ +++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 44679999999999999987653221 1111124799998753 135554 3445677888774 3443211
Q ss_pred ------CeEEcCCHHHHHHHHHhhcC
Q 031213 117 ------ILVSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 117 ------~i~~~~~~ee~~~~l~~~~~ 136 (164)
-..=-.+++++++++.++..
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 13446788999999987643
No 31
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=67.10 E-value=23 Score=29.44 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcC
Q 031213 43 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 122 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~ 122 (164)
.+....++..||.||.=+| |..+|.+ . ..+|++.++..+-+.. .++.|. .+.+.+
T Consensus 268 ~~~~~~l~~~ad~~v~~Sg--gi~~Ea~---~------~g~PvI~~~~~~~~~~-------~~~~g~-------~~~~~~ 322 (363)
T cd03786 268 YLYFLLLLKNADLVLTDSG--GIQEEAS---F------LGVPVLNLRDRTERPE-------TVESGT-------NVLVGT 322 (363)
T ss_pred HHHHHHHHHcCcEEEEcCc--cHHhhhh---h------cCCCEEeeCCCCccch-------hhheee-------EEecCC
Confidence 4556677888998885554 5444443 2 2799999864332221 223332 123345
Q ss_pred CHHHHHHHHHhhcCC
Q 031213 123 NAKELVQKLEEYVPL 137 (164)
Q Consensus 123 ~~ee~~~~l~~~~~~ 137 (164)
+++++.+.+.+....
T Consensus 323 ~~~~i~~~i~~ll~~ 337 (363)
T cd03786 323 DPEAILAAIEKLLSD 337 (363)
T ss_pred CHHHHHHHHHHHhcC
Confidence 789999989886543
No 32
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=66.64 E-value=12 Score=29.54 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=52.1
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHH-----H-H-HcCCCCccEEEEecCccchHH-HHHHHHHHHcCCC-CccccCCeEEc
Q 031213 51 RNSDCFIALPGGYGTLEELLEVIT-----W-A-QLGIHDKPVGLINVDGYYNSL-LNFIDKAVDDGFI-SPSQRSILVSA 121 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t-----~-~-qlg~~~kPivlln~~gfw~~l-~~~l~~~~~egfi-~~~~~~~i~~~ 121 (164)
..+|++|+.|=..+|+.-+..=++ - . ..-..++|+++.=.+-+..+. ++-++.+.+.|+. -+.....+.--
T Consensus 74 ~~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~~~~p 153 (181)
T TIGR00421 74 FPFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPMPAFYTRP 153 (181)
T ss_pred chhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCCCcccCCC
Confidence 358999999999999988763222 0 0 111247899998654343332 3335667777742 23333445556
Q ss_pred CCHHHHHHHHHh
Q 031213 122 PNAKELVQKLEE 133 (164)
Q Consensus 122 ~~~ee~~~~l~~ 133 (164)
.+++|+++++..
T Consensus 154 ~~~~~~~~~i~~ 165 (181)
T TIGR00421 154 KSVEDMIDFIVG 165 (181)
T ss_pred CCHHHHHHHHHH
Confidence 889998888754
No 33
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=65.79 E-value=49 Score=28.56 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=43.6
Q ss_pred HHHHHHHhCCeEEEcc---CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 45 RKAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 45 Rk~~m~~~sDafIvlP---GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
....+...||.+++.| .|.|.- +.|++.. .+|+|.-...+-+..+.+ .+.+.|+ ++.+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~~~~e~~~---~~~~~g~--------~~~~ 372 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTFNFKEIFE---RLLQAGA--------AIQV 372 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCccCHHHHHH---HHHHCCC--------eEEE
Confidence 3456678899866642 233442 6777776 899997432222333333 3333343 4557
Q ss_pred CCHHHHHHHHHhhcC
Q 031213 122 PNAKELVQKLEEYVP 136 (164)
Q Consensus 122 ~~~ee~~~~l~~~~~ 136 (164)
+|++++.+.|.+...
T Consensus 373 ~d~~~La~~l~~ll~ 387 (425)
T PRK05749 373 EDAEDLAKAVTYLLT 387 (425)
T ss_pred CCHHHHHHHHHHHhc
Confidence 889999888877643
No 34
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=65.53 E-value=22 Score=29.72 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCC
Q 031213 44 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGF 109 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egf 109 (164)
+.-.-++..||++|.- ||.+|+.|.. . +.+|++++...+.++.... .+.+.+.|.
T Consensus 239 ~~~~~~l~~ad~vI~~-~G~~t~~Ea~---~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 239 DNFKELIKNAELVITH-GGFSLISEAL---S------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHHHHHHhCCEEEEC-CChHHHHHHH---H------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 4556678889977765 6778876654 2 3899999886655554322 244566554
No 35
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.65 E-value=42 Score=27.15 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCeEEEcc----CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCe
Q 031213 43 HQRKAEMARNSDCFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSIL 118 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlP----GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i 118 (164)
.+....+...||++|... .|+|. =+.|+++. .+|++..+..+..+.+.. + .....+
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~~------g~Pvi~~~~~~~~~~i~~-------~-----~~~g~~ 313 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGI--VLLEAMAF------GKPVISTEIGTGGSYVNL-------H-----GVTGLV 313 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccch--HHHHHHHc------CCCEEecCCCCchhHHhh-------C-----CCceEE
Confidence 455677888999987642 56665 36677754 899998876543332211 0 112223
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 031213 119 VSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 119 ~~~~~~ee~~~~l~~~~~ 136 (164)
+-.+|++++.+.|.+...
T Consensus 314 ~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 314 VPPGDPAALAEAIRRLLE 331 (357)
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 445789999998877643
No 36
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=64.21 E-value=19 Score=28.37 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=32.3
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHH-HHHHHcCCC
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI-DKAVDDGFI 110 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l-~~~~~egfi 110 (164)
--++.|| .|+=-+|.||.-| .+.+ .||.+++-.+..-|.-...| +++.++|++
T Consensus 76 e~I~~Ad-lVIsHAGaGS~le---tL~l------~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 76 EDIRSAD-LVISHAGAGSCLE---TLRL------GKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred HHHhhcc-EEEecCCcchHHH---HHHc------CCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 3355577 5566788999544 4433 79988764433444333333 578888874
No 37
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=64.05 E-value=12 Score=32.55 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=46.0
Q ss_pred EEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCeEEcCC-HHHHHHHHHh
Q 031213 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSILVSAPN-AKELVQKLEE 133 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i~~~~~-~ee~~~~l~~ 133 (164)
-|+|-||.|| -+.-. +...+||++=+.. .|++++ |+.+.+.|+ .+.+..+.- .+.+.+++.+
T Consensus 4 avILagG~Gt--RLrPl-----T~~~PKPllpI~g----kPii~~~l~~L~~~Gv-----~eivi~~~y~~~~i~~~~~d 67 (358)
T COG1208 4 AVILAGGYGT--RLRPL-----TDDRPKPLLPIAG----KPLIEYVLEALAAAGV-----EEIVLVVGYLGEQIEEYFGD 67 (358)
T ss_pred EEEEeCCccc--ccccc-----ccCCCcccceeCC----ccHHHHHHHHHHHCCC-----cEEEEEeccchHHHHHHHhc
Confidence 4789999999 11110 1235888886653 566665 456766665 333444333 4555555544
Q ss_pred hcCCCCCccccceeccccccccc
Q 031213 134 YVPLHDGVVAKVKWEAEQVELNT 156 (164)
Q Consensus 134 ~~~~~~~~~~~~~w~~~~~~~~~ 156 (164)
... .....+|..+..++||
T Consensus 68 ~~~----~~~~I~y~~e~~~lGT 86 (358)
T COG1208 68 GEG----LGVRITYVVEKEPLGT 86 (358)
T ss_pred ccc----cCCceEEEecCCcCcc
Confidence 211 1235678877777776
No 38
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=63.64 E-value=25 Score=29.38 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=42.8
Q ss_pred HHHHHHhCCeEEEc--cCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCC
Q 031213 46 KAEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 123 (164)
Q Consensus 46 k~~m~~~sDafIvl--PGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~ 123 (164)
...++..||++|.. ..|+|. =++|++.. .+|+|.-+..| ...++ .+| ....++-.+|
T Consensus 266 ~~~~~~~adi~v~pS~~Eg~~~--~~lEAma~------G~Pvv~s~~~g-~~e~i-------~~~-----~~g~~~~~~d 324 (374)
T TIGR03088 266 VPALMQALDLFVLPSLAEGISN--TILEAMAS------GLPVIATAVGG-NPELV-------QHG-----VTGALVPPGD 324 (374)
T ss_pred HHHHHHhcCEEEeccccccCch--HHHHHHHc------CCCEEEcCCCC-cHHHh-------cCC-----CceEEeCCCC
Confidence 34567889987742 356665 37777765 89999987643 33222 121 2233444578
Q ss_pred HHHHHHHHHhhc
Q 031213 124 AKELVQKLEEYV 135 (164)
Q Consensus 124 ~ee~~~~l~~~~ 135 (164)
++++.+.|.+..
T Consensus 325 ~~~la~~i~~l~ 336 (374)
T TIGR03088 325 AVALARALQPYV 336 (374)
T ss_pred HHHHHHHHHHHH
Confidence 999988887754
No 39
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=63.52 E-value=9.2 Score=27.87 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=22.6
Q ss_pred EEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
+|+.-||=||+.|+...+.-........|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeC
Confidence 7888999999999987763211111125777764
No 40
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=63.38 E-value=53 Score=28.16 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccc--hHHHHHHHHHHHcCCCCccccCCeEEcCC
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY--NSLLNFIDKAVDDGFISPSQRSILVSAPN 123 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw--~~l~~~l~~~~~egfi~~~~~~~i~~~~~ 123 (164)
...++..||++|. -||.+|+.|+... .+|++++-...+- .+-....+.+.+.|....-. .-.-+
T Consensus 246 m~~~~~~adlvIs-r~G~~t~~E~~~~---------g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~----~~~~~ 311 (352)
T PRK12446 246 LPDILAITDFVIS-RAGSNAIFEFLTL---------QKPMLLIPLSKFASRGDQILNAESFERQGYASVLY----EEDVT 311 (352)
T ss_pred HHHHHHhCCEEEE-CCChhHHHHHHHc---------CCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcc----hhcCC
Confidence 3357899995555 5566787787733 8999998321110 11112234566665431111 01114
Q ss_pred HHHHHHHHHhhc
Q 031213 124 AKELVQKLEEYV 135 (164)
Q Consensus 124 ~ee~~~~l~~~~ 135 (164)
++.+.+.+.+..
T Consensus 312 ~~~l~~~l~~ll 323 (352)
T PRK12446 312 VNSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHHHH
Confidence 677777776653
No 41
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=63.28 E-value=40 Score=27.85 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCeEEEcc-CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 43 HQRKAEMARNSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlP-GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
.+....++..||+++... .|+|.. ++|++.. .+|+|..+..| +..+ +.......++-.
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama~------G~Pvi~~~~~~-~~e~------------i~~~~~G~~~~~ 310 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMAS------GTPVIAYGKGG-ALET------------VIDGVTGILFEE 310 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHHc------CCCEEEeCCCC-Ccce------------eeCCCCEEEeCC
Confidence 445677889999988532 677775 4777764 89999987643 3221 111223334446
Q ss_pred CCHHHHHHHHHhhcC
Q 031213 122 PNAKELVQKLEEYVP 136 (164)
Q Consensus 122 ~~~ee~~~~l~~~~~ 136 (164)
+|++++.+.|.....
T Consensus 311 ~~~~~la~~i~~l~~ 325 (351)
T cd03804 311 QTVESLAAAVERFEK 325 (351)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789988888877643
No 42
>COG1679 Predicted aconitase [General function prediction only]
Probab=62.71 E-value=73 Score=28.50 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred HHHHHHhcCC----EEEEEeCCCcccccccCCccceEee-cCCHHHHHHHHHHhCC---eEEEccCCCcCHHHHHHHHHH
Q 031213 4 VSHVVHRGGG----HVLGIIPKTLMNKEITGETVGEVKP-VADMHQRKAEMARNSD---CFIALPGGYGTLEELLEVITW 75 (164)
Q Consensus 4 va~ga~~~GG----~viGIiP~~~~~~e~~~~~~~el~i-~~~m~~Rk~~m~~~sD---afIvlPGG~GTLdEl~e~~t~ 75 (164)
..-++-..|+ ++.||+|++- ....++...++.| ..++.+=...+- .+| .+|.+.-=.=.++|+..++.+
T Consensus 235 lgAA~atsgavam~HvegvTPE~~--~~~~~d~~e~i~i~~~d~~da~~~l~-~~~~epdli~iGcPHaS~~E~~~la~~ 311 (403)
T COG1679 235 LGAAMATSGAVAMYHVEGVTPEAR--ALAFGDKAEKIEIEREDIDDAWERLN-TADGEPDLIALGCPHASLEELRRLAEL 311 (403)
T ss_pred HHHHHhhcCceeEEEecCCCcccc--cccccccCceeeeeHHHHHHHHHHhh-cCCCCCCEEEeCCCCCCHHHHHHHHHH
Confidence 3334444555 7899999985 2223445555444 456643333333 445 499998889999999999988
Q ss_pred HHcCC--CCccEEEEecCccchHHHHH--HHHHHHcC
Q 031213 76 AQLGI--HDKPVGLINVDGYYNSLLNF--IDKAVDDG 108 (164)
Q Consensus 76 ~qlg~--~~kPivlln~~gfw~~l~~~--l~~~~~eg 108 (164)
..-.. .++|+++....+-+...... ++.|.+-|
T Consensus 312 l~~r~~~~~~~~~V~~sr~v~~~a~~~G~~~~le~~g 348 (403)
T COG1679 312 LKGRKRPAGVPLYVTTSRAVYAQARKEGYLAKLEELG 348 (403)
T ss_pred HhccCCCCCCCEEEEcCHHHHHHHhhhhhHHHHHHcC
Confidence 77654 47899987665444443333 44444444
No 43
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=62.40 E-value=23 Score=29.50 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=39.8
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCC-CCccEEEEe---cCccchHHHHHHHHHHHcCCCCccccCCeEE--cCCHHHHH
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLIN---VDGYYNSLLNFIDKAVDDGFISPSQRSILVS--APNAKELV 128 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~-~~kPivlln---~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~--~~~~ee~~ 128 (164)
|+|+|-||.|| ++|. .+||++=+. ..-+.+-..+.+..+...- -.......+++ -++.+++.
T Consensus 2 a~viLaGG~Gt-----------RLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGT-----------RLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCcc-----------ccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 78999999999 3353 477777554 3346666666655432210 00111222333 34567888
Q ss_pred HHHHhhc
Q 031213 129 QKLEEYV 135 (164)
Q Consensus 129 ~~l~~~~ 135 (164)
+++++..
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 9998865
No 44
>PRK10565 putative carbohydrate kinase; Provisional
Probab=62.30 E-value=29 Score=31.68 Aligned_cols=111 Identities=18% Similarity=0.107 Sum_probs=59.1
Q ss_pred HHHHHHhcCC-EEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCC
Q 031213 4 VSHVVHRGGG-HVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHD 82 (164)
Q Consensus 4 va~ga~~~GG-~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~ 82 (164)
+|++|+..|. .|.=+.|+...+ .......|+++.+--.+--..+...+|++++=|| .|+-++...++.. +...+
T Consensus 273 aa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG-lg~~~~~~~~~~~--~~~~~ 347 (508)
T PRK10565 273 AGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG-LGQQEWGKKALQK--VENFR 347 (508)
T ss_pred HHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-CCCCHHHHHHHHH--HHhcC
Confidence 5677887754 454445654321 1223445655533111223334578899887776 7876665554422 23456
Q ss_pred ccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHH
Q 031213 83 KPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLE 132 (164)
Q Consensus 83 kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~ 132 (164)
+|+| ++.+| +.+|. .... . ....+++..+-|+...+.
T Consensus 348 ~P~V-LDAda-----L~ll~---~~~~-~---~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 348 KPML-WDADA-----LNLLA---INPD-K---RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCEE-EEchH-----HHHHh---hCcc-c---cCCeEECCCHHHHHHHhC
Confidence 8976 56655 22222 1110 0 124577888888877764
No 45
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=61.60 E-value=9.3 Score=32.95 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHHcCCCCccccCCe---EEcCCHHHHHHHHHhh
Q 031213 92 GYYNSLLNFIDKAVDDGFISPSQRSIL---VSAPNAKELVQKLEEY 134 (164)
Q Consensus 92 gfw~~l~~~l~~~~~egfi~~~~~~~i---~~~~~~ee~~~~l~~~ 134 (164)
.+|+-+-+-+..|+.+|.|+++..+.+ .+..+++|+.+.+++-
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 368888888899999999999988766 7889999999999764
No 46
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=61.52 E-value=11 Score=33.25 Aligned_cols=77 Identities=22% Similarity=0.171 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCC
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHD 82 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~ 82 (164)
.+.+++.+.+.++|==... . +. ....+.+.+.+.++.- ...++.+||+| +-.||.||+.|... +.
T Consensus 256 ~~~~a~~~l~~~vi~~~~~--~-~~-~~~~~p~n~~v~~~~p-~~~~l~~ad~v-I~hGG~gtt~eaL~---------~g 320 (406)
T COG1819 256 IVLEALADLDVRVIVSLGG--A-RD-TLVNVPDNVIVADYVP-QLELLPRADAV-IHHGGAGTTSEALY---------AG 320 (406)
T ss_pred HHHHHHhcCCcEEEEeccc--c-cc-ccccCCCceEEecCCC-HHHHhhhcCEE-EecCCcchHHHHHH---------cC
Confidence 3456666677777654333 1 11 1222333333332211 11378899965 46999999988773 38
Q ss_pred ccEEEEecCccchH
Q 031213 83 KPVGLINVDGYYNS 96 (164)
Q Consensus 83 kPivlln~~gfw~~ 96 (164)
+|++++-. .||.
T Consensus 321 vP~vv~P~--~~DQ 332 (406)
T COG1819 321 VPLVVIPD--GADQ 332 (406)
T ss_pred CCEEEecC--Ccch
Confidence 99998753 3554
No 47
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=61.43 E-value=65 Score=26.53 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCEEEEEeCCCccccc-------ccCCccceEeecCCHHHHHHHHHHhCCe-EEEccCCCcCHHHHH-HHH
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKE-------ITGETVGEVKPVADMHQRKAEMARNSDC-FIALPGGYGTLEELL-EVI 73 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e-------~~~~~~~el~i~~~m~~Rk~~m~~~sDa-fIvlPGG~GTLdEl~-e~~ 73 (164)
++|-+|+.-||++|-|+|+.....+ .....+.|.++... -..+|.....+ |+++-+- .++.. .++
T Consensus 60 aLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~---~e~~~~~~~~iDF~vVDc~---~~d~~~~vl 133 (218)
T PF07279_consen 60 ALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA---PEEVMPGLKGIDFVVVDCK---REDFAARVL 133 (218)
T ss_pred HHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC---HHHHHhhccCCCEEEEeCC---chhHHHHHH
Confidence 4677888999999999999764211 11223345554333 22344444333 7777776 46666 666
Q ss_pred HHHHcCCCC
Q 031213 74 TWAQLGIHD 82 (164)
Q Consensus 74 t~~qlg~~~ 82 (164)
...+++...
T Consensus 134 ~~~~~~~~G 142 (218)
T PF07279_consen 134 RAAKLSPRG 142 (218)
T ss_pred HHhccCCCc
Confidence 666655433
No 48
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=61.02 E-value=17 Score=30.68 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCC------cc--ccCC
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFIS------PS--QRSI 117 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~------~~--~~~~ 117 (164)
...++..||.+|+ ++|..|+ |.+ .+ .+|+|+....+.|....+ +++...++.. .. ....
T Consensus 255 ~~~~~~~aDl~v~-~sG~~~l-Ea~---a~------G~PvI~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 321 (380)
T PRK00025 255 KREAMAAADAALA-ASGTVTL-ELA---LL------KVPMVVGYKVSPLTFWIA--KRLVKVPYVSLPNLLAGRELVPEL 321 (380)
T ss_pred HHHHHHhCCEEEE-CccHHHH-HHH---Hh------CCCEEEEEccCHHHHHHH--HHHHcCCeeehHHHhcCCCcchhh
Confidence 3556788897766 7788776 663 32 899997643333332222 1222222211 00 0112
Q ss_pred eEEcCCHHHHHHHHHhhcC
Q 031213 118 LVSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 118 i~~~~~~ee~~~~l~~~~~ 136 (164)
+.-..|++++.+.+.+...
T Consensus 322 ~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 322 LQEEATPEKLARALLPLLA 340 (380)
T ss_pred cCCCCCHHHHHHHHHHHhc
Confidence 2234578888888877643
No 49
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.86 E-value=15 Score=31.27 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=34.8
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC---ccchHH------HHHHHHHHHcCC
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD---GYYNSL------LNFIDKAVDDGF 109 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~---gfw~~l------~~~l~~~~~egf 109 (164)
+..|.+|++ ||=||+-+.+..+. ..++|++.+|.. ||.... .+.|+.+.+..|
T Consensus 56 ~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~~g~~ 117 (305)
T PRK02645 56 ELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQEDRY 117 (305)
T ss_pred cCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHHcCCc
Confidence 346765555 99999998886653 357999999962 566653 244555555443
No 50
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=60.76 E-value=25 Score=30.37 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=35.8
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC-----ccchHHHHHHH
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----GYYNSLLNFID 102 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~-----gfw~~l~~~l~ 102 (164)
..+..|+|||+=| .=||+|-..++++.--+ +||||+-+.- -..|....+++
T Consensus 74 ~~~~~dG~VVtHG-TDTme~TA~~Ls~~l~~--~kPVVlTGsmrp~~~~~sDg~~NL~~ 129 (336)
T TIGR00519 74 EYDDYDGFVITHG-TDTMAYTAAALSFMLET--PKPVVFTGAQRSSDRPSSDAALNLLC 129 (336)
T ss_pred HHhcCCeEEEccC-CchHHHHHHHHHHHcCC--CCCEEEECCCCCCCCcCcchHHHHHH
Confidence 3345899999874 89999999988874333 8999998641 24455555444
No 51
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=60.65 E-value=56 Score=25.58 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCeEEEccC--CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 43 HQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPG--G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
.+....++..||++|.-.. |+|+ =++|++.. .+|++..+..+....+.. + .....++-
T Consensus 243 ~~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~~~~~~~~-------~-----~~~g~~~~ 302 (348)
T cd03820 243 TKNIEEYYAKASIFVLTSRFEGFPM--VLLEAMAF------GLPVISFDCPTGPSEIIE-------D-----GVNGLLVP 302 (348)
T ss_pred cchHHHHHHhCCEEEeCccccccCH--HHHHHHHc------CCCEEEecCCCchHhhhc-------c-----CcceEEeC
Confidence 5667778889998765432 3443 36777765 899998765443332211 1 11222333
Q ss_pred cCCHHHHHHHHHhhc
Q 031213 121 APNAKELVQKLEEYV 135 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (164)
..|++++.+.|.+..
T Consensus 303 ~~~~~~~~~~i~~ll 317 (348)
T cd03820 303 NGDVEALAEALLRLM 317 (348)
T ss_pred CCCHHHHHHHHHHHH
Confidence 456788888888764
No 52
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=59.71 E-value=19 Score=29.06 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCeEEEccCCCcCHHHHHHHHHHHHcC-------CCCccEEEEecCc-cchHHHHHHHHHHHcC-CCCccccCCeEEcCC
Q 031213 53 SDCFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLINVDG-YYNSLLNFIDKAVDDG-FISPSQRSILVSAPN 123 (164)
Q Consensus 53 sDafIvlPGG~GTLdEl~e~~t~~qlg-------~~~kPivlln~~g-fw~~l~~~l~~~~~eg-fi~~~~~~~i~~~~~ 123 (164)
.|+.|+.|-+..||..+.-=++-+-+. +.++|+||+-.+- +-..-++.+-.+.+.| .|-|.....++--.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 478999999999999998766644443 2378999876543 3333444444455555 445555555666788
Q ss_pred HHHHHHHHH
Q 031213 124 AKELVQKLE 132 (164)
Q Consensus 124 ~ee~~~~l~ 132 (164)
.||+++++-
T Consensus 161 ieDlvd~~v 169 (191)
T COG0163 161 IEDLVDFVV 169 (191)
T ss_pred HHHHHHHHH
Confidence 999999884
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=58.88 E-value=39 Score=26.92 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCeEEEc---cCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeE
Q 031213 43 HQRKAEMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvl---PGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~ 119 (164)
.+...-++..||++|.- ..|+|. =++|++.. .+|+|..+..+ ...+ +.+ .....++
T Consensus 253 ~~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~-~~e~-------i~~-----~~~g~~~ 311 (359)
T cd03823 253 QEEIDDFYAEIDVLVVPSIWPENFPL--VIREALAA------GVPVIASDIGG-MAEL-------VRD-----GVNGLLF 311 (359)
T ss_pred HHHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHHC------CCCEEECCCCC-HHHH-------hcC-----CCcEEEE
Confidence 46666788999988753 345554 36777754 89999877543 2222 111 1122344
Q ss_pred EcCCHHHHHHHHHhhcC
Q 031213 120 SAPNAKELVQKLEEYVP 136 (164)
Q Consensus 120 ~~~~~ee~~~~l~~~~~ 136 (164)
-.+|++++.+.+.+...
T Consensus 312 ~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 312 PPGDAEDLAAALERLID 328 (359)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 45668999988877654
No 54
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=58.73 E-value=29 Score=29.73 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=29.0
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
+..|+|||.= |.=||+|....+.+.- .. +||||+-+.
T Consensus 77 ~~~dGiVVtH-GTDTmeeTA~~L~~~l-~~-~kPVVlTGA 113 (323)
T cd00411 77 DSYDGFVITH-GTDTMEETAYFLSLTL-EN-DKPVVLTGS 113 (323)
T ss_pred HhcCcEEEEc-CcccHHHHHHHHHHHh-cC-CCCEEEECC
Confidence 3479999886 4899999999988643 23 899999854
No 55
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=57.34 E-value=51 Score=26.28 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=47.6
Q ss_pred eEeecCCH-HHHHHHHHHhCCeEEEccC-----CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcC
Q 031213 35 EVKPVADM-HQRKAEMARNSDCFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDG 108 (164)
Q Consensus 35 el~i~~~m-~~Rk~~m~~~sDafIvlPG-----G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~eg 108 (164)
.+.....+ .+....++..||++|.... |.|.-.=+.|++.. .+|+|..+..+.-+.+ . +
T Consensus 276 ~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~------G~pvi~~~~~~~~~~~-~-------~- 340 (394)
T cd03794 276 NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAA------GKPVLASVDGESAELV-E-------E- 340 (394)
T ss_pred cEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHC------CCcEEEecCCCchhhh-c-------c-
Confidence 34444433 3566677888998875433 23333346777764 8999988765432211 1 1
Q ss_pred CCCccccCCeEEcCCHHHHHHHHHhhc
Q 031213 109 FISPSQRSILVSAPNAKELVQKLEEYV 135 (164)
Q Consensus 109 fi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (164)
.....++-.+|++++.+.|.+..
T Consensus 341 ----~~~g~~~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 341 ----AGAGLVVPPGDPEALAAAILELL 363 (394)
T ss_pred ----CCcceEeCCCCHHHHHHHHHHHH
Confidence 11222344458899888887764
No 56
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=57.02 E-value=50 Score=27.94 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCeEEEc--cCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 43 HQRKAEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvl--PGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
++....++..||+||.. ..|+|. =++|++.. .+|++..+..| ...+ +.++ ....++-
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~--~~lEAma~------G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~~ 351 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGL--VAMEAQAC------GTPVVAARVGG-LPVA-------VADG-----ETGLLVD 351 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcCh--HHHHHHHc------CCCEEEecCCC-cHhh-------hccC-----CceEECC
Confidence 45667789999998753 456676 37777765 89999887643 2222 1111 1111222
Q ss_pred cCCHHHHHHHHHhhc
Q 031213 121 APNAKELVQKLEEYV 135 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (164)
.+|++++.+.|.++.
T Consensus 352 ~~d~~~la~~i~~~l 366 (405)
T TIGR03449 352 GHDPADWADALARLL 366 (405)
T ss_pred CCCHHHHHHHHHHHH
Confidence 358888888777654
No 57
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=56.56 E-value=27 Score=23.52 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=24.5
Q ss_pred CeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCc
Q 031213 54 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 92 (164)
Q Consensus 54 DafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~g 92 (164)
=-+|.|| +|++|++.+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3489999 59999999876 466664 666677665
No 58
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=56.49 E-value=11 Score=30.76 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=29.8
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchH
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 96 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~ 96 (164)
.+++.||++|..-+..|= |++. +.||+++++.. ||+.
T Consensus 195 ~Ll~~s~~VvtinStvGl-----EAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 195 ELLEQSDAVVTINSTVGL-----EALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHhCCEEEEECCHHHH-----HHHH------cCCceEEecCc-ccCC
Confidence 579999999999999884 5553 39999999864 7765
No 59
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=56.46 E-value=11 Score=27.43 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHhCCe--EEEccCCCcCHHHHHHHHHHHHcCCC-CccEEEEe
Q 031213 41 DMHQRKAEMARNSDC--FIALPGGYGTLEELLEVITWAQLGIH-DKPVGLIN 89 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDa--fIvlPGG~GTLdEl~e~~t~~qlg~~-~kPivlln 89 (164)
+..+.-......++. .|+.-||=||+.|+...+.- .... ..|+.++-
T Consensus 40 ~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~--~~~~~~~~l~iiP 89 (130)
T PF00781_consen 40 GHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMG--SDREDKPPLGIIP 89 (130)
T ss_dssp THHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCT--STSSS--EEEEEE
T ss_pred chHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhh--cCCCccceEEEec
Confidence 444444434455554 88889999999999876632 1111 23666664
No 60
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=55.94 E-value=1e+02 Score=27.59 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=54.5
Q ss_pred EEEEEeCCCcccccccCCccceEeec-CCHHHHHHHH--HHhCCe-EEEccCCCcCHHHHHHHHHHHHcCC--CCccEEE
Q 031213 14 HVLGIIPKTLMNKEITGETVGEVKPV-ADMHQRKAEM--ARNSDC-FIALPGGYGTLEELLEVITWAQLGI--HDKPVGL 87 (164)
Q Consensus 14 ~viGIiP~~~~~~e~~~~~~~el~i~-~~m~~Rk~~m--~~~sDa-fIvlPGG~GTLdEl~e~~t~~qlg~--~~kPivl 87 (164)
+++||+|+.-............+.+. +++.+-...+ -...+. +|+|.-=-=|++|+.++..+..-.. .++|+.+
T Consensus 246 Hi~GvTPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i 325 (400)
T PF04412_consen 246 HIVGVTPEAPTLEAAFGGKAERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWI 325 (400)
T ss_pred EEeCCCCCCCcchhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEE
Confidence 78999999754322222223333333 2442222222 111222 8888888899999999998877544 3678888
Q ss_pred EecCccchHHHH--HHHHHHHcC
Q 031213 88 INVDGYYNSLLN--FIDKAVDDG 108 (164)
Q Consensus 88 ln~~gfw~~l~~--~l~~~~~eg 108 (164)
.-....+..... ..+.+.+.|
T Consensus 326 ~t~~~v~~~a~~~G~~~~le~~G 348 (400)
T PF04412_consen 326 TTSRAVYELAERMGYVERLEKAG 348 (400)
T ss_pred ECCHHHHHHHHhCCHHHHHHHcC
Confidence 765544444443 344444444
No 61
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=55.58 E-value=59 Score=25.59 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcC
Q 031213 43 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 122 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~ 122 (164)
.+-...++..||++|.-...-|.-.=+.|++.. .+|++.-+..+ ...++. + .....++-.+
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~------G~Pvi~s~~~~-~~~~i~-------~-----~~~g~~~~~~ 314 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAM------GRPVIATDVPG-CREAVI-------D-----GVNGFLVPPG 314 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHc------CCCEEEecCCC-chhhhh-------c-----CcceEEECCC
Confidence 334556788899876543322222346777754 89999876543 232211 1 1222344456
Q ss_pred CHHHHHHHHHhhc
Q 031213 123 NAKELVQKLEEYV 135 (164)
Q Consensus 123 ~~ee~~~~l~~~~ 135 (164)
|++++.+.|.+..
T Consensus 315 ~~~~~~~~i~~l~ 327 (359)
T cd03808 315 DAEALADAIERLI 327 (359)
T ss_pred CHHHHHHHHHHHH
Confidence 7999998887754
No 62
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=55.56 E-value=18 Score=28.41 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=50.8
Q ss_pred HHhCCeEEEccCCCcCHHHHHHHHH-----HHHcC-CCCccEEEEec--CccchH--HHHHHHHHHHcCC--CCccccCC
Q 031213 50 ARNSDCFIALPGGYGTLEELLEVIT-----WAQLG-IHDKPVGLINV--DGYYNS--LLNFIDKAVDDGF--ISPSQRSI 117 (164)
Q Consensus 50 ~~~sDafIvlPGG~GTLdEl~e~~t-----~~qlg-~~~kPivlln~--~gfw~~--l~~~l~~~~~egf--i~~~~~~~ 117 (164)
.+.+|++|+.|=..+|+.-+..=++ ..-+. ..++|+++.-. ...|+. ..+.++.+.+.|+ +++.....
T Consensus 74 ~~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~l 153 (177)
T TIGR02113 74 AKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLL 153 (177)
T ss_pred chhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcc
Confidence 4578999999999999987763222 11111 23789998641 236654 4455777877774 34443111
Q ss_pred ------eEEcCCHHHHHHHHHhh
Q 031213 118 ------LVSAPNAKELVQKLEEY 134 (164)
Q Consensus 118 ------i~~~~~~ee~~~~l~~~ 134 (164)
.==..+++++++.++++
T Consensus 154 a~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 154 ACGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred cCCCccccCCCCHHHHHHHHHHh
Confidence 11223567887777653
No 63
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=55.28 E-value=46 Score=27.12 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=36.2
Q ss_pred ChHHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcC---HHHHHHHHHHHH
Q 031213 1 MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGT---LEELLEVITWAQ 77 (164)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GT---LdEl~e~~t~~q 77 (164)
|.-+|++++..||..+ ..+..+....+++.+|++++=+|- ++ .+.+..+.. .
T Consensus 20 ~~~~a~~~~~~g~~~~----------------------~~~~~e~~~~~l~~~d~vvi~~G~-l~~~~~~~i~~~~~--~ 74 (242)
T cd01170 20 MNFVANVLLAIGASPI----------------------MSDAPEEVEELAKIAGALVINIGT-LTSEQIEAMLKAGK--A 74 (242)
T ss_pred HhHHHHHHHHhCCchh----------------------hcCCHHHHHHHHHHcCcEEEeCCC-CChHHHHHHHHHHH--H
Confidence 6678888888888533 112344455667889998884433 33 222222221 1
Q ss_pred cCCCCccEEEEecC
Q 031213 78 LGIHDKPVGLINVD 91 (164)
Q Consensus 78 lg~~~kPivlln~~ 91 (164)
...+++|+| +|..
T Consensus 75 ~~~~~~pvV-lDp~ 87 (242)
T cd01170 75 ANQLGKPVV-LDPV 87 (242)
T ss_pred HHhcCCCEE-Eccc
Confidence 234577865 6664
No 64
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=54.58 E-value=54 Score=25.71 Aligned_cols=71 Identities=20% Similarity=0.367 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 44 QRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
+-...++..||++|... +|.|+ =++|++.. .+|++..+..++ ..+.+ ......++-.
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~~------g~pvI~~~~~~~-~~~~~------------~~~~g~~~~~ 325 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGL--VLLEAMAA------GLPVVASDVGGI-PEVVE------------DGETGLLVPP 325 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccc--hHHHHHHc------CCcEEEeCCCCh-hHHhc------------CCcceEEeCC
Confidence 55566778899877543 24443 36666654 899998876432 22211 1122233444
Q ss_pred CCHHHHHHHHHhhc
Q 031213 122 PNAKELVQKLEEYV 135 (164)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (164)
+|++++.+.|.+..
T Consensus 326 ~~~~~l~~~i~~~~ 339 (374)
T cd03801 326 GDPEALAEAILRLL 339 (374)
T ss_pred CCHHHHHHHHHHHH
Confidence 55889988888753
No 65
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=54.01 E-value=72 Score=23.32 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=5.4
Q ss_pred CeEEEccCCCc
Q 031213 54 DCFIALPGGYG 64 (164)
Q Consensus 54 DafIvlPGG~G 64 (164)
|++|||.||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 44455555544
No 66
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=53.99 E-value=72 Score=27.30 Aligned_cols=73 Identities=10% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCeEEEc---cCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeE
Q 031213 43 HQRKAEMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvl---PGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~ 119 (164)
.+....++..||+||.- ..|+|.. ++|++.. .+|+|..+..| ...+ +.+ .....+.
T Consensus 267 ~~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma~------G~PVI~s~~gg-~~Ei-------v~~-----~~~G~~l 325 (380)
T PRK15484 267 PEKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMAA------GKPVLASTKGG-ITEF-------VLE-----GITGYHL 325 (380)
T ss_pred HHHHHHHHHhCCEEEeCCCCccccccH--HHHHHHc------CCCEEEeCCCC-cHhh-------ccc-----CCceEEE
Confidence 34556678899998862 3566653 6777765 89999987644 2221 111 1111112
Q ss_pred -EcCCHHHHHHHHHhhcC
Q 031213 120 -SAPNAKELVQKLEEYVP 136 (164)
Q Consensus 120 -~~~~~ee~~~~l~~~~~ 136 (164)
-..|++++.+.|.+...
T Consensus 326 ~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 326 AEPMTSDSIISDINRTLA 343 (380)
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 24588888888876543
No 67
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=53.51 E-value=82 Score=26.46 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=42.5
Q ss_pred EeecCCH-HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccc
Q 031213 36 VKPVADM-HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQ 114 (164)
Q Consensus 36 l~i~~~m-~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~ 114 (164)
+.+...+ ..+...++..||++|. +.| +. +.|++.+ .+|+|.....|-+..+ +..|
T Consensus 257 v~~~~~~~~~~~~~~l~~ad~vv~-~Sg--~~--~~EA~a~------g~PvI~~~~~~~~~e~-------~~~g------ 312 (365)
T TIGR00236 257 VHLIEPLEYLDFLNLAANSHLILT-DSG--GV--QEEAPSL------GKPVLVLRDTTERPET-------VEAG------ 312 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEE-CCh--hH--HHHHHHc------CCCEEECCCCCCChHH-------HhcC------
Confidence 3344434 3445566788887654 443 22 4556654 8999986332323321 1111
Q ss_pred cCCeEEcCCHHHHHHHHHhhcC
Q 031213 115 RSILVSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 115 ~~~i~~~~~~ee~~~~l~~~~~ 136 (164)
..+.+..|++++.+.+.+...
T Consensus 313 -~~~lv~~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 313 -TNKLVGTDKENITKAAKRLLT 333 (365)
T ss_pred -ceEEeCCCHHHHHHHHHHHHh
Confidence 223345689999998887653
No 68
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=52.68 E-value=53 Score=26.37 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCeEEEcc--C--CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCe
Q 031213 43 HQRKAEMARNSDCFIALP--G--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSIL 118 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlP--G--G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i 118 (164)
.+....++..||++|.-- . |+|. =++|++.. .+|++..+..+ .+.+. ......+
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~e~~~~~~--~~~Ea~a~------G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 258 DEELPELFSAADVVVLPYRSADQTQSG--VLAYAIGF------GKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHHhhcCEEEecccccccccch--HHHHHHHc------CCCEEecCCCC-hheee-------------eCCCcEE
Confidence 456677888999877432 1 3332 25556654 89999887654 22211 1122233
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 031213 119 VSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 119 ~~~~~~ee~~~~l~~~~~ 136 (164)
+-.+|++++.+.|.....
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 445678888888877654
No 69
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=52.56 E-value=85 Score=25.42 Aligned_cols=72 Identities=15% Similarity=0.292 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 44 QRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
+....++..||++|.-. .|+|. =++|+++. .+|++..+..|.- .+ +.......+.-.
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~~------g~PvI~~~~~~~~-e~------------~~~~~~g~~~~~ 314 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPN--TAIEALAC------GTPVVAFDVGGIP-DI------------VDHGVTGYLAKP 314 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccH--HHHHHHhc------CCCEEEecCCCCh-hh------------eeCCCceEEeCC
Confidence 34556788999877643 44454 56777765 8999988764322 11 111112223344
Q ss_pred CCHHHHHHHHHhhcC
Q 031213 122 PNAKELVQKLEEYVP 136 (164)
Q Consensus 122 ~~~ee~~~~l~~~~~ 136 (164)
.|++++.+.+.+...
T Consensus 315 ~~~~~~~~~l~~l~~ 329 (365)
T cd03825 315 GDPEDLAEGIEWLLA 329 (365)
T ss_pred CCHHHHHHHHHHHHh
Confidence 578888888876543
No 70
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=52.53 E-value=63 Score=26.06 Aligned_cols=72 Identities=24% Similarity=0.408 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCeEEEcc--------CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccc
Q 031213 43 HQRKAEMARNSDCFIALP--------GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQ 114 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlP--------GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~ 114 (164)
.+....++..||+++... .|+| .=++|++.. .+|++..+..+. ..+.+ + ..
T Consensus 246 ~~~l~~~~~~adi~l~~s~~~~~~~~e~~~--~~~~Ea~a~------G~Pvi~~~~~~~-~~~i~-------~-----~~ 304 (355)
T cd03799 246 QEEVRELLRAADLFVLPSVTAADGDREGLP--VVLMEAMAM------GLPVISTDVSGI-PELVE-------D-----GE 304 (355)
T ss_pred hHHHHHHHHhCCEEEecceecCCCCccCcc--HHHHHHHHc------CCCEEecCCCCc-chhhh-------C-----CC
Confidence 466777888999877642 3343 357777765 899998776432 22211 1 11
Q ss_pred cCCeEEcCCHHHHHHHHHhhc
Q 031213 115 RSILVSAPNAKELVQKLEEYV 135 (164)
Q Consensus 115 ~~~i~~~~~~ee~~~~l~~~~ 135 (164)
...++-.+|++++.+.|.++.
T Consensus 305 ~g~~~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 305 TGLLVPPGDPEALADAIERLL 325 (355)
T ss_pred ceEEeCCCCHHHHHHHHHHHH
Confidence 222233348899988887764
No 71
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=52.26 E-value=1e+02 Score=25.58 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=23.2
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCC-CCccEEEEe
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLIN 89 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~-~~kPivlln 89 (164)
-.|+.-||=||+.|+...+. +.+. .+.|+.++-
T Consensus 54 d~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP 87 (293)
T TIGR03702 54 STVIAGGGDGTLREVATALA--QIRDDAAPALGLLP 87 (293)
T ss_pred CEEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEc
Confidence 37778999999999997773 2221 245777764
No 72
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=51.41 E-value=97 Score=25.95 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHhCCeEEEccC--CCcCHHHHHHHHHHHHcCCCCccEEEEe-cCccchHHHHHHHHHHHcCCCCccccCC
Q 031213 41 DMHQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLIN-VDGYYNSLLNFIDKAVDDGFISPSQRSI 117 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDafIvlPG--G~GTLdEl~e~~t~~qlg~~~kPivlln-~~gfw~~l~~~l~~~~~egfi~~~~~~~ 117 (164)
+..+........+|++|.-.- |+|. =++|+++. .+|++..+ ..| ...+ +.+ .....
T Consensus 246 ~~~~~~~~~~~~~d~~v~~s~~Egf~~--~~lEAma~------G~Pvv~s~~~~g-~~ei-------v~~-----~~~G~ 304 (359)
T PRK09922 246 QPWEVVQQKIKNVSALLLTSKFEGFPM--TLLEAMSY------GIPCISSDCMSG-PRDI-------IKP-----GLNGE 304 (359)
T ss_pred CcHHHHHHHHhcCcEEEECCcccCcCh--HHHHHHHc------CCCEEEeCCCCC-hHHH-------ccC-----CCceE
Confidence 445555666778898885433 3343 46666654 89999988 443 3322 211 12223
Q ss_pred eEEcCCHHHHHHHHHhhcCCC
Q 031213 118 LVSAPNAKELVQKLEEYVPLH 138 (164)
Q Consensus 118 i~~~~~~ee~~~~l~~~~~~~ 138 (164)
++-..|++++.+.|.......
T Consensus 305 lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 305 LYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred EECCCCHHHHHHHHHHHHhCc
Confidence 444689999999998875443
No 73
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=50.92 E-value=72 Score=25.80 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=42.5
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHH
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 125 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~e 125 (164)
...++..||++|.-...-|.--=++|++.. .+|+|..+..+ ...+ +.+ ...++-.+|++
T Consensus 256 ~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~------G~PvI~~~~~~-~~e~------------i~~--~g~~~~~~~~~ 314 (360)
T cd04951 256 IAAYYNAADLFVLSSAWEGFGLVVAEAMAC------ELPVVATDAGG-VREV------------VGD--SGLIVPISDPE 314 (360)
T ss_pred HHHHHHhhceEEecccccCCChHHHHHHHc------CCCEEEecCCC-hhhE------------ecC--CceEeCCCCHH
Confidence 345688899877655422222247777765 89999876532 2221 111 23355568999
Q ss_pred HHHHHHHhhc
Q 031213 126 ELVQKLEEYV 135 (164)
Q Consensus 126 e~~~~l~~~~ 135 (164)
++.+.|.+..
T Consensus 315 ~~~~~i~~ll 324 (360)
T cd04951 315 ALANKIDEIL 324 (360)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 74
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=50.82 E-value=90 Score=25.55 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCeEEEccC---------CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccc
Q 031213 44 QRKAEMARNSDCFIALPG---------GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQ 114 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlPG---------G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~ 114 (164)
+-...++..||++|. |. |+|+ =++|+++. .+|++.-+..+. . +. +....
T Consensus 256 ~~l~~~~~~ad~~v~-ps~~~~~~~~E~~~~--~~~EA~a~------G~PvI~s~~~~~-~---e~---------i~~~~ 313 (367)
T cd05844 256 AEVRELMRRARIFLQ-PSVTAPSGDAEGLPV--VLLEAQAS------GVPVVATRHGGI-P---EA---------VEDGE 313 (367)
T ss_pred HHHHHHHHhCCEEEE-CcccCCCCCccCCch--HHHHHHHc------CCCEEEeCCCCc-h---hh---------eecCC
Confidence 455667889998765 33 3344 47777765 899998776542 2 11 11112
Q ss_pred cCCeEEcCCHHHHHHHHHhhcC
Q 031213 115 RSILVSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 115 ~~~i~~~~~~ee~~~~l~~~~~ 136 (164)
...++-.+|++++.+.|.+...
T Consensus 314 ~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 314 TGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred eeEEECCCCHHHHHHHHHHHHc
Confidence 2223335689999888877644
No 75
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=50.43 E-value=16 Score=28.84 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHhCCeEEEccCC--CcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 41 DMHQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDafIvlPGG--~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
-|..|++.|+++||++|++=-| -|+..-..+...-.+ ..++.||.++..
T Consensus 118 ~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~-~~~~y~i~~I~~ 168 (177)
T PF06908_consen 118 QLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQ-EQKGYPIDLIDP 168 (177)
T ss_dssp HHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHH-HHH---EEEE-H
T ss_pred HHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHh-hccCCeEEEecH
Confidence 4579999999999998876333 232222222221111 123678888753
No 76
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=50.27 E-value=1.3e+02 Score=26.07 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=42.8
Q ss_pred CCeE-EEccCCCcCHHHHHHHHHHHHcC-CCCccEEEEecCc-cchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHH
Q 031213 53 SDCF-IALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 129 (164)
Q Consensus 53 sDaf-IvlPGG~GTLdEl~e~~t~~qlg-~~~kPivlln~~g-fw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~ 129 (164)
.|++ |.++||+...+++.+.+.-..-. .++||+++. ..| ..+...+ .+.+.|+ .+.+.++++++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~---~L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKK---ILAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHCCC-------CceecCCHHHHHH
Confidence 4664 45678888888888777643322 268999554 444 2222222 2333331 2578899999999
Q ss_pred HHHhh
Q 031213 130 KLEEY 134 (164)
Q Consensus 130 ~l~~~ 134 (164)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 88754
No 77
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.01 E-value=35 Score=28.55 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHH-----hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHc
Q 031213 39 VADMHQRKAEMAR-----NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDD 107 (164)
Q Consensus 39 ~~~m~~Rk~~m~~-----~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~e 107 (164)
..+=.+|-+-+.+ ..||+++.-||.|+. ++..-+.|.++..++|+++ | |+++-.++-.+...
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i-----G-ySDiTaL~~~l~~~ 110 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV-----G-YSDITALHLALYAK 110 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE-----E-ecHHHHHHHHHHHh
Confidence 4566777776654 479999999999994 6666677777776666654 3 45555554444444
No 78
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=49.87 E-value=65 Score=27.70 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHhCC-eEEEccCCCcCHHHHHHHHHHHHcCC-CCccEEEEec---CccchHHHHHHHHHH---HcCCCCccccCCeE
Q 031213 48 EMARNSD-CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLINV---DGYYNSLLNFIDKAV---DDGFISPSQRSILV 119 (164)
Q Consensus 48 ~m~~~sD-afIvlPGG~GTLdEl~e~~t~~qlg~-~~kPivlln~---~gfw~~l~~~l~~~~---~egfi~~~~~~~i~ 119 (164)
.+++... |+|+|-||.|| ++|. .+||++=+.. .-+.+-+.+.+..+. .+.+=.......++
T Consensus 9 ~~i~~~~va~viLaGG~GT-----------RLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 9 KAIAEGKVAVLLLAGGQGT-----------RLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred HHHhcCCEEEEEECCCccc-----------ccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 3344444 59999999999 2243 4788876642 236666666554432 11110111223333
Q ss_pred EcC--CHHHHHHHHHh
Q 031213 120 SAP--NAKELVQKLEE 133 (164)
Q Consensus 120 ~~~--~~ee~~~~l~~ 133 (164)
.++ +-+++.+++++
T Consensus 78 mtS~~t~~~t~~~~~~ 93 (323)
T cd04193 78 MTSEATHEETRKFFKE 93 (323)
T ss_pred EcChhHhHHHHHHHHh
Confidence 333 46778888875
No 79
>PRK13660 hypothetical protein; Provisional
Probab=49.87 E-value=1.1e+02 Score=24.26 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCeEEEccCCC--cCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 42 MHQRKAEMARNSDCFIALPGGY--GTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 42 m~~Rk~~m~~~sDafIvlPGG~--GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
|..|++.|+++||+.|++=-|- |..--...... .+-..++.||.++.
T Consensus 119 ~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~-k~~~~~~y~i~~I~ 167 (182)
T PRK13660 119 FRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAK-KKQEKEDYPLDLIT 167 (182)
T ss_pred HHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHH-HhhhccCceEEEeC
Confidence 7999999999999988853321 22222222211 11113578888873
No 80
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=49.00 E-value=30 Score=24.34 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=24.3
Q ss_pred HHHHHHHhCCeEEEccC---CCcCHHHHHHHHHH
Q 031213 45 RKAEMARNSDCFIALPG---GYGTLEELLEVITW 75 (164)
Q Consensus 45 Rk~~m~~~sDafIvlPG---G~GTLdEl~e~~t~ 75 (164)
+-..|+..+|+++.||| +-|.--|...+-.+
T Consensus 52 ~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~l 85 (92)
T PF14359_consen 52 ICLAMLSDCDAIYMLPGWENSRGARLEHELAKKL 85 (92)
T ss_pred HHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHC
Confidence 34456679999999999 78888888877654
No 81
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=48.69 E-value=78 Score=25.94 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=39.9
Q ss_pred HHHHHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcC
Q 031213 45 RKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 122 (164)
Q Consensus 45 Rk~~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~ 122 (164)
....++..||++|.-. .|+|.- +.|++.. .+|+|..+..| ...+ +.+| ....++-.+
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~--~~EAma~------g~PvI~s~~~~-~~e~-------i~~~-----~~G~~~~~~ 321 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLA--ALEAMAC------GVPVVASNAGG-IPEV-------VKHG-----ETGFLVDVG 321 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccH--HHHHHHc------CCCEEEeCCCC-chhh-------hcCC-----CceEEcCCC
Confidence 3456678899877542 455542 6666654 89999987654 2221 1111 112223334
Q ss_pred CHHHHHHHHHhhc
Q 031213 123 NAKELVQKLEEYV 135 (164)
Q Consensus 123 ~~ee~~~~l~~~~ 135 (164)
|++++.+.+.+..
T Consensus 322 ~~~~l~~~i~~l~ 334 (371)
T cd04962 322 DVEAMAEYALSLL 334 (371)
T ss_pred CHHHHHHHHHHHH
Confidence 7888877776653
No 82
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=48.18 E-value=52 Score=27.21 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=41.3
Q ss_pred HHHHHHHhCCeEEE--ccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcC
Q 031213 45 RKAEMARNSDCFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 122 (164)
Q Consensus 45 Rk~~m~~~sDafIv--lPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~ 122 (164)
-...++..||+++. ...|+|.- ++|++.. .+|++..+..| .. +. +.+ .....+.-.+
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a~------G~Pvi~s~~~~-~~---e~----i~~-----~~~g~~~~~~ 353 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLT--ALEAMAC------GLPVVATAVGG-PR---DI----VVD-----GVTGLLVDPR 353 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcH--HHHHHhc------CCCEEECCCCC-HH---HH----ccC-----CCCeEEeCCC
Confidence 34556888999874 23555653 6777765 89999876543 22 22 211 1122233345
Q ss_pred CHHHHHHHHHhhc
Q 031213 123 NAKELVQKLEEYV 135 (164)
Q Consensus 123 ~~ee~~~~l~~~~ 135 (164)
|++++.+.|.+..
T Consensus 354 ~~~~l~~~i~~l~ 366 (398)
T cd03800 354 DPEALAAALRRLL 366 (398)
T ss_pred CHHHHHHHHHHHH
Confidence 7888888887654
No 83
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=47.58 E-value=36 Score=29.41 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=37.7
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe-----cCccchHHHHHHHHHHH---cCCCCccccCCeEEc--CCH
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN-----VDGYYNSLLNFIDKAVD---DGFISPSQRSILVSA--PNA 124 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln-----~~gfw~~l~~~l~~~~~---egfi~~~~~~~i~~~--~~~ 124 (164)
|||.|.||.|| ++|. ..|-.++. ..-|++-..+++..+.+ ++ .......++.+ ++-
T Consensus 2 a~vllaGG~GT-----------RLG~-~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~--~~~~IPl~IMTS~~Th 67 (315)
T cd06424 2 VFVLVAGGLGE-----------RLGY-SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKG--EKMEIPFVIMTSDDTH 67 (315)
T ss_pred EEEEecCCCcc-----------ccCC-CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhcc--CCCceeEEEECCCchh
Confidence 79999999999 4454 34444443 23477777777765543 21 11122222322 346
Q ss_pred HHHHHHHHh
Q 031213 125 KELVQKLEE 133 (164)
Q Consensus 125 ee~~~~l~~ 133 (164)
++..+++++
T Consensus 68 ~~T~~~fe~ 76 (315)
T cd06424 68 SKTLKLLEE 76 (315)
T ss_pred HHHHHHHHH
Confidence 778888875
No 84
>PLN02591 tryptophan synthase
Probab=47.47 E-value=52 Score=27.33 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHcCCCCccEEEEecCccchHHHH-----HHHHHHHcCC
Q 031213 65 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDGF 109 (164)
Q Consensus 65 TLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~-----~l~~~~~egf 109 (164)
|++.+|+.+.-.+ ...+.|++++ +||+++.. |++.+.+.|.
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcCC
Confidence 6778888775544 3357898877 48887554 6677777664
No 85
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=46.94 E-value=1.1e+02 Score=25.88 Aligned_cols=63 Identities=29% Similarity=0.417 Sum_probs=37.7
Q ss_pred ccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchH-----HHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHH
Q 031213 59 LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS-----LLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKL 131 (164)
Q Consensus 59 lPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~-----l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l 131 (164)
|-+|+ |++..+++..-..-.-.+.|++|+. ||++ +..|++.+.+.| .+-+.+.|=|-|--+.+
T Consensus 72 L~~g~-t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~G------vdGlivpDLP~ee~~~~ 139 (265)
T COG0159 72 LAAGV-TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAG------VDGLLVPDLPPEESDEL 139 (265)
T ss_pred HHCCC-CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcC------CCEEEeCCCChHHHHHH
Confidence 44555 6677777775444333467999985 6666 555666776665 34556666554444433
No 86
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=46.60 E-value=87 Score=26.60 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCeEEE--ccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 43 HQRKAEMARNSDCFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIv--lPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
++....++..||++|. .|.|+|. =++|++.. .+|+|..+..|. . +. +.......++-
T Consensus 291 ~~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA~------G~PVIas~~~g~-~---e~---------i~~~~~G~lv~ 349 (396)
T cd03818 291 YDQYLALLQVSDVHVYLTYPFVLSW--SLLEAMAC------GCLVVGSDTAPV-R---EV---------ITDGENGLLVD 349 (396)
T ss_pred HHHHHHHHHhCcEEEEcCcccccch--HHHHHHHC------CCCEEEcCCCCc-h---hh---------cccCCceEEcC
Confidence 3455567788998885 3445543 36777754 899998876432 2 21 11112222333
Q ss_pred cCCHHHHHHHHHhhc
Q 031213 121 APNAKELVQKLEEYV 135 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (164)
.+|++++.+.|.+..
T Consensus 350 ~~d~~~la~~i~~ll 364 (396)
T cd03818 350 FFDPDALAAAVIELL 364 (396)
T ss_pred CCCHHHHHHHHHHHH
Confidence 568888888887654
No 87
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=46.56 E-value=56 Score=29.32 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=35.3
Q ss_pred CCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC-----ccchHHHHHHHH
Q 031213 53 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----GYYNSLLNFIDK 103 (164)
Q Consensus 53 sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~-----gfw~~l~~~l~~ 103 (164)
.|+|||.= |.=||+|-..++++.- ..+|||||.+.. -..|....++..
T Consensus 153 ~dGvVVtH-GTDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAH-GTDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEec-CCchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 79999987 5899999999998755 458999998752 244555555443
No 88
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=46.53 E-value=46 Score=28.68 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=43.4
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCcc-chHHHHHHHHHHHcCCCCcc
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY-YNSLLNFIDKAVDDGFISPS 113 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gf-w~~l~~~l~~~~~egfi~~~ 113 (164)
-|+..||++|+---++.-..|... ..||+.++-.++| -..+.-|++++++++...+-
T Consensus 240 ~~La~Adyii~TaDSinM~sEAas---------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f 297 (329)
T COG3660 240 DMLAAADYIISTADSINMCSEAAS---------TGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPF 297 (329)
T ss_pred HHHhhcceEEEecchhhhhHHHhc---------cCCCeEEEecCCcchHHHHHHHHHHHHhhhcccc
Confidence 578889999998888887777652 3899999988888 55566677888877655443
No 89
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=46.00 E-value=55 Score=29.23 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=28.6
Q ss_pred CCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 53 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 53 sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
.|+|||.=| .=||+|-..++++.--+ .+|||||.+.
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGA 175 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGA 175 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECC
Confidence 689998875 89999999988864322 3899999875
No 90
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=45.65 E-value=95 Score=26.97 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCeEEEcc--------CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCcccc
Q 031213 44 QRKAEMARNSDCFIALP--------GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQR 115 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlP--------GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~ 115 (164)
+....++..||+||.-- -|+|. =++|++.. .+|+|..+..|. .+ ++. +...
T Consensus 290 ~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~--~llEAma~------G~PVI~t~~~g~----~E----~v~-----~~~~ 348 (406)
T PRK15427 290 HEVKAMLDDADVFLLPSVTGADGDMEGIPV--ALMEAMAV------GIPVVSTLHSGI----PE----LVE-----ADKS 348 (406)
T ss_pred HHHHHHHHhCCEEEECCccCCCCCccCccH--HHHHHHhC------CCCEEEeCCCCc----hh----hhc-----CCCc
Confidence 44456788999987531 34443 57778765 899998876542 12 121 1122
Q ss_pred CCeEEcCCHHHHHHHHHhhcC
Q 031213 116 SILVSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 116 ~~i~~~~~~ee~~~~l~~~~~ 136 (164)
..++-.+|++++.+.|.+...
T Consensus 349 G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 349 GWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred eEEeCCCCHHHHHHHHHHHHh
Confidence 233335688888888877643
No 91
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=45.47 E-value=23 Score=31.52 Aligned_cols=40 Identities=20% Similarity=0.487 Sum_probs=32.9
Q ss_pred chH-HHHHHHHHHHcCCCCccccCCe---EEcCCHHHHHHHHHh
Q 031213 94 YNS-LLNFIDKAVDDGFISPSQRSIL---VSAPNAKELVQKLEE 133 (164)
Q Consensus 94 w~~-l~~~l~~~~~egfi~~~~~~~i---~~~~~~ee~~~~l~~ 133 (164)
|.. +-+-|+.|+.+|.|+++..+.+ .++.+++|+.+.+++
T Consensus 255 ~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~ 298 (386)
T PLN02668 255 FGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEA 298 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhh
Confidence 444 5555788999999999977655 889999999999985
No 92
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=45.24 E-value=90 Score=22.72 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=46.4
Q ss_pred EeecCCH-HHHHHHHHHhCCeEEEccC--CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCc
Q 031213 36 VKPVADM-HQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISP 112 (164)
Q Consensus 36 l~i~~~m-~~Rk~~m~~~sDafIvlPG--G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~ 112 (164)
+.+.... .+....++..||++|..-- |+|+ =+.|++.. .+|+++-+.. .+..+ +.++
T Consensus 75 i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~~------g~pvI~~~~~-~~~e~-------~~~~---- 134 (172)
T PF00534_consen 75 IIFLGYVPDDELDELYKSSDIFVSPSRNEGFGL--SLLEAMAC------GCPVIASDIG-GNNEI-------INDG---- 134 (172)
T ss_dssp EEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHHT------T-EEEEESST-HHHHH-------SGTT----
T ss_pred ccccccccccccccccccceecccccccccccc--cccccccc------ccceeecccc-CCcee-------eccc----
Confidence 3333433 5777888999998887744 3333 56666654 8999988743 33322 2221
Q ss_pred cccCCeEEcCCHHHHHHHHHhhc
Q 031213 113 SQRSILVSAPNAKELVQKLEEYV 135 (164)
Q Consensus 113 ~~~~~i~~~~~~ee~~~~l~~~~ 135 (164)
....++-..+++++.+.|.+..
T Consensus 135 -~~g~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 135 -VNGFLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp -TSEEEESTTSHHHHHHHHHHHH
T ss_pred -cceEEeCCCCHHHHHHHHHHHH
Confidence 1223444557899988887754
No 93
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=45.20 E-value=1.1e+02 Score=24.55 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCeEEEc---cCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 44 QRKAEMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvl---PGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
+.....+..||+++.. ..|+|. =++|+++. .+|+|..+..|. ..+ +++| .. -.+
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~~--~~lEAma~------G~PvI~~~~~~~-~e~-------i~~~------~~-g~l 291 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFGL--VMIEAMAC------GTPVIAFRRGAV-PEV-------VEDG------VT-GFL 291 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcch--HHHHHHhc------CCCEEEeCCCCc-hhh-------eeCC------Cc-EEE
Confidence 3445678899988875 357776 37788765 899999887542 222 2111 11 223
Q ss_pred cCCHHHHHHHHHhh
Q 031213 121 APNAKELVQKLEEY 134 (164)
Q Consensus 121 ~~~~ee~~~~l~~~ 134 (164)
+++++++.+.|.+.
T Consensus 292 ~~~~~~l~~~l~~l 305 (335)
T cd03802 292 VDSVEELAAAVARA 305 (335)
T ss_pred eCCHHHHHHHHHHH
Confidence 44588888888765
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=44.73 E-value=70 Score=27.70 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCC-------cc-ccCCeEE
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFIS-------PS-QRSILVS 120 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~-------~~-~~~~i~~ 120 (164)
.+..||++|+-. |..|+ |++.. .+|+|+...-..+.-+.. ++++.-.++. .+ ..+.+.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a~---------G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAALI---------KTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHHc---------CCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 567888666555 66676 66532 899998765433333222 1222212211 11 1222223
Q ss_pred cCCHHHHHHHHHhhcC
Q 031213 121 APNAKELVQKLEEYVP 136 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~~ 136 (164)
.-+++.+.+.+.+...
T Consensus 331 ~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 331 ECTPHPLAIALLLLLE 346 (385)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 3368888888877653
No 95
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=44.43 E-value=30 Score=27.30 Aligned_cols=62 Identities=24% Similarity=0.447 Sum_probs=39.8
Q ss_pred EEccCCCcCHHHHHHHHHHHHcC-CCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccC-CeEEc-CCHHHHHHHHH
Q 031213 57 IALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRS-ILVSA-PNAKELVQKLE 132 (164)
Q Consensus 57 IvlPGG~GTLdEl~e~~t~~qlg-~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~-~i~~~-~~~ee~~~~l~ 132 (164)
|+|.||.|| -+..+. ..+||++-+... + ++++. |+++...|+ .+ ++++. ...+.+.++++
T Consensus 3 vIla~G~Gt--------Rl~plt~~~pK~ll~i~g~-~--pli~~~l~~l~~~g~-----~~ii~V~~~~~~~~i~~~~~ 66 (248)
T PF00483_consen 3 VILAGGKGT--------RLRPLTDTIPKPLLPIGGK-Y--PLIDYVLENLANAGI-----KEIIVVVNGYKEEQIEEHLG 66 (248)
T ss_dssp EEEEESCCG--------GGTTTTTTSSGGGSEETTE-E--EHHHHHHHHHHHTTC-----SEEEEEEETTTHHHHHHHHT
T ss_pred EEECCCCCc--------cCchhhhccccccceecCC-C--cchhhhhhhhcccCC-----ceEEEEEeeccccccccccc
Confidence 788999999 122222 358999887632 2 77775 578887765 34 33444 56677777777
Q ss_pred hh
Q 031213 133 EY 134 (164)
Q Consensus 133 ~~ 134 (164)
+.
T Consensus 67 ~~ 68 (248)
T PF00483_consen 67 SG 68 (248)
T ss_dssp TS
T ss_pred cc
Confidence 65
No 96
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=44.12 E-value=72 Score=25.98 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 42 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 42 m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
+..+....++.||.+|++ ||=-.+.-+..+.+.-....|++++|.+. .+ + +....--+++.
T Consensus 165 ~~~~~~~~~~~aDlllvv----GTSl~V~pa~~l~~~~~~~~~~v~iN~~~--~~------------~-~~~~~~d~~~~ 225 (235)
T cd01408 165 FFSHMEEDKEEADLLIVI----GTSLKVAPFASLPSRVPSEVPRVLINREP--VG------------H-LGKRPFDVALL 225 (235)
T ss_pred HHHHHHHHHhcCCEEEEE----CCCCeeccHHHHHHHHhCCCcEEEEeCCC--CC------------C-CCCCCcCEEEe
Confidence 345666778889998885 44333333333332223468999999752 00 0 00112236777
Q ss_pred CCHHHHHHHH
Q 031213 122 PNAKELVQKL 131 (164)
Q Consensus 122 ~~~ee~~~~l 131 (164)
.+.+|++..|
T Consensus 226 ~~~~~~l~~~ 235 (235)
T cd01408 226 GDCDDGVREL 235 (235)
T ss_pred CCHHHHHHhC
Confidence 8888877643
No 97
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=43.67 E-value=85 Score=21.88 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=40.7
Q ss_pred EeecCCHHHHHHHHHHhCCeEEEcc-CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccc
Q 031213 36 VKPVADMHQRKAEMARNSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQ 114 (164)
Q Consensus 36 l~i~~~m~~Rk~~m~~~sDafIvlP-GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~ 114 (164)
+.....+ +....++..+|..|..- =+.|+-.-++|.+.. .+|++..+. + +..+.. ...
T Consensus 55 v~~~g~~-~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~------G~pvi~~~~-~-~~~~~~------------~~~ 113 (135)
T PF13692_consen 55 VRFHGFV-EELPEILAAADVGLIPSRFNEGFPNKLLEAMAA------GKPVIASDN-G-AEGIVE------------EDG 113 (135)
T ss_dssp EEEE-S--HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCT------T--EEEEHH-H-CHCHS---------------S
T ss_pred EEEcCCH-HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHh------CCCEEECCc-c-hhhhee------------ecC
Confidence 3334444 45667788899877532 134666777777754 899998764 2 222211 112
Q ss_pred cCCeEEcCCHHHHHHHHHhh
Q 031213 115 RSILVSAPNAKELVQKLEEY 134 (164)
Q Consensus 115 ~~~i~~~~~~ee~~~~l~~~ 134 (164)
.. +.+.+|++++.+.|.+.
T Consensus 114 ~~-~~~~~~~~~l~~~i~~l 132 (135)
T PF13692_consen 114 CG-VLVANDPEELAEAIERL 132 (135)
T ss_dssp EE-EE-TT-HHHHHHHHHHH
T ss_pred Ce-EEECCCHHHHHHHHHHH
Confidence 23 44499999999998765
No 98
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=43.67 E-value=1.2e+02 Score=25.02 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=24.8
Q ss_pred HHHHHhCCeEEEccCCCcCHHHHHH--HHHHHH-cCCCCccEEEEecCcc
Q 031213 47 AEMARNSDCFIALPGGYGTLEELLE--VITWAQ-LGIHDKPVGLINVDGY 93 (164)
Q Consensus 47 ~~m~~~sDafIvlPGG~GTLdEl~e--~~t~~q-lg~~~kPivlln~~gf 93 (164)
.-+...+|++++ |+||+.+-.. +....+ ...+++|+| ++..+.
T Consensus 49 ~~~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~~ 94 (263)
T PRK09355 49 EEMAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVGV 94 (263)
T ss_pred HHHHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCccc
Confidence 344678899888 6666654322 222222 234578976 666553
No 99
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=43.07 E-value=31 Score=29.21 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHh-----CCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHc-CCCC
Q 031213 39 VADMHQRKAEMARN-----SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDD-GFIS 111 (164)
Q Consensus 39 ~~~m~~Rk~~m~~~-----sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~e-gfi~ 111 (164)
..+=.+|-+-+.+. .||++..-||.|+. ++..-+.+..+..++|+++ | |+++-.++..+... |++.
T Consensus 48 ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi-----G-ySDiTaL~~al~~~~g~~t 119 (308)
T cd07062 48 SASPEERAEELMAAFADPSIKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI-----G-YSDITALHLAIYKKTGLVT 119 (308)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE-----e-ccHHHHHHHHHHHhcCCeE
Confidence 45556776665543 58999999999984 6777777777776777655 3 45555544444444 5543
No 100
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=43.05 E-value=1.9e+02 Score=25.48 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=42.4
Q ss_pred CCeEE-EccCCCcCHHHHHHHHHHHHcC-CCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHH
Q 031213 53 SDCFI-ALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQK 130 (164)
Q Consensus 53 sDafI-vlPGG~GTLdEl~e~~t~~qlg-~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~ 130 (164)
.|+++ .++||+.-.+++.+.+.-..-. ..+||+++ ...| ..-.+..+.+.+.|+ .++..+|.+|+.+.
T Consensus 311 VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv-~l~G--~~~e~~~~iL~~~Gi-------pvf~~~~~~~a~~~ 380 (392)
T PRK14046 311 VKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVV-RLAG--TNVEEGRKILAESGL-------PIITADTLAEAAEK 380 (392)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEE-EcCC--CCHHHHHHHHHHcCC-------CeeecCCHHHHHHH
Confidence 45644 4568888778888777643322 25789954 4444 111122122333343 37888999999988
Q ss_pred HHhh
Q 031213 131 LEEY 134 (164)
Q Consensus 131 l~~~ 134 (164)
.-+.
T Consensus 381 ~v~~ 384 (392)
T PRK14046 381 AVEA 384 (392)
T ss_pred HHHH
Confidence 7653
No 101
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=43.05 E-value=32 Score=23.58 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHHcCCCCccEEEEecCccchHHHHHHHH-HHHcCCCCccccCCeEEcCCHHHHHHHHHhh
Q 031213 75 WAQLGIHDKPVGLINVDGYYNSLLNFIDK-AVDDGFISPSQRSILVSAPNAKELVQKLEEY 134 (164)
Q Consensus 75 ~~qlg~~~kPivlln~~gfw~~l~~~l~~-~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (164)
+.+.+.+-+|++.++.+|..+.+.+.++. +-....+.=+... ...++.+++.+.|++.
T Consensus 9 Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~ 67 (84)
T PF01985_consen 9 LRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEK 67 (84)
T ss_dssp HHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHH
Confidence 33444556999999999999999999875 4443333222222 1233456666666654
No 102
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.73 E-value=1.2e+02 Score=25.10 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH
Q 031213 65 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF 100 (164)
Q Consensus 65 TLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~ 100 (164)
||+-+++......-.-...||+|+ |||+|++..
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888887765444457899998 699998764
No 103
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=42.04 E-value=85 Score=24.82 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=38.8
Q ss_pred HHHHHHhCCeEEEccCCC-cCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCH
Q 031213 46 KAEMARNSDCFIALPGGY-GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 124 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~-GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ 124 (164)
...++..||++|. |... |.-.=+.|++.. .+|+|..+..+ ... .+.. .| .++-.+|+
T Consensus 262 ~~~~~~~adi~v~-ps~~e~~~~~~~Ea~a~------g~PvI~~~~~~-~~e---~~~~---~g--------~~~~~~~~ 319 (365)
T cd03807 262 VPALLNALDVFVL-SSLSEGFPNVLLEAMAC------GLPVVATDVGD-NAE---LVGD---TG--------FLVPPGDP 319 (365)
T ss_pred HHHHHHhCCEEEe-CCccccCCcHHHHHHhc------CCCEEEcCCCC-hHH---Hhhc---CC--------EEeCCCCH
Confidence 3456788997664 4322 111236666654 89999876543 222 2111 22 23445688
Q ss_pred HHHHHHHHhhc
Q 031213 125 KELVQKLEEYV 135 (164)
Q Consensus 125 ee~~~~l~~~~ 135 (164)
+++.+.|.+..
T Consensus 320 ~~l~~~i~~l~ 330 (365)
T cd03807 320 EALAEAIEALL 330 (365)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 104
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=41.66 E-value=97 Score=27.93 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=52.8
Q ss_pred EeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCcc
Q 031213 36 VKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPS 113 (164)
Q Consensus 36 l~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~ 113 (164)
++++..=.-||-+=...++++++-|==+|||.|.+++..+.+-.- -+||+.-....==|..++-|.-....|+|+..
T Consensus 311 LfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 311 LFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred ceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 333333356777777789999999999999999999998876432 26777664433345555655555666666543
No 105
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=41.45 E-value=55 Score=27.44 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHc-CCCCccEEEEecCc-cchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 43 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~ql-g~~~kPivlln~~g-fw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
.+|....++.+|.+|+ +||=-.+.-+..+.+. ..++.|+|++|.+. .++. .-.+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~------------------~~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADP------------------LLTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCc------------------ceeEEE
Confidence 5666777888998888 6776565544333222 23567999999753 1111 113688
Q ss_pred cCCHHHHHHHHHhhcCC
Q 031213 121 APNAKELVQKLEEYVPL 137 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~~~ 137 (164)
..+..+++..|.+....
T Consensus 263 ~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 263 EASCAQALAALVARLGL 279 (285)
T ss_pred eCCHHHHHHHHHHHhCC
Confidence 88999999999764433
No 106
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=40.81 E-value=39 Score=26.47 Aligned_cols=62 Identities=10% Similarity=0.225 Sum_probs=36.7
Q ss_pred EEEccCCCcCH-HHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCeEE-cCCHHHHHHHHH
Q 031213 56 FIALPGGYGTL-EELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSILVS-APNAKELVQKLE 132 (164)
Q Consensus 56 fIvlPGG~GTL-dEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i~~-~~~~ee~~~~l~ 132 (164)
.|+|.||.||- ..+. ...+||++=++ | .+++++ |+++...|+ .+.+++ ....+.+.+++.
T Consensus 3 aiIla~G~g~Rl~plt--------~~~pK~llpi~--g--~piI~~~l~~l~~~Gi-----~~I~iv~~~~~~~i~~~l~ 65 (217)
T cd04197 3 AVVLADSFNRRFRPLT--------KEKPRCLLPLA--N--VPLIDYTLEFLALNGV-----EEVFVFCCSHSDQIKEYIE 65 (217)
T ss_pred EEEEcCCCcccccccc--------cCCCceeeEEC--C--EehHHHHHHHHHHCCC-----CeEEEEeCCCHHHHHHHHh
Confidence 47889999992 1111 12356665544 5 367775 577887764 233333 344777888887
Q ss_pred hh
Q 031213 133 EY 134 (164)
Q Consensus 133 ~~ 134 (164)
+.
T Consensus 66 ~~ 67 (217)
T cd04197 66 KS 67 (217)
T ss_pred hc
Confidence 64
No 107
>PRK13337 putative lipid kinase; Reviewed
Probab=40.80 E-value=1.7e+02 Score=24.41 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=21.9
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEE
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLI 88 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~~~kPivll 88 (164)
-.|+.-||=||+.|+...+.- . .++.|+.++
T Consensus 59 d~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgii 89 (304)
T PRK13337 59 DLVIAAGGDGTLNEVVNGIAE--K-ENRPKLGII 89 (304)
T ss_pred CEEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEE
Confidence 368889999999999977632 1 123577665
No 108
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.25 E-value=1.3e+02 Score=24.00 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCeEEEccC---CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 44 QRKAEMARNSDCFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlPG---G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
+-....+..||++|. |. |+|. =++|+++. .+|++..+..+. ..++ . +.....+.-
T Consensus 258 ~~~~~~~~~~d~~l~-~s~~e~~~~--~~lEa~a~------g~PvI~~~~~~~-~~~i-------~-----~~~~g~~~~ 315 (364)
T cd03814 258 EELAAAYASADVFVF-PSRTETFGL--VVLEAMAS------GLPVVAPDAGGP-ADIV-------T-----DGENGLLVE 315 (364)
T ss_pred HHHHHHHHhCCEEEE-CcccccCCc--HHHHHHHc------CCCEEEcCCCCc-hhhh-------c-----CCcceEEcC
Confidence 334567888998764 43 3343 26677764 899998776432 2211 1 112233444
Q ss_pred cCCHHHHHHHHHhhc
Q 031213 121 APNAKELVQKLEEYV 135 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (164)
.++.+++.+.|.+..
T Consensus 316 ~~~~~~l~~~i~~l~ 330 (364)
T cd03814 316 PGDAEAFAAALAALL 330 (364)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566777777777654
No 109
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=39.86 E-value=1.5e+02 Score=23.50 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 44 QRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
+...-++..||++|.-. .|+|+ =++|++.. .+|+|..+..| +..+.. . . ..+.+.
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~--~~~Eama~------G~PvI~~~~~~-~~~~~~---~--~---------~~~~~~ 329 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGI--VVAEALAC------GTPVVTTDKVP-WQELIE---Y--G---------CGWVVD 329 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCc--HHHHHHhc------CCCEEEcCCCC-HHHHhh---c--C---------ceEEeC
Confidence 35555678899877543 56666 47777765 89999887643 332221 1 2 224445
Q ss_pred CCHHHHHHHHHhhcC
Q 031213 122 PNAKELVQKLEEYVP 136 (164)
Q Consensus 122 ~~~ee~~~~l~~~~~ 136 (164)
++++++.+.|.+...
T Consensus 330 ~~~~~~~~~i~~l~~ 344 (375)
T cd03821 330 DDVDALAAALRRALE 344 (375)
T ss_pred CChHHHHHHHHHHHh
Confidence 566888887776543
No 110
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=39.82 E-value=1.1e+02 Score=25.87 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=24.6
Q ss_pred HHHHHHHhCCeEEEccCCCcCHHHHHHHHHH
Q 031213 45 RKAEMARNSDCFIALPGGYGTLEELLEVITW 75 (164)
Q Consensus 45 Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~ 75 (164)
-.+++.++++.-|+..+|+||-+....++.+
T Consensus 180 ~l~~i~e~~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 180 NLQIIIENAKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HHHHHHHcCCCcEEEeCCcCCHHHHHHHHHc
Confidence 3456778888888888888888888888765
No 111
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=39.66 E-value=1.9e+02 Score=23.36 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCeEEEcc---CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeE
Q 031213 43 HQRKAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlP---GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~ 119 (164)
.+-....+..||++|... .|+|+ =++|+++. .+|+|..+..| ...+.. ++ ....++
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a~------G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~ 312 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGR--TAVEAQAM------GRPVIASDHGG-ARETVR-------PG-----ETGLLV 312 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCch--HHHHHHhc------CCCEEEcCCCC-cHHHHh-------CC-----CceEEe
Confidence 445566788899887643 45664 46777765 89999987643 333222 11 122344
Q ss_pred EcCCHHHHHHHHHhh
Q 031213 120 SAPNAKELVQKLEEY 134 (164)
Q Consensus 120 ~~~~~ee~~~~l~~~ 134 (164)
-.+|++++.+.|+..
T Consensus 313 ~~~~~~~l~~~i~~~ 327 (355)
T cd03819 313 PPGDAEALAQALDQI 327 (355)
T ss_pred CCCCHHHHHHHHHHH
Confidence 467899999888543
No 112
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=39.55 E-value=1e+02 Score=24.28 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 43 HQRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
.+....++..||++|... .|+|+ =+.|++.. .+|++.-+..+ ...+ +.++ ....+.-
T Consensus 269 ~~~~~~~~~~ad~~i~~~~~~~~~~--~~~Ea~~~------G~pvI~~~~~~-~~~~-------~~~~-----~~g~~~~ 327 (377)
T cd03798 269 HEEVPAYYAAADVFVLPSLREGFGL--VLLEAMAC------GLPVVATDVGG-IPEI-------ITDG-----ENGLLVP 327 (377)
T ss_pred HHHHHHHHHhcCeeecchhhccCCh--HHHHHHhc------CCCEEEecCCC-hHHH-------hcCC-----cceeEEC
Confidence 345567788899877543 34454 36667654 89999876543 2221 1111 1123455
Q ss_pred cCCHHHHHHHHHhhcCC
Q 031213 121 APNAKELVQKLEEYVPL 137 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~~~ 137 (164)
.+|++++.+.|.+....
T Consensus 328 ~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 328 PGDPEALAEAILRLLAD 344 (377)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 67899988888776543
No 113
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.53 E-value=82 Score=26.23 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=29.7
Q ss_pred EccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHH-----HHHHHHHcCC
Q 031213 58 ALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDGF 109 (164)
Q Consensus 58 vlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~-----~l~~~~~egf 109 (164)
+|-.|+ |++.+++.+.-.+-...+.|++++ +||+++.. |++.+.+.|.
T Consensus 66 AL~~G~-~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 66 ALAAGV-TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred HHHcCC-CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 344554 466777776544433457899877 48876544 5677777664
No 114
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=39.39 E-value=46 Score=26.32 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCEEEEEeCCCcccccccCCccceEee---cCCHHHHHHHHHHhCCeEEE
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKP---VADMHQRKAEMARNSDCFIA 58 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i---~~~m~~Rk~~m~~~sDafIv 58 (164)
++|+.+...|..|+=|.-..-.+ .++.+ +.+- +.+|.+.-...+..+|++|.
T Consensus 34 ~lA~~~~~~Ga~V~li~g~~~~~---~p~~~-~~i~v~sa~em~~~~~~~~~~~Di~I~ 88 (185)
T PF04127_consen 34 ALAEEAARRGAEVTLIHGPSSLP---PPPGV-KVIRVESAEEMLEAVKELLPSADIIIM 88 (185)
T ss_dssp HHHHHHHHTT-EEEEEE-TTS-------TTE-EEEE-SSHHHHHHHHHHHGGGGSEEEE
T ss_pred HHHHHHHHCCCEEEEEecCcccc---ccccc-eEEEecchhhhhhhhccccCcceeEEE
Confidence 68999999999999885442211 12233 3332 45788888887888888775
No 115
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=39.35 E-value=85 Score=27.08 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=35.4
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC-----ccchHHHHHHHH
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----GYYNSLLNFIDK 103 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~-----gfw~~l~~~l~~ 103 (164)
+..|+|||.= |.=||+|-...+++.- ...+||||+.+.- -..|....+++.
T Consensus 80 ~~~dG~VVtH-GTDTmeeTA~~L~~~l-~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILH-GTDTMAYTASALSFML-ENLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEee-ccchHHHHHHHHHHHH-hCCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 5579999987 4899999999888643 2348999998741 234555555443
No 116
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=39.05 E-value=1.2e+02 Score=24.61 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCeEEEccC--CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 43 HQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPG--G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
.+....++..||++|.-.- |+|. =++|+++. .+|+|.-+..| ... .+.. ....+..
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~--~~lEAma~------G~PvI~s~~~~-~~~---~i~~----------~~~~~~~ 314 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPL--VLIEAQAS------GLPCILSDTIT-KEV---DLTD----------LVKFLSL 314 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCH--HHHHHHHh------CCCEEEEcCCc-hhh---hhcc----------CccEEeC
Confidence 4445567888998775322 3332 46777765 89999987654 222 1111 1223344
Q ss_pred cCCHHHHHHHHHhhcC
Q 031213 121 APNAKELVQKLEEYVP 136 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~~ 136 (164)
.++++++.+.|.+...
T Consensus 315 ~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 315 DESPEIWAEEILKLKS 330 (358)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4567999888887653
No 117
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=38.70 E-value=29 Score=29.02 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 45 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 45 Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
-.+++.++++.=|++-+|+||.++..+++.+ .---||+|.
T Consensus 166 ~l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp HHHHHHHHGSSSBEEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 3456788889999999999999999999987 555677875
No 118
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=38.05 E-value=1.9e+02 Score=23.03 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=29.3
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccc
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY 94 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw 94 (164)
+.++..+.|+|+||- |...+++.+.-.. ..-=+.+.+++.+.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 345678999999995 6668888775432 1222566667776676
No 119
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=37.85 E-value=53 Score=28.85 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=49.6
Q ss_pred eEEEccCCCcCHHHHHHHHHHHH-cCCCCccEEEEecCc-------------cch-----HHHHHHHHHHHcCC------
Q 031213 55 CFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLINVDG-------------YYN-----SLLNFIDKAVDDGF------ 109 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~q-lg~~~kPivlln~~g-------------fw~-----~l~~~l~~~~~egf------ 109 (164)
++|+|.|-.||+ .+.+ .|....|+..+..+| .|. ..+++|+.+.+..=
T Consensus 5 gviilGgahgtl-------alARSfg~~~vpv~~ls~d~plPt~Sr~vr~t~~w~gphd~gaiafLrd~Aekhglkg~LL 77 (415)
T COG3919 5 GVIILGGAHGTL-------ALARSFGEEFVPVLALSADGPLPTYSRIVRVTTHWNGPHDEGAIAFLRDFAEKHGLKGYLL 77 (415)
T ss_pred ceEEEcccchhH-------HHHHhhccccceEEEEecCCCCcchhhhheeeeccCCCCcccHHHHHHHHHhhcCcCceEE
Confidence 689999999994 2222 344457877766543 222 36777777766431
Q ss_pred CCccccCCeEEcCCHHHHHHHHHhhcCCCCCccccceeccccc
Q 031213 110 ISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQV 152 (164)
Q Consensus 110 i~~~~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~~~~w~~~~~ 152 (164)
+...+.+...+...-||+-++.+-..| .|..++|..+.|
T Consensus 78 va~GDgev~lvSq~reeLSa~f~v~lp----~w~~l~wlceKP 116 (415)
T COG3919 78 VACGDGEVLLVSQYREELSAFFEVPLP----DWALLRWLCEKP 116 (415)
T ss_pred EecCCceeeehHhhHHHHHHHhcCCCC----cHHHHHHHhhCc
Confidence 111233333444445565555543333 478899985544
No 120
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=37.31 E-value=92 Score=26.48 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 50 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 50 ~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
.+..|+||++= |.-||+|....+++.- ...+||||+.+
T Consensus 70 ~~~~~GvVVtH-GTDTme~tA~~Ls~~l-~~l~kPVVlTG 107 (313)
T PF00710_consen 70 LDDYDGVVVTH-GTDTMEETAFFLSLLL-DNLDKPVVLTG 107 (313)
T ss_dssp HTTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE-
T ss_pred HHhcCeEEEec-CchHHHHHHHHHHHHh-cCCCCCEEEeC
Confidence 34588988875 6899999998887642 33379999985
No 121
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=37.16 E-value=2.9e+02 Score=25.31 Aligned_cols=19 Identities=11% Similarity=0.302 Sum_probs=9.5
Q ss_pred HHHHHHhcCCEEEEEeCCC
Q 031213 4 VSHVVHRGGGHVLGIIPKT 22 (164)
Q Consensus 4 va~ga~~~GG~viGIiP~~ 22 (164)
+=++|+.+|++|+-++-..
T Consensus 89 Ak~AAlgAGA~V~~~~a~~ 107 (463)
T TIGR01319 89 AKRAAHGAGAKIANVYAYD 107 (463)
T ss_pred HHHHHhcCCcEEEEEEeec
Confidence 3344555566665554433
No 122
>PRK05920 aromatic acid decarboxylase; Validated
Probab=37.02 E-value=62 Score=26.12 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=50.9
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHH--------HHcCCCCccEEEEecCccchH-HHHHHHHHHHcCCC-CccccCCeEEc
Q 031213 52 NSDCFIALPGGYGTLEELLEVITW--------AQLGIHDKPVGLINVDGYYNS-LLNFIDKAVDDGFI-SPSQRSILVSA 121 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~--------~qlg~~~kPivlln~~gfw~~-l~~~l~~~~~egfi-~~~~~~~i~~~ 121 (164)
.+|++|+.|=..+|+.-+.-=++- ..+ ..++|+++.-.+-+..+ -++.++.+.+.|.. -+.....+.--
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L-~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p 171 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVL-KERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIPAFYHKP 171 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHH-hcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCcccccCCC
Confidence 689999999999998776532221 111 24789998865433343 23446677777753 23333444556
Q ss_pred CCHHHHHHHHH
Q 031213 122 PNAKELVQKLE 132 (164)
Q Consensus 122 ~~~ee~~~~l~ 132 (164)
++.++..+++-
T Consensus 172 ~~~~~~~~f~~ 182 (204)
T PRK05920 172 QTIDDLVDFVV 182 (204)
T ss_pred CCHHHHHHHHH
Confidence 67789988884
No 123
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=37.01 E-value=1.6e+02 Score=24.42 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 44 QRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
+....++..||+++..+ -|+|.. ++|+++. .+|+|..+..| ...+ +.++ ...+.+.
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~--~lEAma~------G~PvI~s~~~~-~~e~-------i~~~------~~g~~~~ 348 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIV--PLEAMYA------GKPVIACNSGG-PLET-------VVDG------ETGFLCE 348 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCch--HHHHHHc------CCCEEEECCCC-cHHH-------hccC------CceEEeC
Confidence 33456788899887643 334442 4677764 89999987654 2222 1111 2234445
Q ss_pred CCHHHHHHHHHhhc
Q 031213 122 PNAKELVQKLEEYV 135 (164)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (164)
.|++++.+.|.+..
T Consensus 349 ~~~~~~a~~i~~l~ 362 (392)
T cd03805 349 PTPEEFAEAMLKLA 362 (392)
T ss_pred CCHHHHHHHHHHHH
Confidence 67888888887654
No 124
>PRK13054 lipid kinase; Reviewed
Probab=36.77 E-value=1e+02 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=22.5
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
-.|+.-||=||+.|+...+.-.. ..++.|+.++-
T Consensus 58 d~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgiiP 91 (300)
T PRK13054 58 ATVIAGGGDGTINEVATALAQLE-GDARPALGILP 91 (300)
T ss_pred CEEEEECCccHHHHHHHHHHhhc-cCCCCcEEEEe
Confidence 36778899999999997763211 12245677663
No 125
>PRK13059 putative lipid kinase; Reviewed
Probab=35.96 E-value=1.9e+02 Score=23.98 Aligned_cols=31 Identities=29% Similarity=0.768 Sum_probs=22.2
Q ss_pred EEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
.|+.-||=||+.|+...+. +.+ .+.|+.++-
T Consensus 59 ~vi~~GGDGTv~evv~gl~--~~~-~~~~lgviP 89 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMK--KLN-IDLPIGILP 89 (295)
T ss_pred EEEEECCccHHHHHHHHHH--hcC-CCCcEEEEC
Confidence 6778899999999997763 222 246777763
No 126
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=35.75 E-value=2.4e+02 Score=24.37 Aligned_cols=88 Identities=15% Similarity=0.009 Sum_probs=49.6
Q ss_pred CHHHHHHHHHH--hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCC-------
Q 031213 41 DMHQRKAEMAR--NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFIS------- 111 (164)
Q Consensus 41 ~m~~Rk~~m~~--~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~------- 111 (164)
++.+=.+.+.+ ..++++...-+.|+-+|-...|- .....+|||+.+-. |-+.+.-.. |...|-|-
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi--~~~~~~KPVVa~~a-Grsap~G~r---~gHaGAi~~~~~G~~ 284 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWI--KNNPIKKPVVSFIA-GITAPPGRR---MGHAGAIISGGKGTA 284 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHH--HhhcCCCcEEEEEe-cCCCCCCCc---ccchhhhhccCCCCH
Confidence 45555555554 56677777777788865543332 22234799999854 566531110 11111110
Q ss_pred -----ccccCCeEEcCCHHHHHHHHHhh
Q 031213 112 -----PSQRSILVSAPNAKELVQKLEEY 134 (164)
Q Consensus 112 -----~~~~~~i~~~~~~ee~~~~l~~~ 134 (164)
.-..--+..++|++|+.+.+++.
T Consensus 285 ~~k~aal~qaGv~v~~~~~el~~~~~~~ 312 (317)
T PTZ00187 285 PGKIEALEAAGVRVVKSPAQLGKTMLEV 312 (317)
T ss_pred HHHHHHHHHCCCeEeCCHHHHHHHHHHH
Confidence 00223468899999999999875
No 127
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=35.56 E-value=1.9e+02 Score=21.70 Aligned_cols=78 Identities=23% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCcc
Q 031213 5 SHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKP 84 (164)
Q Consensus 5 a~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kP 84 (164)
.-++.+-||+++.+-|....-. . -.++.+=-+.|-..+|++|+=-..-|+++|+.+.. ..|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~~~--k---------~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSSLG--K---------GESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSSTT--T---------SSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECcccccCc--C---------CCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 3567889999999965543110 1 23343334478888999999988999999987665 789
Q ss_pred EEEEecCccchHHHHHHH
Q 031213 85 VGLINVDGYYNSLLNFID 102 (164)
Q Consensus 85 ivlln~~gfw~~l~~~l~ 102 (164)
||=... ..+=|-..++|
T Consensus 119 VINa~~-~~~HPtQaL~D 135 (142)
T PF02729_consen 119 VINAGD-DHEHPTQALAD 135 (142)
T ss_dssp EEEEEE-SSBSHHHHHHH
T ss_pred eEcCcC-CCCChHHHHHH
Confidence 875444 35566655555
No 128
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=35.53 E-value=1.9e+02 Score=25.55 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=52.8
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHH
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 125 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~e 125 (164)
+.+.-..+|.|-| -|++| ++++.+.|..+.||.+++ |+|.+-.. +...+ .++...+.|.+
T Consensus 48 ~~l~~~g~~~f~V-----A~l~E---Ai~LR~~gi~~~~IlvL~--g~~~~~~~--~~~~~--------~~l~~~v~s~~ 107 (360)
T COG0787 48 KALLDAGADGFGV-----ASLEE---AIELREAGITGAPILVLE--GFFPAEEL--ELAAA--------YNLTPVVNSLE 107 (360)
T ss_pred HHHHHcCCCEEEE-----CcHHH---HHHHHHcCCCCCCEEEEc--CcCChhhH--HHHHH--------cCCeEEECCHH
Confidence 3343444888854 46666 567788888778999998 67776432 22222 44567888888
Q ss_pred HHHHHHHhhcC-CCCCccccceecccccccc
Q 031213 126 ELVQKLEEYVP-LHDGVVAKVKWEAEQVELN 155 (164)
Q Consensus 126 e~~~~l~~~~~-~~~~~~~~~~w~~~~~~~~ 155 (164)
.+-++.....+ .....+=+++=.|.-.++.
T Consensus 108 ql~~l~~~~~~~~~l~vhLkiDTGM~RlG~~ 138 (360)
T COG0787 108 QLEALKNAALKNKPLKVHLKIDTGMNRLGLR 138 (360)
T ss_pred HHHHHHHhhhhcCceEEEEEECCCCCcCCCC
Confidence 88776655433 2122222344445555444
No 129
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=35.47 E-value=2.2e+02 Score=24.65 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCEEEEEeCCCcccccccCCccceEeec-CCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 12 GGHVLGIIPKTLMNKEITGETVGEVKPV-ADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 12 GG~viGIiP~~~~~~e~~~~~~~el~i~-~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
-|.+|=++|..-..++. ...+. +.+. ..++. .-++..||.+| ||-||+. .|+..| ..|.|-+..
T Consensus 211 ~~~~vV~ipr~~~~~~~-~~~~~-~~i~~~~vd~--~~Ll~~a~l~I---g~ggTMa--~EAA~L------GtPaIs~~~ 275 (335)
T PF04007_consen 211 YGRNVVIIPRYEDQREL-FEKYG-VIIPPEPVDG--LDLLYYADLVI---GGGGTMA--REAALL------GTPAISCFP 275 (335)
T ss_pred hCceEEEecCCcchhhH-HhccC-ccccCCCCCH--HHHHHhcCEEE---eCCcHHH--HHHHHh------CCCEEEecC
Confidence 34435566776543322 12232 2222 22221 14788999877 6666754 455554 889997643
Q ss_pred CccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHhh
Q 031213 91 DGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 134 (164)
Q Consensus 91 ~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (164)
|.+-..-+ .+++.|. ++.+.|++|+++.+.+.
T Consensus 276 -g~~~~vd~---~L~~~Gl--------l~~~~~~~ei~~~v~~~ 307 (335)
T PF04007_consen 276 -GKLLAVDK---YLIEKGL--------LYHSTDPDEIVEYVRKN 307 (335)
T ss_pred -CcchhHHH---HHHHCCC--------eEecCCHHHHHHHHHHh
Confidence 33333323 3566654 68899999999988664
No 130
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.45 E-value=58 Score=27.27 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHc
Q 031213 65 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDD 107 (164)
Q Consensus 65 TLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~e 107 (164)
|++.+++.+.-.+-...+.|++++ +||+++... ++...++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm---~Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLM---TYYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEE---E-HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEE---eeccHHhccchHHHHHH
No 131
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=35.34 E-value=1.5e+02 Score=26.00 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEc
Q 031213 44 QRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 121 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~ 121 (164)
+....++..||+||.-- .|+|. =++|+++. .+|+|..+..|. ..++ ++. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA~------G~PVI~s~~gg~-~eiv-------~~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMAS------GVPVVAARAGGI-PDII-------PPD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHHc------CCCEEEcCCCCc-Hhhh-------hcC--CCCCceEEeCC
Confidence 55667788899887432 34444 36677764 899998876542 2221 110 00112223335
Q ss_pred CCHHHHHHHHHhhc
Q 031213 122 PNAKELVQKLEEYV 135 (164)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (164)
+|++++.+.|.+..
T Consensus 385 ~d~~~la~~i~~ll 398 (465)
T PLN02871 385 GDVDDCVEKLETLL 398 (465)
T ss_pred CCHHHHHHHHHHHH
Confidence 68888888776654
No 132
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.04 E-value=51 Score=27.68 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=24.1
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC
Q 031213 52 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 91 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~ 91 (164)
.+| +|+.-||=||+.+... .. ....|++-+|..
T Consensus 57 ~~d-~vi~iGGDGTlL~a~~-~~-----~~~~pi~gIn~G 89 (277)
T PRK03708 57 DVD-FIIAIGGDGTILRIEH-KT-----KKDIPILGINMG 89 (277)
T ss_pred CCC-EEEEEeCcHHHHHHHH-hc-----CCCCeEEEEeCC
Confidence 456 6667799999998886 21 247899988863
No 133
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=34.01 E-value=1.2e+02 Score=26.66 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=27.8
Q ss_pred CeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 54 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 54 DafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
|+||+.= |.=||+|-...+++.--. +||||+.+.
T Consensus 102 dGvVItH-GTDTmeeTA~~L~l~l~~--~kPVVlTGa 135 (351)
T COG0252 102 DGVVITH-GTDTMEETAFFLSLTLNT--PKPVVLTGA 135 (351)
T ss_pred CeEEEeC-CCchHHHHHHHHHHHhcC--CCCEEEeCC
Confidence 8888876 588999999999876544 899999874
No 134
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=33.73 E-value=48 Score=27.99 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=36.8
Q ss_pred EEEccCCCcC-HHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCe-EEcCCHHHHHHHHH
Q 031213 56 FIALPGGYGT-LEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSIL-VSAPNAKELVQKLE 132 (164)
Q Consensus 56 fIvlPGG~GT-LdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i-~~~~~~ee~~~~l~ 132 (164)
.|+|.||.|| |-.+. ...+||++=++ | .|+++. ++.+.+.|. .+.+ .+....+.+.+++.
T Consensus 6 avILAaG~GTRL~PlT--------~~~PKpLvpV~--g--kPiI~~vl~~l~~~Gi-----~~ivivv~~~~~~i~~~~~ 68 (297)
T TIGR01105 6 AVIPVAGLGMHMLPAT--------KAIPKEMLPIV--D--KPMIQYIVDEIVAAGI-----KEIVLVTHASKNAVENHFD 68 (297)
T ss_pred EEEECCCCCcccCccc--------CCCCceeeEEC--C--EEHHHHHHHHHHHCCC-----CEEEEEecCChHHHHHHHh
Confidence 6899999999 22111 12478887665 4 567775 577877663 2333 44445666666664
No 135
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=33.37 E-value=83 Score=25.81 Aligned_cols=70 Identities=7% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcC-CCCccEEEEecCc-cchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 43 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg-~~~kPivlln~~g-fw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
.+|....++.||.+|++ ||=-.+.-+..+.+.. .+..|++++|... .++. ..-+.+
T Consensus 169 ~~~~~~~~~~aDl~lvi----GTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVM----GSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEe----CcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 46677778899999984 5543444444443322 3578999999742 2222 123678
Q ss_pred cCCHHHHHHHHHhh
Q 031213 121 APNAKELVQKLEEY 134 (164)
Q Consensus 121 ~~~~ee~~~~l~~~ 134 (164)
..+.+|+++.|.++
T Consensus 227 ~~~~~~~l~~l~~~ 240 (244)
T PRK14138 227 NMDVVEFANRVMSE 240 (244)
T ss_pred eCCHHHHHHHHHHH
Confidence 88899998888664
No 136
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=33.09 E-value=2e+02 Score=22.54 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=45.9
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHHHHH-cCCCCccEEEEecCccchH------HHHHHH-HHHHcCCCCccccCCeEE
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLINVDGYYNS------LLNFID-KAVDDGFISPSQRSILVS 120 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t~~q-lg~~~kPivlln~~gfw~~------l~~~l~-~~~~egfi~~~~~~~i~~ 120 (164)
+.++..+.|+|+||- |...+++.+.-.. .+.--+.+.+++.+.+|=+ -..+++ .+.+..-|+++....+..
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 95 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDG 95 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSST
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCC
Confidence 456788999999985 6667777776543 2233367888888888822 222222 233322233333222222
Q ss_pred -cCCHHHHHHHHHh
Q 031213 121 -APNAKELVQKLEE 133 (164)
Q Consensus 121 -~~~~ee~~~~l~~ 133 (164)
.+++++..+..++
T Consensus 96 ~~~~~~~~~~~y~~ 109 (199)
T PF01182_consen 96 EADDPEEAAERYEQ 109 (199)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 4567777766654
No 137
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=33.04 E-value=61 Score=24.97 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=22.8
Q ss_pred HhCCeEEEccCC-----CcCHHHHHHHHHHHHc-CCCCccEEEEecC
Q 031213 51 RNSDCFIALPGG-----YGTLEELLEVITWAQL-GIHDKPVGLINVD 91 (164)
Q Consensus 51 ~~sDafIvlPGG-----~GTLdEl~e~~t~~ql-g~~~kPivlln~~ 91 (164)
..+|.+|+.+|| .+........+.+... ...+||+++++..
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 467777777775 2333222222333333 3468999999864
No 138
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=32.82 E-value=1.1e+02 Score=23.03 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHH----HHHHHHHhCCeEEEccCC
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQ----RKAEMARNSDCFIALPGG 62 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~----Rk~~m~~~sDafIvlPGG 62 (164)
.+.+||++.|=++++|....-...=....-.++++++++|.+ ..+--+..-++++|=-|+
T Consensus 11 qIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~N~I~VPhgS 74 (124)
T PF06849_consen 11 QILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREMNAIFVPHGS 74 (124)
T ss_dssp HHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHTTEEE--BTT
T ss_pred HHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHCCeEEecCCC
Confidence 367999999999999965543221112334567888887754 555555566665554443
No 139
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=32.55 E-value=43 Score=27.08 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=10.3
Q ss_pred EEEccCCCcCHHH
Q 031213 56 FIALPGGYGTLEE 68 (164)
Q Consensus 56 fIvlPGG~GTLdE 68 (164)
.|++|||.|..+.
T Consensus 88 alviPGG~g~~~~ 100 (217)
T PRK11780 88 ALIVPGGFGAAKN 100 (217)
T ss_pred EEEECCCCchhhh
Confidence 6789999998543
No 140
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=32.51 E-value=3.3e+02 Score=23.54 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCeEEEc-cC--CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeE
Q 031213 43 HQRKAEMARNSDCFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvl-PG--G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~ 119 (164)
.+....++..||++|.+ +. |.|--.-++|+++. .+|+|..+..| .. + ++.+| ..-+.
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~------G~PVI~s~~~~-~~---e----iv~~~------~~G~l 364 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGC------GLPVCALDFKC-ID---E----LVKHG------ENGLV 364 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHc------CCCEEEeCCCC-HH---H----HhcCC------CCEEE
Confidence 45555678889998853 21 23334457777764 89999877542 22 2 22221 11223
Q ss_pred EcCCHHHHHHHHHhhcC
Q 031213 120 SAPNAKELVQKLEEYVP 136 (164)
Q Consensus 120 ~~~~~ee~~~~l~~~~~ 136 (164)
+ +|++++.+.|.+...
T Consensus 365 v-~d~~~la~~i~~ll~ 380 (415)
T cd03816 365 F-GDSEELAEQLIDLLS 380 (415)
T ss_pred E-CCHHHHHHHHHHHHh
Confidence 3 689999888877644
No 141
>PLN02275 transferase, transferring glycosyl groups
Probab=32.41 E-value=2.6e+02 Score=23.73 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCeEEEcc-C--CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeE
Q 031213 43 HQRKAEMARNSDCFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlP-G--G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~ 119 (164)
++.-..++..||+||... . |.|--.=++|+++. .+|+|..+.+| ..+ ++.+| ..-+.
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~------G~PVVa~~~gg----~~e----iv~~g------~~G~l 356 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC------GLPVCAVSYSC----IGE----LVKDG------KNGLL 356 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC------CCCEEEecCCC----hHH----HccCC------CCeEE
Confidence 455667789999998631 2 23333457777765 89999887654 112 22221 11222
Q ss_pred EcCCHHHHHHHHHh
Q 031213 120 SAPNAKELVQKLEE 133 (164)
Q Consensus 120 ~~~~~ee~~~~l~~ 133 (164)
+++++++.+.|.+
T Consensus 357 -v~~~~~la~~i~~ 369 (371)
T PLN02275 357 -FSSSSELADQLLE 369 (371)
T ss_pred -ECCHHHHHHHHHH
Confidence 3478888877764
No 142
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=32.41 E-value=58 Score=26.33 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCc
Q 031213 43 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 92 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~g 92 (164)
.++....++.+|.+|+ +||--.+.-++.+.+...+..|++++|.+.
T Consensus 162 ~~~~~~~~~~~Dlllv----iGTSl~v~p~~~l~~~~~~~~~~i~iN~~~ 207 (225)
T cd01411 162 IEEAIQAIEKADLLVI----VGTSFVVYPFAGLIDYRQAGANLIAINKEP 207 (225)
T ss_pred HHHHHHHHhcCCEEEE----ECcCCeehhHHHHHHHHhCCCeEEEECCCC
Confidence 4566777888997777 445445544455444333578999999863
No 143
>PRK10494 hypothetical protein; Provisional
Probab=32.28 E-value=83 Score=26.10 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.8
Q ss_pred HhCCeEEEccCCC
Q 031213 51 RNSDCFIALPGGY 63 (164)
Q Consensus 51 ~~sDafIvlPGG~ 63 (164)
..+|++|||.||.
T Consensus 77 ~~~d~IVVLGgG~ 89 (259)
T PRK10494 77 QKVDYIVVLGGGY 89 (259)
T ss_pred CCCCEEEEcCCCc
Confidence 3589999999986
No 144
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=31.98 E-value=2.2e+02 Score=25.51 Aligned_cols=79 Identities=16% Similarity=0.327 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHH-HHH--HHHHcCCCCccccCC
Q 031213 41 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-FID--KAVDDGFISPSQRSI 117 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~-~l~--~~~~egfi~~~~~~~ 117 (164)
.|..|-..++.-||.+|.+ ||+.|.=||. +. +||.+++-.. .+-.+ +++ .+.+-|.++-=..+.
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCeIL---s~------~k~aLivPr~---~p~eEQliRA~Rl~~LGL~dvL~pe~ 349 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCEIL---SF------GKPALIVPRA---APREEQLIRAQRLEELGLVDVLLPEN 349 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhHHH---hC------CCceEEeccC---CCcHHHHHHHHHHHhcCcceeeCccc
Confidence 4566677788888977776 7899966554 33 8999988532 22223 333 466666554333333
Q ss_pred eEEcCCHHHHHHHHHhhcC
Q 031213 118 LVSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 118 i~~~~~~ee~~~~l~~~~~ 136 (164)
+. ++-+-+.|+...+
T Consensus 350 lt----~~~La~al~~~l~ 364 (400)
T COG4671 350 LT----PQNLADALKAALA 364 (400)
T ss_pred CC----hHHHHHHHHhccc
Confidence 32 5666666665544
No 145
>PRK10307 putative glycosyl transferase; Provisional
Probab=31.67 E-value=3.2e+02 Score=23.17 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCeEEEc--cCCCc--CHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCe
Q 031213 43 HQRKAEMARNSDCFIAL--PGGYG--TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSIL 118 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvl--PGG~G--TLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i 118 (164)
+++...++..||++|+. .++.| ...-++|++.. .+||+..+..|. .+.+.++ ..|+ +
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~------G~PVi~s~~~g~--~~~~~i~---~~G~--------~ 354 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLAS------GRNVVATAEPGT--ELGQLVE---GIGV--------C 354 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHc------CCCEEEEeCCCc--hHHHHHh---CCcE--------E
Confidence 34455567777776542 12211 12234444433 899998765441 2222222 2232 2
Q ss_pred EEcCCHHHHHHHHHhhc
Q 031213 119 VSAPNAKELVQKLEEYV 135 (164)
Q Consensus 119 ~~~~~~ee~~~~l~~~~ 135 (164)
+-.+|++++.+.|.+..
T Consensus 355 ~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 355 VEPESVEALVAAIAALA 371 (412)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 33467888887776653
No 146
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=31.34 E-value=58 Score=22.85 Aligned_cols=46 Identities=11% Similarity=0.351 Sum_probs=31.5
Q ss_pred EecCccchHHHHHHHHHHHcCCCCccccCCeEEc-----CCHHHHHHHHHhhcCC
Q 031213 88 INVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA-----PNAKELVQKLEEYVPL 137 (164)
Q Consensus 88 ln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~-----~~~ee~~~~l~~~~~~ 137 (164)
+..+.+.+.++..+...+.. |.-.++|++. ++|+.+++.+++|...
T Consensus 27 ~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa~ 77 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRAS 77 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHHH
Confidence 34455888888887777653 4556666554 4799999999998654
No 147
>PRK13057 putative lipid kinase; Reviewed
Probab=30.97 E-value=1.2e+02 Score=25.10 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=23.2
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 52 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
..| .|+.-||=||+.|+...+. ..+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 5678899999999997763 1356777764
No 148
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=30.95 E-value=1.6e+02 Score=24.32 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=39.5
Q ss_pred HHHHhCCeEEEccC--CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHH
Q 031213 48 EMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 125 (164)
Q Consensus 48 ~m~~~sDafIvlPG--G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~e 125 (164)
.++..||++|...- |+|. =+.|+++. .+|+|..+....-.. ++. +.....++-..|++
T Consensus 274 ~~~~~ad~~v~~S~~Eg~~~--~~lEAma~------G~PvI~~~~~~g~~~-------~v~-----~~~~G~lv~~~d~~ 333 (372)
T cd04949 274 EVYQKAQLSLLTSQSEGFGL--SLMEALSH------GLPVISYDVNYGPSE-------IIE-----DGENGYLVPKGDIE 333 (372)
T ss_pred HHHhhhhEEEecccccccCh--HHHHHHhC------CCCEEEecCCCCcHH-------Hcc-----cCCCceEeCCCcHH
Confidence 35667887776542 4443 36666654 899999876421221 111 11222233335888
Q ss_pred HHHHHHHhhcC
Q 031213 126 ELVQKLEEYVP 136 (164)
Q Consensus 126 e~~~~l~~~~~ 136 (164)
++.+.|.++..
T Consensus 334 ~la~~i~~ll~ 344 (372)
T cd04949 334 ALAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHHc
Confidence 88888877654
No 149
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=30.74 E-value=96 Score=23.19 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=26.2
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEE
Q 031213 52 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGL 87 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivl 87 (164)
.++-+++||+|.|.-.=-.-++.+.+.|..++=+++
T Consensus 42 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~ 77 (123)
T cd01356 42 IAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVF 77 (123)
T ss_pred ccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEee
Confidence 467899999999998766666666666655555444
No 150
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.62 E-value=1.1e+02 Score=26.15 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=35.0
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC--ccc-----hHHHHHHHHHHHcCC
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYY-----NSLLNFIDKAVDDGF 109 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~--gfw-----~~l~~~l~~~~~egf 109 (164)
+.+| +|+.-||=||+-..+..+ ....+|++=+|.. ||. +.+.+.|+.+.+..|
T Consensus 67 ~~~D-lvi~iGGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMK-FAIVLGGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcC-EEEEEeCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 3456 555568899987665443 3457899988863 566 456666777666554
No 151
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=30.61 E-value=1.9e+02 Score=23.15 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=41.5
Q ss_pred HHHHHhcCC-EEEEEeCCCcccccccCCccceEeecCCH---HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCC
Q 031213 5 SHVVHRGGG-HVLGIIPKTLMNKEITGETVGEVKPVADM---HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGI 80 (164)
Q Consensus 5 a~ga~~~GG-~viGIiP~~~~~~e~~~~~~~el~i~~~m---~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~ 80 (164)
+.+|+++|- .|.-++|+...+ .......++++.+-- .+.........|++++ .+|+|+-+.+..+..... .
T Consensus 28 ~~~a~~~G~g~vt~~~~~~~~~--~~~~~~pe~i~~~~~~~~~~~~~~~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~ 102 (254)
T cd01171 28 ALAALRAGAGLVTVATPPEAAA--VIKSYSPELMVHPLLETDIEELLELLERADAVVI-GPGLGRDEEAAEILEKAL--A 102 (254)
T ss_pred HHHHHHHccCEEEEEECHhhHH--HHHhcCceeeEecccccchHHHHhhhccCCEEEE-ecCCCCCHHHHHHHHHHH--h
Confidence 445566554 666666665432 112233344442210 1112344567787666 555888655555443322 3
Q ss_pred CCccEEEEecCc
Q 031213 81 HDKPVGLINVDG 92 (164)
Q Consensus 81 ~~kPivlln~~g 92 (164)
++.|+| ++.++
T Consensus 103 ~~~pvV-lDa~~ 113 (254)
T cd01171 103 KDKPLV-LDADA 113 (254)
T ss_pred cCCCEE-EEcHH
Confidence 467865 66654
No 152
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=29.91 E-value=1.1e+02 Score=24.09 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=23.7
Q ss_pred HHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 50 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 50 ~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
-...|++|+.|....++++..+.+. .+..|+|+++.
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~-----~~~iPvV~~~~ 90 (275)
T cd06320 55 NKGYKGLLFSPISDVNLVPAVERAK-----KKGIPVVNVND 90 (275)
T ss_pred HhCCCEEEECCCChHHhHHHHHHHH-----HCCCeEEEECC
Confidence 3468999998866555666544432 34678888864
No 153
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=29.55 E-value=20 Score=29.30 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcCCCCCccccceeccccccccccchhh
Q 031213 125 KELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKTE 161 (164)
Q Consensus 125 ee~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 161 (164)
.|+++.|++=..+...+..+ ++..+--+-.||||.|
T Consensus 186 ~eIle~L~~~k~pp~Gprng-R~a~eP~Gg~tsL~~~ 221 (233)
T KOG3196|consen 186 VEILEDLKAGKKPPAGPRNG-RFASEPKGGLTSLKEE 221 (233)
T ss_pred HHHHHHHhcCCCCCCCCCCC-ccccCCCCCccccccC
Confidence 34444454433333223333 6888888888999865
No 154
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=29.45 E-value=1.8e+02 Score=25.34 Aligned_cols=56 Identities=29% Similarity=0.339 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH
Q 031213 41 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF 100 (164)
Q Consensus 41 ~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~ 100 (164)
-|.+-.+.+ ..=|.+|++||+.||.-=+. .-+.|++. ..++|=++..+.=..+.++
T Consensus 170 Ei~~Q~~~~-~~fD~vVva~gs~gT~AGl~--~g~~~~~~-~~~ViG~~v~~~~~~~~~q 225 (323)
T COG2515 170 EIAEQAEQL-LKFDSVVVAPGSGGTHAGLL--VGLAQLGP-DVEVIGIDVSADPEKLKEQ 225 (323)
T ss_pred HHHHHHhhc-cCCCEEEEeCCCcchHHHHH--HHhhhccC-CCceEEEeecCCHHHHHHH
Confidence 333444444 66799999999999976665 34444444 4555555554444444443
No 155
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=29.41 E-value=1.8e+02 Score=20.61 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=36.5
Q ss_pred HcCCCCccEEEEecCccchHHHHHHHH-HHHcCCCCccccCCeEEcCCHHHHHHHHHhhc
Q 031213 77 QLGIHDKPVGLINVDGYYNSLLNFIDK-AVDDGFISPSQRSILVSAPNAKELVQKLEEYV 135 (164)
Q Consensus 77 qlg~~~kPivlln~~gfw~~l~~~l~~-~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (164)
..+.+=+|++.++.+|.-+.+++.++. +-....|.-+-... .-++..|+.+.|+...
T Consensus 11 ~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~--~~~~~~e~a~~i~~~~ 68 (95)
T TIGR00253 11 GKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATE--DREDKTLIAEALVKET 68 (95)
T ss_pred HHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCC--ChhHHHHHHHHHHHHH
Confidence 334456999999999999999999875 55444443322111 1245666777776543
No 156
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=29.29 E-value=3.4e+02 Score=23.50 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=39.9
Q ss_pred CCeEE-EccCCCcCHHHHHHHHHHHHcCC-CCccEEEEecCc-cchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHH
Q 031213 53 SDCFI-ALPGGYGTLEELLEVITWAQLGI-HDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 129 (164)
Q Consensus 53 sDafI-vlPGG~GTLdEl~e~~t~~qlg~-~~kPivlln~~g-fw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~ 129 (164)
.|+++ .++||+.-.+++.+.+.-..-.. ++||+++. ..| -.+... +.+.+.|+ .+.+.++++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~-~~g~~~~~~~---~~L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVR-LEGTNVEEGK---KILAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCccHHHHH---HHHHHcCC-------CccccCCHHHHHH
Confidence 35644 46788888888887766432221 34899554 334 222222 22333342 2567889998887
Q ss_pred HHHh
Q 031213 130 KLEE 133 (164)
Q Consensus 130 ~l~~ 133 (164)
.+-+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 6643
No 157
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.20 E-value=83 Score=26.41 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=14.5
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHH
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVIT 74 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t 74 (164)
.+.+..+.-|+.-||+||.++..+++.
T Consensus 169 ~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 169 IIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 334444555555555555555555554
No 158
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.14 E-value=1.1e+02 Score=24.42 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
++-+..|++|+.|......++....+. ..+.|+|+++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444668999999876555555543332 23568887764
No 159
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=29.11 E-value=44 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHHHHHhCCeEEEcc-----CCCcCHHHHHHHHHHHHcCCCCccEEEE
Q 031213 46 KAEMARNSDCFIALP-----GGYGTLEELLEVITWAQLGIHDKPVGLI 88 (164)
Q Consensus 46 k~~m~~~sDafIvlP-----GG~GTLdEl~e~~t~~qlg~~~kPivll 88 (164)
-+.+++.+|++|++. =+.|+--|+-.+.++ ++||.++
T Consensus 73 d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~------~~~V~~~ 114 (116)
T PF09152_consen 73 DRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEM------GMPVFLY 114 (116)
T ss_dssp HHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHT------T-EEEEH
T ss_pred hHHHHHhcceeEEecCCCccccccHHHHHHHHHHc------CCeEEEe
Confidence 346788999999986 477888888877765 7888864
No 160
>PHA03359 UL17 tegument protein; Provisional
Probab=28.84 E-value=29 Score=33.17 Aligned_cols=13 Identities=23% Similarity=0.779 Sum_probs=11.5
Q ss_pred CeEEEccCCCcCH
Q 031213 54 DCFIALPGGYGTL 66 (164)
Q Consensus 54 DafIvlPGG~GTL 66 (164)
++.||||||++--
T Consensus 649 ~~~vVfPGGF~~~ 661 (686)
T PHA03359 649 HALVVFPGGFALE 661 (686)
T ss_pred CEEEEecCcceEE
Confidence 7999999999963
No 161
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=28.47 E-value=81 Score=21.01 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHhh
Q 031213 93 YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 134 (164)
Q Consensus 93 fw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (164)
=|+.+...|+.+.+.|++ ......+.+++--.++++.++++
T Consensus 32 ~~~~~~~yL~~L~~~gLI-~~~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 32 NYSTLKKYLKELEEKGLI-KKKDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp -HHHHHHHHHHHHHTTSE-EEETTEEEE-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCe-eCCCCEEEECccHHHHHHHHHHH
Confidence 356677888999999999 44777888898888988888765
No 162
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=28.44 E-value=2.2e+02 Score=20.33 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=46.5
Q ss_pred HHhcCCEEEEEeCCCcccccccCCccceEeecCCHHH--HHHHHH--HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCc
Q 031213 8 VHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQ--RKAEMA--RNSDCFIALPGGYGTLEELLEVITWAQLGIHDK 83 (164)
Q Consensus 8 a~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~--Rk~~m~--~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~k 83 (164)
|.++|--+.|. +... .........-++++.|..+ |+.+.- +....-++-. ||-+|+..++ |....
T Consensus 12 A~rAGklv~G~--~~v~-~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~---~t~~eLg~a~-----Gk~~~ 80 (104)
T PRK05583 12 TKKAGKLLEGY--NKCE-EAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG---YSKEELGNAI-----GRDEI 80 (104)
T ss_pred HHHhCCeeecH--HHHH-HHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe---cCHHHHHHHh-----CCCCe
Confidence 56678788885 1111 1112233444556777743 444432 4455544333 6889999776 33222
Q ss_pred cEEEEecCccchHHHHHHH
Q 031213 84 PVGLINVDGYYNSLLNFID 102 (164)
Q Consensus 84 Pivlln~~gfw~~l~~~l~ 102 (164)
-++.+...||.+.+++.++
T Consensus 81 ~~iai~d~g~a~~l~~~~~ 99 (104)
T PRK05583 81 KILGVKDKNMAKKLLKLWN 99 (104)
T ss_pred EEEEEeChHHHHHHHHHHH
Confidence 2444445679998888655
No 163
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.39 E-value=61 Score=33.32 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=41.6
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHH-HHHHcCCCCcc
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFID-KAVDDGFISPS 113 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~-~~~~egfi~~~ 113 (164)
..+++-||.+|+.=+.+..+- ..+.|++++...|--.++++++. .....|.++..
T Consensus 271 vc~v~eGg~nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~ 326 (1381)
T KOG3614|consen 271 VCLVLEGGPNTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDA 326 (1381)
T ss_pred EEEEecCCchHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHH
Confidence 478999999999888777653 34669999999999999999875 45555554443
No 164
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=28.23 E-value=1.3e+02 Score=23.68 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
+..+..|++|+.|.....+++....+. ..+.|+++++.
T Consensus 56 ~~~~~vdgiIi~~~~~~~~~~~l~~~~-----~~~iPvv~~~~ 93 (272)
T cd06300 56 LIAQGVDAIIINPASPTALNPVIEEAC-----EAGIPVVSFDG 93 (272)
T ss_pred HHHcCCCEEEEeCCChhhhHHHHHHHH-----HCCCeEEEEec
Confidence 445588999999976655555543332 23678888774
No 165
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=27.98 E-value=2.2e+02 Score=21.79 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=31.6
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCeEEcCCHHHHHHHHHh
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSILVSAPNAKELVQKLEE 133 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~ 133 (164)
+.|++-||-|+ +..+|++.-++ | .+++++ ++.+...+.+ +.++++.+.+++.+.+.+
T Consensus 3 ~~iIlA~G~s~-------------R~~~K~l~~l~--G--kpll~~~l~~l~~~~~~-----~~IvV~~~~~~i~~~~~~ 60 (223)
T cd02513 3 LAIIPARGGSK-------------GIPGKNIRPLG--G--KPLIAWTIEAALESKLF-----DRVVVSTDDEEIAEVARK 60 (223)
T ss_pred EEEEecCCCCC-------------CCCCcccchhC--C--ccHHHHHHHHHHhCCCC-----CEEEEECCcHHHHHHHHH
Confidence 35777777775 22357766555 3 556555 3455544433 234455555666666554
Q ss_pred h
Q 031213 134 Y 134 (164)
Q Consensus 134 ~ 134 (164)
+
T Consensus 61 ~ 61 (223)
T cd02513 61 Y 61 (223)
T ss_pred h
Confidence 3
No 166
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.59 E-value=84 Score=26.17 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=22.0
Q ss_pred EEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
.|+.-||=||+.|+...+. ..+.|+.++-
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgiiP 95 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGIIP 95 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEEe
Confidence 6778899999999987662 2356777764
No 167
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=27.30 E-value=79 Score=26.81 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC
Q 031213 47 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 91 (164)
Q Consensus 47 ~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~ 91 (164)
..++..||+|.+|.-+.=+++-.--+.. ....++||.++|+.
T Consensus 241 ~~~v~e~dg~LvlGsSL~v~Sg~r~i~~---a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 241 MEKVKECDGFLVLGSSLMVLSGFRFIRH---AHEKKKPIAIVNIG 282 (305)
T ss_pred HHHHhccCceEEechhHHHHHHHHHHHH---HHhhcCcEEEEecC
Confidence 3467889999999766655544433322 12347999999985
No 168
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=27.30 E-value=2.7e+02 Score=25.54 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHH-HHHHHHHHHHcCCC
Q 031213 3 LVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLE-ELLEVITWAQLGIH 81 (164)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLd-El~e~~t~~qlg~~ 81 (164)
.+|+-++..|.+|+.+=+......+.....+ .+.++. .+++.||.||..+|.-+.++ |.++.+
T Consensus 268 ~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~le----ell~~ADIVI~atGt~~iI~~e~~~~M-------- 331 (476)
T PTZ00075 268 GCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLE----DVVETADIFVTATGNKDIITLEHMRRM-------- 331 (476)
T ss_pred HHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHH----HHHhcCCEEEECCCcccccCHHHHhcc--------
Confidence 4566667778887776222111000001111 112332 35788999999998878775 666554
Q ss_pred CccEEEEecCcc
Q 031213 82 DKPVGLINVDGY 93 (164)
Q Consensus 82 ~kPivlln~~gf 93 (164)
++-.+++|..-+
T Consensus 332 KpGAiLINvGr~ 343 (476)
T PTZ00075 332 KNNAIVGNIGHF 343 (476)
T ss_pred CCCcEEEEcCCC
Confidence 445778888544
No 169
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.29 E-value=1.2e+02 Score=25.82 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=24.1
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 52 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
.+| +|+.-||=||+-+.+..+ ...++|++-+|.
T Consensus 62 ~~d-~vi~~GGDGt~l~~~~~~-----~~~~~Pvlgin~ 94 (295)
T PRK01231 62 VCD-LVIVVGGDGSLLGAARAL-----ARHNVPVLGINR 94 (295)
T ss_pred CCC-EEEEEeCcHHHHHHHHHh-----cCCCCCEEEEeC
Confidence 345 667779999999887554 235789988886
No 170
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=27.24 E-value=1.5e+02 Score=23.32 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=23.4
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
++....|++|+.|......++....+ ...+.|+|++|.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~-----~~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEA-----KAAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHH-----HHCCCCEEEEec
Confidence 44557999999886544334443322 224678888875
No 171
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=27.19 E-value=2.7e+02 Score=22.10 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHc-CCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcC
Q 031213 44 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 122 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~ql-g~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~ 122 (164)
++....++.+|.+|+++ -.++.. -++.+... ...+.|++++|.+.-.-+ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~~~-----------------~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTPLS-----------------PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCCCC-----------------CcCCEEEEC
Confidence 44555677899888864 333332 33333322 235789999997632111 233467777
Q ss_pred CHHHHHHHH
Q 031213 123 NAKELVQKL 131 (164)
Q Consensus 123 ~~ee~~~~l 131 (164)
+..|+++.|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 888888765
No 172
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=26.65 E-value=74 Score=25.44 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=35.5
Q ss_pred EEEccCCCcC-HHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCeEEc-CCHHHHHHHHH
Q 031213 56 FIALPGGYGT-LEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSILVSA-PNAKELVQKLE 132 (164)
Q Consensus 56 fIvlPGG~GT-LdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i~~~-~~~ee~~~~l~ 132 (164)
.|+|.||.|| +-.+. ...+||++=++ | .+++++ |+++...|+ .+.++++ ...+.+.+++.
T Consensus 3 avIlAaG~gtRl~plt--------~~~pK~llpi~--g--~pli~~~l~~l~~~gi-----~~v~iv~~~~~~~i~~~~~ 65 (260)
T TIGR01099 3 AVIPAAGLGTRFLPAT--------KAIPKEMLPIV--D--KPLIQYVVEEAVEAGI-----EDILIVTGRGKRAIEDHFD 65 (260)
T ss_pred EEEEcccCcccCCCcc--------cCCCceeEEEC--C--EEHHHHHHHHHHhCCC-----CEEEEEeCCcHHHHHHHhc
Confidence 5899999999 11111 12467776654 4 377776 467776654 2334333 44667777764
No 173
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=26.59 E-value=29 Score=22.34 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.5
Q ss_pred HHhCCeEEEccCCCcCH
Q 031213 50 ARNSDCFIALPGGYGTL 66 (164)
Q Consensus 50 ~~~sDafIvlPGG~GTL 66 (164)
+..||+++++|.|...+
T Consensus 45 l~~an~l~~ip~~~~~~ 61 (72)
T PF03454_consen 45 LARANGLIVIPEGVEGL 61 (72)
T ss_dssp HHHBSEEEEEETT-SEE
T ss_pred HhhCCEEEEeCCCCCcc
Confidence 66799999999997654
No 174
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=26.34 E-value=3.3e+02 Score=21.53 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCeEEEccC--CCcCHHHHHHHHHHHHcCCCCccEEEEecC
Q 031213 43 HQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVD 91 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPG--G~GTLdEl~e~~t~~qlg~~~kPivlln~~ 91 (164)
.+....++..||++|.... |.|+ =++|++.. .+|++..+..
T Consensus 269 ~~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~~------g~PvI~~~~~ 311 (374)
T cd03817 269 REELPDYYKAADLFVFASTTETQGL--VLLEAMAA------GLPVVAVDAP 311 (374)
T ss_pred hHHHHHHHHHcCEEEecccccCcCh--HHHHHHHc------CCcEEEeCCC
Confidence 3556677888998775432 3333 26677654 8999988764
No 175
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=26.09 E-value=2.5e+02 Score=21.82 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=24.9
Q ss_pred HHHHhCCeEEEcc--CCCcCHHHHHHHHHHHHcCCCCccEEEEecC
Q 031213 48 EMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVD 91 (164)
Q Consensus 48 ~m~~~sDafIvlP--GG~GTLdEl~e~~t~~qlg~~~kPivlln~~ 91 (164)
.++..||++|... .|+|+ =+.|+++. .+|++..+..
T Consensus 259 ~~~~~~d~~i~ps~~e~~~~--~~~Ea~~~------G~PvI~~~~~ 296 (353)
T cd03811 259 PYLKAADLFVLSSRYEGFPN--VLLEAMAL------GTPVVATDCP 296 (353)
T ss_pred HHHHhCCEEEeCcccCCCCc--HHHHHHHh------CCCEEEcCCC
Confidence 4678899877532 34555 36777765 8999987764
No 176
>PRK04155 chaperone protein HchA; Provisional
Probab=26.00 E-value=63 Score=27.40 Aligned_cols=35 Identities=26% Similarity=0.197 Sum_probs=22.5
Q ss_pred EEEccCCCcCHHHHHHHHHHHHc----CCCCccEEEEec
Q 031213 56 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLINV 90 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~ql----g~~~kPivlln~ 90 (164)
.|++|||.|.+..+.+--.+.++ ...+|||..+..
T Consensus 150 aV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICH 188 (287)
T PRK04155 150 AVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCH 188 (287)
T ss_pred EEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEECh
Confidence 78999999997765432222222 135788887765
No 177
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=25.69 E-value=1.9e+02 Score=24.11 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHH
Q 031213 6 HVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVI 73 (164)
Q Consensus 6 ~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~ 73 (164)
+-|.+.|..+|||=. ..+.++.+-.+-.+|..-++. .+.+++.-+|+.|.+++....
T Consensus 165 ~~a~~~ga~iiGINn----------RdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~d~~~l~ 221 (247)
T PRK13957 165 KLALDCGAEIIGINT----------RDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRSDLDKFR 221 (247)
T ss_pred HHHHhCCCCEEEEeC----------CCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHHHH
Confidence 457788999999911 123333322233455544554 577888899999999998754
No 178
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=25.48 E-value=2.2e+02 Score=24.65 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=11.3
Q ss_pred HHHHhcCCEEEEEeC
Q 031213 6 HVVHRGGGHVLGIIP 20 (164)
Q Consensus 6 ~ga~~~GG~viGIiP 20 (164)
-++.+-||+++.+=+
T Consensus 65 ~A~~~LGg~~i~l~~ 79 (336)
T PRK03515 65 VAAYDQGARVTYLGP 79 (336)
T ss_pred HHHHHcCCcEEEeCC
Confidence 467778999999733
No 179
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=25.30 E-value=1.2e+02 Score=23.40 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=20.4
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
+..|++|++||- |.-++.-....+.+.-..++|+.=+.
T Consensus 42 ~~~d~iIi~gGp-~~~~~~~~~~~~i~~~~~~~PiLGIC 79 (190)
T PRK06895 42 ENFSHILISPGP-DVPRAYPQLFAMLERYHQHKSILGVC 79 (190)
T ss_pred ccCCEEEECCCC-CChHHhhHHHHHHHHhcCCCCEEEEc
Confidence 457988888765 53333333333332212478987444
No 180
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.20 E-value=1.8e+02 Score=24.55 Aligned_cols=52 Identities=31% Similarity=0.349 Sum_probs=32.7
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC--ccc-----hHHHHHHHHHHHcCC
Q 031213 52 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYY-----NSLLNFIDKAVDDGF 109 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~--gfw-----~~l~~~l~~~~~egf 109 (164)
.+| +|+.-||=||+--.+..+ ..+++|++=+|.. ||. +.+.+.|+.+.+..|
T Consensus 64 ~~D-lvi~iGGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 64 ISD-FLISLGGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred CCC-EEEEECCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC
Confidence 456 555568999976554333 3457899888863 566 445566666655444
No 181
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=24.94 E-value=18 Score=30.43 Aligned_cols=65 Identities=18% Similarity=0.386 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHH-----hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHc-CCC
Q 031213 39 VADMHQRKAEMAR-----NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDD-GFI 110 (164)
Q Consensus 39 ~~~m~~Rk~~m~~-----~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~e-gfi 110 (164)
..+=.+|-.-+.+ ..||++++-||+|+. ++..-+.+..+..++|+++ | |+++..++..+..+ |.+
T Consensus 44 ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~-rlL~~ld~~~i~~~pK~~i-----G-ySDiTaL~~al~~~~g~~ 114 (284)
T PF02016_consen 44 AGSDEERAEDLNEAFADPEIDAIWCARGGYGAN-RLLPYLDYDAIRKNPKIFI-----G-YSDITALHNALYAKTGLV 114 (284)
T ss_dssp SS-HHHHHHHHHHHHHSTTEEEEEES--SS-GG-GGGGGCHHHHHHHSG-EEE-----E--GGGHHHHHHHHHHHTBE
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeeccccHH-HHHhcccccccccCCCEEE-----E-ecchHHHHHHHHHhCCCe
Confidence 3455666655443 357899999999994 5666666666666666554 2 45555554444444 443
No 182
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=24.90 E-value=2.9e+02 Score=24.17 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=32.5
Q ss_pred HHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHH----HHHHHHHHhCCeEEEccCC
Q 031213 4 VSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMH----QRKAEMARNSDCFIALPGG 62 (164)
Q Consensus 4 va~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~----~Rk~~m~~~sDafIvlPGG 62 (164)
+.++|++.|=+++.|......+.-......++.+++.++. +-...-...-+++|+..|.
T Consensus 32 I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~~~iiIp~gs 94 (358)
T PRK13278 32 ILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREMNAILIPHGS 94 (358)
T ss_pred HHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhcCcEEEeCCC
Confidence 6789999999999996554321111223335566555442 1111222333776666654
No 183
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=24.84 E-value=75 Score=25.56 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=32.5
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcC----------CCCccEEEEecCccchHHHHHHHHH
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLG----------IHDKPVGLINVDGYYNSLLNFIDKA 104 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg----------~~~kPivlln~~gfw~~l~~~l~~~ 104 (164)
+.+...|=+--|.-----++.++-++..+ +..+|+|==|. |||+.|++.=+++
T Consensus 93 ~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~-GFw~QLi~YE~qL 155 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV-GFWRQLIDYEQQL 155 (198)
T ss_pred cCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc-cHHHHHHHHHHHh
Confidence 33444666666666555555555444333 13579987765 8999998864444
No 184
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=24.46 E-value=2.8e+02 Score=20.16 Aligned_cols=10 Identities=50% Similarity=0.976 Sum_probs=3.4
Q ss_pred EEEccCCCcC
Q 031213 56 FIALPGGYGT 65 (164)
Q Consensus 56 fIvlPGG~GT 65 (164)
.|++-||.+.
T Consensus 40 ~il~SGg~~~ 49 (155)
T PF02698_consen 40 RILFSGGYGH 49 (155)
T ss_dssp -EEEE--SST
T ss_pred eEEECCCCCC
Confidence 4555555543
No 185
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.43 E-value=1.8e+02 Score=22.60 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 91 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~ 91 (164)
.+-+..|++|+.|-....+.++++-+.- ...|+++++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEecc
Confidence 3455689999999998877777777643 35799998765
No 186
>PHA01630 putative group 1 glycosyl transferase
Probab=24.24 E-value=1.7e+02 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCeEEE--ccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchH
Q 031213 43 HQRKAEMARNSDCFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 96 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIv--lPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~ 96 (164)
++....++..||+||. ...|+|.. +.|+++. .+|+|..+..| +..
T Consensus 200 ~~~l~~~y~~aDv~v~pS~~E~fgl~--~lEAMA~------G~PVIas~~gg-~~E 246 (331)
T PHA01630 200 DDDIYSLFAGCDILFYPVRGGAFEIP--VIEALAL------GLDVVVTEKGA-WSE 246 (331)
T ss_pred HHHHHHHHHhCCEEEECCccccCChH--HHHHHHc------CCCEEEeCCCC-chh
Confidence 4666678999999886 35677764 7888875 89999988754 443
No 187
>PTZ00378 hypothetical protein; Provisional
Probab=24.20 E-value=1.1e+02 Score=28.39 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccE-EEEe-cCccchHHHHHHHHHHHcCCCCcc
Q 031213 43 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPV-GLIN-VDGYYNSLLNFIDKAVDDGFISPS 113 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPi-vlln-~~gfw~~l~~~l~~~~~egfi~~~ 113 (164)
.-++.+-...+.++++=|.=+||+.|.+++..+.+-.- -+.| +++. ..| =|.+++-|.-....+||+..
T Consensus 387 ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g-~~~v~v~vShRSG-eD~~IAdLAVa~ga~~IKtG 457 (518)
T PTZ00378 387 KVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDE-GRAVTVLVQTLAG-NAATAAHLAVAMGARFLCSG 457 (518)
T ss_pred HHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcC-CcEEccccCCCcC-CccHHHHHHHHcCCCccccC
Confidence 34455555668999999999999999999998876532 2333 1121 234 45566655555566676543
No 188
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=24.19 E-value=1e+02 Score=27.31 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=54.7
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHHHHHc----CCCCccEEEEec--Cccch-H-HHHHHHHHHHcCC--CCccccCC-
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLINV--DGYYN-S-LLNFIDKAVDDGF--ISPSQRSI- 117 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t~~ql----g~~~kPivlln~--~gfw~-~-l~~~l~~~~~egf--i~~~~~~~- 117 (164)
+...+|++|+.|=..+|+.-+.-=++-.-+ -.+.+|++++-. ...|. + .++.+..+.+.|+ +++.....
T Consensus 75 l~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~a 154 (390)
T TIGR00521 75 LAKWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLA 154 (390)
T ss_pred cccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccc
Confidence 345789999999999998877532221110 112499998754 45785 3 4455677777773 34432111
Q ss_pred -----eEEcCCHHHHHHHHHhhcC
Q 031213 118 -----LVSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 118 -----i~~~~~~ee~~~~l~~~~~ 136 (164)
.--..+++++++++.+...
T Consensus 155 c~~~g~g~~~~~~~i~~~v~~~~~ 178 (390)
T TIGR00521 155 CGDEGKGRLAEPETIVKAAEREFS 178 (390)
T ss_pred cccccCCCCCCHHHHHHHHHHHHh
Confidence 1225678999999987653
No 189
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.19 E-value=1.8e+02 Score=22.86 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=22.9
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
+.....|++|+.|.....+.++...+. ...+|+|+++.
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEecC
Confidence 445568999998765444444433322 23678888774
No 190
>PRK10122 GalU regulator GalF; Provisional
Probab=23.94 E-value=88 Score=26.27 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=36.4
Q ss_pred EEEccCCCcC-HHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCe-EEcCCHHHHHHHHH
Q 031213 56 FIALPGGYGT-LEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSIL-VSAPNAKELVQKLE 132 (164)
Q Consensus 56 fIvlPGG~GT-LdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i-~~~~~~ee~~~~l~ 132 (164)
.|++.||.|| +-.+. ...+||++=+. | .+++++ ++++.+.|. .+.+ ......+.+.+++.
T Consensus 6 avIlAaG~GtRl~PlT--------~~~PK~llpi~--g--kpiI~~~l~~l~~~Gi-----~~i~iv~~~~~~~i~~~~~ 68 (297)
T PRK10122 6 AVIPVAGLGMHMLPAT--------KAIPKEMLPIV--D--KPMIQYIVDEIVAAGI-----KEIVLVTHASKNAVENHFD 68 (297)
T ss_pred EEEECCcCCcccCccc--------CCCCceeeEEC--C--EEHHHHHHHHHHHCCC-----CEEEEEcCCChHHHHHHHh
Confidence 5889999999 21111 12377777554 4 488886 477887764 2333 33445677777764
No 191
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.92 E-value=2.4e+02 Score=22.07 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=21.9
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
+.....|++|+.|+..-+ +++...+ ...++|+|+++.
T Consensus 51 l~~~~vdgii~~~~~~~~-~~~~~~~-----~~~~ipvV~i~~ 87 (269)
T cd06281 51 FEQRRMDGIIIAPGDERD-PELVDAL-----ASLDLPIVLLDR 87 (269)
T ss_pred HHHcCCCEEEEecCCCCc-HHHHHHH-----HhCCCCEEEEec
Confidence 344578999999864322 3333322 234678888864
No 192
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.85 E-value=4.3e+02 Score=22.01 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=33.2
Q ss_pred ecCCH-HHHHHHHHHhCCeEEEc---cCCCcCH----HHHHHHHHHHHcCCCCccEEE
Q 031213 38 PVADM-HQRKAEMARNSDCFIAL---PGGYGTL----EELLEVITWAQLGIHDKPVGL 87 (164)
Q Consensus 38 i~~~m-~~Rk~~m~~~sDafIvl---PGG~GTL----dEl~e~~t~~qlg~~~kPivl 87 (164)
+.++- .+|...+.+.|++||-+ +|=.|.- +++.+.....+- ..++|+++
T Consensus 151 v~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~v 207 (263)
T CHL00200 151 IAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MTNKPIIL 207 (263)
T ss_pred ECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hcCCCEEE
Confidence 34444 79999999999988776 7877762 445544443332 34789986
No 193
>PRK13669 hypothetical protein; Provisional
Probab=23.84 E-value=1.8e+02 Score=20.09 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=26.9
Q ss_pred HHHHcCCC-CccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHhhc
Q 031213 74 TWAQLGIH-DKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYV 135 (164)
Q Consensus 74 t~~qlg~~-~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (164)
.+.+-|.. .+|-.++|.+ ++.++|+||+++.|.++.
T Consensus 36 Cls~CG~C~~~~FAlVng~--------------------------~V~a~t~eeL~~kI~~~i 72 (78)
T PRK13669 36 CLGYCGICSEGLFALVNGE--------------------------VVEGETPEELVENIYAHL 72 (78)
T ss_pred hhhhCcCcccCceEEECCe--------------------------EeecCCHHHHHHHHHHHH
Confidence 35556663 6788888854 678899999999987653
No 194
>PF04559 Herpes_UL17: Herpesvirus UL17 protein; InterPro: IPR007640 U64 protein is required for DNA cleavage and packaging in herpes viruses. It has been shown to associate with immature B-type capsids [], and is required for the localisation of capsids and capsid proteins to the intranuclear sites where viral DNA is cleaved and packaged []. In the virion, U64 is a component of the tegument, which is a protein layer surrounding the viral capsid [].; GO: 0006323 DNA packaging, 0019012 virion
Probab=23.82 E-value=35 Score=31.47 Aligned_cols=11 Identities=36% Similarity=1.198 Sum_probs=9.7
Q ss_pred CeEEEccCCCc
Q 031213 54 DCFIALPGGYG 64 (164)
Q Consensus 54 DafIvlPGG~G 64 (164)
++++|||||++
T Consensus 523 ~a~lVLPGGFa 533 (540)
T PF04559_consen 523 NAWLVLPGGFA 533 (540)
T ss_pred eEEEEecCcEE
Confidence 67999999985
No 195
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=23.68 E-value=3.6e+02 Score=21.07 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=23.6
Q ss_pred HHHHHHHHh--CCeEEEccCCCcCHHHHHHHHHH
Q 031213 44 QRKAEMARN--SDCFIALPGGYGTLEELLEVITW 75 (164)
Q Consensus 44 ~Rk~~m~~~--sDafIvlPGG~GTLdEl~e~~t~ 75 (164)
+....+.+. .+.-|+.-||+.|.+.+.++..+
T Consensus 160 ~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 160 NTTERLAPLIPKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 333444444 67888999999999999988754
No 196
>PF13941 MutL: MutL protein
Probab=23.66 E-value=5.7e+02 Score=23.34 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=14.9
Q ss_pred hHHHHHHHhcCCEEEEEeCCCc
Q 031213 2 GLVSHVVHRGGGHVLGIIPKTL 23 (164)
Q Consensus 2 gava~ga~~~GG~viGIiP~~~ 23 (164)
+|+-++|+.+|++|+.++-..+
T Consensus 91 ~AAk~AAlgAGA~V~~v~s~~l 112 (457)
T PF13941_consen 91 EAAKRAALGAGARVLQVYSYEL 112 (457)
T ss_pred HHHHHHHhcCCcEEEEEeccCC
Confidence 3555677778888888855533
No 197
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=23.59 E-value=1e+02 Score=24.41 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=24.8
Q ss_pred CCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchH
Q 031213 53 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 96 (164)
Q Consensus 53 sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~ 96 (164)
.|++|++-=+.-+++++-.+.... ..+|+|++| +-|++
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~~----~~rpvvl~N--p~l~~ 135 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEAA----GGRPVVLLN--PQLED 135 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHhc----CCCeEEEEe--ccccc
Confidence 477655555555577777776542 238999999 45664
No 198
>PRK00208 thiG thiazole synthase; Reviewed
Probab=23.56 E-value=1.3e+02 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=11.9
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHH
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVIT 74 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t 74 (164)
+.+..+.-|+.-||+||.+...+++.
T Consensus 170 i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 170 IIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 33334444444455555554444443
No 199
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=23.56 E-value=92 Score=25.21 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.0
Q ss_pred EEEccCCCcCHHH
Q 031213 56 FIALPGGYGTLEE 68 (164)
Q Consensus 56 fIvlPGG~GTLdE 68 (164)
.|++|||.|..+-
T Consensus 85 alviPGG~~~~~~ 97 (213)
T cd03133 85 ALIFPGGFGAAKN 97 (213)
T ss_pred EEEECCCCchhhh
Confidence 6789999987543
No 200
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=23.52 E-value=2.6e+02 Score=19.93 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=34.0
Q ss_pred CCCCccEEEEecCccchHHHHHHHH-HHHcCCCCccccCCeEEcCCHHHHHHHHHhhc
Q 031213 79 GIHDKPVGLINVDGYYNSLLNFIDK-AVDDGFISPSQRSILVSAPNAKELVQKLEEYV 135 (164)
Q Consensus 79 g~~~kPivlln~~gfw~~l~~~l~~-~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (164)
+.+=+|++.++.+|-=+.+++.++. +-....|.-+-.. ..-++..|+.+.|++..
T Consensus 15 ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~~~ 70 (97)
T PRK10343 15 AHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVRET 70 (97)
T ss_pred cCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHHHH
Confidence 3456999999999999999999875 4443344322111 11233466666666543
No 201
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=23.43 E-value=97 Score=24.97 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHHHhCCeEEEccCCCcCHHHHHHHHH
Q 031213 45 RKAEMARNSDCFIALPGGYGTLEELLEVIT 74 (164)
Q Consensus 45 Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t 74 (164)
--..+.+.++.-|+..||++|++++.++..
T Consensus 175 li~~i~~~~~~pvia~GGi~s~ed~~~l~~ 204 (221)
T TIGR00734 175 LLTKTLELSEHPVMLGGGISGVEDLELLKE 204 (221)
T ss_pred HHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence 334456667788999999999999987543
No 202
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.25 E-value=3.8e+02 Score=22.61 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=34.0
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC-----------ccchHHHHHHHHHHHcC
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----------GYYNSLLNFIDKAVDDG 108 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~-----------gfw~~l~~~l~~~~~eg 108 (164)
..+.-...|++|++| ...-+...+.+.- ...|+|+++.. ..+.......+++++.|
T Consensus 108 ~~l~~~~vdGiIi~~--~~~~~~~~~~l~~-----~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G 174 (333)
T COG1609 108 ETLLQKRVDGLILLG--ERPNDSLLELLAA-----AGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELG 174 (333)
T ss_pred HHHHHcCCCEEEEec--CCCCHHHHHHHHh-----cCCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCC
Confidence 345566799999999 4444455544432 26788888752 12333444556777766
No 203
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=23.25 E-value=4.1e+02 Score=21.59 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=37.7
Q ss_pred CCEEEEEeCCCcccccccCCccceEeec--CCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 12 GGHVLGIIPKTLMNKEITGETVGEVKPV--ADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 12 GG~viGIiP~~~~~~e~~~~~~~el~i~--~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
-|.|.-+.|..... .......+++.. ..+.++-..+...+|++++ .||+|+-+.+.++.... ..+.+|+| ++
T Consensus 52 ~~~v~~~~~~~~~~--~i~~~~pe~~~~~~~~~~~~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~--~~~~~pvV-lD 125 (272)
T TIGR00196 52 AGLVTVAAPENVIT--LINSVSPELIVHRLGWKVDEDEELLERYDVVVI-GPGLGQDPSFKKAVEEV--LELDKPVV-LD 125 (272)
T ss_pred CCeEEEEEchhhHH--HHhhcCCEEEEecchhhHHHHHhhhccCCEEEE-cCCCCCCHHHHHHHHHH--HhcCCCEE-EE
Confidence 44555566653211 112223344432 2234444455677786666 66699966644444322 23577865 55
Q ss_pred cCc
Q 031213 90 VDG 92 (164)
Q Consensus 90 ~~g 92 (164)
.+|
T Consensus 126 a~g 128 (272)
T TIGR00196 126 ADA 128 (272)
T ss_pred hHH
Confidence 543
No 204
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=23.08 E-value=1.1e+02 Score=27.95 Aligned_cols=68 Identities=24% Similarity=0.226 Sum_probs=35.7
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCC-CCccEEEEe---cCccchHHHHHHHHHHHcC--CCC---ccccCCeEE--cCC
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLIN---VDGYYNSLLNFIDKAVDDG--FIS---PSQRSILVS--APN 123 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~-~~kPivlln---~~gfw~~l~~~l~~~~~eg--fi~---~~~~~~i~~--~~~ 123 (164)
++|+|.||.|| ++|. .+||++=++ ..-+.+-..+.+..+.... .-. ......+++ ..+
T Consensus 108 avViLAGG~GT-----------RLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t 176 (482)
T PTZ00339 108 AVLILAGGLGT-----------RLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN 176 (482)
T ss_pred EEEEECCCCcC-----------cCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch
Confidence 59999999999 3453 467666543 2235555555554432110 000 111222222 245
Q ss_pred HHHHHHHHHh
Q 031213 124 AKELVQKLEE 133 (164)
Q Consensus 124 ~ee~~~~l~~ 133 (164)
.+.+.+++++
T Consensus 177 ~~~t~~~f~~ 186 (482)
T PTZ00339 177 HDQTRQFLEE 186 (482)
T ss_pred HHHHHHHHHh
Confidence 6777788865
No 205
>PF01989 DUF126: Protein of unknown function DUF126; InterPro: IPR002840 These archaebacterial proteins have no known function.; PDB: 2HI6_A.
Probab=22.76 E-value=59 Score=22.59 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=18.0
Q ss_pred hCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEE
Q 031213 52 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGL 87 (164)
Q Consensus 52 ~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivl 87 (164)
.++-+++||+|-|.--=-.-.+.+.+.|..++=+++
T Consensus 27 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aPaAiI~ 62 (82)
T PF01989_consen 27 IAGKILVFPSGKGSTVGSYVLYELKKNGTAPAAIIF 62 (82)
T ss_dssp -TTSEEEES--S--SS-TTHHHHHHHHT-S-SEEEE
T ss_pred ccCeEEEecCCCCccHHHHHHHHHHHCCCCCeEEEE
Confidence 468899999999986644444555555555554443
No 206
>PF14953 DUF4504: Domain of unknown function (DUF4504)
Probab=22.56 E-value=1.7e+02 Score=24.55 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=37.8
Q ss_pred CccEEEEecCcc-chHHHHHHHHH-----HHcCCCCccccCCe-----EEcCCHHHHHHHHHhhc
Q 031213 82 DKPVGLINVDGY-YNSLLNFIDKA-----VDDGFISPSQRSIL-----VSAPNAKELVQKLEEYV 135 (164)
Q Consensus 82 ~kPivlln~~gf-w~~l~~~l~~~-----~~egfi~~~~~~~i-----~~~~~~ee~~~~l~~~~ 135 (164)
=||.++++..+. +..+.+++..+ .+.+++... ...+ .+.=+++.+.+++++-.
T Consensus 32 LRpa~L~Dy~~~~~~~lq~~L~~L~~~~~q~~~~~~~~-L~vl~I~~~~~lvn~~~~~~~le~~l 95 (270)
T PF14953_consen 32 LRPAVLYDYNGAGAPQLQEYLCSLLRLAQQESGLLFQN-LRVLVIDDNILLVNPKELLEHLESSL 95 (270)
T ss_pred CccEEEEEcCCCCHHHHHHHHHHhhhhhhcccchhccc-eEEEEEcCcEEEEeHHHHHHHHHHHh
Confidence 599999999998 99999998888 666655443 2222 33445788888887643
No 207
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=22.55 E-value=3.1e+02 Score=22.64 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCeEEEc--cCCCcCHHHHHHHHHHHHcCCCCccEEEEecCc
Q 031213 44 QRKAEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 92 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvl--PGG~GTLdEl~e~~t~~qlg~~~kPivlln~~g 92 (164)
+-...++..||+||.- ..|+|.. ++|+++. .+|++..+..|
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~--~lEA~a~------G~PvI~s~~~~ 314 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIV--NLEAMAC------GTPVVASATGG 314 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChH--HHHHHHc------CCCEEEeCCCC
Confidence 3345567888877653 2355553 4667654 89999887654
No 208
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=22.49 E-value=1.3e+02 Score=23.02 Aligned_cols=11 Identities=27% Similarity=0.214 Sum_probs=6.4
Q ss_pred HHHHHHHhhcC
Q 031213 126 ELVQKLEEYVP 136 (164)
Q Consensus 126 e~~~~l~~~~~ 136 (164)
+.++.+++..+
T Consensus 172 ~~~~~l~~~~~ 182 (199)
T PF13500_consen 172 ENLEALREKSG 182 (199)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 56666666544
No 209
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=22.38 E-value=52 Score=26.80 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=21.4
Q ss_pred EEEccCCCcCHHHHHHHHHHHHc----CCCCccEEEEec
Q 031213 56 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLINV 90 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~ql----g~~~kPivlln~ 90 (164)
.|++|||.|....+..--.+.++ ....|||..+..
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAICh 135 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCH 135 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECh
Confidence 67899999986654422211111 135789988765
No 210
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=22.30 E-value=1.8e+02 Score=22.67 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=22.4
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
+-...|++|+.|....-.+++.+.+. ..+.|+|+++.
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~~~~l~-----~~~iPvv~~~~ 89 (272)
T cd06301 53 IAQGVDAIIVVPVDTAATAPIVKAAN-----AAGIPLVYVNR 89 (272)
T ss_pred HHcCCCEEEEecCchhhhHHHHHHHH-----HCCCeEEEecC
Confidence 45578999998865433344443332 23568887763
No 211
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=22.28 E-value=63 Score=26.34 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=21.9
Q ss_pred EEEccCCCcCHHHHHHHHHHHHc----CCCCccEEEEec
Q 031213 56 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLINV 90 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~ql----g~~~kPivlln~ 90 (164)
.|++|||.|++..+..--.+.++ ....|||..+..
T Consensus 99 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICH 137 (232)
T cd03148 99 AVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCH 137 (232)
T ss_pred EEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECc
Confidence 67899999998754332222222 235788887764
No 212
>PRK00861 putative lipid kinase; Reviewed
Probab=22.27 E-value=1.9e+02 Score=23.87 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
.|+.-||=||+.|+...+.- +..|+.++-
T Consensus 60 ~vv~~GGDGTl~evv~~l~~-----~~~~lgviP 88 (300)
T PRK00861 60 LIIASGGDGTLSAVAGALIG-----TDIPLGIIP 88 (300)
T ss_pred EEEEECChHHHHHHHHHHhc-----CCCcEEEEc
Confidence 56679999999999977631 245776653
No 213
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=22.13 E-value=74 Score=25.56 Aligned_cols=47 Identities=28% Similarity=0.271 Sum_probs=26.3
Q ss_pred EEEccCCCcCHHHHHHHHHHHHcCCCCcc--EEEEecCccchHHHHHHHHHHHcCC
Q 031213 56 FIALPGGYGTLEELLEVITWAQLGIHDKP--VGLINVDGYYNSLLNFIDKAVDDGF 109 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~qlg~~~kP--ivlln~~gfw~~l~~~l~~~~~egf 109 (164)
.|++.|| |+++|+++++.. . =|| -++.|.- -=+.+...++.+.+.|+
T Consensus 105 aiFIGGg-~~i~~ile~~~~-~----l~~ggrlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAWE-R----LKPGGRLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred EEEECCC-CCHHHHHHHHHH-H----cCcCCeEEEEee-cHHHHHHHHHHHHHcCC
Confidence 4556666 999999998754 1 134 4555542 11223333445555555
No 214
>PRK07283 hypothetical protein; Provisional
Probab=21.95 E-value=2.7e+02 Score=19.45 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=43.2
Q ss_pred HHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHH--H--HHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCc
Q 031213 8 VHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKA--E--MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDK 83 (164)
Q Consensus 8 a~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~--~--m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~k 83 (164)
|.++|--+.|- +.. ..........-++++.|-+++-. + ..+....=++-. +|-+|+-.++ |. +.
T Consensus 13 A~raGklv~G~--~~v-~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~---~t~~eLG~a~-----Gk-~~ 80 (98)
T PRK07283 13 AQRAGRIISGE--ELV-VKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTV---FSTLELSAAV-----GK-PR 80 (98)
T ss_pred HHHhCCeeEcH--HHH-HHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe---CCHHHHHHHh-----CC-Cc
Confidence 56678888885 111 11112334445667888754333 2 333444433333 4889999776 33 22
Q ss_pred cEEEEecCccchHHHH
Q 031213 84 PVGLINVDGYYNSLLN 99 (164)
Q Consensus 84 Pivlln~~gfw~~l~~ 99 (164)
.++-+...||.+.+++
T Consensus 81 ~vvai~d~g~a~~l~~ 96 (98)
T PRK07283 81 KVLAVTDAGFSKKMRS 96 (98)
T ss_pred eEEEEeChhHHHHHHH
Confidence 3444445578887665
No 215
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=21.90 E-value=2.5e+02 Score=21.67 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=22.3
Q ss_pred hCCeEEEc---cCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 52 NSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 52 ~sDafIvl---PGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
.++++++. || |++++..+++... ..++||++..-
T Consensus 29 ~~~~vvl~InSpG--G~v~~~~~i~~~l--~~~~kPvia~v 65 (187)
T cd07020 29 GADALIIELDTPG--GLLDSTREIVQAI--LASPVPVVVYV 65 (187)
T ss_pred CCCEEEEEEECCC--CCHHHHHHHHHHH--HhCCCCEEEEE
Confidence 35776666 78 4777777766432 24689999653
No 216
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=21.88 E-value=98 Score=26.04 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=33.7
Q ss_pred EEEccCCCcC-HHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCeEEc--CCHHHHHHHH
Q 031213 56 FIALPGGYGT-LEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSILVSA--PNAKELVQKL 131 (164)
Q Consensus 56 fIvlPGG~GT-LdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i~~~--~~~ee~~~~l 131 (164)
.|+|.||.|| |-.+. ...+||++=+. | .|++++ |+++...|. .+.++++ .+.+.+.+++
T Consensus 6 aIILAgG~GtRL~PlT--------~~~pK~Llpv~--g--kPmI~~~l~~l~~aGi-----~~I~ii~~~~~~~~~~~~l 68 (292)
T PRK15480 6 GIILAGGSGTRLYPVT--------MAVSKQLLPIY--D--KPMIYYPLSTLMLAGI-----RDILIISTPQDTPRFQQLL 68 (292)
T ss_pred EEEECCCcccccCccc--------CCCCceEeEEC--C--EEHHHHHHHHHHHCCC-----CEEEEEecCCchHHHHHHH
Confidence 6899999999 11111 12477877554 3 377776 466766653 3343333 2345455555
Q ss_pred H
Q 031213 132 E 132 (164)
Q Consensus 132 ~ 132 (164)
.
T Consensus 69 ~ 69 (292)
T PRK15480 69 G 69 (292)
T ss_pred c
Confidence 4
No 217
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.87 E-value=3.4e+02 Score=24.84 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHh--CCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHH
Q 031213 39 VADMHQRKAEMARN--SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLL 98 (164)
Q Consensus 39 ~~~m~~Rk~~m~~~--sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~ 98 (164)
+++-..-|.+..+. -.-+|+..||=||+.|+.-=+ .+-....-|+.++- +-|+++.
T Consensus 100 td~~gqak~l~e~~~t~~Dii~VaGGDGT~~eVVTGi--~Rrr~~~~pv~~~P--~G~~~l~ 157 (535)
T KOG4435|consen 100 TDNQGQAKALAEAVDTQEDIIYVAGGDGTIGEVVTGI--FRRRKAQLPVGFYP--GGYDNLW 157 (535)
T ss_pred cCcHHHHHHHHHHhccCCCeEEEecCCCcHHHhhHHH--HhcccccCceeecc--CccchHh
Confidence 44444555443332 223677789999999987433 22223346888774 4456543
No 218
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=21.83 E-value=97 Score=24.85 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=34.5
Q ss_pred EEccCC--CcC-HHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHH-cCCCCccccCCeEEcC-CHHHHHHH
Q 031213 57 IALPGG--YGT-LEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVD-DGFISPSQRSILVSAP-NAKELVQK 130 (164)
Q Consensus 57 IvlPGG--~GT-LdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~-egfi~~~~~~~i~~~~-~~ee~~~~ 130 (164)
|+|.|| .|| |-.+. ...+||++=+. | .+++++ |+++.. .|. .+.++++. ..+.+.++
T Consensus 2 iIla~G~~~GtRl~plt--------~~~PK~llpv~--g--~plI~~~l~~l~~~~gi-----~~i~iv~~~~~~~i~~~ 64 (257)
T cd06428 2 VILVGGPQKGTRFRPLS--------LDVPKPLFPVA--G--KPMIHHHIEACAKVPDL-----KEVLLIGFYPESVFSDF 64 (257)
T ss_pred EEEccCCCCCcccCCcc--------CCCCcccCeEC--C--eeHHHHHHHHHHhcCCC-----cEEEEEecCCHHHHHHH
Confidence 677788 898 11111 12366666553 4 377776 466766 343 33444444 56777777
Q ss_pred HHhh
Q 031213 131 LEEY 134 (164)
Q Consensus 131 l~~~ 134 (164)
+.+.
T Consensus 65 l~~~ 68 (257)
T cd06428 65 ISDA 68 (257)
T ss_pred HHhc
Confidence 7653
No 219
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.78 E-value=1.8e+02 Score=25.81 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHH----cCCCCccEEEEec--CccchH--HHHHHHHHHHcCC--CCccccCC
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQ----LGIHDKPVGLINV--DGYYNS--LLNFIDKAVDDGF--ISPSQRSI 117 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~q----lg~~~kPivlln~--~gfw~~--l~~~l~~~~~egf--i~~~~~~~ 117 (164)
.+.+.+|++|+.|=..+|+.-+..=++-.- +-..++|++++-. ...|.. .++.++.+.+.|+ +++....+
T Consensus 78 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~l 157 (399)
T PRK05579 78 ELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRL 157 (399)
T ss_pred hcccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccc
Confidence 345579999999999999988764322111 1123799998751 235553 3345677777773 34422111
Q ss_pred e------EEcCCHHHHHHHHHhhcC
Q 031213 118 L------VSAPNAKELVQKLEEYVP 136 (164)
Q Consensus 118 i------~~~~~~ee~~~~l~~~~~ 136 (164)
- ==-.+++++++.+.+...
T Consensus 158 a~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 158 ACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 1 114578999999987653
No 220
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=21.58 E-value=1.4e+02 Score=25.04 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=24.5
Q ss_pred eEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC--ccchH
Q 031213 55 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYYNS 96 (164)
Q Consensus 55 afIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~--gfw~~ 96 (164)
-+|+.-||=||+-...... ....+|++-+|.. ||+.+
T Consensus 57 d~ivvlGGDGtlL~~~~~~-----~~~~~pilgin~G~lGFLt~ 95 (281)
T COG0061 57 DLIVVLGGDGTLLRAARLL-----ARLDIPVLGINLGHLGFLTD 95 (281)
T ss_pred eEEEEeCCcHHHHHHHHHh-----ccCCCCEEEEeCCCcccccc
Confidence 3666678889976655333 3456899988864 56554
No 221
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=21.52 E-value=2.1e+02 Score=25.94 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=33.3
Q ss_pred HHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHH
Q 031213 6 HVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEV 72 (164)
Q Consensus 6 ~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~ 72 (164)
+-|++.|..+|||= + ..+.++.+-.+-..|..-++. .+.+++.=+|+.|.+++..+
T Consensus 173 ~~al~~~a~iiGiN-n---------RdL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~~~ 228 (454)
T PRK09427 173 ERAIALGAKVIGIN-N---------RNLRDLSIDLNRTRELAPLIP-ADVIVISESGIYTHAQVREL 228 (454)
T ss_pred HHHHhCCCCEEEEe-C---------CCCccceECHHHHHHHHhhCC-CCcEEEEeCCCCCHHHHHHH
Confidence 45788899999991 1 122223322233444444443 46677777888888887664
No 222
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=21.49 E-value=2.1e+02 Score=19.52 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=44.6
Q ss_pred CCCcCHHHHHHHHHHHHcCCCC--ccEEEEecCc--cchHHHHHH-HHHHHcCCCCccccCCeEEcCCHHHHH
Q 031213 61 GGYGTLEELLEVITWAQLGIHD--KPVGLINVDG--YYNSLLNFI-DKAVDDGFISPSQRSILVSAPNAKELV 128 (164)
Q Consensus 61 GG~GTLdEl~e~~t~~qlg~~~--kPivlln~~g--fw~~l~~~l-~~~~~egfi~~~~~~~i~~~~~~ee~~ 128 (164)
||-.|-.|+.+.+.- ..+... .-.-+-+..+ -|+..+.|- ..+...|+|.......+.+++.-.+++
T Consensus 17 g~~~~~~ei~~~v~~-~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~~rG~~~iT~~G~~~l 88 (92)
T PF14338_consen 17 GGSASRKEIYERVAE-RFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERPKRGIWRITEKGRKAL 88 (92)
T ss_pred CCCcCHHHHHHHHHH-HhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCCCCCceEECHhHHHHH
Confidence 888899999888753 233221 1111114444 488888885 579999999888888888887766554
No 223
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.37 E-value=4.6e+02 Score=21.42 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=22.4
Q ss_pred CCeEEEccCCCcCHHHHHHHHHHHHcCCCCc-cEEEEec
Q 031213 53 SDCFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLINV 90 (164)
Q Consensus 53 sDafIvlPGG~GTLdEl~e~~t~~qlg~~~k-Pivlln~ 90 (164)
.| +|+.-||=||+.|+...+.- ...+ |+.+++.
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~~----~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALIQ----LDDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHhc----CCCCCcEEEEcC
Confidence 45 56678999999999977631 1233 6766654
No 224
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.35 E-value=2.9e+02 Score=21.85 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=33.4
Q ss_pred CCccEEEEecCccchH--HHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHhh
Q 031213 81 HDKPVGLINVDGYYNS--LLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 134 (164)
Q Consensus 81 ~~kPivlln~~gfw~~--l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (164)
.+.|+++.+..+-.+. .++.++.+.+.|.-.---...+.-.+||.++++.+.+.
T Consensus 178 ~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~ 233 (235)
T cd00958 178 CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAV 233 (235)
T ss_pred CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHH
Confidence 3689877664333332 45556666777654444455566777888888877653
No 225
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=21.35 E-value=99 Score=25.84 Aligned_cols=60 Identities=25% Similarity=0.348 Sum_probs=33.7
Q ss_pred EEEccCCCcC-HHHHHHHHHHHHcCCCCccEEEEecCccchHHHHH-HHHHHHcCCCCccccCCeEEc--CCHHHHHHHH
Q 031213 56 FIALPGGYGT-LEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSILVSA--PNAKELVQKL 131 (164)
Q Consensus 56 fIvlPGG~GT-LdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~-l~~~~~egfi~~~~~~~i~~~--~~~ee~~~~l 131 (164)
.|+|.||.|| |-.+. ...+||++=++ | .|++++ |+++...|. .+.++++ .+.+.+.+++
T Consensus 2 aIILAgG~GtRL~plT--------~~~pK~Llpv~--g--kPmI~~~L~~l~~aGi-----~~I~iv~~~~~~~~~~~~l 64 (286)
T TIGR01207 2 GIILAGGSGTRLYPIT--------RAVSKQLLPIY--D--KPMIYYPLSTLMLAGI-----RDILIISTPQDTPRFQQLL 64 (286)
T ss_pred EEEECCCCCccCCccc--------CCCCceeeEEC--C--EEhHHHHHHHHHHCCC-----CEEEEEecCCcHHHHHHHh
Confidence 4889999999 11111 12367776554 3 477776 467777663 3343333 3445555555
Q ss_pred H
Q 031213 132 E 132 (164)
Q Consensus 132 ~ 132 (164)
.
T Consensus 65 g 65 (286)
T TIGR01207 65 G 65 (286)
T ss_pred c
Confidence 3
No 226
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=21.29 E-value=1.5e+02 Score=24.69 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=23.8
Q ss_pred HHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 48 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 48 ~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
...+.+|.+| .-||=||+-..+. +.+.+.+|++=+|.
T Consensus 72 ~~~~~~D~ii-~lGGDGT~L~~~~-----~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 72 MLEEGVDLII-VLGGDGTFLRAAR-----LFGDYDIPILGINT 108 (285)
T ss_dssp HHCCCSSEEE-EEESHHHHHHHHH-----HCTTST-EEEEEES
T ss_pred hcccCCCEEE-EECCCHHHHHHHH-----HhccCCCcEEeecC
Confidence 3456677555 4588999765553 33446899998886
No 227
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.20 E-value=1.9e+02 Score=19.91 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=15.5
Q ss_pred eEEcCCHHHHHHHHHhhc
Q 031213 118 LVSAPNAKELVQKLEEYV 135 (164)
Q Consensus 118 i~~~~~~ee~~~~l~~~~ 135 (164)
++.++|+||+++.|.++.
T Consensus 55 ~V~A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 55 IVAAETAEELLEKIKEKI 72 (78)
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 688999999999998754
No 228
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=21.04 E-value=1e+02 Score=24.62 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCeEEEcc---CCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE
Q 031213 44 QRKAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120 (164)
Q Consensus 44 ~Rk~~m~~~sDafIvlP---GG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~ 120 (164)
+....++..||+++ +| .|+|. =++|++.. .+|+|..+..++-+ +. .+...++.
T Consensus 264 ~~~~~~~~~~d~~l-~ps~~e~~~~--~~~Ea~a~------G~pvI~~~~~~~~e-~~--------------~~~~~~~~ 319 (365)
T cd03809 264 EELAALYRGARAFV-FPSLYEGFGL--PVLEAMAC------GTPVIASNISSLPE-VA--------------GDAALYFD 319 (365)
T ss_pred hHHHHHHhhhhhhc-ccchhccCCC--CHHHHhcC------CCcEEecCCCCccc-ee--------------cCceeeeC
Confidence 44556678888655 44 23332 25666654 89999876643221 11 11233556
Q ss_pred cCCHHHHHHHHHhhc
Q 031213 121 APNAKELVQKLEEYV 135 (164)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (164)
.+|++++.+.|.+..
T Consensus 320 ~~~~~~~~~~i~~l~ 334 (365)
T cd03809 320 PLDPEALAAAIERLL 334 (365)
T ss_pred CCCHHHHHHHHHHHh
Confidence 678999988887753
No 229
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=20.99 E-value=3.7e+02 Score=23.35 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=39.0
Q ss_pred HHHHHhC----CeEEEccC---CCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeE
Q 031213 47 AEMARNS----DCFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 119 (164)
Q Consensus 47 ~~m~~~s----DafIvlPG---G~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~ 119 (164)
..++..| |+| ++|- |+|.. +.|+++. .+|+|..+..| ...+ +.+ .....++
T Consensus 331 ~~~~~~a~~~~Dv~-v~pS~~E~fg~~--~lEAma~------G~PvV~s~~gg-~~ei-------v~~-----~~~G~lv 388 (439)
T TIGR02472 331 PELYRLAARSRGIF-VNPALTEPFGLT--LLEAAAC------GLPIVATDDGG-PRDI-------IAN-----CRNGLLV 388 (439)
T ss_pred HHHHHHHhhcCCEE-ecccccCCcccH--HHHHHHh------CCCEEEeCCCC-cHHH-------hcC-----CCcEEEe
Confidence 3445555 555 5553 66653 7777765 89999988754 2222 211 1222344
Q ss_pred EcCCHHHHHHHHHhhc
Q 031213 120 SAPNAKELVQKLEEYV 135 (164)
Q Consensus 120 ~~~~~ee~~~~l~~~~ 135 (164)
-..|++++.+.|.+..
T Consensus 389 ~~~d~~~la~~i~~ll 404 (439)
T TIGR02472 389 DVLDLEAIASALEDAL 404 (439)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4678888888887654
No 230
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.99 E-value=1.2e+02 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 46 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 46 k~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
.+++++++|.=|++--|+||.+...+++.| .---||+|.
T Consensus 174 l~iiie~a~VPviVDAGiG~pSdAa~aMEl------G~DaVL~NT 212 (262)
T COG2022 174 LEIIIEEADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 212 (262)
T ss_pred HHHHHHhCCCCEEEeCCCCChhHHHHHHhc------ccceeehhh
Confidence 457888889988889999999999988877 455566664
No 231
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=20.89 E-value=5.2e+02 Score=21.90 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=48.1
Q ss_pred HHHHhcCCEEEEEeCCCcc-cc-ccc------CCccceEeecCCH-HHHHHHHHHhCCeEEEccCCCc--CHHHHHHHHH
Q 031213 6 HVVHRGGGHVLGIIPKTLM-NK-EIT------GETVGEVKPVADM-HQRKAEMARNSDCFIALPGGYG--TLEELLEVIT 74 (164)
Q Consensus 6 ~ga~~~GG~viGIiP~~~~-~~-e~~------~~~~~el~i~~~m-~~Rk~~m~~~sDafIvlPGG~G--TLdEl~e~~t 74 (164)
.++.+-||+++.+-|.... .+ |.. -..+.|.++.... +.--..+.+.|+.=|+=.|+-+ =.+-+..++|
T Consensus 63 ~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~T 142 (304)
T PRK00779 63 VGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLT 142 (304)
T ss_pred HHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHH
Confidence 4678899999998443321 11 100 1223455554433 3444455566665443333311 1355666777
Q ss_pred HHH-cC-CCCccEEEEecCccchHHHHHHHHHH
Q 031213 75 WAQ-LG-IHDKPVGLINVDGYYNSLLNFIDKAV 105 (164)
Q Consensus 75 ~~q-lg-~~~kPivlln~~gfw~~l~~~l~~~~ 105 (164)
+.+ .| ..++.|.+++. ...-...++..+.
T Consensus 143 i~e~~g~l~gl~i~~vGd--~~~v~~Sl~~~l~ 173 (304)
T PRK00779 143 IYEHRGSLKGLKVAWVGD--GNNVANSLLLAAA 173 (304)
T ss_pred HHHHhCCcCCcEEEEEeC--CCccHHHHHHHHH
Confidence 653 34 34456666653 2334444444333
No 232
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.88 E-value=2.3e+02 Score=24.30 Aligned_cols=53 Identities=25% Similarity=0.451 Sum_probs=31.6
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecC--ccch-----HHHHHHHHHHHcCC
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYYN-----SLLNFIDKAVDDGF 109 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~--gfw~-----~l~~~l~~~~~egf 109 (164)
+.+| +|+.-||=||+-..+.. ...+.+|++=+|.. ||.. .+.+.|+.+.+..|
T Consensus 71 ~~~D-~vi~lGGDGT~L~aar~-----~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 71 DGCE-LVLVLGGDGTILRAAEL-----ARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY 130 (306)
T ss_pred cCCC-EEEEEcCCHHHHHHHHH-----hccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc
Confidence 4466 55556899997655433 23467899988863 4533 34445555555444
No 233
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=20.84 E-value=86 Score=22.86 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=31.9
Q ss_pred EEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHh
Q 031213 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEE 133 (164)
Q Consensus 56 fIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~ 133 (164)
.|+|-||.|+ ..|. +||.+-++..-..+..++ .+.+.+ ..+.++++.. +++.+.+.+
T Consensus 1 ~vILa~G~s~-----------Rmg~-~K~l~~i~g~~li~~~l~---~l~~~~-----~~~Ivvv~~~-~~~~~~~~~ 57 (160)
T PF12804_consen 1 AVILAAGKSS-----------RMGG-PKALLPIGGKPLIERVLE---ALREAG-----VDDIVVVTGE-EEIYEYLER 57 (160)
T ss_dssp EEEEESSSCG-----------GGTS-CGGGSEETTEEHHHHHHH---HHHHHT-----ESEEEEEEST-HHHHHHHTT
T ss_pred CEEECCcCcc-----------cCCC-CccceeECCccHHHHHHH---HhhccC-----CceEEEecCh-HHHHHHHhc
Confidence 4788899886 2233 899988865434443333 333332 1345555555 556555543
No 234
>PRK15494 era GTPase Era; Provisional
Probab=20.71 E-value=5.3e+02 Score=21.96 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=40.2
Q ss_pred HHhCCeEEEccCCCcCHHHHHHHHHHHHcCC-CCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEE----cCCH
Q 031213 50 ARNSDCFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS----APNA 124 (164)
Q Consensus 50 ~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~-~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~----~~~~ 124 (164)
++.||++|++--..-++++.-.-+ +..+.. ...|++++|.-.-.+.....+.....+... ....+.+ -...
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 457999776654444444443211 222222 235666777643332222222222222210 1122222 2358
Q ss_pred HHHHHHHHhhcCCC
Q 031213 125 KELVQKLEEYVPLH 138 (164)
Q Consensus 125 ee~~~~l~~~~~~~ 138 (164)
+++++.|.+..+..
T Consensus 205 ~eL~~~L~~~l~~~ 218 (339)
T PRK15494 205 DGLLEYITSKAKIS 218 (339)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999998865544
No 235
>PRK11096 ansB L-asparaginase II; Provisional
Probab=20.69 E-value=1.4e+02 Score=26.05 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=28.2
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEe
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 89 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln 89 (164)
+..|+|||. -|.=||+|....+++. ++ .+||||+.+
T Consensus 99 ~~~dGiVVt-HGTDTme~tA~~Ls~~-~~-~~kPVVlTG 134 (347)
T PRK11096 99 DKTDGFVIT-HGTDTMEETAYFLDLT-VK-CDKPVVLVG 134 (347)
T ss_pred CCCCEEEEe-CCCchHHHHHHHHHHh-cc-CCCCEEEeC
Confidence 346777776 5689999999999874 33 489999987
No 236
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=20.56 E-value=1.6e+02 Score=26.14 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=27.7
Q ss_pred HhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 51 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 51 ~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
+..|+||++-| .=||+|....+++.--. -||||+.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~~t--~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTINT--LKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHHhc--CCcEEEecc
Confidence 34889999874 78999998888764322 299998864
No 237
>PLN02327 CTP synthase
Probab=20.47 E-value=75 Score=29.74 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEE
Q 031213 49 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGL 87 (164)
Q Consensus 49 m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivl 87 (164)
.+...|++ ++|||+|+-.--..+........+++|+.=
T Consensus 359 ~L~~~DGI-vvpGGfG~~~~~G~i~ai~~are~~iP~LG 396 (557)
T PLN02327 359 LLKGADGI-LVPGGFGDRGVEGKILAAKYARENKVPYLG 396 (557)
T ss_pred hhccCCEE-EeCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 36777866 889999775443333332222345778763
No 238
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=20.10 E-value=2.2e+02 Score=22.23 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=21.8
Q ss_pred HHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEec
Q 031213 50 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 90 (164)
Q Consensus 50 ~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~ 90 (164)
....|++|+.|.-....++....+. ..+.|+|+++.
T Consensus 54 ~~~vdgiii~~~~~~~~~~~~~~~~-----~~~ipvV~~~~ 89 (270)
T cd06308 54 RQGVDLLIISPNEAAPLTPVVEEAY-----RAGIPVILLDR 89 (270)
T ss_pred HhCCCEEEEecCchhhchHHHHHHH-----HCCCCEEEeCC
Confidence 4468999998754433344433322 24678888874
No 239
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=20.05 E-value=4e+02 Score=20.81 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=32.4
Q ss_pred hHHHHHHHhcCCEEEEE-eCCCcccccccCCccce-E-eecC-CHHHHHHHHHHhCCeEEE-ccCCCcCHHH
Q 031213 2 GLVSHVVHRGGGHVLGI-IPKTLMNKEITGETVGE-V-KPVA-DMHQRKAEMARNSDCFIA-LPGGYGTLEE 68 (164)
Q Consensus 2 gava~ga~~~GG~viGI-iP~~~~~~e~~~~~~~e-l-~i~~-~m~~Rk~~m~~~sDafIv-lPGG~GTLdE 68 (164)
+++++++.+.|..+.=| +|+...........+.. . ...+ |..+.-.-.+..||++|+ -|==+|++.-
T Consensus 21 ~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 21 EAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred HHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 57888899898766444 23322111111111111 0 2222 444444455778999765 3444444433
No 240
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.02 E-value=2.3e+02 Score=20.72 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCCCCccEEEEecCc
Q 031213 43 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 92 (164)
Q Consensus 43 ~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~~~kPivlln~~g 92 (164)
.+....+.+.||.+|..+..-|.-.=++|++.. .+|++..+..+
T Consensus 172 ~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~------g~pvi~s~~~~ 215 (229)
T cd01635 172 EELLALLLAAADVFVLPSLREGFGLVVLEAMAC------GLPVIATDVGG 215 (229)
T ss_pred HHHHHHHhhcCCEEEecccccCcChHHHHHHhC------CCCEEEcCCCC
Confidence 566677777899988766532333356677654 89999877643
Done!