Citrus Sinensis ID: 031214

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccEEEEcccccEEEEcccccccccccEEEEEEEccccEEccccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHccccccccccccccccccHccHHHHHHHHHHHcccccccccccEcccccccccEEEEEcccEEEEEEcccccccccEEEEEEEEccccccccccccEEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MWRRICSSQLKAQALALAQYScrsapvnpsiasrslisrplfasrhfsadsgtsvkkrvedvnpvatgheREELEAElegknileidyptgpfgtkdapaVVKSYydkrivgcpggegedehDVVWFWLekgkphecpvcsqyfvlevvgpggppdghgdddhh
Flexible Loop (DISEMBL)
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRhfsadsgtsvkkrvedvnpvatghereeleaelegknILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPggppdghgdddhh
Low Complexity Region (SEG)
MWRRICSSqlkaqalalaqYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHereeleaeleGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVgpggppdghgdddhh
Disordered region (IsUnstruct)
***********AQALALAQYSC**********************************************************KNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVG**************
Disordered Region (DISOPRED)
*************************************************************VNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVG**************
Disordered Region (DISEMBL)
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH
Disordered Region (DISPRO)
*WRRICSSQLKAQALAL****************************************RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPG************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9SSB8	171	Cytochrome c oxidase subu	yes	no	0.908	0.871	0.630	3e-48
Q9LW15	176	Cytochrome c oxidase subu	no	no	1.0	0.931	0.668	4e-43
Q9SSS5	90	Putative cytochrome c oxi	no	no	0.518	0.944	0.663	9e-29
P00428	129	Cytochrome c oxidase subu	yes	no	0.695	0.883	0.370	1e-11
P10606	129	Cytochrome c oxidase subu	yes	no	0.676	0.860	0.381	1e-11
Q710D6	128	Cytochrome c oxidase subu	N/A	no	0.701	0.898	0.358	5e-11
Q5REG2	129	Cytochrome c oxidase subu	yes	no	0.481	0.612	0.432	1e-10
Q5S3G4	129	Cytochrome c oxidase subu	yes	no	0.481	0.612	0.419	1e-10
P19536	128	Cytochrome c oxidase subu	yes	no	0.481	0.617	0.419	8e-10
P12075	129	Cytochrome c oxidase subu	yes	no	0.481	0.612	0.407	3e-09

>sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana GN=COX5B-2 PE=2 SV=1

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/157 (63%), Positives = 117/157 (74%), Gaps = 8/157 (5%)

Query: 1   MWRRICSSQLKAQAL--ALAQYSCRSAPVNPSIASRSLISRPL------FASRHFSADSG 52
           MWRRI SS LK+ +   + A  SCR A V  +  S S  +  +      F+    SA + 
Sbjct: 1   MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60

Query: 53  TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 112
           T+VKKRVEDV P+ATGHE+EEL+AELEG+ + +ID+P GPFGTK+APAVVKSYYD RIVG
Sbjct: 61  TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120

Query: 113 CPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVV 149
           CPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF LEVV
Sbjct: 121 CPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVV 157

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW15|CX5B1_ARATH Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana GN=COX5B-1 PE=2 SV=1

 Score =  173 bits (439), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/175 (66%), Positives = 133/175 (76%), Gaps = 11/175 (6%)

Query: 1   MWRRICSSQLKAQALALAQYSCR------SAPVNPSIAS-RSLISRPLFA-SRHFSADS- 51
           MWRRI SSQLK  A  +   S R      + PV   +A+ RS IS   F   R FS+DS 
Sbjct: 1   MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60

Query: 52  GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
            T   K+VEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APA+VKSYYDKRIV
Sbjct: 61  ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query: 112 GCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHG--DDDHH 164
           GCPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF LEVVGPGGPPDGHG  DD+HH
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEHH 175

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSS5|CX5BL_ARATH Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana GN=At1g52710 PE=2 SV=2

 Score =  125 bits (315), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 72/92 (78%), Gaps = 7/92 (7%)

Query: 74  LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGK 133
           L+ E  G+ +L+ID+P  PFGTK++PAVV+SY+DKR +GC GGEGED HDVVWFWL+KGK
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 134 PHECPVCSQYFVLEVVGPGGPPDGHGDD-DHH 164
             ECPVCSQYF        GPPDGHGDD DHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHH 89

Arabidopsis thaliana (taxid: 3702)

>sp|P00428|COX5B_BOVIN Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus GN=COX5B PE=1 SV=2

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 31  IASRSLISRPLFASRHFSAD--SGTSVKKRVEDVNPV------ATGHEREELEAELEGKN 82
           +ASR L      AS+   A   +G SV + +     V      ATG ERE + A  +G++
Sbjct: 1   MASRLLRGVGALASQALRARGPNGVSVVRSMASGGGVPTDEEQATGLEREVMLAARKGQD 60

Query: 83  ILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQ 142
              I  P    GTK+ P +V S  +KRIVGC     ED   V+WFWL KG+   CP C  
Sbjct: 61  PYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGT 118

Query: 143 YFVL 146
           ++ L
Sbjct: 119 HYKL 122

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Bos taurus (taxid: 9913)

>sp|P10606|COX5B_HUMAN Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens GN=COX5B PE=1 SV=2

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 7/118 (5%)

Query: 30  SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
           ++A+++L +R P  A+   S  SG  V    E     ATG ERE + A  +G +   +  
Sbjct: 11  TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66

Query: 89  PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL 146
           P G  GT++ P +V S  +KRIVGC     ED   VVWFWL KG+   CP C  ++ L
Sbjct: 67  PKGASGTREDPNLVPSISNKRIVGCIC--EEDNTSVVWFWLHKGEAQRCPRCGAHYKL 122

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Homo sapiens (taxid: 9606)

>sp|Q710D6|COX5B_VULVU Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes GN=COX5B PE=1 SV=1

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 30  SIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYP 89
           ++  R L  +   AS   S       K  V   +  ATG ERE + A  +G +   I  P
Sbjct: 7   ALEVRELKMQTPTASCVLSTQRANFAKGGVPTDDEQATGLEREVMMAARKGLDPYNILAP 66

Query: 90  TGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL 146
               GTK+ P +V S  +KRIVGC     ED   V+WFWL KG+   CP C  ++ L
Sbjct: 67  KAAAGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGTHYKL 121

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Vulpes vulpes (taxid: 9627)

>sp|Q5REG2|COX5B_PONAB Cytochrome c oxidase subunit 5B, mitochondrial OS=Pongo abelii GN=COX5B PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G +   +  P G  GT++ P +V S  +KRIVGC     ED   VV
Sbjct: 44  ATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGCIC--EEDNTSVV 101

Query: 126 WFWLEKGKPHECPVCSQYFVL 146
           WFWL KG+   CP C  ++ L
Sbjct: 102 WFWLHKGEAQRCPRCGAHYKL 122

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pongo abelii (taxid: 9601)

>sp|Q5S3G4|COX5B_PIG Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa GN=COX5B PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G +   I  P    GTK+ P +V S  +KRIVGC     ED   V+
Sbjct: 44  ATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCIC--EEDNSTVI 101

Query: 126 WFWLEKGKPHECPVCSQYFVL 146
           WFW+ KG+   CP C  ++ L
Sbjct: 102 WFWVHKGETQRCPSCGTHYKL 122

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Sus scrofa (taxid: 9823)

>sp|P19536|COX5B_MOUSE Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus GN=Cox5b PE=1 SV=1

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G +   +  P    GTK+ P +V S  +KRIVGC   E  D   V+
Sbjct: 43  ATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEE--DNCTVI 100

Query: 126 WFWLEKGKPHECPVCSQYFVL 146
           WFWL KG+   CP C  ++ L
Sbjct: 101 WFWLHKGESQRCPNCGTHYKL 121

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Mus musculus (taxid: 10090)

>sp|P12075|COX5B_RAT Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus GN=Cox5b PE=1 SV=2

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A   G +   +  P    GTK+ P +V S  +KRIVGC     ED   V+
Sbjct: 44  ATGLEREIMIAAQRGLDPYNMLPPKAASGTKEDPNLVPSVSNKRIVGCIC--EEDNCTVI 101

Query: 126 WFWLEKGKPHECPVCSQYFVL 146
           WFWL +G+   CP C  ++ L
Sbjct: 102 WFWLHQGESQRCPNCGTHYKL 122

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
358248215	160	uncharacterized protein LOC100780886 [Gl	0.963	0.987	0.710	5e-58
388510728	156	unknown [Medicago truncatula]	0.939	0.987	0.684	2e-55
351721897	153	uncharacterized protein LOC100527520 [Gl	0.920	0.986	0.662	1e-54
449467060	174	PREDICTED: cytochrome c oxidase subunit	0.993	0.936	0.655	3e-53
363808204	152	uncharacterized protein LOC100801050 [Gl	0.914	0.986	0.662	3e-53
106879617	162	cytochrome c oxidase subunit 5b [Plantag	0.951	0.962	0.660	1e-52
357455121	150	Cytochrome c oxidase subunit 5B [Medicag	0.890	0.973	0.677	2e-51
113734311	150	cytochrome c oxidase subunit Vb [Pisum s	0.908	0.993	0.658	2e-51
113734313	150	cytochrome c oxidase subunit Vb [Pisum s	0.701	0.766	0.826	1e-50
388512435	153	unknown [Lotus japonicus]	0.841	0.901	0.697	2e-50

>gi|358248215|ref|NP_001240096.1| uncharacterized protein LOC100780886 [Glycine max] gi|255637280|gb|ACU18970.1| unknown [Glycine max]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 133/166 (80%), Gaps = 8/166 (4%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADS--GTSVKKR 58
           M RR+ SS LK     LA  +  S P + S A+R        +SR+FS  S   T++KK+
Sbjct: 1   MLRRLLSSHLKT----LAATASSSTPRSASAAARFAALS--RSSRYFSTQSEDATAIKKK 54

Query: 59  VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
           VEDV P+ATGHEREEL+AELEG+NILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 55  VEDVMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 114

Query: 119 EDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 164
           EDEHDVVWFWLEK KPHECPVC+QYFVLEVVGPGG PDGHGDDDHH
Sbjct: 115 EDEHDVVWFWLEKDKPHECPVCAQYFVLEVVGPGGSPDGHGDDDHH 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510728|gb|AFK43430.1| unknown [Medicago truncatula]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/165 (68%), Positives = 132/165 (80%), Gaps = 11/165 (6%)

Query: 1   MWRRIC-SSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRV 59
           M RR+  SSQLK         + R +P   S  + SL+SR  F+++  S DS T +KK+V
Sbjct: 1   MLRRLLISSQLKT-------LTSRRSP--SSAVAVSLLSRHHFSTQS-SDDSTTGIKKKV 50

Query: 60  EDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGE 119
           EDV P+ATGHEREE++A+LEG++ILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEGE
Sbjct: 51  EDVVPIATGHEREEIQAQLEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGE 110

Query: 120 DEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 164
           DEHDVVWFWLEK KPHECPVC+QYFVLEVVGPGG P GHGD DHH
Sbjct: 111 DEHDVVWFWLEKDKPHECPVCAQYFVLEVVGPGGSPYGHGDPDHH 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721897|ref|NP_001237225.1| uncharacterized protein LOC100527520 [Glycine max] gi|255632532|gb|ACU16616.1| unknown [Glycine max]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 132/166 (79%), Gaps = 15/166 (9%)

Query: 1   MWRRI-CSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSG-TSVKKR 58
           MWRR+  SS LKA    L+       P  P +A+++L++R      HF+A SG +S+KKR
Sbjct: 1   MWRRLFSSSNLKALHTTLS-------PSRPRLAAQTLLAR------HFTAQSGASSLKKR 47

Query: 59  VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
           VEDV P+ATGHEREE++A+LEG++ILEI++P GPFGTK+APAVVKSY+D+RIVGCPG EG
Sbjct: 48  VEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEG 107

Query: 119 EDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 164
           E EHDVVWFWLEKGKP ECPVCSQYF LEVVGPGG P GHGD DHH
Sbjct: 108 EGEHDVVWFWLEKGKPIECPVCSQYFKLEVVGPGGDPYGHGDHDHH 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467060|ref|XP_004151243.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucumis sativus]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 136/174 (78%), Gaps = 11/174 (6%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVN-----PSIASRSLIS----RPLFASRHFSADS 51
           MWRR+ SS LK+     +  +  SAP+      P +A+ S +S     PLFA RH+++DS
Sbjct: 1   MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAPRLAAASHLSPSSTLPLFA-RHYASDS 59

Query: 52  G-TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRI 110
             T +KK VEDV P+ATGHEREELEA LEGK+IL+I++P GPFGTK+APAV+KSYYD+RI
Sbjct: 60  ADTGLKKTVEDVMPIATGHEREELEASLEGKDILDINHPIGPFGTKEAPAVIKSYYDERI 119

Query: 111 VGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 164
           VGCPGGE EDEHDV+WF L KG PHECPVCSQYFVLEVVGPGG PDG+GDDDHH
Sbjct: 120 VGCPGGEDEDEHDVIWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHH 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808204|ref|NP_001241975.1| uncharacterized protein LOC100801050 [Glycine max] gi|255633872|gb|ACU17297.1| unknown [Glycine max]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 131/166 (78%), Gaps = 16/166 (9%)

Query: 1   MWRRI-CSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSG-TSVKKR 58
           MWRR+  SS LK+   AL+       P  P +A+      PL  +RH +A SG +SVK+R
Sbjct: 1   MWRRLFSSSNLKSLHTALS-------PSRPRLAA------PLL-TRHVTAHSGASSVKRR 46

Query: 59  VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
           VEDV P+ATGH+REE++A+LEG++ILEI++P GPFGTK+APAVVKSY+D+RIVGCPG EG
Sbjct: 47  VEDVVPIATGHKREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEG 106

Query: 119 EDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 164
           EDEHDVVWFWLEKGKP ECPVCSQYF LEVVGPGG P GHGD DHH
Sbjct: 107 EDEHDVVWFWLEKGKPKECPVCSQYFKLEVVGPGGDPYGHGDHDHH 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|106879617|emb|CAJ38392.1| cytochrome c oxidase subunit 5b [Plantago major]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 128/165 (77%), Gaps = 9/165 (5%)

Query: 1   MWRRICSS-QLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRV 59
           MWRR+ ++  +  + LA    S RS   N + A+   + R  FA   F+ +SG +V KR 
Sbjct: 5   MWRRVAATANIHLRTLA----SVRSTLPNRTAAAPESL-RSSFAL--FNTESG-NVAKRP 56

Query: 60  EDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGE 119
           EDV P+ TGHEREEL+AEL+GK+ILEI+YP GPFGTK+ PAVVKSYYDKRIVGCPG +GE
Sbjct: 57  EDVIPIVTGHEREELQAELQGKDILEINYPEGPFGTKEEPAVVKSYYDKRIVGCPGADGE 116

Query: 120 DEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 164
           DEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGG PDGH +D HH
Sbjct: 117 DEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGSPDGHDEDSHH 161

Source: Plantago major

Species: Plantago major

Genus: Plantago

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455121|ref|XP_003597841.1| Cytochrome c oxidase subunit 5B [Medicago truncatula] gi|355486889|gb|AES68092.1| Cytochrome c oxidase subunit 5B [Medicago truncatula] gi|388495938|gb|AFK36035.1| unknown [Medicago truncatula]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/161 (67%), Positives = 123/161 (76%), Gaps = 15/161 (9%)

Query: 1   MWRRICSS-QLKAQALALAQYSCRSAPVNPSIASRSLISRPLFA--SRHFSADSGTSVKK 57
           MWRRI SS  LK  A      S  S P       RS ++   FA  SRH +  S  SVKK
Sbjct: 1   MWRRIVSSPHLKTLA-----SSSHSHP-------RSAVAGLRFAGLSRHVATQSAGSVKK 48

Query: 58  RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
            VEDV P+ATGHEREE++A+LEG+NILEID+P GPFGTK+APAVVKSYY++RIVGCPGGE
Sbjct: 49  TVEDVVPIATGHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYNRRIVGCPGGE 108

Query: 118 GEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGH 158
           GEDEHDVVWFWLE+GKPHECPVC+QYF LEVVGPGG P GH
Sbjct: 109 GEDEHDVVWFWLEEGKPHECPVCAQYFQLEVVGPGGDPYGH 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113734311|dbj|BAF30481.1| cytochrome c oxidase subunit Vb [Pisum sativum] gi|113734317|dbj|BAF30484.1| cytochrome c oxidase subunit Vb [Pisum sativum]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 119/158 (75%), Gaps = 9/158 (5%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
           MWRR+ +S       + +    RSA             R +  SRH +  S  SVKKRVE
Sbjct: 1   MWRRLFTSPHLKTLSSSSLSHPRSAVAG---------IRCVDLSRHVATQSAASVKKRVE 51

Query: 61  DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGED 120
           DV P+ATGHEREE++AELEG+NILEID+P GPFGTKDAPAVV+S+YD+RIVGCPGGEGED
Sbjct: 52  DVVPIATGHEREEIQAELEGRNILEIDHPEGPFGTKDAPAVVRSFYDRRIVGCPGGEGED 111

Query: 121 EHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGH 158
           EHDVVWFWLEKGKPHECPVC+QYF LEVVGPGG P GH
Sbjct: 112 EHDVVWFWLEKGKPHECPVCTQYFELEVVGPGGDPYGH 149

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113734313|dbj|BAF30482.1| cytochrome c oxidase subunit Vb [Pisum sativum] gi|113734319|dbj|BAF30485.1| cytochrome c oxidase subunit Vb [Pisum sativum]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 105/115 (91%)

Query: 44  SRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVK 103
           SRH +  S  SVKKRVEDV P+ATGHEREE++AELEG+NILEID+P GPFGTKDAPAVV+
Sbjct: 35  SRHVATQSAASVKKRVEDVVPIATGHEREEIQAELEGRNILEIDHPEGPFGTKDAPAVVR 94

Query: 104 SYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGH 158
           S+YD+RIVGCPGGEGEDEHDVVWFWLEKGKPHECPVC+QYF LEVVGPGG P GH
Sbjct: 95  SFYDRRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYFELEVVGPGGDPYGH 149

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512435|gb|AFK44279.1| unknown [Lotus japonicus]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 117/149 (78%), Gaps = 11/149 (7%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
           MWRR+ SS LK  A    Q     A +N S  S SL+       RHFS    TS+KK+VE
Sbjct: 1   MWRRLLSSHLKTLATCSPQSVSTVAALNCS--SVSLL-------RHFS--DTTSIKKKVE 49

Query: 61  DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGED 120
           DV P+ATGHEREEL+A LEG++ILEI++P GPFGTK+APAVVKSYYDKRIVGCPGGEGED
Sbjct: 50  DVMPIATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGED 109

Query: 121 EHDVVWFWLEKGKPHECPVCSQYFVLEVV 149
           EHDVVWFWLEKGKPHECPVC+QYFVLEVV
Sbjct: 110 EHDVVWFWLEKGKPHECPVCAQYFVLEVV 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2093267	176	AT3G15640 [Arabidopsis thalian	0.908	0.846	0.569	3.3e-40
TAIR|locus:2016284	171	AT1G80230 [Arabidopsis thalian	0.902	0.865	0.575	5.3e-40
UNIPROTKB|P92683	169	coxVb "Cytochrome c oxidase su	0.908	0.881	0.480	4.1e-33
TAIR|locus:2035069	90	AT1G52710 [Arabidopsis thalian	0.396	0.722	0.723	2.9e-25
UNIPROTKB|P10606	129	COX5B "Cytochrome c oxidase su	0.676	0.860	0.347	5.2e-10
UNIPROTKB|P00428	129	COX5B "Cytochrome c oxidase su	0.676	0.860	0.355	6.6e-10
UNIPROTKB|B7ZDP5	128	cox5b "Cytochrome c oxidase po	0.621	0.796	0.346	2.9e-09
UNIPROTKB|E2RHV9	129	COX5B "Uncharacterized protein	0.481	0.612	0.382	3.6e-09
DICTYBASE|DDB_G0269118	120	cxeA "cytochrome c oxidase sub	0.347	0.475	0.448	4.7e-09
UNIPROTKB|Q5S3G4	129	COX5B "Cytochrome c oxidase su	0.481	0.612	0.370	7.6e-09

TAIR|locus:2093267 AT3G15640 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 90/158 (56%), Positives = 102/158 (64%)

Query:     1 MWRRICSSXXXXXXXXXXXYSCR---SAPVNPS----IASRSLISRPLFA-SRHFSADS- 51
             MWRRI SS            S R   +A   P      A+RS IS   F   R FS+DS 
Sbjct:     1 MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60

Query:    52 GTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
              T   K+VEDV P+ATGH          G+ + +ID+P GPFGTK+APA+VKSYYDKRIV
Sbjct:    61 ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query:   112 GCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVV 149
             GCPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF LEVV
Sbjct:   121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVV 158

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2016284 AT1G80230 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 91/158 (57%), Positives = 106/158 (67%)

Query:     1 MWRRICSSXXXXXXXXXX--XYSCRSAPVNP---SIASRSLISRPLFAS---RHF-SADS 51
             MWRRI SS              SCR A V     S+++R+  S P ++S   R   SA +
Sbjct:     1 MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRAS-SIPAYSSIFSRLIGSAAA 59

Query:    52 GTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
              T+VKKRVEDV P+ATGH          G+ + +ID+P GPFGTK+APAVVKSYYD RIV
Sbjct:    60 DTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIV 119

Query:   112 GCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVV 149
             GCPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF LEVV
Sbjct:   120 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVV 157

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;ISS

UNIPROTKB|P92683 coxVb "Cytochrome c oxidase subunit Vb" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 73/152 (48%), Positives = 91/152 (59%)

Query:     1 MWRRICSSXXXXXXXXXXXYSCR-SAPVNPSIASRS--LISRPLFASRHFSADSGTSVKK 57
             MWRR+ +             S   S    P+  +R+  L +    A R  S         
Sbjct:     1 MWRRLQTLAPALRRAASASASAAASGAAGPASLARAAPLSTAAAAAFRRTSPLLSGDKPA 60

Query:    58 RVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
              VEDV P+ATG           G+   ++D P GPFGTK+APAV++SYY+KRIVGCPGGE
Sbjct:    61 TVEDVMPIATGLEREELAAELKGEKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGE 120

Query:   118 GEDEHDVVWFWLEKGKPHECPVCSQYFVLEVV 149
             GEDEHDVVWFWL+K +PHECPVCSQYFVL+V+
Sbjct:   121 GEDEHDVVWFWLKKDEPHECPVCSQYFVLKVI 152

GO:0005739 "mitochondrion" evidence=IC;ISS

TAIR|locus:2035069 AT1G52710 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 47/65 (72%), Positives = 57/65 (87%)

Query:    80 GKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPV 139
             G+ +L+ID+P  PFGTK++PAVV+SY+DKR +GC GGEGED HDVVWFWL+KGK  ECPV
Sbjct:    10 GRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGKSFECPV 69

Query:   140 CSQYF 144
             CSQYF
Sbjct:    70 CSQYF 74

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005740 "mitochondrial envelope" evidence=IEA

UNIPROTKB|P10606 COX5B "Cytochrome c oxidase subunit 5B, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 41/118 (34%), Positives = 57/118 (48%)

Query:    30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDY 88
             ++A+++L +R P  A+   S  SG  V    E     ATG           G +   +  
Sbjct:    11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66

Query:    89 PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL 146
             P G  GT++ P +V S  +KRIVGC   E  D   VVWFWL KG+   CP C  ++ L
Sbjct:    67 PKGASGTREDPNLVPSISNKRIVGCICEE--DNTSVVWFWLHKGEAQRCPRCGAHYKL 122

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P00428 COX5B "Cytochrome c oxidase subunit 5B, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 42/118 (35%), Positives = 56/118 (47%)

Query:    30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDY 88
             ++AS++L +R P   S   S  SG  V    E     ATG           G++   I  
Sbjct:    11 ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66

Query:    89 PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL 146
             P    GTK+ P +V S  +KRIVGC   E  D   V+WFWL KG+   CP C  ++ L
Sbjct:    67 PKATSGTKEDPNLVPSITNKRIVGCICEE--DNSTVIWFWLHKGEAQRCPSCGTHYKL 122

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|B7ZDP5 cox5b "Cytochrome c oxidase polypeptide Vb" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 36/104 (34%), Positives = 45/104 (43%)

Query:    43 ASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVV 102
             AS   S       K  V   +  ATG           G +   I  P    GTK+ P +V
Sbjct:    20 ASCVLSTQRANFAKGGVPTDDEQATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLV 79

Query:   103 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL 146
              S  +KRIVGC   E  D   V+WFWL KG+   CP C  ++ L
Sbjct:    80 PSITNKRIVGCICEE--DNSTVIWFWLHKGEAQRCPSCGTHYKL 121

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|E2RHV9 COX5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 31/81 (38%), Positives = 39/81 (48%)

Query:    66 ATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
             ATG           G +   I  P    GTK+ P +V S  +KRIVGC   E  D   V+
Sbjct:    44 ATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLVPSITNKRIVGCICEE--DNSTVI 101

Query:   126 WFWLEKGKPHECPVCSQYFVL 146
             WFWL KG+   CP C  ++ L
Sbjct:   102 WFWLHKGEAQRCPSCGTHYKL 122

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

DICTYBASE|DDB_G0269118 cxeA "cytochrome c oxidase subunit V" [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query:    90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLE 147
             TG FGT  +P +V+S +  RIV C GG+GE EHD+++  + + KP  C  C Q F L+
Sbjct:    53 TGAFGTLKSPVIVESIFHSRIVACEGGDGE-EHDILFHTVAEKKPTICLDCGQVFKLK 109

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5S3G4 COX5B "Cytochrome c oxidase subunit 5B, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/81 (37%), Positives = 39/81 (48%)

Query:    66 ATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
             ATG           G +   I  P    GTK+ P +V S  +KRIVGC   E  D   V+
Sbjct:    44 ATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCICEE--DNSTVI 101

Query:   126 WFWLEKGKPHECPVCSQYFVL 146
             WFW+ KG+   CP C  ++ L
Sbjct:   102 WFWVHKGETQRCPSCGTHYKL 122

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SSB8	CX5B2_ARATH	No assigned EC number	0.6305	0.9085	0.8713	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G80230	cytochrome c oxidase family protein; cytochrome c oxidase family protein; FUNCTIONS IN- cytochrome-c oxidase activity; LOCATED IN- mitochondrial envelope, mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Cytochrome c oxidase, subunit Vb (InterPro-IPR002124); BEST Arabidopsis thaliana protein match is- cytochrome c oxidase family protein (TAIR-AT3G15640.1); Has 341 Blast hits to 341 proteins in 124 species- Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 63; Plants - 54; Viruses - 0; Other Eukaryotes - 35 (source- NCBI BLink). (171 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	CI51	CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NAD [...] (486 aa)				•			•		0.922
	AT2G02050	NADH-ubiquinone oxidoreductase B18 subunit, putative; NADH-ubiquinone oxidoreductase B18 subuni [...] (103 aa)				•			•		0.875
	ATWHY2	ATWHY2 (A. THALIANA WHIRLY 2); DNA binding; Encodes a homolog of the potato p24 protein. It sha [...] (238 aa)				•			•		0.833
	COX6B	COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase; subunit 6b of cytochrome c oxidase (191 aa)				•		•	•		0.811
	AT1G71780	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (197 aa)				•					0.501
	AT2G17360	40S ribosomal protein S4 (RPS4A); 40S ribosomal protein S4 (RPS4A); FUNCTIONS IN- structural co [...] (261 aa)				•					0.465
	AT3G15640	cytochrome c oxidase family protein; cytochrome c oxidase family protein; FUNCTIONS IN- cytochr [...] (176 aa)				•		•		•	0.454
	AT5G07960	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular [...] (107 aa)				•					0.445
	ORF262	unknown protein; hypothetical protein (262 aa)							•		0.435
	COX3	unknown protein; Encodes cytochrome c oxidase subunit 3. ; Subunits I, II and III form the func [...] (265 aa)					•	•	•		0.424

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
PLN02294	174	PLN02294, PLN02294, cytochrome c oxidase subunit V	6e-96
cd00924	97	cd00924, Cyt_c_Oxidase_Vb, Cytochrome c oxidase su	5e-37
pfam01215	136	pfam01215, COX5B, Cytochrome c oxidase subunit Vb	3e-22
PTZ00043	268	PTZ00043, PTZ00043, cytochrome c oxidase subunit;	6e-11

>gnl|CDD|177931 PLN02294, PLN02294, cytochrome c oxidase subunit Vb

 Score =  274 bits (702), Expect = 6e-96
 Identities = 120/171 (70%), Positives = 134/171 (78%), Gaps = 7/171 (4%)

Query: 1   MWRRICSSQLKAQALALAQYSCR---SAPVNPSIASRSLISRPLFAS---RHFSADS-GT 53
           MWRRI SS LK  A ++   S R    A   P   SRS  S    +S   R+FS++S  T
Sbjct: 1   MWRRIVSSHLKTLAASVVAASPRRTVVATTRPLYLSRSRSSISASSSVFSRYFSSESADT 60

Query: 54  SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
           +VKKRVEDV P+ATGHEREELEAELEG+ +L+ID+P GPFGTK+APAVVKSYYDKRIVGC
Sbjct: 61  AVKKRVEDVMPIATGHEREELEAELEGRKLLDIDFPEGPFGTKEAPAVVKSYYDKRIVGC 120

Query: 114 PGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 164
           PGGEGEDEHDVVWFWLEKGK  ECPVC+QYF LEVVGPGGPPDGHGDDD H
Sbjct: 121 PGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDDDDH 171

Length = 174

>gnl|CDD|238464 cd00924, Cyt_c_Oxidase_Vb, Cytochrome c oxidase subunit Vb

 Score =  122 bits (309), Expect = 5e-37
 Identities = 48/98 (48%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 54  SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
           + +  V      ATG ER+EL A+LEG +  ++    GPFGTK+ P +V S +DKRIVGC
Sbjct: 1   AAEGEVPTDLEQATGLERKELLAKLEGIDDFDMKPLKGPFGTKEDPNLVPSAFDKRIVGC 60

Query: 114 PGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGP 151
                 D HDV+W WLEKGKP  CP C   F L  VGP
Sbjct: 61  IC--EPDSHDVIWMWLEKGKPKRCPECGHVFKLVDVGP 96

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly. Length = 97

>gnl|CDD|201667 pfam01215, COX5B, Cytochrome c oxidase subunit Vb

 Score = 86.2 bits (213), Expect = 3e-22
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG EREEL A L+G++  +I       GT   P +V+S  + RIVGC G      H ++
Sbjct: 45  ATGLEREELLAALKGRDPFDIKPLDASKGTLKDPIIVESIDNYRIVGCTGSPDG-SHTII 103

Query: 126 WFWLEKGKPHECPVCSQYFVLEVVGPGG 153
           WF + KG+   CP C   + L+ +G   
Sbjct: 104 WFTVHKGEAQRCPECGSVYKLKPIGSPN 131

Length = 136

>gnl|CDD|240240 PTZ00043, PTZ00043, cytochrome c oxidase subunit; Provisional

 Score = 58.7 bits (142), Expect = 6e-11
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 91  GPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL 146
           GPFGT + P +V S   +R+VGC GG GE EH  +WF   +G  + C  C Q F+L
Sbjct: 138 GPFGTIENPVLVPSVGTERVVGCTGGTGEHEHVPLWFRCREGFLYRCGECDQIFML 193

Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PLN02294	174	cytochrome c oxidase subunit Vb	100.0
PF01215	136	COX5B: Cytochrome c oxidase subunit Vb This family	100.0
KOG3352	153	consensus Cytochrome c oxidase, subunit Vb/COX4 [E	100.0
cd00924	97	Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb.	100.0
PTZ00043	268	cytochrome c oxidase subunit; Provisional	100.0
PF10276	40	zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Z	97.84
KOG3456	120	consensus NADH:ubiquinone oxidoreductase, NDUFS6/1	96.84
COG4391	62	Uncharacterized protein conserved in bacteria [Fun	95.37
COG4647	165	AcxC Acetone carboxylase, gamma subunit [Secondary	88.5
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	87.64
COG5189	423	SFP1 Putative transcriptional repressor regulating	86.35
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	82.62
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	80.75
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	80.15
PHA00616	44	hypothetical protein	80.12

>PLN02294 cytochrome c oxidase subunit Vb

Probab=100.00  E-value=5.2e-68  Score=430.24  Aligned_cols=162  Identities=73%  Similarity=1.226  Sum_probs=140.5

Q ss_pred             ChhhHHhhhhHHHHHHHhhhcCCCCCCCcc-----ccccccccc-cccccccccCCc-CCccccccCCCCcccchHHHHH
Q 031214            1 MWRRICSSQLKAQALALAQYSCRSAPVNPS-----IASRSLISR-PLFASRHFSADS-GTSVKKRVEDVNPVATGHEREE   73 (164)
Q Consensus         1 m~rr~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~vpd~~eqATGlER~E   73 (164)
                      ||||+++|+|||||++.++.+.++++++.+     ..+++.+++ +++|+|+|++++ ++.|+++|+|+|||||||||+|
T Consensus         1 MwRr~~ss~L~~la~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~ATGLER~E   80 (174)
T PLN02294          1 MWRRIVSSHLKTLAASVVAASPRRTVVATTRPLYLSRSRSSISASSSVFSRYFSSESADTAVKKRVEDVMPIATGHEREE   80 (174)
T ss_pred             ChhhHHHHHHHHHHHhhcccCcccccccccccccccccccccCchhhhhhhccccccccccccccCCCchhhccchHHHH
Confidence            999999999999998764432333332211     123444444 479999998877 7788999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecCCceecCCCCceEEEEEeCCCC
Q 031214           74 LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGG  153 (164)
Q Consensus        74 Lla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp~RCpeCG~~FkL~~vg~~~  153 (164)
                      |||+++|+|||||+++++++|||||||||||++++|||||+|+.++|+|+|+||||++|+|+||||||+||||++|||++
T Consensus        81 Lla~leG~D~Fd~~~~~gp~GTke~P~lVpS~~d~RiVGCtg~~~eDsh~v~Wf~L~kGkp~RCpeCG~~fkL~~vG~~~  160 (174)
T PLN02294         81 LEAELEGRKLLDIDFPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGG  160 (174)
T ss_pred             HHHHHcCCCccccccccCCCCCccCCcEeccCCCceEEeeCCCCCCCCceeEEEEecCCCceeCCCCCCEEEEEEeCCCC
Confidence            99999999999999999999999999999999999999999965689999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 031214          154 PPDGHGDDD  162 (164)
Q Consensus       154 ~p~~~~~~~  162 (164)
                      |||+|+|++
T Consensus       161 ~~~~h~d~~  169 (174)
T PLN02294        161 PPDGHGDDD  169 (174)
T ss_pred             CCCCCCCcc
Confidence            999998763

>PF01215 COX5B: Cytochrome c oxidase subunit Vb This family consists of chains F and S ; InterPro: IPR002124 Cytochrome c oxidase (1

Probab=100.00  E-value=7.2e-49  Score=308.57  Aligned_cols=102  Identities=50%  Similarity=0.920  Sum_probs=71.9

Q ss_pred             CccccccCCCCcccchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecC
Q 031214           53 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKG  132 (164)
Q Consensus        53 ~~~~~~vpd~~eqATGlER~ELla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kG  132 (164)
                      ....+.|||++||||||||+|||++++|+|||+|+++++++||+||||||||++++|||||+|+| +|+|+|+||||++|
T Consensus        32 ~a~~G~vptd~eqATGlER~Ella~~~G~D~Fd~~~~~~~~GT~e~P~lVpS~~~~RiVGC~g~~-~~sH~v~W~~l~~g  110 (136)
T PF01215_consen   32 GAKPGTVPTDLEQATGLEREELLAKLEGIDPFDMKPLKAPFGTKEDPILVPSYFDERIVGCTGEP-DDSHDVIWFWLHKG  110 (136)
T ss_dssp             -----BS--HHHH--HHHHHHHHHHHTT--TT--S--B----SSSS-CEEEESSSCEEEEESSST-T-SSS-EEEEEETT
T ss_pred             cccCCCCCChhHhhhHHHHHHHHHHhcCcCcccccCccCCCCCccCCeEccCCCCceEEeeccCC-CCcceeEEEEEeCC
Confidence            34578999999999999999999999999999999999999999999999999999999999997 67899999999999


Q ss_pred             CceecCCCCceEEEEEeCCCCCC
Q 031214          133 KPHECPVCSQYFVLEVVGPGGPP  155 (164)
Q Consensus       133 kp~RCpeCG~~FkL~~vg~~~~p  155 (164)
                      +|+|||+||+||||++||++++.
T Consensus       111 ~~~RCpeCG~~fkL~~vg~~~~~  133 (136)
T PF01215_consen  111 KPQRCPECGQVFKLKYVGPEGDH  133 (136)
T ss_dssp             SEEEETTTEEEEEEEE-------
T ss_pred             CccCCCCCCeEEEEEEcCCCCCC
Confidence            99999999999999999986433

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits, which is known as Vb in mammals, V in Dictyostelium discoideum (Slime mold) and IV in yeast, binds a zinc atom. The sequence of subunit Vb is well conserved and includes three conserved cysteines that coordinate the zinc ion [, ]. Two of these cysteines are clustered in the C-terminal section of the subunit.; GO: 0004129 cytochrome-c oxidase activity, 0005740 mitochondrial envelope; PDB: 2EIL_S 2ZXW_S 3ASN_S 1OCO_S 3AG4_S 3ABK_S 1OCZ_S 1OCC_F 3ASO_S 3ABL_S ....

>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]

Probab=100.00  E-value=3.6e-48  Score=309.14  Aligned_cols=101  Identities=52%  Similarity=0.928  Sum_probs=95.9

Q ss_pred             CCccccccCCCCcccchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeec
Q 031214           52 GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEK  131 (164)
Q Consensus        52 ~~~~~~~vpd~~eqATGlER~ELla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~k  131 (164)
                      .++..|.|||++||||||||+|||++++|+|||||+.+++++|||++||||||+||+|||||.|  ++|+|+|+||||+|
T Consensus        53 ~~~~~g~vpddle~aTGlEk~eLla~l~G~d~~d~k~~~~~~GTkedP~lV~S~~d~RiVGC~c--~eD~~~V~Wmwl~K  130 (153)
T KOG3352|consen   53 PMAKGGGVPDDLEQATGLEKEELLAELEGRDPFDMKVPRGPSGTKEDPNLVPSYYDKRIVGCGC--EEDSHAVVWMWLEK  130 (153)
T ss_pred             ccccCCCCCCchhhhhhHHHHHHHHHhhCCCccccccccCCCCcccCCccccccCCceEEeecc--cCCCcceEEEEEEc
Confidence            4556899999999999999999999999999999999999999999999999999999999977  57999999999999


Q ss_pred             CCceecCCCCceEEEEEeCCCCC
Q 031214          132 GKPHECPVCSQYFVLEVVGPGGP  154 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL~~vg~~~~  154 (164)
                      |+++|||||||||||+.+||+++
T Consensus       131 ge~~rc~eCG~~fkL~~v~~~~~  153 (153)
T KOG3352|consen  131 GETQRCPECGHYFKLVPVGPVNP  153 (153)
T ss_pred             CCcccCCcccceEEeeecCCCCC
Confidence            99999999999999999999653

>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb

Probab=100.00  E-value=1.6e-47  Score=285.99  Aligned_cols=95  Identities=51%  Similarity=0.890  Sum_probs=91.5

Q ss_pred             cccccCCCCcccchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecCCc
Q 031214           55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKP  134 (164)
Q Consensus        55 ~~~~vpd~~eqATGlER~ELla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp  134 (164)
                      ..|+|||++||||||||+||+++++|+|+|+|+++++++||++|||||||++++|||||+|+|  |+|+|+||||++|+|
T Consensus         2 ~~g~vp~d~e~aTGlEr~ELl~~~~G~d~f~~~~~~~~~GT~e~P~lVpS~~~~RiVGC~g~~--~~h~v~W~~l~~g~~   79 (97)
T cd00924           2 AEGEVPTDLEQATGLERKELLAKLEGIDDFDMKPLKGPFGTKEDPNLVPSAFDKRIVGCICEP--DSHDVIWMWLEKGKP   79 (97)
T ss_pred             CCcccCCchHhhhccHHHHHHHHHcCCccccccccccCCCCccCCeEecCCCCCeEEeeeCCC--CCceEEEEEEeCCCc
Confidence            357899999999999999999999999999999999999999999999999999999999976  699999999999999


Q ss_pred             eecCCCCceEEEEEeCC
Q 031214          135 HECPVCSQYFVLEVVGP  151 (164)
Q Consensus       135 ~RCpeCG~~FkL~~vg~  151 (164)
                      +||++||+||||+++++
T Consensus        80 ~rC~eCG~~fkL~~v~~   96 (97)
T cd00924          80 KRCPECGHVFKLVDVGP   96 (97)
T ss_pred             eeCCCCCcEEEEEECCC
Confidence            99999999999999986

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.

>PTZ00043 cytochrome c oxidase subunit; Provisional

Probab=100.00  E-value=3e-34  Score=243.18  Aligned_cols=97  Identities=34%  Similarity=0.554  Sum_probs=91.6

Q ss_pred             ccchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecCCceecCCCCceE
Q 031214           65 VATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF  144 (164)
Q Consensus        65 qATGlER~ELla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp~RCpeCG~~F  144 (164)
                      |....+.+.|+|.++|.+.+.++++.+|+||+|+|+||||++++|||||+|+++||+|+|+|||+++|+++|||+||+||
T Consensus       112 qi~~~~~~hm~~~le~y~~Lk~~~~~GPfGTkEdPiLVpSy~deRyVGCTGg~~EDeH~VvWFwLrEGkpqRCpECGqVF  191 (268)
T PTZ00043        112 QIVNEPSEHMLGLLELYEYLKSSSFVGPFGTIENPVLVPSVGTERVVGCTGGTGEHEHVPLWFRCREGFLYRCGECDQIF  191 (268)
T ss_pred             eecCCchHHHHHHHHHHHhcCcCCCCCCCCCccCCeEeccCCCceEEeccCCCccCCceeEEEEecCCCCccCCCCCcEE
Confidence            34447889999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEEE----eCCCCCCCCCCCC
Q 031214          145 VLEV----VGPGGPPDGHGDD  161 (164)
Q Consensus       145 kL~~----vg~~~~p~~~~~~  161 (164)
                      ||++    +++|+||++.|-+
T Consensus       192 KLVr~~~s~~dg~dp~~~dpd  212 (268)
T PTZ00043        192 MLVRVLYSLPDGEDPFPNDPD  212 (268)
T ss_pred             EEEEEEeecCCCCCCCCCCCc
Confidence            9998    9999999998854

>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.84  E-value=1.8e-05  Score=51.16  Aligned_cols=39  Identities=38%  Similarity=0.758  Sum_probs=33.1

Q ss_pred             CceEEeecCCCCCCCcceEEEEeec-CCceecCCCCceEE
Q 031214          107 DKRIVGCPGGEGEDEHDVVWFWLEK-GKPHECPVCSQYFV  145 (164)
Q Consensus       107 ~~RIVGC~g~p~eDsH~v~Wf~L~k-Gkp~RCpeCG~~Fk  145 (164)
                      +.|+|-|.|..++-.|-.+|+.|.+ +++..||.||.-|+
T Consensus         1 ~~~~v~CdG~~~~lgHPrVyl~l~~~~~~~~CpYCg~~yv   40 (40)
T PF10276_consen    1 DGRRVSCDGGGGALGHPRVYLNLDDEPGPVVCPYCGTRYV   40 (40)
T ss_dssp             -SSEEEEEESSTTSCCCCEEEE-TTTTCEEEETTTTEEEE
T ss_pred             CCcEEEeCCCCCCCCCCeEEEecCCCCCeEECCCCCCEEC
Confidence            4689999998777789999999999 48899999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.

>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]

Probab=96.84  E-value=0.0009  Score=52.21  Aligned_cols=44  Identities=36%  Similarity=0.601  Sum_probs=38.7

Q ss_pred             eccCCceEEeecCCCCCCCcceEEEEeecCCceecCCCCceEEE
Q 031214          103 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL  146 (164)
Q Consensus       103 pS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp~RCpeCG~~FkL  146 (164)
                      |+.-++|||-|-|+.++--|..+|+.|.|..++-|.+||.-|.-
T Consensus        73 p~e~d~RVV~CdGg~~aLGHPkvyInLDk~~~~~CgYCGlrf~~  116 (120)
T KOG3456|consen   73 PIEVDGRVVACDGGTPALGHPKVYINLDKPGPHICGYCGLRFVQ  116 (120)
T ss_pred             hhhccceEEEecCCCCCCCCCeEEEEcCCCCCcccccchhhhhh
Confidence            34459999999998878889999999999888999999998864

>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.37  E-value=0.032  Score=39.49  Aligned_cols=47  Identities=23%  Similarity=0.425  Sum_probs=35.9

Q ss_pred             CeeeeccCCceEEeecCCCCCCCcceEEEEeecCCceecCCCCceEEEE
Q 031214           99 PAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLE  147 (164)
Q Consensus        99 P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp~RCpeCG~~FkL~  147 (164)
                      ++.|....  --+-|.|...+-+|--+|+-+.+..-.-||.||..|+|.
T Consensus        15 ~~~I~~~~--~~l~C~g~~~p~~HPrV~L~mg~~gev~CPYC~t~y~l~   61 (62)
T COG4391          15 HETIEIGD--LPLMCPGPEPPNDHPRVFLDMGDEGEVVCPYCSTRYRLN   61 (62)
T ss_pred             ceEEEeCC--eeEEcCCCCCCCCCCEEEEEcCCCCcEecCccccEEEec
Confidence            45554432  236799987788899999999665567799999999985

>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.50  E-value=0.3  Score=39.73  Aligned_cols=45  Identities=29%  Similarity=0.637  Sum_probs=32.2

Q ss_pred             cCCceEEeecCCC-----------------------------CCCCcceEEEEeecCCceecCCCCceEEEEEeCCC
Q 031214          105 YYDKRIVGCPGGE-----------------------------GEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPG  152 (164)
Q Consensus       105 ~~~~RIVGC~g~p-----------------------------~eDsH~v~Wf~L~kGkp~RCpeCG~~FkL~~vg~~  152 (164)
                      ..++|++-|.|+-                             ..|-.+..||.+++   +-||+||.--..+-..|+
T Consensus        65 s~~~rv~rcecghsf~d~r~nwkl~a~i~vrdtee~lreiyp~s~ipdp~wme~re---ficpecg~l~eveaaap~  138 (165)
T COG4647          65 SAQKRVIRCECGHSFGDYRENWKLHANIYVRDTEEKLREIYPKSDIPDPQWMEIRE---FICPECGILHEVEAAAPG  138 (165)
T ss_pred             cccccEEEEeccccccChhhCceeeeEEEEcchHHHHHHhCcccCCCCchHHHHHH---hhCccccceeeeccCCCC
Confidence            4578899999952                             12345677887765   779999998777655554

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=87.64  E-value=0.32  Score=27.87  Aligned_cols=14  Identities=43%  Similarity=1.058  Sum_probs=12.0

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++|+..|.
T Consensus        12 ~k~~~C~~C~k~F~   25 (26)
T PF13465_consen   12 EKPYKCPYCGKSFS   25 (26)
T ss_dssp             SSSEEESSSSEEES
T ss_pred             CCCCCCCCCcCeeC
Confidence            36999999999884

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=86.35  E-value=0.33  Score=44.52  Aligned_cols=17  Identities=35%  Similarity=0.778  Sum_probs=15.7

Q ss_pred             eecCCceecCCCCceEE
Q 031214          129 LEKGKPHECPVCSQYFV  145 (164)
Q Consensus       129 L~kGkp~RCpeCG~~Fk  145 (164)
                      .-|+||+||++|+.-||
T Consensus       393 ~~~~KPYrCevC~KRYK  409 (423)
T COG5189         393 SAKDKPYRCEVCDKRYK  409 (423)
T ss_pred             cccCCceeccccchhhc
Confidence            66889999999999998

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=82.62  E-value=1.2  Score=27.01  Aligned_cols=14  Identities=21%  Similarity=0.479  Sum_probs=11.9

Q ss_pred             eecCCCCceEEEEE
Q 031214          135 HECPVCSQYFVLEV  148 (164)
Q Consensus       135 ~RCpeCG~~FkL~~  148 (164)
                      ++|++||+.|.+..
T Consensus         6 y~C~~Cg~~fe~~~   19 (41)
T smart00834        6 YRCEDCGHTFEVLQ   19 (41)
T ss_pred             EEcCCCCCEEEEEE
Confidence            68999999998764

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=80.75  E-value=0.91  Score=25.36  Aligned_cols=12  Identities=42%  Similarity=1.041  Sum_probs=10.6

Q ss_pred             ceecCCCCceEE
Q 031214          134 PHECPVCSQYFV  145 (164)
Q Consensus       134 p~RCpeCG~~Fk  145 (164)
                      |++|.+|++.|.
T Consensus         1 ~~~C~~C~~~F~   12 (27)
T PF13912_consen    1 PFECDECGKTFS   12 (27)
T ss_dssp             SEEETTTTEEES
T ss_pred             CCCCCccCCccC
Confidence            689999999994

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=80.15  E-value=1.2  Score=29.01  Aligned_cols=20  Identities=10%  Similarity=0.283  Sum_probs=14.6

Q ss_pred             EeecCCceecCCCCceEEEE
Q 031214          128 WLEKGKPHECPVCSQYFVLE  147 (164)
Q Consensus       128 ~L~kGkp~RCpeCG~~FkL~  147 (164)
                      .+..+.+.|||+||+--..+
T Consensus        13 ~~~~~~~irC~~CG~rIlyK   32 (44)
T smart00659       13 EIKSKDVVRCRECGYRILYK   32 (44)
T ss_pred             ecCCCCceECCCCCceEEEE
Confidence            35567899999999854433

present in RNA polymerase I, II and III

>PHA00616 hypothetical protein

Probab=80.12  E-value=0.39  Score=31.73  Aligned_cols=12  Identities=25%  Similarity=0.542  Sum_probs=10.6

Q ss_pred             ceecCCCCceEE
Q 031214          134 PHECPVCSQYFV  145 (164)
Q Consensus       134 p~RCpeCG~~Fk  145 (164)
                      |++|++||..|.
T Consensus         1 pYqC~~CG~~F~   12 (44)
T PHA00616          1 MYQCLRCGGIFR   12 (44)
T ss_pred             CCccchhhHHHh
Confidence            689999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2y69_F	129	Bovine Heart Cytochrome C Oxidase Re-Refined With M		8e-10
1occ_F	98	Structure Of Bovine Heart Cytochrome C Oxidase At T		5e-09

>pdb|2Y69|F Chain F, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 129

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 30  SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDY 88
           ++AS++L +R P   S   S  SG  V    E     ATG           G++   I  
Sbjct: 11  ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66
Query: 89  PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVL 146
           P    GTK+ P +V S  +KRIVGC   E  D   V+WFWL KG+   CP C  ++ L
Sbjct: 67  PKATSGTKEDPNLVPSITNKRIVGCICEE--DNSTVIWFWLHKGEAQRCPSCGTHYKL 122

>pdb|1OCC|F Chain F, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 98

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 66  ATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG           G++   I  P    GTK+ P +V S  +KRIVGC   E  D   V+
Sbjct: 13  ATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEE--DNSTVI 70
Query: 126 WFWLEKGKPHECPVCSQYFVL 146
           WFWL KG+   CP C  ++ L
Sbjct: 71  WFWLHKGEAQRCPSCGTHYKL 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2y69_F	129	Cytochrome C oxidase subunit 5B; electron transpor	2e-35
1v54_F	98	VI, cytochrome C oxidase polypeptide VB; oxidoredu	4e-33
2odx_A	80	Cytochrome C oxidase polypeptide IV; all beta-prot	1e-28
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	6e-05
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	5e-04

>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 129

 Score =  119 bits (298), Expect = 2e-35
 Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 43  ASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVV 102
                S     +    V      ATG ERE + A  +G++   I  P    GTK+ P +V
Sbjct: 21  GPNGVSVVRSMASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLV 80

Query: 103 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLE 147
            S  +KRIVGC     ED   V+WFWL KG+   CP C  ++ L 
Sbjct: 81  PSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGTHYKLV 123

>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ... Length = 98

 Score =  111 bits (280), Expect = 4e-33
 Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 54  SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
           +    V      ATG ERE + A  +G++   I  P    GTK+ P +V S  +KRIVGC
Sbjct: 1   ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGC 60

Query: 114 PGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLE 147
                ED   V+WFWL KG+   CP C  ++ L 
Sbjct: 61  IC--EEDNSTVIWFWLHKGEAQRCPSCGTHYKLV 92

>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae} Length = 80

 Score = 99.9 bits (249), Expect = 1e-28
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 93  FGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPG 152
            GT   P +++SY D R VGC G      H ++W      +   C  C   + L  VG  
Sbjct: 16  KGTMKDPIIIESYDDYRYVGCTGSP-AGSHTIMWLKPTVNEVARCWECGSVYKLNPVGVP 74

Query: 153 GPPDGH 158
                H
Sbjct: 75  NDDHHH 80

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} Length = 67

 Score = 38.5 bits (89), Expect = 6e-05
 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 95  TKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEK-GKPHECPVCSQYFVLEVVGPGG 153
           T  AP       DK  V C GGEG   H  VW  + +     ECP C   +VL+    G 
Sbjct: 2   TIQAPETK--IVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLK----GS 55

Query: 154 PPDGHGDDDHH 164
             D      HH
Sbjct: 56  KADALEHHHHH 66

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} Length = 80

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 3/78 (3%)

Query: 87  DYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL-EKGKPHECPVCSQYFV 145
                        A          V C GGEG   H  VW  +  +    EC  C + ++
Sbjct: 5   PKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYI 64

Query: 146 LEVVGPGGPPDGHGDDDH 163
            E          H    H
Sbjct: 65  HE--SFAAAKLEHHHHHH 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1v54_F	98	VI, cytochrome C oxidase polypeptide VB; oxidoredu	100.0
2y69_F	129	Cytochrome C oxidase subunit 5B; electron transpor	100.0
2odx_A	80	Cytochrome C oxidase polypeptide IV; all beta-prot	100.0
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	98.98
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	98.76
2jz8_A	87	Uncharacterized protein BH09830; zinc binding, str	97.17
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	93.49
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	92.51
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	92.07
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	90.99
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	91.66
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	91.62
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	91.46
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	91.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	90.85
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.66
1ard_A	29	Yeast transcription factor ADR1; transcription reg	90.6
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.5
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	90.23
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.17
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.98
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	89.93
1paa_A	30	Yeast transcription factor ADR1; transcription reg	89.93
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.87
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	89.02
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.34
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.19
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	88.95
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.15
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	87.94
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	87.75
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	87.88
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	87.74
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	87.55
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	87.07
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	86.95
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	86.73
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	86.61
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	85.85
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.81
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	85.6
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.35
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.29
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	85.28
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	85.25
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	85.01
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.01
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	84.85
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	84.66
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.62
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.59
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.53
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.49
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.42
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	84.4
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	84.36
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	84.31
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.25
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	84.18
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	84.13
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.9
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.87
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	83.72
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.7
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	83.55
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.48
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	83.41
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.38
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	83.31
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.2
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	82.91
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.77
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.47
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.46
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.45
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.39
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.34
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	82.31
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.23
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.17
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	82.15
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	81.97
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.92
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.83
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.63
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.49
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.48
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.47
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.4
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.29
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	81.28
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.22
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.22
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.12
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.92
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.88
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	80.88
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.84
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	80.65
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	80.43
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	80.38
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	80.21
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.14
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	80.09
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.08

>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...

Probab=100.00  E-value=4e-47  Score=283.27  Aligned_cols=92  Identities=39%  Similarity=0.662  Sum_probs=88.4

Q ss_pred             ccccCCCCcccchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecCCce
Q 031214           56 KKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPH  135 (164)
Q Consensus        56 ~~~vpd~~eqATGlER~ELla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp~  135 (164)
                      .|.|||++||||||||+||+++++|+|||+|+++++++|||+|||||||++++|||||+|.  +|+|+|+||||++|+|+
T Consensus         3 ~g~iPtd~eqATGlEr~Ella~~~G~Dpfd~~~~~~~~GTke~P~lVpS~~~~RiVGC~~~--~D~h~v~W~~l~~g~~~   80 (98)
T 1v54_F            3 GGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICE--EDNSTVIWFWLHKGEAQ   80 (98)
T ss_dssp             CCBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEECSSSEEEEEECCS--TTCSCCEEEEEESSSCE
T ss_pred             CCCCCChHHhccCHHHHHHHHHHcCCCcccccCCCCCCCcccCCeEeecCCCCeEEeecCC--CCCceeEEEEEeCCCce
Confidence            4689999999999999999999999999999999999999999999999999999999994  69999999999999999


Q ss_pred             ecCCCCceEEEEEe
Q 031214          136 ECPVCSQYFVLEVV  149 (164)
Q Consensus       136 RCpeCG~~FkL~~v  149 (164)
                      |||+||+||||++.
T Consensus        81 RC~eCG~~fkL~~~   94 (98)
T 1v54_F           81 RCPSCGTHYKLVPH   94 (98)
T ss_dssp             ECTTTCCEEEEECC
T ss_pred             ECCCCCeEEEEeee
Confidence            99999999999954

>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=6.9e-46  Score=288.51  Aligned_cols=94  Identities=38%  Similarity=0.641  Sum_probs=88.9

Q ss_pred             cccccCCCCcccchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecCCc
Q 031214           55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKP  134 (164)
Q Consensus        55 ~~~~vpd~~eqATGlER~ELla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp  134 (164)
                      ..|+|||++||||||||+||+++++|+|||||+++++++|||||||||||++++|||||+|.  +|+|+|+||||++|+|
T Consensus        33 ~~g~iPtd~eqATGlER~ELla~~~G~DpFd~~~~~~~~GTkedP~lVpS~~d~RiVGC~~~--~Dsh~v~Wf~L~kg~p  110 (129)
T 2y69_F           33 SGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICE--EDNSTVIWFWLHKGEA  110 (129)
T ss_dssp             --CBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEEESSSEEEEEECCS--TTCSCCEEEEEESSSC
T ss_pred             CCCCCCCHHHhccCHHHHHHHHHHcCCCccccCCCCCCCCcccCCeEeecCCCCeEEeecCC--CCCceeEEEEEeCCCc
Confidence            45799999999999999999999999999999999999999999999999999999999994  6999999999999999


Q ss_pred             eecCCCCceEEEEEeC
Q 031214          135 HECPVCSQYFVLEVVG  150 (164)
Q Consensus       135 ~RCpeCG~~FkL~~vg  150 (164)
                      +|||+||+||||++.-
T Consensus       111 ~RCpeCG~~fkL~~~e  126 (129)
T 2y69_F          111 QRCPSCGTHYKLVPHQ  126 (129)
T ss_dssp             EECTTTCCEEEEEECC
T ss_pred             eeCCCCCeEEEEeeec
Confidence            9999999999999654

>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-40  Score=238.54  Aligned_cols=78  Identities=23%  Similarity=0.448  Sum_probs=53.1

Q ss_pred             cCCCCCCCCCCC-CCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecCCceecCCCCceEEEEEeCCCCCCCC
Q 031214           79 EGKNILEIDYPT-GPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDG  157 (164)
Q Consensus        79 ~G~DpFd~~~~~-~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp~RCpeCG~~FkL~~vg~~~~p~~  157 (164)
                      +|+|||+|++++ +++|||||||||||++++|||||+|+| +|+|+|+||||++|+|+||||||+||||++||+++++|+
T Consensus         1 ~G~D~fd~~p~~~~~~GT~e~P~lVpS~~~~RiVGC~g~p-~d~h~v~W~~l~~g~~~RC~eCG~~fkL~~vg~~~~~hh   79 (80)
T 2odx_A            1 MMADVFDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSP-AGSHTIMWLKPTVNEVARCWECGSVYKLNPVGVPNDDHH   79 (80)
T ss_dssp             ------------------CCSCSEECCSSSSCCEEESSST-TCCSCCEEECCCTTCEEECSSSCCEEEECCCC-------
T ss_pred             CCcCcccccccccCCCCCccCCeEecCCCCCeEEeeeCCC-CCcceEEEEEecCCCCeECCCCCeEEEEEEcCCCCCCCC
Confidence            699999999998 489999999999999999999999986 799999999999999999999999999999999776543

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}

Probab=98.98  E-value=2.7e-10  Score=79.87  Aligned_cols=54  Identities=39%  Similarity=0.628  Sum_probs=45.9

Q ss_pred             CCCCCeeeeccCCceEEeecCCCCCCCcceEEEEe-ecCCceecCCCCceEEEEEeC
Q 031214           95 TKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL-EKGKPHECPVCSQYFVLEVVG  150 (164)
Q Consensus        95 Tke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L-~kGkp~RCpeCG~~FkL~~vg  150 (164)
                      |++.|-+|  ..+.|+|.|.|+.++..|..+|++| .++++..||+||..|+|+...
T Consensus         2 ~~~ape~i--~v~~r~v~CdGg~g~lgHPrVyl~ld~~~g~~~CpYCg~~f~l~~~~   56 (67)
T 2jrr_A            2 TIQAPETK--IVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSK   56 (67)
T ss_dssp             CCCCCEEE--EESSSEEEEEESSTTSEEEEEEEECCTTTSEEEETTTTEEEEETTSG
T ss_pred             CCCCCceE--EECCCEEEeCCCCCCCCCCEEEEEccCCCCeEECCCCCCEEEECCCc
Confidence            56677777  5588999999987778899999999 678899999999999998544

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}

Probab=98.76  E-value=7.7e-09  Score=74.74  Aligned_cols=53  Identities=30%  Similarity=0.583  Sum_probs=44.0

Q ss_pred             CCCCCeeeeccCCceEEeecCCCCCCCcceEEEEe-ecCCceecCCCCceEEEEEe
Q 031214           95 TKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL-EKGKPHECPVCSQYFVLEVV  149 (164)
Q Consensus        95 Tke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L-~kGkp~RCpeCG~~FkL~~v  149 (164)
                      |.+.|-+|  ..+.|+|.|.|+.++..|..+|++| .++.+..||+||..|+|+..
T Consensus        15 ~~~apevI--~V~~~~V~CdGg~g~LGHPrVyL~ld~~~g~~~CpYCg~~f~l~~~   68 (80)
T 2jvm_A           15 SIEAPETV--VVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESF   68 (80)
T ss_dssp             CCSCCSEE--EESCSEEEECCCSTTCCCCCEEEECCTTTCEEECSSSSCEEEEHHH
T ss_pred             ccCCCCeE--EECCcEEEcCCCCCCCCCCEEEEEccCCCCeEECCCCCCEEEecCC
Confidence            45666555  3447999999987788999999999 67889999999999999853

>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}

Probab=97.17  E-value=0.00025  Score=51.82  Aligned_cols=41  Identities=17%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             ceEEeecCCCCCCCcceEEEEeecCCceecCCCCceEEEEE
Q 031214          108 KRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEV  148 (164)
Q Consensus       108 ~RIVGC~g~p~eDsH~v~Wf~L~kGkp~RCpeCG~~FkL~~  148 (164)
                      .|.|-|.|..+.-.|--+|+.|.+.....||+||..|+|+-
T Consensus        22 ~~~v~CdG~~~plgHPrVyL~i~~~g~~~CpYCg~~y~~~~   62 (87)
T 2jz8_A           22 VKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRYDP   62 (87)
T ss_dssp             CSEEECCCSSCSSSSSSCEEECTTCCEECCTTTCCEEECCT
T ss_pred             CcEEEcCCCCCCCCCCEEEEEcCCCCeEECCCCCCEeEcCC
Confidence            45689999766667999999999988899999999999973

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=93.49  E-value=0.038  Score=38.59  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             ceEEeecCCCCCCCcceEEEEeecCCceecCCCCceEEEEEeC
Q 031214          108 KRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVG  150 (164)
Q Consensus       108 ~RIVGC~g~p~eDsH~v~Wf~L~kGkp~RCpeCG~~FkL~~vg  150 (164)
                      |-||||+|+-       .|..=..-+.+.|| ||..++++.+.
T Consensus         2 Y~vv~C~C~~-------~~~~~~~~kT~~C~-CG~~~~~~k~r   36 (71)
T 1gh9_A            2 YIIFRCDCGR-------ALYSREGAKTRKCV-CGRTVNVKDRR   36 (71)
T ss_dssp             EEEEEETTSC-------CEEEETTCSEEEET-TTEEEECCSSS
T ss_pred             eEEEECCCCC-------EEEEcCCCcEEECC-CCCeeeeceEE
Confidence            6799999842       24422234678898 99999986443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=92.51  E-value=0.055  Score=27.73  Aligned_cols=13  Identities=31%  Similarity=0.886  Sum_probs=11.5

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~k~f~   13 (29)
T 1rik_A            1 YKFACPECPKRFM   13 (29)
T ss_dssp             CCEECSSSSCEES
T ss_pred             CCccCCCCCchhC
Confidence            5899999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.07  E-value=0.078  Score=27.00  Aligned_cols=13  Identities=38%  Similarity=0.961  Sum_probs=11.8

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~~~f~   14 (30)
T 2m0d_A            2 KPYQCDYCGRSFS   14 (30)
T ss_dssp             CCEECTTTCCEES
T ss_pred             cCccCCCCCcccC
Confidence            6899999999996

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.99  E-value=0.032  Score=28.35  Aligned_cols=15  Identities=40%  Similarity=0.806  Sum_probs=12.5

Q ss_pred             CceecCCCCceEEEE
Q 031214          133 KPHECPVCSQYFVLE  147 (164)
Q Consensus       133 kp~RCpeCG~~FkL~  147 (164)
                      +|+.|++||..|.-.
T Consensus         1 kp~~C~~C~k~f~~~   15 (26)
T 2lvu_A            1 KPYVCERCGKRFVQS   15 (26)
Confidence            588999999999753

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.66  E-value=0.087  Score=26.87  Aligned_cols=13  Identities=38%  Similarity=0.835  Sum_probs=11.7

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~k~f~   14 (27)
T 2kvh_A            2 KPFSCSLCPQRSR   14 (27)
T ss_dssp             CCEECSSSSCEES
T ss_pred             cCccCCCcChhhC
Confidence            6899999999985

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.62  E-value=0.072  Score=27.50  Aligned_cols=13  Identities=31%  Similarity=0.789  Sum_probs=11.7

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~k~f~   14 (27)
T 2kvg_A            2 APYRCPLCRAGCP   14 (27)
T ss_dssp             CTEEETTTTEEES
T ss_pred             cCcCCCCCCcccC
Confidence            6899999999985

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.46  E-value=0.09  Score=26.65  Aligned_cols=13  Identities=31%  Similarity=0.851  Sum_probs=11.4

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 ~~~~C~~C~k~f~   13 (29)
T 2m0f_A            1 GPLKCRECGKQFT   13 (29)
T ss_dssp             CCEECTTTSCEES
T ss_pred             CCccCCCCCCccC
Confidence            5789999999985

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.36  E-value=0.051  Score=27.55  Aligned_cols=13  Identities=46%  Similarity=1.106  Sum_probs=11.2

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~~~f~   13 (29)
T 2m0e_A            1 KEHKCPHCDKKFN   13 (29)
T ss_dssp             CCCCCSSCCCCCC
T ss_pred             CCCcCCCCCcccC
Confidence            5889999999885

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=90.85  E-value=0.11  Score=26.49  Aligned_cols=13  Identities=38%  Similarity=1.055  Sum_probs=11.7

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~k~f~   14 (28)
T 2kvf_A            2 RPYSCSVCGKRFS   14 (28)
T ss_dssp             CSEECSSSCCEES
T ss_pred             cCccCCCCCcccC
Confidence            6899999999985

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.66  E-value=0.13  Score=27.92  Aligned_cols=14  Identities=36%  Similarity=0.833  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2els_A            7 GKIFTCEYCNKVFK   20 (36)
T ss_dssp             CCCEECTTTCCEES
T ss_pred             CCCEECCCCCceeC
Confidence            47999999999985

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=90.60  E-value=0.074  Score=27.11  Aligned_cols=13  Identities=31%  Similarity=0.894  Sum_probs=11.2

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~~~f~   13 (29)
T 1ard_A            1 RSFVCEVCTRAFA   13 (29)
T ss_dssp             CCCBCTTTCCBCS
T ss_pred             CCeECCCCCcccC
Confidence            5789999999885

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.50  E-value=0.13  Score=28.49  Aligned_cols=15  Identities=20%  Similarity=0.381  Sum_probs=12.9

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus         7 ~k~~~C~~C~k~f~~   21 (37)
T 2elm_A            7 GHLYYCSQCHYSSIT   21 (37)
T ss_dssp             SCEEECSSSSCEEEC
T ss_pred             CcCeECCCCCcccCC
Confidence            469999999999973

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=90.23  E-value=0.086  Score=28.80  Aligned_cols=14  Identities=43%  Similarity=0.992  Sum_probs=12.1

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|++|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (37)
T 1p7a_A            9 IKPFQCPDCDRSFS   22 (37)
T ss_dssp             SSSBCCTTTCCCBS
T ss_pred             CCCccCCCCCcccC
Confidence            46999999999885

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.17  E-value=0.15  Score=27.56  Aligned_cols=14  Identities=50%  Similarity=0.978  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2elt_A            7 GKPYKCPQCSYASA   20 (36)
T ss_dssp             CCSEECSSSSCEES
T ss_pred             CCCCCCCCCCcccC
Confidence            47999999999995

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=89.98  E-value=0.16  Score=27.11  Aligned_cols=14  Identities=29%  Similarity=0.657  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         5 ~k~~~C~~C~k~f~   18 (35)
T 2elx_A            5 SSGYVCALCLKKFV   18 (35)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeECCCCcchhC
Confidence            47899999999985

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=89.93  E-value=0.16  Score=27.35  Aligned_cols=14  Identities=29%  Similarity=0.840  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         5 ~k~~~C~~C~k~f~   18 (35)
T 1srk_A            5 KRPFVCRICLSAFT   18 (35)
T ss_dssp             CSCEECSSSCCEES
T ss_pred             CcCeeCCCCCcccC
Confidence            46999999999995

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=89.93  E-value=0.088  Score=27.11  Aligned_cols=13  Identities=31%  Similarity=0.812  Sum_probs=11.3

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~k~f~   13 (30)
T 1paa_A            1 KAYACGLCNRAFT   13 (30)
T ss_dssp             CCSBCTTTCCBCS
T ss_pred             CCcCCcccCcccC
Confidence            5789999999885

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.87  E-value=0.16  Score=27.61  Aligned_cols=14  Identities=36%  Similarity=0.852  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2elq_A            7 GKPFKCSLCEYATR   20 (36)
T ss_dssp             CCSEECSSSSCEES
T ss_pred             CCCccCCCCCchhC
Confidence            47999999999995

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=89.02  E-value=0.068  Score=27.56  Aligned_cols=14  Identities=36%  Similarity=0.930  Sum_probs=12.0

Q ss_pred             CceecCCCCceEEE
Q 031214          133 KPHECPVCSQYFVL  146 (164)
Q Consensus       133 kp~RCpeCG~~FkL  146 (164)
                      +|+.|++||..|.-
T Consensus         1 k~~~C~~C~k~f~~   14 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQ   14 (29)
Confidence            57899999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.34  E-value=0.19  Score=27.27  Aligned_cols=14  Identities=29%  Similarity=0.776  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2elv_A            7 GLLYDCHICERKFK   20 (36)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCeECCCCCCccC
Confidence            47999999999986

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.19  E-value=0.19  Score=27.43  Aligned_cols=14  Identities=43%  Similarity=1.267  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (37)
T 2elp_A            7 GRAMKCPYCDFYFM   20 (37)
T ss_dssp             CCCEECSSSSCEEC
T ss_pred             CCCeECCCCChhhc
Confidence            46899999999986

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=88.95  E-value=0.1  Score=26.58  Aligned_cols=13  Identities=23%  Similarity=0.452  Sum_probs=11.2

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~k~f~   13 (30)
T 1klr_A            1 KTYQCQYCEFRSA   13 (30)
T ss_dssp             CCCCCSSSSCCCS
T ss_pred             CCccCCCCCCccC
Confidence            5789999999885

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.15  E-value=0.14  Score=27.87  Aligned_cols=14  Identities=43%  Similarity=1.129  Sum_probs=12.1

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (37)
T 2elo_A            7 GRSYSCPVCEKSFS   20 (37)
T ss_dssp             CCCCEETTTTEECS
T ss_pred             CCCcCCCCCCCccC
Confidence            46899999999885

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=87.94  E-value=0.087  Score=28.45  Aligned_cols=13  Identities=31%  Similarity=0.961  Sum_probs=11.3

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 kp~~C~~C~k~f~   13 (32)
T 2kfq_A            1 YAFACPACPKRFM   13 (32)
T ss_dssp             CCSSSSSSCTTHH
T ss_pred             CCCCCCCCCcccC
Confidence            5899999999885

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=87.75  E-value=0.098  Score=26.81  Aligned_cols=14  Identities=36%  Similarity=0.671  Sum_probs=12.1

Q ss_pred             CceecCCCCceEEE
Q 031214          133 KPHECPVCSQYFVL  146 (164)
Q Consensus       133 kp~RCpeCG~~FkL  146 (164)
                      +|+.|++||..|.-
T Consensus         2 k~~~C~~C~k~f~~   15 (30)
T 2lvr_A            2 KPYVCIHCQRQFAD   15 (30)
Confidence            68999999999874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=87.88  E-value=0.14  Score=30.45  Aligned_cols=15  Identities=27%  Similarity=0.432  Sum_probs=13.0

Q ss_pred             cCCceecCCCCceEE
Q 031214          131 KGKPHECPVCSQYFV  145 (164)
Q Consensus       131 kGkp~RCpeCG~~Fk  145 (164)
                      ..+|+.|++||..|.
T Consensus         5 gekp~~C~~CgK~F~   19 (36)
T 1fv5_A            5 KPARFMCLPCGIAFS   19 (36)
T ss_dssp             SCCCCEETTTTEECS
T ss_pred             CccCeECCCCCCccC
Confidence            458999999999985

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=87.74  E-value=0.27  Score=27.29  Aligned_cols=14  Identities=21%  Similarity=0.634  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         4 ~k~~~C~~C~k~f~   17 (39)
T 1njq_A            4 PRSYTCSFCKREFR   17 (39)
T ss_dssp             SSSEECTTTCCEES
T ss_pred             CCceECCCCCcccC
Confidence            47899999999985

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=87.55  E-value=0.14  Score=27.85  Aligned_cols=13  Identities=31%  Similarity=0.886  Sum_probs=11.3

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||..|.
T Consensus         1 kp~~C~~C~k~F~   13 (33)
T 1rim_A            1 YKFACPECPKRFM   13 (33)
T ss_dssp             CCCCCSSSCCCCS
T ss_pred             CcccCCCCCchhC
Confidence            5899999999885

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=87.07  E-value=0.3  Score=28.99  Aligned_cols=15  Identities=27%  Similarity=0.769  Sum_probs=12.9

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|.+||..|..
T Consensus         5 ~kp~~C~~C~k~F~~   19 (48)
T 3iuf_A            5 DKPYACDICGKRYKN   19 (48)
T ss_dssp             TSCEECTTTCCEESS
T ss_pred             CcCEECCCcCcccCC
Confidence            479999999999963

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.07  E-value=0.2  Score=26.99  Aligned_cols=14  Identities=43%  Similarity=1.001  Sum_probs=12.0

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         7 ~~~~~C~~C~k~f~   20 (36)
T 2elr_A            7 GKTHLCDMCGKKFK   20 (36)
T ss_dssp             CSSCBCTTTCCBCS
T ss_pred             CCCeecCcCCCCcC
Confidence            46899999999885

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.95  E-value=0.32  Score=27.81  Aligned_cols=14  Identities=43%  Similarity=0.985  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (44)
T 2epv_A           10 EKPYECNECGKAFI   23 (44)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCeECCCCCcccC
Confidence            46999999999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.73  E-value=0.34  Score=27.10  Aligned_cols=14  Identities=43%  Similarity=0.959  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (42)
T 2en2_A            9 EKPYKCETCGARFV   22 (42)
T ss_dssp             SCSEECTTTCCEES
T ss_pred             CCCEeCCCcChhhC
Confidence            46999999999995

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=86.61  E-value=0.34  Score=27.03  Aligned_cols=14  Identities=29%  Similarity=0.686  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         9 ~~~~~C~~C~k~f~   22 (42)
T 2epc_A            9 ETPYLCGQCGKSFT   22 (42)
T ss_dssp             SCCEECSSSCCEES
T ss_pred             CCCeECCCCCcccC
Confidence            46999999999995

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.85  E-value=0.4  Score=26.76  Aligned_cols=14  Identities=29%  Similarity=0.648  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         8 ~k~~~C~~C~k~f~   21 (41)
T 2ept_A            8 QRVYECQECGKSFR   21 (41)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCeECCCCCCCcC
Confidence            46999999999996

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.81  E-value=0.4  Score=27.31  Aligned_cols=14  Identities=36%  Similarity=0.807  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2eow_A           10 EKPYKCNECGKAFR   23 (46)
T ss_dssp             CCCEECTTSCCEES
T ss_pred             CCCeeccccCChhc
Confidence            46999999999996

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.60  E-value=0.42  Score=27.09  Aligned_cols=15  Identities=40%  Similarity=0.696  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2emb_A           10 RKRYECSKCQATFNL   24 (44)
T ss_dssp             CSSEECTTTCCEESC
T ss_pred             CCCeECCCCCCccCC
Confidence            468999999999963

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.35  E-value=0.43  Score=27.30  Aligned_cols=14  Identities=29%  Similarity=0.797  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~F~   23 (46)
T 2emi_A           10 ERHYECSECGKAFI   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCCCCCCCCcccC
Confidence            46899999999996

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.29  E-value=0.43  Score=27.19  Aligned_cols=15  Identities=33%  Similarity=0.751  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2yts_A           10 EKPYICNECGKSFIQ   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CcCEECCCCChhhCC
Confidence            469999999999963

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.28  E-value=0.42  Score=27.06  Aligned_cols=15  Identities=27%  Similarity=0.815  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQ   24 (44)
T ss_dssp             CCSEECSSSSCEESS
T ss_pred             CCCeECCCCCchhCC
Confidence            469999999999963

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=85.25  E-value=0.44  Score=26.61  Aligned_cols=15  Identities=33%  Similarity=0.729  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus         8 ~k~~~C~~C~k~f~~   22 (42)
T 2el5_A            8 ENPYECSECGKAFNR   22 (42)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CCCccCCCcChhhCC
Confidence            468999999999963

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=85.01  E-value=0.39  Score=31.03  Aligned_cols=13  Identities=23%  Similarity=0.810  Sum_probs=9.9

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      ||+.|++||..|.
T Consensus         3 Kpy~C~~C~k~F~   15 (60)
T 4gzn_C            3 RPFFCNFCGKTYR   15 (60)
T ss_dssp             CCEECTTTCCEES
T ss_pred             CCccCCCCCCEeC
Confidence            6778888887774

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.01  E-value=0.45  Score=27.29  Aligned_cols=15  Identities=27%  Similarity=0.629  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2ytp_A           10 ERHYECSECGKAFAR   24 (46)
T ss_dssp             CCCEECSSSCCEESS
T ss_pred             CCCeECCcCCcccCC
Confidence            469999999999963

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.85  E-value=0.49  Score=26.59  Aligned_cols=15  Identities=40%  Similarity=0.769  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2eof_A           10 EKPYECNECQKAFNT   24 (44)
T ss_dssp             CCSEECTTTCCEESC
T ss_pred             CCCeECCCCCcccCC
Confidence            469999999999964

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.66  E-value=0.48  Score=26.98  Aligned_cols=15  Identities=33%  Similarity=0.731  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~~~~~C~~C~k~f~~   24 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQ   24 (46)
T ss_dssp             CCCEECSSSCCEESS
T ss_pred             CCCeECCCCCCccCC
Confidence            468999999999963

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.62  E-value=0.45  Score=27.27  Aligned_cols=14  Identities=36%  Similarity=0.814  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2em4_A           10 QRPYECIECGKAFK   23 (46)
T ss_dssp             SSSEECSSSCCEES
T ss_pred             CcCcCCCCCCCccC
Confidence            46999999999996

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.59  E-value=0.48  Score=26.96  Aligned_cols=15  Identities=40%  Similarity=0.844  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2ytf_A           10 EKPFECSECQKAFNT   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CCCcCCCCCCcccCC
Confidence            469999999999963

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.53  E-value=0.49  Score=27.04  Aligned_cols=14  Identities=36%  Similarity=0.859  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2en3_A           10 EKPFQCKECGMNFS   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeeCcccChhhC
Confidence            47999999999995

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=84.49  E-value=0.48  Score=27.18  Aligned_cols=14  Identities=43%  Similarity=0.973  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2emj_A           10 EKPFECAECGKSFS   23 (46)
T ss_dssp             CCSEECSSSSCEES
T ss_pred             CCCEECCCCCcccC
Confidence            46999999999996

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.42  E-value=0.5  Score=27.01  Aligned_cols=15  Identities=33%  Similarity=0.718  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2ep3_A           10 EKPYRCAECGKAFTD   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CCCeECCCCCchhCC
Confidence            469999999999963

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.40  E-value=0.41  Score=27.12  Aligned_cols=15  Identities=27%  Similarity=0.609  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~~~~~C~~C~k~F~~   24 (44)
T 2eox_A           10 SKSYNCNECGKAFTR   24 (44)
T ss_dssp             CCCEEETTTTEEESS
T ss_pred             CCCeECcccCcccCC
Confidence            469999999999963

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.36  E-value=0.32  Score=27.12  Aligned_cols=14  Identities=36%  Similarity=0.826  Sum_probs=12.2

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (42)
T 2ytb_A            9 EKPYRCDQCGKAFS   22 (42)
T ss_dssp             CCSBCCTTTTCCBS
T ss_pred             CCCeeCCCccchhC
Confidence            46999999999986

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.31  E-value=0.41  Score=27.46  Aligned_cols=15  Identities=53%  Similarity=1.057  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVL   24 (46)
T ss_dssp             CCSEEETTTTEEESS
T ss_pred             CCCeECcccChhhCC
Confidence            469999999999963

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.25  E-value=0.51  Score=26.95  Aligned_cols=14  Identities=57%  Similarity=1.087  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~F~   23 (46)
T 2em3_A           10 EKPYECKVCSKAFT   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCeECCCCCcccC
Confidence            46999999999996

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.18  E-value=0.42  Score=27.29  Aligned_cols=15  Identities=40%  Similarity=0.848  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (45)
T 2epu_A           10 QKPFECTHCGKSFRA   24 (45)
T ss_dssp             CCSEEETTTTEEESS
T ss_pred             CcCccCCCCCCccCC
Confidence            479999999999963

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=84.13  E-value=0.51  Score=28.25  Aligned_cols=14  Identities=29%  Similarity=0.878  Sum_probs=12.2

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        22 ~k~~~C~~C~k~f~   35 (54)
T 1yui_A           22 EQPATCPICYAVIR   35 (54)
T ss_dssp             SCCEECTTTCCEES
T ss_pred             CCCccCCCCCcccC
Confidence            46899999999985

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.90  E-value=0.53  Score=26.99  Aligned_cols=15  Identities=40%  Similarity=0.842  Sum_probs=12.9

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2emf_A           10 GKHFECTECGKAFTR   24 (46)
T ss_dssp             SCCEECSSSCCEESC
T ss_pred             CCCeECCCCCchhCC
Confidence            479999999999963

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.87  E-value=0.53  Score=26.99  Aligned_cols=15  Identities=27%  Similarity=0.558  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSC   24 (46)
T ss_dssp             SCCEECSSSCCEESS
T ss_pred             CCCEECcCCCCcCCC
Confidence            469999999999963

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.72  E-value=0.58  Score=26.71  Aligned_cols=15  Identities=33%  Similarity=0.724  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2eq0_A           10 EKPYKCHECGKVFRR   24 (46)
T ss_dssp             CCCEECTTTCCEESS
T ss_pred             CCCeECCCCCchhCC
Confidence            469999999999963

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.70  E-value=0.32  Score=27.48  Aligned_cols=15  Identities=33%  Similarity=0.702  Sum_probs=12.6

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2eoj_A           10 ENPYECCECGKVFSR   24 (44)
T ss_dssp             CCSCEETTTTEECSS
T ss_pred             CcCeeCCCCCCccCC
Confidence            469999999998863

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=83.55  E-value=0.28  Score=24.51  Aligned_cols=12  Identities=33%  Similarity=0.930  Sum_probs=9.6

Q ss_pred             ceecCCCCceEE
Q 031214          134 PHECPVCSQYFV  145 (164)
Q Consensus       134 p~RCpeCG~~Fk  145 (164)
                      |+.|++||..|.
T Consensus         1 ~~~C~~C~k~f~   12 (27)
T 1znf_A            1 XYKCGLCERSFV   12 (27)
T ss_dssp             -CBCSSSCCBCS
T ss_pred             CccCCCCCCcCC
Confidence            578999999885

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=83.48  E-value=0.58  Score=26.63  Aligned_cols=14  Identities=36%  Similarity=0.814  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2em9_A           10 EKPYNCKECGKSFR   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCeECCccccccC
Confidence            46999999999996

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.41  E-value=0.38  Score=26.80  Aligned_cols=14  Identities=36%  Similarity=0.840  Sum_probs=12.2

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         8 ~k~~~C~~C~k~f~   21 (42)
T 2yte_A            8 EKPYSCAECKETFS   21 (42)
T ss_dssp             CCSCBCTTTCCBCS
T ss_pred             CCCeECCCCCCccC
Confidence            46999999999885

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.38  E-value=0.58  Score=26.79  Aligned_cols=14  Identities=36%  Similarity=0.861  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2yto_A           10 EKPYKCSDCGKAFT   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCEECcccCCccC
Confidence            46999999999996

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.31  E-value=0.58  Score=26.72  Aligned_cols=14  Identities=36%  Similarity=0.826  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2emy_A           10 ENPYECHECGKAFS   23 (46)
T ss_dssp             SCCEECSSSCCEES
T ss_pred             CcCcCCCCCCcccC
Confidence            47999999999996

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.20  E-value=0.63  Score=26.47  Aligned_cols=14  Identities=36%  Similarity=0.930  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~f~   23 (46)
T 2eor_A           10 EKPYNCEECGKAFI   23 (46)
T ss_dssp             CCSEECTTTCCEES
T ss_pred             CcCccCCCCCCCcC
Confidence            46899999999996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.91  E-value=0.38  Score=27.01  Aligned_cols=14  Identities=36%  Similarity=0.868  Sum_probs=12.2

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (42)
T 2eos_A            9 EKPYPCEICGTRFR   22 (42)
T ss_dssp             SCCBCCSSSCCCBS
T ss_pred             CCCEECCCCCCccC
Confidence            46999999999986

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.77  E-value=0.39  Score=27.64  Aligned_cols=15  Identities=40%  Similarity=0.926  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eon_A           10 EKPYKCQVCGKAFRV   24 (46)
T ss_dssp             CCSCBCSSSCCBCSS
T ss_pred             CcccCCCCCCcccCc
Confidence            469999999999863

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.47  E-value=0.66  Score=26.54  Aligned_cols=14  Identities=29%  Similarity=0.736  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2eoo_A           10 ERPYGCNECGKNFG   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCEEccccCcccC
Confidence            46999999999996

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.46  E-value=0.65  Score=26.49  Aligned_cols=15  Identities=33%  Similarity=0.786  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQ   24 (46)
T ss_dssp             CSSEECSSSCCEESS
T ss_pred             CCCeECCcCCchhCC
Confidence            469999999999963

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.45  E-value=0.67  Score=26.53  Aligned_cols=14  Identities=36%  Similarity=0.864  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2em2_A           10 EKPFKCKECGKAFR   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCEECCcCCchhC
Confidence            46899999999996

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.39  E-value=0.67  Score=26.42  Aligned_cols=14  Identities=36%  Similarity=0.790  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2ytj_A           10 EKPYICAECGKAFT   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCeECCCCChhhC
Confidence            46999999999996

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.34  E-value=0.66  Score=26.45  Aligned_cols=14  Identities=36%  Similarity=0.880  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~f~   23 (46)
T 2ytk_A           10 EKPYKCNECGKVFT   23 (46)
T ss_dssp             SCSEECSSSCCEES
T ss_pred             CCCEeCCcCCCccC
Confidence            46999999999996

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.32  E-value=0.64  Score=26.51  Aligned_cols=15  Identities=33%  Similarity=0.735  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2ene_A           10 EKPYKCNECGKVFRH   24 (46)
T ss_dssp             SSSEECSSSCCEESS
T ss_pred             CCCeECCCCCchhCC
Confidence            469999999999963

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.31  E-value=0.68  Score=26.30  Aligned_cols=15  Identities=33%  Similarity=0.824  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2epw_A           10 EKPCKCTECGKAFCW   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CCCeeCCCCCCccCC
Confidence            468999999999963

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=82.25  E-value=0.66  Score=26.44  Aligned_cols=14  Identities=29%  Similarity=0.655  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2ema_A           10 EKRYKCNECGKVFS   23 (46)
T ss_dssp             SCCEECSSSCCEES
T ss_pred             CcCcCCCCCcchhC
Confidence            46999999999996

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.23  E-value=0.67  Score=26.53  Aligned_cols=15  Identities=40%  Similarity=0.868  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~~~~~C~~C~k~f~~   24 (46)
T 2em5_A           10 TKSHQCHECGRGFTL   24 (46)
T ss_dssp             SCSEECSSSCCEESS
T ss_pred             CCCeECCcCCCccCC
Confidence            468999999999963

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.17  E-value=0.69  Score=26.27  Aligned_cols=15  Identities=40%  Similarity=0.766  Sum_probs=12.6

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eme_A           10 EKPYVCDYCGKAFGL   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CCCeECCCCChhhCC
Confidence            469999999999963

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.15  E-value=0.68  Score=26.13  Aligned_cols=14  Identities=36%  Similarity=0.904  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus         8 ~k~~~C~~C~k~f~   21 (44)
T 2emx_A            8 EKPFGCSCCEKAFS   21 (44)
T ss_dssp             CCCEECSSSSCEES
T ss_pred             CcCccCCCCCcccC
Confidence            46999999999996

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.13  E-value=0.73  Score=26.27  Aligned_cols=14  Identities=36%  Similarity=0.899  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2emh_A           10 ERPYICTVCGKAFT   23 (46)
T ss_dssp             CCSEECTTTCCEES
T ss_pred             CCCcCCCCCCchhC
Confidence            46999999999996

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.04  E-value=0.58  Score=26.72  Aligned_cols=15  Identities=27%  Similarity=0.634  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNS   24 (46)
T ss_dssp             CCSEEETTTTEEESC
T ss_pred             CCCeECCCCCCccCC
Confidence            469999999999964

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=81.97  E-value=0.69  Score=26.27  Aligned_cols=15  Identities=40%  Similarity=0.824  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2el4_A           10 VKPYGCSQCAKTFSL   24 (46)
T ss_dssp             CCSEECSSSSCEESS
T ss_pred             CCceECCCCCchhCC
Confidence            468999999999963

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.92  E-value=0.72  Score=26.29  Aligned_cols=14  Identities=50%  Similarity=1.044  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2eml_A           10 EKPYECSVCGKAFS   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeeCCCcCCccC
Confidence            46999999999996

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.83  E-value=0.76  Score=26.19  Aligned_cols=15  Identities=27%  Similarity=0.709  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~~~~~C~~C~k~f~~   24 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQ   24 (46)
T ss_dssp             CCSEECTTTCCEESS
T ss_pred             CCCeECCCCCcccCC
Confidence            469999999999963

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.63  E-value=0.78  Score=26.14  Aligned_cols=14  Identities=36%  Similarity=0.933  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~f~   23 (46)
T 2yso_A           10 EKSHQCRECGEIFF   23 (46)
T ss_dssp             CCCEECTTTCCEES
T ss_pred             CCCEEccccChhhC
Confidence            46899999999996

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.49  E-value=0.49  Score=27.03  Aligned_cols=14  Identities=29%  Similarity=0.812  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2emg_A           10 ENPFICSECGKVFT   23 (46)
T ss_dssp             CCSCBCTTTCCBCS
T ss_pred             CCCEECCccCcccC
Confidence            46899999999986

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.48  E-value=0.76  Score=26.18  Aligned_cols=15  Identities=33%  Similarity=0.689  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2emp_A           10 VKPYMCNECGKAFSV   24 (46)
T ss_dssp             CCSEECSSSCCEESC
T ss_pred             CcCeECCCCCchhCC
Confidence            469999999999963

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.47  E-value=0.76  Score=26.18  Aligned_cols=15  Identities=33%  Similarity=0.802  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2em7_A           10 EKPYKCEECGKGFIC   24 (46)
T ss_dssp             CCSEECSSSCCEESC
T ss_pred             CcCccCCCccchhCC
Confidence            468999999999964

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.40  E-value=0.47  Score=27.22  Aligned_cols=14  Identities=50%  Similarity=1.004  Sum_probs=12.2

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2enh_A           10 EKPYECDVCRKAFS   23 (46)
T ss_dssp             SSSCBCTTTCCBCS
T ss_pred             CCCcCCCCcCchhC
Confidence            46999999999986

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.29  E-value=0.78  Score=26.14  Aligned_cols=14  Identities=36%  Similarity=0.845  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2enc_A           10 EKPFKCEECGKGFY   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCcCCCCCCCcCC
Confidence            46999999999996

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=81.28  E-value=0.43  Score=31.77  Aligned_cols=17  Identities=18%  Similarity=0.452  Sum_probs=14.1

Q ss_pred             ecCCceecCCCCceEEE
Q 031214          130 EKGKPHECPVCSQYFVL  146 (164)
Q Consensus       130 ~kGkp~RCpeCG~~FkL  146 (164)
                      .+.+|+.|.+||..|.-
T Consensus         9 ~~ekpy~C~~CgK~F~~   25 (66)
T 2epp_A            9 REAGILPCGLCGKVFTD   25 (66)
T ss_dssp             CCCCCCCCTTTCCCCSC
T ss_pred             CCccCcCCCCCCCccCC
Confidence            45689999999999964

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.22  E-value=0.79  Score=26.21  Aligned_cols=14  Identities=29%  Similarity=0.705  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2em8_A           10 EKPYKCVECGKGYK   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeECcccCchhC
Confidence            46999999999996

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.22  E-value=0.41  Score=27.36  Aligned_cols=15  Identities=33%  Similarity=0.786  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2yti_A           10 EKPYKCNECGKVFTQ   24 (46)
T ss_dssp             CCTTCCSSSCCCCSS
T ss_pred             CcCeECCCCCcccCC
Confidence            469999999999863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.12  E-value=0.76  Score=29.59  Aligned_cols=14  Identities=36%  Similarity=1.004  Sum_probs=12.4

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        30 ekp~~C~~C~k~F~   43 (60)
T 4gzn_C           30 YRPRSCPECGKCFR   43 (60)
T ss_dssp             CCCEECTTTCCEES
T ss_pred             CcCeECCCCCCCcC
Confidence            46999999999996

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.06  E-value=0.5  Score=27.01  Aligned_cols=15  Identities=33%  Similarity=0.786  Sum_probs=12.6

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2enf_A           10 EKPYKCNECGKVFTQ   24 (46)
T ss_dssp             CCSCBCSSSCCBCSS
T ss_pred             CcCeECCCCCcccCC
Confidence            468999999999863

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.92  E-value=0.82  Score=26.05  Aligned_cols=15  Identities=40%  Similarity=0.950  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2ep2_A           10 EKPYECSICGKSFTK   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CcCcCCCCCCcccCC
Confidence            468999999999963

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.88  E-value=0.45  Score=26.74  Aligned_cols=15  Identities=33%  Similarity=0.578  Sum_probs=12.6

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2en7_A           10 MKPYVCNECGKAFRS   24 (44)
T ss_dssp             SSSSCCTTTCCCCSS
T ss_pred             CcCeECCCCCCccCC
Confidence            468999999998863

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=80.88  E-value=0.65  Score=23.29  Aligned_cols=13  Identities=23%  Similarity=0.442  Sum_probs=11.2

Q ss_pred             CceecC--CCCceEE
Q 031214          133 KPHECP--VCSQYFV  145 (164)
Q Consensus       133 kp~RCp--eCG~~Fk  145 (164)
                      +|+.|+  +||..|.
T Consensus         1 k~~~C~~~~C~k~f~   15 (29)
T 2ab3_A            1 MVYVCHFENCGRSFN   15 (29)
T ss_dssp             CCEEECSTTTCEEES
T ss_pred             CCCCCcCCcCcCccC
Confidence            478999  9999985

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.84  E-value=0.83  Score=25.93  Aligned_cols=14  Identities=36%  Similarity=1.118  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2emm_A           10 ERPHKCNECGKSFI   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeeCCCCChhhC
Confidence            46999999999996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.65  E-value=0.48  Score=27.07  Aligned_cols=15  Identities=33%  Similarity=0.727  Sum_probs=12.6

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eq1_A           10 EKPYKCNECGKAFRA   24 (46)
T ss_dssp             SCCCCCTTTTCCCSS
T ss_pred             CCCeECCcCChhhCC
Confidence            479999999999863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.43  E-value=0.49  Score=26.95  Aligned_cols=15  Identities=40%  Similarity=0.877  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eq3_A           10 EKPYECNQCGKAFSV   24 (46)
T ss_dssp             CCSSEETTTTEECSS
T ss_pred             CCCeECCCCChhhCC
Confidence            469999999999863

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=80.38  E-value=0.85  Score=26.06  Aligned_cols=14  Identities=29%  Similarity=0.757  Sum_probs=12.3

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2el6_A           10 VNPYKCSQCEKSFS   23 (46)
T ss_dssp             CCSEECSSSSCEES
T ss_pred             CCCeECCCCCcccC
Confidence            46899999999996

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.21  E-value=0.52  Score=26.77  Aligned_cols=14  Identities=29%  Similarity=0.705  Sum_probs=12.2

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~f~   23 (44)
T 2eou_A           10 KTTSECQECGKIFR   23 (44)
T ss_dssp             SCCCCCTTTCCCCS
T ss_pred             CcCeECCCCCcccC
Confidence            46899999999986

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.14  E-value=0.5  Score=27.11  Aligned_cols=15  Identities=40%  Similarity=0.877  Sum_probs=12.5

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eoh_A           10 KKPYECKECRKTFIQ   24 (46)
T ss_dssp             SCSCCCSSSCCCCSS
T ss_pred             CCCcCCCCcCchhCC
Confidence            469999999998863

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=80.09  E-value=0.86  Score=26.87  Aligned_cols=14  Identities=29%  Similarity=0.612  Sum_probs=12.0

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|++|++||..|.
T Consensus        30 ~~~~~C~~C~~~f~   43 (57)
T 3uk3_C           30 EKPYKCEFCEYAAA   43 (57)
T ss_dssp             CCCEECSSSSCEES
T ss_pred             CCCcCCCCCcchhC
Confidence            46899999999985

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.08  E-value=0.92  Score=25.72  Aligned_cols=15  Identities=33%  Similarity=0.813  Sum_probs=12.7

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|++||..|.-
T Consensus        10 ~~~~~C~~C~k~f~~   24 (46)
T 2en8_A           10 EKSHTCDECGKNFCY   24 (46)
T ss_dssp             CSSEECTTTCCEESS
T ss_pred             CCCeECCCcCcccCC
Confidence            468999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1v54f_	98	g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow	3e-36

>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Cytochrome c oxidase Subunit F
domain: Cytochrome c oxidase Subunit F
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (299), Expect = 3e-36
 Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G++   I  P    GTK+ P +V S  +KRIVGC     ED   V+
Sbjct: 13  ATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVI 70

Query: 126 WFWLEKGKPHECPVCSQYFVLE 147
           WFWL KG+   CP C  ++ L 
Sbjct: 71  WFWLHKGEAQRCPSCGTHYKLV 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1v54f_	98	Cytochrome c oxidase Subunit F {Cow (Bos taurus) [	100.0
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.4
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	93.13
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.13
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	91.91
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	91.62
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	91.05
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.8
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	90.58
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	90.49
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	89.92
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	89.37
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	88.34
d1dxga_	36	Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}	81.8
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	81.36

>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Cytochrome c oxidase Subunit F
domain: Cytochrome c oxidase Subunit F
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-48  Score=289.32  Aligned_cols=90  Identities=40%  Similarity=0.691  Sum_probs=87.5

Q ss_pred             ccccCCCCcccchHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeeeeccCCceEEeecCCCCCCCcceEEEEeecCCce
Q 031214           56 KKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPH  135 (164)
Q Consensus        56 ~~~vpd~~eqATGlER~ELla~~~G~DpFd~~~~~~p~GTke~P~lVpS~~~~RIVGC~g~p~eDsH~v~Wf~L~kGkp~  135 (164)
                      .|+|||++||||||||+||+|+++|+|||||+++++++|||||||||||++++|||||+|  ++|+|+|+||||++|+|+
T Consensus         3 ~g~iptd~EqATGlEr~ella~~~g~D~fd~~~~~~~~GTke~P~lVpS~~~~RiVGC~~--~~D~h~v~W~~l~~g~p~   80 (98)
T d1v54f_           3 GGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQ   80 (98)
T ss_dssp             CCBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEECSSSEEEEEECC--STTCSCCEEEEEESSSCE
T ss_pred             CCcCCChHHHhhhHHHHHHHHHhcCCChhhccCCcCCCCCCcCCcEecCCCCceEEeecC--CCCCceeEEEEEeCCCCc
Confidence            578999999999999999999999999999999999999999999999999999999999  369999999999999999


Q ss_pred             ecCCCCceEEEE
Q 031214          136 ECPVCSQYFVLE  147 (164)
Q Consensus       136 RCpeCG~~FkL~  147 (164)
                      ||++||+||||+
T Consensus        81 RC~eCG~~fkL~   92 (98)
T d1v54f_          81 RCPSCGTHYKLV   92 (98)
T ss_dssp             ECTTTCCEEEEE
T ss_pred             ccCCCCcEEEEe
Confidence            999999999998

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0029  Score=35.34  Aligned_cols=13  Identities=38%  Similarity=0.879  Sum_probs=11.9

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      ||++|.|||..|.
T Consensus         1 KPy~C~eCgK~F~   13 (26)
T d1x6ea2           1 KPYKCLECGKAFS   13 (26)
T ss_dssp             CCEECSSSCCEES
T ss_pred             CCccCCCCcCeec
Confidence            7999999999995

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.13  E-value=0.019  Score=32.11  Aligned_cols=13  Identities=38%  Similarity=1.083  Sum_probs=12.1

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      ||+.|++||..|.
T Consensus         2 KPy~C~~C~k~F~   14 (28)
T d1a1ia2           2 KPFQCRICMRNFS   14 (28)
T ss_dssp             CCEECTTTCCEES
T ss_pred             cCccCCCCcCEec
Confidence            7999999999995

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.012  Score=34.08  Aligned_cols=15  Identities=47%  Similarity=0.979  Sum_probs=13.2

Q ss_pred             CceecCCCCceEEEE
Q 031214          133 KPHECPVCSQYFVLE  147 (164)
Q Consensus       133 kp~RCpeCG~~FkL~  147 (164)
                      ||+.||.|++-||-+
T Consensus         2 kp~~cpic~qrfkrk   16 (32)
T d2epqa1           2 KPYSCPVCGLRFKRK   16 (32)
T ss_dssp             CSSEETTTTEECSCH
T ss_pred             CCcccchHHHHhhcc
Confidence            799999999999853

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.032  Score=32.15  Aligned_cols=14  Identities=36%  Similarity=0.762  Sum_probs=12.5

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|.+||.-|.
T Consensus         5 ekpy~C~~Cgk~F~   18 (33)
T d1x6ea1           5 EKPYGCVECGKAFS   18 (33)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCeeCCCCCCEeC
Confidence            47999999999996

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.024  Score=33.23  Aligned_cols=14  Identities=21%  Similarity=0.624  Sum_probs=12.6

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .+|+.|++||..|.
T Consensus        10 ekpy~C~~CgK~F~   23 (38)
T d2cota2          10 RRRYKCDECGKSFS   23 (38)
T ss_dssp             SCSSBCSSSCCBCS
T ss_pred             CCCEecCCCCceee
Confidence            57999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.045  Score=31.79  Aligned_cols=13  Identities=46%  Similarity=1.024  Sum_probs=11.9

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||.-|.
T Consensus         7 kP~~C~~C~k~F~   19 (36)
T d2ct1a2           7 KPYECYICHARFT   19 (36)
T ss_dssp             CSEECTTTCCEES
T ss_pred             CCEeCCCCccccc
Confidence            6999999999995

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.049  Score=32.35  Aligned_cols=15  Identities=40%  Similarity=0.811  Sum_probs=13.3

Q ss_pred             cCCceecCCCCceEE
Q 031214          131 KGKPHECPVCSQYFV  145 (164)
Q Consensus       131 kGkp~RCpeCG~~Fk  145 (164)
                      -+||+.|.+||..|.
T Consensus         2 ~~Kpy~C~~Cgk~F~   16 (39)
T d2epsa1           2 VGKPYICQSCGKGFS   16 (39)
T ss_dssp             SSCCEECSSSCCEES
T ss_pred             CCCCccCCCCCCCcC
Confidence            368999999999996

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.58  E-value=0.05  Score=31.66  Aligned_cols=13  Identities=31%  Similarity=0.932  Sum_probs=12.0

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||.-|.
T Consensus         6 kPy~C~~C~k~F~   18 (35)
T d1srka_           6 RPFVCRICLSAFT   18 (35)
T ss_dssp             SCEECSSSCCEES
T ss_pred             ccccCCCCCCccc
Confidence            7999999999995

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=90.49  E-value=0.034  Score=31.05  Aligned_cols=13  Identities=31%  Similarity=0.894  Sum_probs=11.7

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      +|+.|++||.-|.
T Consensus         1 kp~~C~~C~k~F~   13 (29)
T d2adra1           1 RSFVCEVCTRAFA   13 (29)
T ss_dssp             CCBCCTTTCCCBS
T ss_pred             CcCCCCCCCCCCC
Confidence            6999999999885

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.061  Score=31.10  Aligned_cols=15  Identities=33%  Similarity=0.727  Sum_probs=12.8

Q ss_pred             CCceecCCCCceEEE
Q 031214          132 GKPHECPVCSQYFVL  146 (164)
Q Consensus       132 Gkp~RCpeCG~~FkL  146 (164)
                      .+|+.|.+||..|..
T Consensus         6 ekPy~C~~C~k~F~~   20 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQ   20 (36)
T ss_dssp             CCCEECSSSSCEESS
T ss_pred             CCCEECCCCCCCcCC
Confidence            369999999999963

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.043  Score=30.73  Aligned_cols=13  Identities=38%  Similarity=1.022  Sum_probs=11.6

Q ss_pred             CceecCCCCceEE
Q 031214          133 KPHECPVCSQYFV  145 (164)
Q Consensus       133 kp~RCpeCG~~Fk  145 (164)
                      ||+.|++||.-|.
T Consensus         1 Kpy~C~~C~k~F~   13 (29)
T d1sp1a_           1 KKFACPECPKRFM   13 (29)
T ss_dssp             CCSCCTTTTCCCS
T ss_pred             CCEECCcCCCeec
Confidence            6899999999885

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.34  E-value=0.059  Score=31.27  Aligned_cols=14  Identities=43%  Similarity=0.992  Sum_probs=12.1

Q ss_pred             CCceecCCCCceEE
Q 031214          132 GKPHECPVCSQYFV  145 (164)
Q Consensus       132 Gkp~RCpeCG~~Fk  145 (164)
                      .||+.|++||.-|.
T Consensus         9 eKPy~C~~C~k~F~   22 (37)
T d1p7aa_           9 IKPFQCPDCDRSFS   22 (37)
T ss_dssp             SSSBCCTTTCCCBS
T ss_pred             ccCeEeCCCCCEec
Confidence            36999999999885

>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulforedoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=81.80  E-value=0.68  Score=27.27  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=19.8

Q ss_pred             ecCCceecCCCCceEEEEEeCCC
Q 031214          130 EKGKPHECPVCSQYFVLEVVGPG  152 (164)
Q Consensus       130 ~kGkp~RCpeCG~~FkL~~vg~~  152 (164)
                      ++++.++|..||+.-.+...|.|
T Consensus         2 ~~~evYkC~~CGNiVeV~~~g~G   24 (36)
T d1dxga_           2 NEGDVYKCELCGQVVKVLEEGGG   24 (36)
T ss_dssp             CTTCEEECTTTCCEEEEEECCSS
T ss_pred             CcccEEEeccCCcEEEEEECCCc
Confidence            47889999999999998888764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=0.17  Score=27.83  Aligned_cols=12  Identities=50%  Similarity=1.334  Sum_probs=10.6

Q ss_pred             ceecCCCCceEE
Q 031214          134 PHECPVCSQYFV  145 (164)
Q Consensus       134 p~RCpeCG~~Fk  145 (164)
                      |+.|+.||..|.
T Consensus         1 phkc~~c~kcfs   12 (26)
T d2dmda2           1 PHKCEVCGKCFS   12 (26)
T ss_dssp             CCCBTTTTBCCC
T ss_pred             CCccchhhhHhc
Confidence            789999999984