Query 031215
Match_columns 164
No_of_seqs 172 out of 1113
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0g_A Nicotinate-nucleotide p 100.0 1.2E-48 4.2E-53 333.8 13.7 147 17-164 17-165 (300)
2 1x1o_A Nicotinate-nucleotide p 100.0 3.4E-47 1.2E-51 323.1 15.8 140 24-164 12-153 (286)
3 3tqv_A Nicotinate-nucleotide p 100.0 9.6E-47 3.3E-51 320.7 16.8 140 22-164 15-156 (287)
4 1o4u_A Type II quinolic acid p 100.0 7.1E-46 2.4E-50 315.0 15.9 142 18-164 8-150 (285)
5 3gnn_A Nicotinate-nucleotide p 100.0 1.9E-45 6.5E-50 314.2 14.1 139 24-164 27-167 (298)
6 3paj_A Nicotinate-nucleotide p 100.0 9.6E-45 3.3E-49 312.3 15.7 139 25-164 45-189 (320)
7 1qpo_A Quinolinate acid phosph 100.0 1E-44 3.4E-49 307.7 12.7 140 23-164 7-152 (284)
8 2b7n_A Probable nicotinate-nuc 100.0 9.5E-42 3.2E-46 287.1 15.9 136 25-164 2-139 (273)
9 2jbm_A Nicotinate-nucleotide p 100.0 7.1E-41 2.4E-45 285.4 16.1 134 26-164 17-154 (299)
10 1qap_A Quinolinic acid phospho 100.0 7.8E-41 2.7E-45 285.1 15.9 137 25-164 21-166 (296)
11 3c2e_A Nicotinate-nucleotide p 100.0 2.7E-40 9.1E-45 281.3 14.9 135 25-164 12-156 (294)
12 2i1o_A Nicotinate phosphoribos 100.0 1E-28 3.5E-33 217.6 8.7 132 27-164 15-161 (398)
13 2i14_A Nicotinate-nucleotide p 100.0 6.5E-29 2.2E-33 218.6 7.3 132 27-164 15-157 (395)
14 2f7f_A Nicotinate phosphoribos 99.8 3.8E-19 1.3E-23 160.4 11.7 114 50-164 29-179 (494)
15 3os4_A Naprtase, nicotinate ph 98.2 1.3E-06 4.6E-11 77.1 6.0 103 53-155 32-182 (407)
16 4hl7_A Naprtase, nicotinate ph 97.8 7.4E-06 2.5E-10 73.2 3.4 102 53-154 36-191 (446)
17 1yir_A Naprtase 2, nicotinate 97.8 6.9E-05 2.4E-09 66.0 8.9 96 53-155 36-186 (408)
18 3dhf_A Nicotinamide phosphorib 97.6 0.00011 3.6E-09 66.3 7.8 69 85-155 114-201 (484)
19 1vlp_A Naprtase, nicotinate ph 97.4 0.00016 5.3E-09 64.4 6.0 96 55-154 43-196 (441)
20 2im5_A Nicotinate phosphoribos 97.4 0.00066 2.3E-08 59.5 9.1 94 53-155 27-173 (394)
21 1ybe_A Naprtase, nicotinate ph 97.1 0.0022 7.5E-08 57.1 9.3 93 55-155 53-209 (449)
22 3crk_C Dihydrolipoyllysine-res 88.3 0.39 1.3E-05 32.5 3.3 25 85-109 21-45 (87)
23 1z6h_A Biotin/lipoyl attachmen 87.9 0.45 1.5E-05 30.4 3.3 23 87-109 11-33 (72)
24 1iyu_A E2P, dihydrolipoamide a 87.7 0.42 1.4E-05 31.4 3.1 23 87-109 16-38 (79)
25 2dnc_A Pyruvate dehydrogenase 87.1 0.47 1.6E-05 33.1 3.2 25 85-109 23-47 (98)
26 2dsj_A Pyrimidine-nucleoside ( 86.7 8.7 0.0003 33.8 11.8 58 53-111 324-394 (423)
27 2d5d_A Methylmalonyl-COA decar 86.4 0.62 2.1E-05 29.7 3.3 22 88-109 18-39 (74)
28 1qjo_A Dihydrolipoamide acetyl 85.9 0.54 1.9E-05 30.8 2.8 25 85-109 16-40 (80)
29 2dne_A Dihydrolipoyllysine-res 85.0 0.57 1.9E-05 33.4 2.7 25 85-109 23-47 (108)
30 1k8m_A E2 component of branche 84.8 0.5 1.7E-05 32.6 2.3 25 85-109 20-44 (93)
31 1brw_A PYNP, protein (pyrimidi 84.7 8 0.00027 34.1 10.5 59 53-111 331-402 (433)
32 1ghj_A E2, E2, the dihydrolipo 84.5 0.45 1.6E-05 31.3 1.9 24 86-109 18-41 (79)
33 1dcz_A Transcarboxylase 1.3S s 83.9 0.95 3.2E-05 29.3 3.3 22 88-109 21-42 (77)
34 2dn8_A Acetyl-COA carboxylase 83.6 0.76 2.6E-05 31.8 2.9 21 88-108 30-50 (100)
35 1gjx_A Pyruvate dehydrogenase; 83.5 0.6 2.1E-05 30.7 2.2 24 86-109 18-41 (81)
36 1bdo_A Acetyl-COA carboxylase; 82.9 0.58 2E-05 30.8 1.9 22 88-109 24-45 (80)
37 1y8o_B Dihydrolipoyllysine-res 82.2 1 3.6E-05 33.3 3.3 25 85-109 43-67 (128)
38 3h5q_A PYNP, pyrimidine-nucleo 82.2 10 0.00035 33.5 10.2 59 53-112 334-405 (436)
39 2kcc_A Acetyl-COA carboxylase 81.8 1.3 4.4E-05 29.7 3.4 23 86-108 16-38 (84)
40 2l5t_A Lipoamide acyltransfera 81.8 0.49 1.7E-05 30.9 1.2 24 86-109 18-41 (77)
41 2k32_A A; NMR {Campylobacter j 81.2 1.2 4.1E-05 31.2 3.2 22 88-109 14-35 (116)
42 2ejm_A Methylcrotonoyl-COA car 80.9 1.2 4E-05 30.9 3.0 22 88-109 27-48 (99)
43 1uou_A Thymidine phosphorylase 78.6 11 0.00036 33.8 9.1 60 53-112 368-438 (474)
44 2tpt_A Thymidine phosphorylase 78.3 6.6 0.00023 34.7 7.7 62 53-114 336-410 (440)
45 2jku_A Propionyl-COA carboxyla 75.9 1.6 5.5E-05 29.9 2.4 22 88-109 38-59 (94)
46 1pmr_A Dihydrolipoyl succinylt 74.2 0.35 1.2E-05 32.0 -1.3 23 87-109 20-42 (80)
47 2k7v_A Dihydrolipoyllysine-res 64.6 0.81 2.8E-05 30.6 -1.2 23 87-109 14-36 (85)
48 3our_B EIIA, phosphotransferas 62.0 5.5 0.00019 31.4 3.1 21 87-107 118-138 (183)
49 1zy8_K Pyruvate dehydrogenase 61.5 1.7 5.8E-05 35.1 0.0 23 86-108 20-42 (229)
50 3fpp_A Macrolide-specific effl 60.3 5.3 0.00018 32.5 2.8 22 88-109 44-65 (341)
51 2f1m_A Acriflavine resistance 59.8 3.4 0.00012 32.7 1.5 23 88-110 35-57 (277)
52 2gpr_A Glucose-permease IIA co 58.6 7 0.00024 29.7 3.1 22 86-107 90-111 (154)
53 1bdo_A Acetyl-COA carboxylase; 56.5 9 0.00031 24.7 3.0 19 89-107 62-80 (80)
54 3lnn_A Membrane fusion protein 56.4 6.2 0.00021 32.4 2.6 22 88-109 70-91 (359)
55 1f3z_A EIIA-GLC, glucose-speci 55.7 8.3 0.00029 29.5 3.1 22 86-107 95-116 (161)
56 3dva_I Dihydrolipoyllysine-res 55.6 2.4 8.3E-05 37.1 0.0 21 87-107 20-40 (428)
57 2l5t_A Lipoamide acyltransfera 54.6 11 0.00037 24.1 3.1 19 89-107 58-76 (77)
58 1z6h_A Biotin/lipoyl attachmen 53.3 9.9 0.00034 23.8 2.7 21 89-109 50-70 (72)
59 1j5k_A Heterogeneous nuclear r 51.5 50 0.0017 21.9 7.1 54 71-129 33-86 (89)
60 3n6r_A Propionyl-COA carboxyla 50.5 10 0.00036 34.8 3.4 25 84-108 621-645 (681)
61 1ax3_A Iiaglc, glucose permeas 50.2 8 0.00027 29.7 2.1 22 86-107 95-116 (162)
62 1iyu_A E2P, dihydrolipoamide a 49.8 16 0.00055 23.4 3.4 22 88-109 54-75 (79)
63 1vf7_A Multidrug resistance pr 49.1 7.9 0.00027 32.3 2.1 23 88-110 56-78 (369)
64 1zzk_A Heterogeneous nuclear r 49.0 53 0.0018 21.4 6.6 54 71-129 26-79 (82)
65 1ghj_A E2, E2, the dihydrolipo 48.3 12 0.00042 24.1 2.6 20 89-108 58-77 (79)
66 4dk0_A Putative MACA; alpha-ha 47.6 5.5 0.00019 32.7 0.9 23 88-110 45-67 (369)
67 3ne5_B Cation efflux system pr 43.3 16 0.00054 31.1 3.2 21 89-109 135-156 (413)
68 2k7v_A Dihydrolipoyllysine-res 42.0 19 0.00067 23.6 2.9 37 55-109 37-73 (85)
69 2auk_A DNA-directed RNA polyme 41.9 16 0.00054 28.5 2.7 21 87-107 166-186 (190)
70 3krm_A Insulin-like growth fac 41.9 89 0.0031 22.5 6.8 55 70-127 103-157 (163)
71 2auk_A DNA-directed RNA polyme 41.7 14 0.00049 28.7 2.5 19 88-106 63-81 (190)
72 1k8m_A E2 component of branche 41.2 22 0.00074 24.0 3.0 23 88-110 60-82 (93)
73 3crk_C Dihydrolipoyllysine-res 40.4 19 0.00065 23.8 2.6 23 88-110 61-84 (87)
74 1zko_A Glycine cleavage system 39.4 53 0.0018 24.2 5.2 40 65-108 30-70 (136)
75 3gku_A Probable RNA-binding pr 38.6 59 0.002 26.1 5.7 102 25-130 13-123 (225)
76 3hbl_A Pyruvate carboxylase; T 37.9 20 0.00069 35.1 3.3 24 86-109 1088-1111(1150)
77 1x4m_A FAR upstream element bi 37.8 90 0.0031 20.9 6.4 51 72-125 35-85 (94)
78 2xha_A NUSG, transcription ant 37.6 18 0.00062 28.6 2.5 18 88-105 22-39 (193)
79 2hh3_A KH-type splicing regula 36.7 1E+02 0.0036 21.3 7.2 50 72-126 31-80 (106)
80 3va7_A KLLA0E08119P; carboxyla 34.6 24 0.00082 34.9 3.3 23 87-109 1179-1201(1236)
81 3vot_A L-amino acid ligase, BL 34.3 74 0.0025 26.4 5.9 67 57-125 338-409 (425)
82 3u9t_A MCC alpha, methylcroton 32.6 9.4 0.00032 35.1 0.0 25 84-108 611-635 (675)
83 3bg3_A Pyruvate carboxylase, m 30.2 23 0.00078 33.1 2.2 24 85-108 659-682 (718)
84 2hh2_A KH-type splicing regula 29.5 1.4E+02 0.0047 20.5 5.8 52 71-125 26-78 (107)
85 2dne_A Dihydrolipoyllysine-res 29.0 42 0.0014 23.4 3.0 24 89-112 64-88 (108)
86 3cdx_A Succinylglutamatedesucc 28.1 40 0.0014 28.2 3.2 23 87-109 278-300 (354)
87 1zw2_B Talin, metavinculin; co 27.7 45 0.0016 18.2 2.3 19 124-142 2-20 (26)
88 1y8o_B Dihydrolipoyllysine-res 27.5 59 0.002 23.6 3.6 26 88-113 83-109 (128)
89 1ffk_F Ribosomal protein L10E; 26.3 65 0.0022 24.6 3.8 17 96-112 114-130 (157)
90 3na6_A Succinylglutamate desuc 25.6 47 0.0016 27.6 3.1 22 88-109 269-290 (331)
91 2xhc_A Transcription antitermi 25.2 37 0.0013 29.0 2.5 19 87-105 61-79 (352)
92 3ne5_B Cation efflux system pr 25.1 51 0.0017 27.9 3.3 37 55-109 205-241 (413)
93 2qf7_A Pyruvate carboxylase pr 24.4 41 0.0014 33.0 2.8 24 85-108 1105-1128(1165)
94 2qnd_A FMR1 protein; KH domain 23.6 2.1E+02 0.0071 20.6 6.1 55 71-127 86-143 (144)
95 3r8s_M 50S ribosomal protein L 23.0 77 0.0026 23.5 3.6 14 96-109 95-108 (136)
96 3fmc_A Putative succinylglutam 22.5 56 0.0019 27.6 3.1 22 87-108 301-322 (368)
97 2opv_A KHSRP protein; KH domai 21.5 1.7E+02 0.0059 18.9 6.6 51 71-124 33-83 (85)
98 3cim_A Carbon dioxide-concentr 20.7 1.8E+02 0.0063 20.1 5.0 54 66-125 12-65 (99)
99 3a7l_A H-protein, glycine clea 20.6 1.2E+02 0.004 21.9 4.1 40 67-109 24-63 (128)
100 3it5_A Protease LASA; metallop 20.5 50 0.0017 25.3 2.1 17 90-106 86-102 (182)
101 2ftc_I Mitochondrial ribosomal 20.5 81 0.0028 22.7 3.2 14 96-109 83-96 (118)
102 1hpc_A H protein of the glycin 20.1 1E+02 0.0034 22.4 3.7 41 65-108 21-61 (131)
No 1
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=100.00 E-value=1.2e-48 Score=333.82 Aligned_cols=147 Identities=34% Similarity=0.481 Sum_probs=135.4
Q ss_pred cCCCCCCccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCe
Q 031215 17 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDH 96 (164)
Q Consensus 17 ~~~~~~~~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~ 96 (164)
+.|.+....++++|+.||+||+|++||+||..+++++. +++.|++|++||+||++++.++|+.+|++++++|+++||+.
T Consensus 17 ~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~ 95 (300)
T 3l0g_A 17 QGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGDI 95 (300)
T ss_dssp -------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTCE
T ss_pred CCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCE
Confidence 56777888999999999999998349999998888888 99999999999999999999999999999999999999999
Q ss_pred eeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 97 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 97 v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
|++|++|++++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.+|||||
T Consensus 96 v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~T~~~v~~~~~~~~~i~dTRKT~PGlR~lekyAV 165 (300)
T 3l0g_A 96 TGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVDEVSGTKVKIRSTRKTTPGLRMLDKYSV 165 (300)
T ss_dssp ECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred eeCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCccChhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999994 6999999999999999999997
No 2
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=3.4e-47 Score=323.10 Aligned_cols=140 Identities=43% Similarity=0.643 Sum_probs=135.6
Q ss_pred ccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEE
Q 031215 24 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 103 (164)
Q Consensus 24 ~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~i 103 (164)
..++++|+.||+||+| +||+||+++++++..++++|++|++||+||++++.++|+.+||+++++|+++||+.|++|++|
T Consensus 12 ~~~~~~i~~~l~ED~~-~gD~Tt~~~~~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~v~~~~~dG~~v~~g~~v 90 (286)
T 1x1o_A 12 GGLEEALRAWLREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAEGARVAEGTEV 90 (286)
T ss_dssp SSHHHHHHHHHHHHHT-TCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEE
T ss_pred ccHHHHHHHHHHhcCC-CCCccchhhcCCCCeEEEEEEECCCEEEECHHHHHHHHHHcCCCEEEEEEcCCCCCccCCCEE
Confidence 4589999999999998 699999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 104 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 104 l~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
++++|++++||++||++||||||+|||||+|++||+++. +++++|||||+||+|.+|||||
T Consensus 91 ~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pglr~~~kyAv 153 (286)
T 1x1o_A 91 ARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVEALAGTKAQILDTRKTTPGLRALEKYAV 153 (286)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999994 6899999999999999999996
No 3
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=100.00 E-value=9.6e-47 Score=320.74 Aligned_cols=140 Identities=33% Similarity=0.566 Sum_probs=134.0
Q ss_pred CCccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCC
Q 031215 22 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 101 (164)
Q Consensus 22 ~~~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~ 101 (164)
+...++++|+.||+||+| +||+|+. + +++.+++++|++|++||+||++++.++|+.+|++++++|+++||+.|++|+
T Consensus 15 ~~~~~~~~i~~~L~ED~~-~gD~T~~-~-~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~ 91 (287)
T 3tqv_A 15 PNDIVTRLVRESLAEDIA-TGDITAQ-L-AEDIDTTAFCITREEMILCGQDFANEVINQLDKNIQITWLYSDAQKVPANA 91 (287)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCCGGGG-G-SCSCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTC
T ss_pred hHHHHHHHHHHHHHhhCC-CCccccc-C-CCCCeEEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEeeCCC
Confidence 446789999999999998 7999985 5 889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 102 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 102 ~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
+|++++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.+|||||
T Consensus 92 ~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~~g~~~~i~dTRKT~PglR~l~kyAV 156 (287)
T 3tqv_A 92 RIFELKGNVRSILTAERTILNFIQMLSGTATVTNKLVKLISQYKTKLLDTRKTIPGFRLAQKYAV 156 (287)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecccCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999984 7999999999999999999996
No 4
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=7.1e-46 Score=315.03 Aligned_cols=142 Identities=27% Similarity=0.423 Sum_probs=132.8
Q ss_pred CCCCCCccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCC-eeEEcHHHHHHHHhHcCCCcEEEEecCCCCe
Q 031215 18 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKED-GIIAGIALAEMIFHEVDPSLKVEWSLKDGDH 96 (164)
Q Consensus 18 ~~~~~~~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~-gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~ 96 (164)
--.|+....+++|+.||+||+| +||+||.++ ++..++++|++|++ ||+||++++.++|+.+| ++++|+++||+.
T Consensus 8 ~~~~~~~~~~~~i~~~l~ED~~-~gD~Tt~~~--~~~~~~a~~~ar~~pgv~aG~~~~~~~f~~~~--~~v~~~~~dG~~ 82 (285)
T 1o4u_A 8 HHHHHMEKILDLLMSFVKEDEG-KLDLASFPL--RNTTAGAHLLLKTENVVASGIEVSRMFLEKMG--LLSKFNVEDGEY 82 (285)
T ss_dssp -----CHHHHHHHHHHHHHHHC-SCCTTTGGG--TTCEEEEEEEECCSEEECCSHHHHHHHHHHTT--CEEEESCCTTCE
T ss_pred hhhhhhhhhHHHHHHHHHhcCC-CCCccchhc--cCCeEEEEEEEcCCCeEEEcHHHHHHHHHHcC--CEEEEEcCCCCC
Confidence 3457788899999999999998 699999877 68899999999999 99999999999999998 999999999999
Q ss_pred eeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEeecCCCCcCchhHhhhcC
Q 031215 97 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 97 v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~~~~I~~TRKT~PGlR~leKyAV 164 (164)
|++|++|++++|++++||++||++||||||+|||||+|++||+++.+++|+|||||+||+|.+|||||
T Consensus 83 v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~~~~i~~TRKt~Pglr~~~kyAv 150 (285)
T 1o4u_A 83 LEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 150 (285)
T ss_dssp EESCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSEEECCSCCCTTTHHHHHHHH
T ss_pred cCCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEeecCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999977999999999999999999996
No 5
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.9e-45 Score=314.16 Aligned_cols=139 Identities=37% Similarity=0.591 Sum_probs=128.5
Q ss_pred ccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEE
Q 031215 24 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 103 (164)
Q Consensus 24 ~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~i 103 (164)
..+++.|+.||+||+| +||+||.. ++++.+++++|++|++||+||++++.++|+.+|++++++|+++||+.|++|++|
T Consensus 27 ~~~~~~i~~~L~ED~~-~gD~Tt~~-~~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~l 104 (298)
T 3gnn_A 27 AAIARNVADALAEDVG-SGDQTGRL-VPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTV 104 (298)
T ss_dssp HHHHHHHHHHHHHHHH-HC-----C-CCCCSEEEEEEEECSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEE
T ss_pred HHHHHHHHHHHHhcCC-CCCchhhh-cCCCceEEEEEEECCCEEEEcHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEE
Confidence 3688899999999998 79999975 678899999999999999999999999999999999999999999999999999
Q ss_pred EEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 104 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 104 l~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
++++|++++||.+||++||||||+|||||+|++||+++. +++++|||||+||+|.+|||||
T Consensus 105 ~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~a~~g~~~~i~~TRKt~Pglr~l~kyAv 167 (298)
T 3gnn_A 105 CELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLRLAQKYAV 167 (298)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCEECCSCCCTTCHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCcchHHHHHhhH
Confidence 999999999999999999999999999999999999995 6999999999999999999996
No 6
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=9.6e-45 Score=312.31 Aligned_cols=139 Identities=32% Similarity=0.522 Sum_probs=133.2
Q ss_pred cHHHHHHHHHhhhCCC----CCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCC
Q 031215 25 DLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 100 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~----~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G 100 (164)
.++++|+.||+||+|. +||+||. +++++.+++++|++|++||+||++++.++|+.+|++++++|+++||+.|+||
T Consensus 45 ~~~~~i~~~L~ED~~~~~~~~gD~Tt~-~~~~~~~~~a~i~are~gVlaG~~~a~~vf~~ld~~~~v~~~~~dG~~v~~g 123 (320)
T 3paj_A 45 DITRSVIDTLKEDLGGTLDPAADITAS-LIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTPN 123 (320)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGCTTGG-GSCTTCEEEEEEEESSCEECCCHHHHHHHHHHTTSCCEEEESSCTTCEECTT
T ss_pred HHHHHHHHHHHhhCCCCCCCCCccccc-ccCCCCeEEEEEEECCCceEecHHHHHHHHHHcCCCeEEEEEeCCCCEecCC
Confidence 5788999999999971 4899998 7888999999999999999999999999999999899999999999999999
Q ss_pred CEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 101 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 101 ~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
++|++++|++++||.+||++||||||+|||||+|++||+++. +++++|||||+||+|.+|||||
T Consensus 124 ~~l~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~aa~g~~~~i~~TRKT~PglR~l~kyAV 189 (320)
T 3paj_A 124 QTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQELKGTQCRLLDTRKTIPGLRSALKYAV 189 (320)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecCCCccchHHHhhhH
Confidence 999999999999999999999999999999999999999994 7999999999999999999996
No 7
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=100.00 E-value=1e-44 Score=307.68 Aligned_cols=140 Identities=31% Similarity=0.458 Sum_probs=133.9
Q ss_pred CccHHHHHHHHHhhhCCCCC--CcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhH-c-CCCcEEEEecCCCCeee
Q 031215 23 TYDLKGVVKLALAEDAGDRG--DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE-V-DPSLKVEWSLKDGDHVH 98 (164)
Q Consensus 23 ~~~~~~~i~~~L~ED~g~~g--DlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~-l-~~~l~v~~~~~dG~~v~ 98 (164)
...++++|+.||+||+| +| |+||+++ +++.+++++|++|++||+||++++.++|+. + ||+++++|+++||+.|+
T Consensus 7 ~~~~~~~i~~~l~ED~~-~g~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~~v~~~~~dG~~v~ 84 (284)
T 1qpo_A 7 LAAARAAIARGLDEDLR-YGPDVTTLATV-PASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVP 84 (284)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCCHHHHHHS-CTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEEC
T ss_pred HHHHHHHHHHHHHHhCC-CCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHHhCCCCCEEEEEEcCCCCEec
Confidence 34678999999999998 68 9999988 889999999999999999999999999999 8 88899999999999999
Q ss_pred CCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031215 99 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 99 ~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
+|++|++++|++++||++||++||||||+|||||+|++||+++ ++++|++||||+||+|.+|||||
T Consensus 85 ~g~~v~~i~G~~~~ll~~Er~~Ln~l~~~SGIAT~t~~~v~~~~g~~~~i~~tRKt~Pglr~l~k~Av 152 (284)
T 1qpo_A 85 PGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 152 (284)
T ss_dssp TTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CCcEEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCCchHHHhhhh
Confidence 9999999999999999999999999999999999999999998 47899999999999999999996
No 8
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=100.00 E-value=9.5e-42 Score=287.13 Aligned_cols=136 Identities=29% Similarity=0.470 Sum_probs=130.2
Q ss_pred cHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEE
Q 031215 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 104 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il 104 (164)
+++++|+.||+||+| +||+||+ +++++.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.||++|+
T Consensus 2 ~~~~~i~~~l~eD~~-~gd~tt~-~~~~~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 77 (273)
T 2b7n_A 2 EIRTFLERALKEDLG-HGDLFER-VLEKDFKATAFVRAKQEGVFSGEKYALELLEMTG--IECVQTIKDKERFKPKDALM 77 (273)
T ss_dssp TTHHHHHHHHHHHHT-TCCSHHH-HCSCCCEEEEEEEESSCEECCCHHHHHHHHHHTT--CEEEEECCTTCEECTTCEEE
T ss_pred cHHHHHHHHHHhcCC-CCCceee-ccCCCCeEEEEEEEcCCEEEEcHHHHHHHHHHCC--cEEEEEcCCCCCcCCCCEEE
Confidence 368899999999998 6999998 5677899999999999999999999999999998 99999999999999999999
Q ss_pred EEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 105 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 105 ~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
+++|+++++|.+||++||||||+|||||+|++||+++. ++++++||||+||+|.+|||||
T Consensus 78 ~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~tRkt~p~~r~~~~~A~ 139 (273)
T 2b7n_A 78 EIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEALNSHKVRLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSEEECCSCCCTTCHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999995 6899999999999999999985
No 9
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=100.00 E-value=7.1e-41 Score=285.40 Aligned_cols=134 Identities=31% Similarity=0.484 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEE
Q 031215 26 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 105 (164)
Q Consensus 26 ~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~ 105 (164)
++++|+.||+||+| +||+||+ +++ +.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.||++|++
T Consensus 17 ~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~l~~ 91 (299)
T 2jbm_A 17 LAALVDSWLREDCP-GLNYAAL-VSG-AGPSQAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAE 91 (299)
T ss_dssp HHHHHHHHHHHHCS-SCCTTHH-HHC-SCEEEEEEEECSCEECCCHHHHHHHHHHTT--CEEEESSCTTCEECSSEEEEE
T ss_pred HHHHHHHHHHhhCC-CCCceee-ccC-CCeEEEEEEEcCCEEEEcHHHHHHHHHHcC--CEEEEEcCCCCCCCCCCEEEE
Confidence 78999999999998 6999998 555 889999999999999999999999999998 999999999999999999999
Q ss_pred EeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CC--CeEeecCCCCcCchhHhhhcC
Q 031215 106 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HP--ATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 106 i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~--~~I~~TRKT~PGlR~leKyAV 164 (164)
++|+++++|.+||++||||||+|||||+|++||+++ .+ +++++||||+||+|.+|||||
T Consensus 92 v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~~~tRkt~p~~r~~e~~A~ 154 (299)
T 2jbm_A 92 VRGPAHCLLLGERVALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFRLVEKYGL 154 (299)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeecCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999998 34 999999999999999999985
No 10
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=7.8e-41 Score=285.11 Aligned_cols=137 Identities=35% Similarity=0.602 Sum_probs=131.8
Q ss_pred cHHHHHHHHHhhhCCCCC------CcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHc-CCCcEEEEecCCCCee
Q 031215 25 DLKGVVKLALAEDAGDRG------DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDHV 97 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~g------DlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l-~~~l~v~~~~~dG~~v 97 (164)
+++++|+.||+||+| | |+||+++ +++..++++|++|++||+||++++.++|+.+ |++++++|+++||+.|
T Consensus 21 ~~~~~i~~~l~ED~~--g~~~~~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~v~~~~~dG~~v 97 (296)
T 1qap_A 21 DIPAAVAQALREDLG--GEVDAGNDITAQLL-PADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAI 97 (296)
T ss_dssp HHHHHHHHHHHHHTT--TSCCGGGCTGGGGS-CTTCEECCEEEESSCEECCCHHHHHHHHHHHHTTSSEEEESCCTTCEE
T ss_pred CHHHHHHHHHHHhCC--CCCCCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHhcCCCCeEEEEEcCCCCEe
Confidence 478899999999997 6 9999988 8899999999999999999999999999999 9899999999999999
Q ss_pred eCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 98 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 98 ~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
.||++|++++|+++++|.+||++||||+|+|||||+|++||+++. ++++++||||+||+|.+|||||
T Consensus 98 ~~g~~~~~v~G~~~~~l~~Er~aLn~l~~~SgIAT~t~~~v~~~~gt~v~i~~tRkt~P~~r~~e~~Av 166 (296)
T 1qap_A 98 HANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 166 (296)
T ss_dssp CTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred cCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 6899999999999999999985
No 11
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=100.00 E-value=2.7e-40 Score=281.29 Aligned_cols=135 Identities=35% Similarity=0.561 Sum_probs=129.0
Q ss_pred cHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCC----
Q 031215 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG---- 100 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G---- 100 (164)
.++++|+.||+||+| +||+||+ +++ +.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.||
T Consensus 12 ~~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 86 (294)
T 3c2e_A 12 AWRQDVTNWLSEDVP-SFDFGGY-VVG-SDLKEANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDS 86 (294)
T ss_dssp HHHHHHHHHHHHHCS-SCCHHHH-HHC-SCEEEEEEEECSSEECCCHHHHHHHHHHTT--CEEEESSCTTCEECGGGSSS
T ss_pred hHHHHHHHHHHhcCC-CCCcccc-ccC-CCeEEEEEEECCCEEEEcHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCCCC
Confidence 489999999999998 6999998 555 889999999999999999999999999998 9999999999999999
Q ss_pred --CEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CC--CeEeecCCCCcCchhHhhhcC
Q 031215 101 --LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HP--ATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 101 --~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~--~~I~~TRKT~PGlR~leKyAV 164 (164)
++|++++|+++++|.+||++||||+|+|||||+|++||+++ .+ +++++||||+||+|.+|||||
T Consensus 87 ~~~~l~~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~aa~~~~~~~~~~~tRkt~p~~r~~e~~A~ 156 (294)
T 3c2e_A 87 GKIVVAKITGPAKNILLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSM 156 (294)
T ss_dssp SCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 34 999999999999999999995
No 12
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=99.95 E-value=1e-28 Score=217.60 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhCCCCCCccccccc---CCCcEEEEEEEeeC----CeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeC
Q 031215 27 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE----DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 99 (164)
Q Consensus 27 ~~~i~~~L~ED~g~~gDlTt~~~~---~~~~~~~a~i~ake----~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~ 99 (164)
++.|+.+|.||++ .|.|++++. + +.++++++++|+ ++|+||++++.++|+.+ ++++. .++||+.|.+
T Consensus 15 ~~~I~~~L~tD~Y--~~tm~~~~~~~~~-~~~~~~~~~~R~~p~~~~v~aGl~~~~~~l~~~--~~~i~-~~~eG~~v~~ 88 (398)
T 2i1o_A 15 DEDIKKGLASDVY--FERTISAIGDKCN-DLRVAMEATVSGPLDTWINFTGLDEVLKLLEGL--DVDLY-AIPEGTILFP 88 (398)
T ss_dssp HHHHHHTCSSCTH--HHHHHHHHGGGGG-GCEEEEEEEECSCCSSCEECCCHHHHHHHHTTS--SCEEE-ECCTTCEECS
T ss_pred HHHHHHHHHhhhh--HHHHHHHHHHhCC-CCeEEEEEEECCCCCcceEEcCHHHHHHHHhhC--CeEEE-EeCCCCEECC
Confidence 5679999999995 488887765 5 788999999999 99999999999999965 48886 9999999999
Q ss_pred CC------EEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 100 GL------QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 100 G~------~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
|+ ++++++|++.+++.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++||||
T Consensus 89 g~~~g~~~~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 161 (398)
T 2i1o_A 89 RDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRSA 161 (398)
T ss_dssp BCTTSCBCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSCGGGHHHHHHHH
T ss_pred CCcccccceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999995 5789999999999999999985
No 13
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=99.95 E-value=6.5e-29 Score=218.62 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=121.8
Q ss_pred HHHHHHHHhhhCCCCCCccccccc---CCCcEEEEEEEeeC------CeeEEcHHHHHHHHhHcCCCcEEEEecCCCCee
Q 031215 27 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV 97 (164)
Q Consensus 27 ~~~i~~~L~ED~g~~gDlTt~~~~---~~~~~~~a~i~ake------~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v 97 (164)
++.|+.+|.||++ .|.|+++++ + +.++++++++|+ ++|+||++++.++|+.+ ++++. .++||+.|
T Consensus 15 ~~~I~~~L~tD~Y--~~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~--~~~i~-~~~eG~~v 88 (395)
T 2i14_A 15 EDEIKAGKTTDVY--FLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGI--PVNVY-AMPEGTIF 88 (395)
T ss_dssp HHHHHHTTTSBHH--HHHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTS--SEEEE-ECCTTCEE
T ss_pred HHHHHHHHHhhch--HHHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCC--CcEEE-EEcCCCEe
Confidence 5679999999995 488887763 5 888999999999 99999999999999954 48885 99999999
Q ss_pred eCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031215 98 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 98 ~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
.+|+++++++|++.+++.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++||||
T Consensus 89 ~~ge~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 157 (395)
T 2i14_A 89 HPYEPVLQIEGDYADFGIYETALLGMLSQASGIATAALRIKIAAKFKPVYSFGIRHMHPAIAPMIDRAA 157 (395)
T ss_dssp CTTSCSEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEECGGGGSCGGGHHHHHHHH
T ss_pred cCCCEEEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999994 5899999999999999999985
No 14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=99.79 E-value=3.8e-19 Score=160.43 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=100.3
Q ss_pred cCCCcEEEEEEEeeCC------eeEEcHHHHHHHHhHcCCC---------------------------cEEEEecCCCCe
Q 031215 50 IPLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS---------------------------LKVEWSLKDGDH 96 (164)
Q Consensus 50 ~~~~~~~~a~i~ake~------gVvaG~~~a~~i~~~l~~~---------------------------l~v~~~~~dG~~ 96 (164)
.+.+.++...+++|.. +|+||++.+.+.++.+.-. .+ .+.++||+.
T Consensus 29 g~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~yl~~~~~f~~~fl~~L~~~~f~~~-i~av~EG~~ 107 (494)
T 2f7f_A 29 GRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCT-VRSALEGDL 107 (494)
T ss_dssp TCTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTSCCCHHHHHHHHTCCCCCE-EEECCTTCE
T ss_pred CCCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCce-EEEecCCCc
Confidence 3557889999999985 8999999999999876411 23 268999999
Q ss_pred eeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCc--hhHhhhcC
Q 031215 97 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTL--RLLDKWAV 164 (164)
Q Consensus 97 v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGl--R~leKyAV 164 (164)
|.+|+++++|+|++..++.+||++||+|+|+|||||+|+++++++. ++..++||||+||. +..+|||+
T Consensus 108 v~~g~pll~v~Gp~~~~~~~Et~lLnil~~~S~IAT~a~r~v~aa~~~~v~~fgtRr~~~~~~a~~~~raa~ 179 (494)
T 2f7f_A 108 VFNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAY 179 (494)
T ss_dssp ECTTSCSEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCcHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999995 46777899999986 88899874
No 15
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=98.22 E-value=1.3e-06 Score=77.10 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred CcEEEEEEEeeCC----eeEEcHHHHHHHHhHcCC-CcEEEEe-----------------cCCCCee----eCCCEEEEE
Q 031215 53 DMEVEAHFLAKED----GIIAGIALAEMIFHEVDP-SLKVEWS-----------------LKDGDHV----HKGLQFGKV 106 (164)
Q Consensus 53 ~~~~~a~i~ake~----gVvaG~~~a~~i~~~l~~-~l~v~~~-----------------~~dG~~v----~~G~~il~i 106 (164)
+.+++.+++.|.+ +++||++++...++.+.- +-+++++ .-+|+.+ .+|+++++|
T Consensus 32 ~~~v~fe~f~R~~~~~~~~~agl~~~l~~l~~l~ft~~ei~yL~~~~~~~~~fl~yL~~frf~~~~~~~~e~~~ep~l~I 111 (407)
T 3os4_A 32 HITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTSDEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRI 111 (407)
T ss_dssp TCEEEEEEEECSSCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHTSSSCCHHHHHHHHHCCCCGGGEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceEEEEecCCCcEEEEE
Confidence 4567888888886 788999999888886520 0011111 1145544 799999999
Q ss_pred eechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCeEee--cCCCCcC
Q 031215 107 SGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATILE--TRKTAPT 155 (164)
Q Consensus 107 ~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~V~~a-----~~~~I~~--TRKT~PG 155 (164)
+|+..+....|-.+||++.++ |.|||++++++++| .+..+.+ ||..++-
T Consensus 112 ~Gp~~e~~l~Et~lL~iin~~~~~~~~~~~~~~~~~s~iatKa~r~~~aa~~~~~~~~~~~eFGtRR~~s~ 182 (407)
T 3os4_A 112 AGLWCEVIMWEVPLLAVISEIVHRRRSTQVTTDQAVQQLRTKLEQFNALSADIDITHFKLMDFGTRRRFSR 182 (407)
T ss_dssp EEEHHHHTTSHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHTTTSCCTTCCEEECCSTTCSCH
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhccccCCCeEEecccccccCH
Confidence 999999999999999999985 99999999999976 5666655 9988764
No 16
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=97.84 E-value=7.4e-06 Score=73.18 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=77.4
Q ss_pred CcEEEEEEEeeCC----eeEEcHHHHHHHHhHc-------------CC-----------C----cEEEEecCCCCeeeCC
Q 031215 53 DMEVEAHFLAKED----GIIAGIALAEMIFHEV-------------DP-----------S----LKVEWSLKDGDHVHKG 100 (164)
Q Consensus 53 ~~~~~a~i~ake~----gVvaG~~~a~~i~~~l-------------~~-----------~----l~v~~~~~dG~~v~~G 100 (164)
+.+++.+++.|.. +.+||++.+...++.+ .+ + ..-.+.+++|+.+.+|
T Consensus 36 ~~~v~fe~f~R~~p~~~~~~agL~~~l~~L~~l~ft~eei~yL~~~~~~~~~~fl~yL~~frf~~~~~~av~eg~~~~~~ 115 (446)
T 4hl7_A 36 DVSVRYELIVRSEEDASGLLDAIRQEIAHLGTLRFSDADIHYLTQHAPHLKATFLQSLRYFHFVPQEQVEMGIVKQGGKQ 115 (446)
T ss_dssp TCEEEEEEEEESCTTTHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHTTCCCCHHHHEEEEEECC----
T ss_pred CCeEEEEEEECCCCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCCHHHHHHHHhCCCCCeEEEEEeccccCcCC
Confidence 4567888888885 5678998887777742 10 0 0102457788888999
Q ss_pred CEEEEEeechhhhHHHHHHHHHHHHHH------hHHH---------HHHHHHHHHhC-----CCeEee--cCCCCc
Q 031215 101 LQFGKVSGRAHSIVIAERVVLNFMQRM------SGIA---------TLTRAMADLAH-----PATILE--TRKTAP 154 (164)
Q Consensus 101 ~~il~i~G~a~~ll~~ER~~LN~L~~~------SGIA---------T~T~~~V~~a~-----~~~I~~--TRKT~P 154 (164)
+++++|+|+..+....|-.+||++.+. |.|| |++++++.+|. +..+.+ ||..++
T Consensus 116 ep~l~VeGp~~e~~L~Et~lL~iin~~~~~~~~s~ia~~~~~~~~~tKa~rl~~aA~~~~~~~~~l~eFGtRR~~s 191 (446)
T 4hl7_A 116 QLRISIRGSWRDTILYETLVMAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKAEIERRGINNFSLTEMGTRRRFS 191 (446)
T ss_dssp EEEEEEEEEHHHHTTHHHHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSTTCSC
T ss_pred EEEEEEEEEHHHHhHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhhcccccCCCeEEecccccccC
Confidence 999999999999999999999999998 8997 89999999874 566655 999886
No 17
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=97.80 E-value=6.9e-05 Score=66.03 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=74.6
Q ss_pred CcEEEEEEEeeC--C--eeEEcHHHHHHHHhHc-----------------------------CCCcEEEEecCCCCeeeC
Q 031215 53 DMEVEAHFLAKE--D--GIIAGIALAEMIFHEV-----------------------------DPSLKVEWSLKDGDHVHK 99 (164)
Q Consensus 53 ~~~~~a~i~ake--~--gVvaG~~~a~~i~~~l-----------------------------~~~l~v~~~~~dG~~v~~ 99 (164)
+.++..+++.|. + ++++|++.+.+.++.+ ++ ..|++..+||+
T Consensus 36 ~~~~~f~~~~R~~~~~~~~~~GL~~~l~~l~~~~ft~~ei~yL~~~~~f~~~fl~~L~~~rf~~-~~v~I~a~EG~---- 110 (408)
T 1yir_A 36 NAEVEWEFRCRNQEDLRLYLPAIREQLEYLAGLAISDEQLAFLERIPFLAPDFIRFLGLFRFNP-RYVQTGIENDE---- 110 (408)
T ss_dssp TCEEEEEEEETTCCCCGGGHHHHHHHHHHHHHCCCCHHHHHHHHTSTTSCHHHHHHHHHCCCCG-GGEEEEEETTE----
T ss_pred CCEEEEEEEecCCCCcccHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhcCCCC-ceEEEEcCCCc----
Confidence 567888888887 4 7899999988887632 11 22222226665
Q ss_pred CCEEEEEeechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-----CCeEee--cCCCCcC
Q 031215 100 GLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-----PATILE--TRKTAPT 155 (164)
Q Consensus 100 G~~il~i~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~V~~a~-----~~~I~~--TRKT~PG 155 (164)
++++++|+....-..|..+||++.++ +.|||+++++++++. +..+.+ ||..++-
T Consensus 111 --~~l~i~Gp~~~~~llEt~lL~ii~~~~~~~~~~~~~~~~~~~~iatK~~rl~~aa~~~~~~~~~l~dFG~RR~~~~ 186 (408)
T 1yir_A 111 --FFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSY 186 (408)
T ss_dssp --EEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHCTTCBHHHHHHHHHHHHHHHHTTSCHHHHTTCEEEECCSTTCSCH
T ss_pred --EEEEEEecHHHHHHHHHHHHHHHHhhHhhccCCccchHHHHHHHHHHHHHHHHhhcccccCCCeEEEecCcccccH
Confidence 78999999999999999999999996 899999999887764 667765 9988763
No 18
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=97.65 E-value=0.00011 Score=66.29 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=56.7
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeechhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHHh-------------CCCeEe
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADLA-------------HPATIL 147 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~a~~l----l~~ER~~LN~L~~~SGIAT~T~~~V~~a-------------~~~~I~ 147 (164)
++|. .++||+.|.+++++++|+|+.... -..|..+|| |.|.|.|||.++++++++ .+.++.
T Consensus 114 ~~I~-A~pEGt~v~~~~Pll~Ve~~~~~f~w~~~llET~Ll~-l~~~s~vAT~A~r~~~~~~~~~~~t~~~~~~~~~~l~ 191 (484)
T 3dhf_A 114 IEIK-AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQ-SWYPITVATNSREQKKILAKYLLETSGNLDGLEYKLH 191 (484)
T ss_dssp EEEE-ECCTTCEEETTSCCEEEEESSGGGTTHHHHTHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHSSCTTGGGSEE
T ss_pred eEEE-EECCCccccCCCcEEEEEEcCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeEE
Confidence 4553 689999999999999999998844 678999999 999999999999999863 234554
Q ss_pred e--cCCCCcC
Q 031215 148 E--TRKTAPT 155 (164)
Q Consensus 148 ~--TRKT~PG 155 (164)
+ ||..++-
T Consensus 192 dFG~Rr~~~~ 201 (484)
T 3dhf_A 192 DFGYRGVSSQ 201 (484)
T ss_dssp ECCTTTSSCH
T ss_pred ecCCCcccch
Confidence 4 8877763
No 19
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=97.45 E-value=0.00016 Score=64.43 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=72.9
Q ss_pred EEEEEEEeeCC------eeEEcHHHHHHHHhH-------------------------c-------CC--CcEEEEecCC-
Q 031215 55 EVEAHFLAKED------GIIAGIALAEMIFHE-------------------------V-------DP--SLKVEWSLKD- 93 (164)
Q Consensus 55 ~~~a~i~ake~------gVvaG~~~a~~i~~~-------------------------l-------~~--~l~v~~~~~d- 93 (164)
++...++.|.+ .|++|++.+...+.. + ++ .++| +.++|
T Consensus 43 ~~~f~~~~R~p~~~~~~~v~~GL~~~l~~l~~l~ft~eei~yL~~~~~~f~~~fl~~L~~~~f~~~~~~~v~I-~a~~Eg 121 (441)
T 1vlp_A 43 TVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNYKLHPEEQISF-TSEEIE 121 (441)
T ss_dssp EEEEEEEESCTTCCBCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTCCCCHHHHEEE-EEEEET
T ss_pred EEEEEEEEeCCCccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhcCCCCHHHHHHHHhcccCcCCCceEEE-EEecCC
Confidence 46667777763 468999977765431 1 11 1244 35688
Q ss_pred CCeeeCCCEEEEEeechhhhHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCCCeEee--cCCCCc
Q 031215 94 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHPATILE--TRKTAP 154 (164)
Q Consensus 94 G~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~---~~------------SGIAT~T~~~V~~a~~~~I~~--TRKT~P 154 (164)
|+.+. |+++++|+|+....-..|..+||++. +. +.|||++++++ +.+.++.+ ||..++
T Consensus 122 Gt~v~-~ep~l~IeGp~~~~~llET~lL~ii~e~~~~~v~t~~~~~~~~~~iatka~r~~--a~~~~l~dFG~RR~~~ 196 (441)
T 1vlp_A 122 GKPTH-YKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETLF--DNGIRFSEFGTRRRRS 196 (441)
T ss_dssp TEEEE-EEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHTCCCCCCTTHHHHHHHHHHHHH--HTTCCEEECCSTTCSC
T ss_pred CceEC-CEEEEEEEEcHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhc--cCCCeEEecCCCCcCC
Confidence 99999 99999999999988899999999999 55 99999999987 45556655 998876
No 20
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=97.39 E-value=0.00066 Score=59.50 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=71.3
Q ss_pred CcEEEEEEEeeCC----e-eEEcHHHHHHHHhH------------------------------cCC-CcEEEEecCCCCe
Q 031215 53 DMEVEAHFLAKED----G-IIAGIALAEMIFHE------------------------------VDP-SLKVEWSLKDGDH 96 (164)
Q Consensus 53 ~~~~~a~i~ake~----g-VvaG~~~a~~i~~~------------------------------l~~-~l~v~~~~~dG~~ 96 (164)
+.++...++.|.+ + +++|++.+.+.++. +++ .++| +.++||
T Consensus 27 ~~~v~f~~~~R~~~~~~~~v~~gL~~~l~~l~~~~ft~~ei~yL~~~~~~f~~~fl~~L~~~r~~~~~v~I-~a~~EG-- 103 (394)
T 2im5_A 27 RAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELPYLPPIYIDFLDGFRFDPEEVTV-SIDAQG-- 103 (394)
T ss_dssp TCEEEEEEEETTCCCCCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHHCCCCGGGEEE-EECTTS--
T ss_pred CCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCHHHHHHHHhcCCCCceEEE-EEcCCC--
Confidence 6678888888884 4 78999987776542 111 1233 245666
Q ss_pred eeCCCEEEEEeechhhhHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCCCeEee--cCCCCcC
Q 031215 97 VHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHPATILE--TRKTAPT 155 (164)
Q Consensus 97 v~~G~~il~i~G~a~~ll~~ER~~LN~L~---~~------------SGIAT~T~~~V~~a~~~~I~~--TRKT~PG 155 (164)
+++++|+|+....-..|..+||++. |. +.|||+++++ ++.+.++.+ ||..++-
T Consensus 104 ----ep~l~I~Gp~~~~~l~Et~lL~ii~e~~~~~Vat~~~~~~~~~~iatka~r~--a~~~~~l~dFG~RR~~~~ 173 (394)
T 2im5_A 104 ----HLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELM--REHRATFSIFGMRRRFSL 173 (394)
T ss_dssp ----CEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--HHTTCCEEECCSTTCSCH
T ss_pred ----cEEEEEEecHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHH--hCCCCEEEEcCCcccccH
Confidence 6999999999999999999999999 55 9999999997 556666655 9988773
No 21
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=97.08 E-value=0.0022 Score=57.14 Aligned_cols=93 Identities=9% Similarity=-0.042 Sum_probs=69.4
Q ss_pred EEEEEEEeeCC-------eeEEcHHHHHHHHhHc-------------CC--------------------CcEEEEecCCC
Q 031215 55 EVEAHFLAKED-------GIIAGIALAEMIFHEV-------------DP--------------------SLKVEWSLKDG 94 (164)
Q Consensus 55 ~~~a~i~ake~-------gVvaG~~~a~~i~~~l-------------~~--------------------~l~v~~~~~dG 94 (164)
++..+++.|.. .++||++.+...++.+ .. ..++. .++
T Consensus 53 ~v~f~~~~R~~p~~~~~~~v~aGL~~~l~~l~~~~ft~eei~yL~~~~~~~~~~~f~~~fl~~L~~~~~~~~i~-a~~-- 129 (449)
T 1ybe_A 53 DATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYEL-FKR-- 129 (449)
T ss_dssp BEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTCCCCHHHHHHHHHSCSSSCSCCSCHHHHHHHHTCCCCCCEE-EEC--
T ss_pred eEEEEEEECCCCccCcchhHHHHHHHHHHHHHhCCCCHHHHHHHHhcccccCCCCCCHHHHHHHHhCCCCceEE-Eec--
Confidence 47777888762 5789999888776542 10 00121 224
Q ss_pred CeeeCCCEEEEEeechhhhHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHhCCCeEee--cC
Q 031215 95 DHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM----------------------SGIATLTRAMADLAHPATILE--TR 150 (164)
Q Consensus 95 ~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~----------------------SGIAT~T~~~V~~a~~~~I~~--TR 150 (164)
.|+++++|+|+....-..|..+||++.+. |.|||+++++ .++.+.++.+ ||
T Consensus 130 ----EGep~l~I~Gp~~~~~llET~lL~ii~~~~~t~a~~t~~~~~~s~~~~~~~~~iatka~r~-~~a~~~~l~dFG~R 204 (449)
T 1ybe_A 130 ----DGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERL-RELPGLRISDFGTR 204 (449)
T ss_dssp ----SSCEEEEECSBHHHHGGGHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH-TTCTTCCEEECCTT
T ss_pred ----CCeEEEEEEecHHHHHHHHHHHHHHHhhhhhcccccccccccchhhHHHHHHHHHHHHHHH-hccCCCeEEecCCc
Confidence 45899999999999999999999999999 9999999998 5556666655 99
Q ss_pred CCCcC
Q 031215 151 KTAPT 155 (164)
Q Consensus 151 KT~PG 155 (164)
..++-
T Consensus 205 R~~s~ 209 (449)
T 1ybe_A 205 RRHSF 209 (449)
T ss_dssp TCSCH
T ss_pred ccCcH
Confidence 88773
No 22
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=88.31 E-value=0.39 Score=32.46 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-++|++++|+.|++|+++++++..
T Consensus 21 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 45 (87)
T 3crk_C 21 TVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEEcCCCCEEcCCCEEEEEECC
Confidence 3478999999999999999999864
No 23
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=87.92 E-value=0.45 Score=30.38 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031215 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+|++++|+.|++|+++++++..
T Consensus 11 ~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEcCCcCEECCCCEEEEEECC
Confidence 46889999999999999999864
No 24
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=87.74 E-value=0.42 Score=31.44 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=20.6
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031215 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+|++++|+.|++|+++++++..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEecCCCCEEcCCCEEEEEEcc
Confidence 56789999999999999999865
No 25
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.06 E-value=0.47 Score=33.13 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.0
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-++|++++|+.|++|++|++++..
T Consensus 23 ~i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 23 NIVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp CEEEESSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEcc
Confidence 3478999999999999999999864
No 26
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.71 E-value=8.7 Score=33.80 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=45.4
Q ss_pred CcEEEEEEEeeCCeeEEcHH--HHHHHHhHcC-----------CCcEEEEecCCCCeeeCCCEEEEEeechh
Q 031215 53 DMEVEAHFLAKEDGIIAGIA--LAEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAH 111 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~--~a~~i~~~l~-----------~~l~v~~~~~dG~~v~~G~~il~i~G~a~ 111 (164)
..+ +..+.|.++|+|..++ .+-.+...+| +..-+.++++=|++|++|+++++++.+-.
T Consensus 324 ~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 324 LAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 445 8899999999998843 2333333343 46779999999999999999999999866
No 27
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=86.36 E-value=0.62 Score=29.71 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.8
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+|++++|+.|++|+++++++..
T Consensus 18 ~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 18 RVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp EECCCTTCEECTTCEEEEEEET
T ss_pred EEEcCCCCEeCCCCEEEEEecc
Confidence 5789999999999999999864
No 28
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=85.85 E-value=0.54 Score=30.83 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.6
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-.+|++++|+.|++|+++++++..
T Consensus 16 ~v~~~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 16 EVTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp EEEECCCCTTCEECBTSEEEEEESS
T ss_pred EEEEEEcCCCCEECCCCEEEEEEcC
Confidence 3457899999999999999999865
No 29
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=84.96 E-value=0.57 Score=33.39 Aligned_cols=25 Identities=24% Similarity=0.516 Sum_probs=21.3
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-++|+++.|+.|++|++|++++-.
T Consensus 23 ~v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 23 TIARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp EEEECSSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEecCCCEEEEEEcC
Confidence 3467899999999999999999864
No 30
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=84.76 E-value=0.5 Score=32.61 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-++|++++|+.|++|+++++++..
T Consensus 20 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 44 (93)
T 1k8m_A 20 TVKEWYVKEGDTVSQFDSICEVQSD 44 (93)
T ss_dssp EEEEECCCTTCEECSSSCCEEEECS
T ss_pred EEEEEEcCCcCEECCCCEEEEEEcC
Confidence 4578899999999999999999864
No 31
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=84.69 E-value=8 Score=34.05 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=46.1
Q ss_pred CcEEEEEEEeeCCeeEEcHH--HHHHHHhHcC-----------CCcEEEEecCCCCeeeCCCEEEEEeechh
Q 031215 53 DMEVEAHFLAKEDGIIAGIA--LAEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAH 111 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~--~a~~i~~~l~-----------~~l~v~~~~~dG~~v~~G~~il~i~G~a~ 111 (164)
..+.+..+.|.++|+|..++ .+-.+...+| +..-+.++++=|++|++|+++++++.+-.
T Consensus 331 ~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 331 KAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 44578899999999998844 2333333333 46779999999999999999999999866
No 32
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=84.51 E-value=0.45 Score=31.28 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.6
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
-.+|++++|+.|++|+++++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 18 VATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp ECCCSSCTTSEECSSCEEEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEcc
Confidence 356789999999999999999853
No 33
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=83.88 E-value=0.95 Score=29.25 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++++++|+.|++|++|++++..
T Consensus 21 ~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp EECCCTTCEECTTSEEEEEEET
T ss_pred EEEcCCcCEEcCCCEEEEEEcc
Confidence 5789999999999999999864
No 34
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.58 E-value=0.76 Score=31.83 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=19.3
Q ss_pred EEecCCCCeeeCCCEEEEEee
Q 031215 88 EWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G 108 (164)
+|++++|+.|++|+++++++-
T Consensus 30 ~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 30 QYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp EESSCTTEEECTTCEEEEEEE
T ss_pred EEEcCCcCEECCCCEEEEEEe
Confidence 578999999999999999984
No 35
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=83.47 E-value=0.6 Score=30.74 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.4
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
-.+|++++|+.|++|+++++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 18 IIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEeC
Confidence 467899999999999999999876
No 36
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=82.85 E-value=0.58 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.|++++|+.|++|+++++++..
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEET
T ss_pred ccccCCcCEECCCCEEEEEEec
Confidence 4689999999999999999864
No 37
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=82.21 E-value=1 Score=33.28 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.4
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-++|+++.|+.|++||+|++++..
T Consensus 43 ~V~~~~V~~Gd~V~~Gd~L~~iEa~ 67 (128)
T 1y8o_B 43 TVQRWEKKVGEKLSEGDLLAEIETD 67 (128)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEecCCCCEecCCCEEEEEEcC
Confidence 4578899999999999999999854
No 38
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=82.18 E-value=10 Score=33.45 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=46.1
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhHc-----------CCCcEEEEecCCCCeeeCCCEEEEEeechhh
Q 031215 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 112 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~l-----------~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ 112 (164)
..+.+..+.|.++|+|..++- +-.+...+ |+..-+.++++=|++|++|+++++++ +-..
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~-~~~~ 405 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH-SNRQ 405 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE-ESSS
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe-CChH
Confidence 345788999999999998653 44444444 34778999999999999999999999 5443
No 39
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=81.81 E-value=1.3 Score=29.73 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEecCCCCeeeCCCEEEEEee
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G 108 (164)
-+.|++++|+.|++|++|++++.
T Consensus 16 v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 16 LTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp EEEESSCTTEEECTTCEEEEEEC
T ss_pred EEEEECCCCCEECCCCEEEEEEe
Confidence 35789999999999999999984
No 40
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=81.75 E-value=0.49 Score=30.91 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
-.+|++++|+.|++|+++++++..
T Consensus 18 v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 18 IVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp EEECSCCTTCEECSCCCCCEEESS
T ss_pred EEEEEeCCCCEECCCCEEEEEEcc
Confidence 356889999999999999999864
No 41
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=81.16 E-value=1.2 Score=31.20 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++++++|+.|++|++|+++.-+
T Consensus 14 ~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 14 NKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EECSCTTSEECTTCEEEEEECT
T ss_pred EEECCCcCEECCCCEEEEECHH
Confidence 5689999999999999999987
No 42
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=80.86 E-value=1.2 Score=30.85 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+|++++|+.|++|++|++++-.
T Consensus 27 ~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp EECCCTTEEECSSCEEEEEESS
T ss_pred EEECCCCCEECCCCEEEEEEcc
Confidence 4789999999999999999854
No 43
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=78.59 E-value=11 Score=33.75 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=46.0
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhH---------cCCCcEEEEecCCCCeeeCCCEEEEEeechhh
Q 031215 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE---------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 112 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~---------l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ 112 (164)
..+.+..+.|.++|+|..++- +-.+... .|+..-+.++++=|++|++|++++++..+-..
T Consensus 368 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~~ 438 (474)
T 1uou_A 368 RAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGPA 438 (474)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSSS
T ss_pred CCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCChh
Confidence 345778899999999987432 2222223 34567899999999999999999999988664
No 44
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=78.30 E-value=6.6 Score=34.66 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=47.4
Q ss_pred CcEEEEEEEeeCCeeEEcHH--HHHHHHhHcC-----------CCcEEEEecCCCCeeeCCCEEEEEeechhhhH
Q 031215 53 DMEVEAHFLAKEDGIIAGIA--LAEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 114 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~--~a~~i~~~l~-----------~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll 114 (164)
..+.+..+.|.++|+|..++ .+-.+...+| +..-+.++++=|++|++|+++++++.+-...+
T Consensus 336 ~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~~ 410 (440)
T 2tpt_A 336 TAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENNW 410 (440)
T ss_dssp CCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSHHHH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCHhhH
Confidence 44578899999999998843 2333333343 46779999999999999999999999866443
No 45
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=75.85 E-value=1.6 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.5
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+|++++|+.|++|+++++++..
T Consensus 38 ~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 38 AVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp EECCCTTCCCCTTCCCEEEEC-
T ss_pred EEECCCCCEEcCCCEEEEEecc
Confidence 6789999999999999999864
No 46
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=74.20 E-value=0.35 Score=32.03 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031215 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+|++++|+.|++|+++++++..
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBCCSS
T ss_pred EEEECCCcCEECCCCEEEEEEcc
Confidence 56889999999999999998754
No 47
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=64.56 E-value=0.81 Score=30.63 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=18.9
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031215 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+|++++|+.|++|+++++++-.
T Consensus 14 ~~~~v~~Gd~V~~G~~L~~ie~~ 36 (85)
T 2k7v_A 14 TEVMVKVGDKVAAEQSLITVEGD 36 (85)
T ss_dssp CSCCCSSSCCCCCSSSCCCCSCC
T ss_pred EEEEcCCCCEEcCCCEEEEEEcc
Confidence 35788999999999999888754
No 48
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=62.05 E-value=5.5 Score=31.42 Aligned_cols=21 Identities=14% Similarity=0.163 Sum_probs=18.9
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031215 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
++.++++|+.|++||.|+++-
T Consensus 118 F~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 118 FTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EEECSCTTCEECTTCEEEEEC
T ss_pred ceEEEeCcCEEcCCCEEEEEC
Confidence 677899999999999999884
No 49
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=61.52 E-value=1.7 Score=35.08 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=0.0
Q ss_pred EEEEecCCCCeeeCCCEEEEEee
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G 108 (164)
-++|++++|+.|++||+|++++-
T Consensus 20 I~~w~vk~Gd~V~~Gd~L~~iEt 42 (229)
T 1zy8_K 20 IVKWLKKEGEAVSAGDALCEIET 42 (229)
T ss_dssp -----------------------
T ss_pred EEEEecCCCCEeCCCCEEEEEec
Confidence 46788899999999988888863
No 50
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=60.28 E-value=5.3 Score=32.52 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.0
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++++++|+.|++|++|+++.-+
T Consensus 44 ~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 44 TLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EECCCTTCEECTTCEEEEECCH
T ss_pred EEEeCCCCEECCCCEEEEEChH
Confidence 5689999999999999999876
No 51
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=59.82 E-value=3.4 Score=32.73 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEecCCCCeeeCCCEEEEEeech
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++++++|+.|++|++|+++.-+-
T Consensus 35 ~v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 35 KRNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp EECSCTTCEECTTSCSEEECCHH
T ss_pred EEEcCCCCEecCCCEEEEECcHH
Confidence 35799999999999999998763
No 52
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=58.57 E-value=7 Score=29.69 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.9
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++.+++.|+.|++|++++++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEcCCCEEEEEC
Confidence 3567899999999999999883
No 53
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=56.52 E-value=9 Score=24.73 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=16.4
Q ss_pred EecCCCCeeeCCCEEEEEe
Q 031215 89 WSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~ 107 (164)
.++++|+.|.+|+.+++++
T Consensus 62 ~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 62 ILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp ECSCTTCEECTTCEEEEEC
T ss_pred EEcCCCCEECCCCEEEEEC
Confidence 4678999999999999874
No 54
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=56.38 E-value=6.2 Score=32.35 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=20.0
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++++++|+.|++|++|+++.-+
T Consensus 70 ~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 70 SLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECCSCTTCEECTTCEEEEEECS
T ss_pred EEEcCCCCEEcCCCEEEEEChH
Confidence 4689999999999999999976
No 55
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=55.71 E-value=8.3 Score=29.54 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.9
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++.+++.|+.|++|++|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred ccEEEEeCcCEECCCCEEEEEC
Confidence 3566899999999999999883
No 56
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=55.63 E-value=2.4 Score=37.06 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=0.0
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031215 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
++|++++||.|++||+|++++
T Consensus 20 ~~w~v~~Gd~V~~gd~l~~vE 40 (428)
T 3dva_I 20 VKWFVKPGDEVNEDDVLCEVQ 40 (428)
T ss_dssp ---------------------
T ss_pred EEEEcCCCCEECCCCEEEEEE
Confidence 567777777777777777765
No 57
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=54.55 E-value=11 Score=24.15 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.9
Q ss_pred EecCCCCeeeCCCEEEEEe
Q 031215 89 WSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~ 107 (164)
.+++.|+.+.+|+++++++
T Consensus 58 ~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 58 ILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp ECCCTTCEECSCSEEEEEE
T ss_pred EEeCCcCEECCCCEEEEEE
Confidence 5788999999999999875
No 58
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=53.34 E-value=9.9 Score=23.78 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.6
Q ss_pred EecCCCCeeeCCCEEEEEeec
Q 031215 89 WSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~G~ 109 (164)
+++..|+.+.+|+.++++..+
T Consensus 50 ~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 50 VKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp ESSCTTCEECTTCEEEEEGGG
T ss_pred EecCCCCEECCCCEEEEEeCC
Confidence 368899999999999998643
No 59
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=51.53 E-value=50 Score=21.93 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=39.5
Q ss_pred HHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhH
Q 031215 71 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 129 (164)
Q Consensus 71 ~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SG 129 (164)
=....++-+..+ +++++.-. .-...+.+++|.|+..++..|.+.+++++...||
T Consensus 33 G~~Ik~I~~~tg--a~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 33 GQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp GHHHHHHHHHTC--CEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhHHHHHHHhC--CeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 467777777776 66655321 1123468999999999999999999999988776
No 60
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=50.54 E-value=10 Score=34.77 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEee
Q 031215 84 SLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+.-++|++++|+.|++||+|++++-
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEC
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 3446899999999999999999874
No 61
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=50.24 E-value=8 Score=29.66 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++.+++.|+.|++|++|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEEC
T ss_pred ccEEEEeCCCEEcCCCEEEEEC
Confidence 3566899999999999999884
No 62
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=49.82 E-value=16 Score=23.45 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.7
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+.++..|+.+.+|++|+++...
T Consensus 54 ~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 54 SVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EESCCTTCEEETTSEEEEEECC
T ss_pred EEEeCCCCEECCCCEEEEEecC
Confidence 3578899999999999998754
No 63
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=49.07 E-value=7.9 Score=32.26 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEecCCCCeeeCCCEEEEEeech
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++++++|+.|++|++|+++.-+.
T Consensus 56 ~v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 56 KRLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp ECCSCSSEEECTTSEEEEECCHH
T ss_pred EEEcCCCCEEcCCCEEEEECcHH
Confidence 35789999999999999998653
No 64
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=49.02 E-value=53 Score=21.42 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhH
Q 031215 71 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 129 (164)
Q Consensus 71 ~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SG 129 (164)
=..+.++-+..+ +++++.-. .-...+.++++.|+..++..|-..+.+++...+|
T Consensus 26 G~~Ik~I~~~tg--a~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 26 GQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp GHHHHHHHHHHC--CEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHC--CEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 467788888777 66654321 1122467899999999999999999999988765
No 65
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=48.31 E-value=12 Score=24.06 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.8
Q ss_pred EecCCCCeeeCCCEEEEEee
Q 031215 89 WSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~G 108 (164)
+++++|+.+.+|++|+++..
T Consensus 58 ~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 58 IVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp ESSCTTCEECTTCEEEEECC
T ss_pred EEcCCcCEECCCCEEEEEec
Confidence 57889999999999999864
No 66
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.60 E-value=5.5 Score=32.72 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEecCCCCeeeCCCEEEEEeech
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++++++|+.|++|++|+++.-+.
T Consensus 45 ~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 45 KLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp EECCCTTSCCCSSCCCEECCCHH
T ss_pred EEEECCCCEECCCCEEEEEcCHH
Confidence 56899999999999999998764
No 67
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=43.33 E-value=16 Score=31.09 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.5
Q ss_pred Eec-CCCCeeeCCCEEEEEeec
Q 031215 89 WSL-KDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 89 ~~~-~dG~~v~~G~~il~i~G~ 109 (164)
+++ ++|+.|++|++|+++.-+
T Consensus 135 v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 135 VYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECSCCTTCEECTTCEEEEEECC
T ss_pred EEeCCCCCEEcCCCEEEEEcCH
Confidence 466 899999999999999954
No 68
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=42.04 E-value=19 Score=23.55 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=27.8
Q ss_pred EEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031215 55 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 55 ~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+....+.|..+|++. ++++..|+.+.+|++|+++...
T Consensus 37 k~~~~i~Ap~~G~V~------------------~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 37 KASMEVPAPFAGVVK------------------ELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CSEEEEECSSCBCCC------------------EECSCTTCCBCTTSEEEEEECC
T ss_pred ccEEEEECCCCEEEE------------------EEEeCCCCEECCCCEEEEEEcC
Confidence 456677777776532 2477899999999999999754
No 69
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=41.90 E-value=16 Score=28.46 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.0
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031215 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
..+.+.||+.|++|++|+++-
T Consensus 166 a~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 166 AIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp CEESSCTTCEECTTCEEEEEE
T ss_pred CEEEEcCCCEEcCCCEEEEcc
Confidence 345799999999999999874
No 70
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=41.86 E-value=89 Score=22.51 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=40.8
Q ss_pred cHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHH
Q 031215 70 GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 127 (164)
Q Consensus 70 G~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~ 127 (164)
|-..+.++-+..+ +.+.+ -+||..-...+..+++.|+..++..|.+.++.+++.+
T Consensus 103 gG~~I~~i~~~tg--a~I~i-~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 103 GGKTVNELQNLTA--AEVVV-PRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp GGHHHHHHHHHHC--CEEEC-CTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhC--CeEEE-CCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 3567777877777 67754 3455443444569999999999999999999988754
No 71
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=41.72 E-value=14 Score=28.67 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.9
Q ss_pred EEecCCCCeeeCCCEEEEE
Q 031215 88 EWSLKDGDHVHKGLQFGKV 106 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i 106 (164)
.++++||+.|++|++|++.
T Consensus 63 ~L~V~dG~~V~~G~~laew 81 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW 81 (190)
T ss_dssp EESSCTTCEECTTCEEEEC
T ss_pred EEEecCCCEEcCCCEEEEE
Confidence 4589999999999999984
No 72
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=41.21 E-value=22 Score=24.05 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=19.4
Q ss_pred EEecCCCCeeeCCCEEEEEeech
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++++++|+.+.+|++|++++...
T Consensus 60 ~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 60 KLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EECCCSSCEECTTSEEEEEECSC
T ss_pred EEEcCCCCEeCCCCEEEEEecCC
Confidence 36789999999999999997543
No 73
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=40.35 E-value=19 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.1
Q ss_pred EEecCCCC-eeeCCCEEEEEeech
Q 031215 88 EWSLKDGD-HVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~-~v~~G~~il~i~G~a 110 (164)
++++++|+ .+.+|++|+++.-..
T Consensus 61 ~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 61 KILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EESSCTTCCCEETTCEEEEEESSS
T ss_pred EEEECCCCeEECCCCEEEEEEccc
Confidence 36789999 899999999997543
No 74
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=39.39 E-value=53 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=26.6
Q ss_pred CeeEEc-HHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEee
Q 031215 65 DGIIAG-IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 65 ~gVvaG-~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+-+.-| .+++...+ |.-..++ ..+.|+.|++|++++.++.
T Consensus 30 ~~~~vGit~~a~~~l---G~i~~V~-lp~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 30 KVATVGITNHAQEQL---GDVVYVD-LPEVGREVKKGEVVASIES 70 (136)
T ss_dssp TEEEEEECHHHHHHH---CSEEEEE-CCCTTCEECTTCEEEEEEE
T ss_pred CEEEEeeEhhhcccC---CCcEEEE-ecCCCCEEeCCCEEEEEEE
Confidence 446677 45555444 4212333 2599999999999999985
No 75
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=38.55 E-value=59 Score=26.07 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhhhCCCCCCcccccc--------cCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCe
Q 031215 25 DLKGVVKLALAEDAGDRGDVTCMAT--------IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDH 96 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~gDlTt~~~--------~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~ 96 (164)
.+++-|+.++.|=--+..|+..+.+ +.+.+.+...+..+++-.=...+++..+|..+|.+..++..+.++
T Consensus 13 TveeAi~~Al~~L~v~~d~l~~eVleeg~kGffGiG~k~a~V~v~~~~~~~~~a~~~L~~ll~~m~~~~~i~~~~~~~-- 90 (225)
T 3gku_A 13 TVEEAVTKALIELQTTSDKLTYEIVEKGSAGFLGIGSKPAIIRAKRKETLQDKAIEFLEQVFDAMNMAVDISVEYNET-- 90 (225)
T ss_dssp SHHHHHHHHHHHHTCCGGGEEEEEEECCBCCC--CCCBCEEEEEEECCCHHHHHHHHHHHHHHHTTCCCEEEEEEETT--
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEEEecCCCccccccCceEEEEEEeccchHHHHHHHHHHHHHHcCCCeEEEEEEecC--
Confidence 4677777777652111234443322 223455666666665533345678889999998666666533321
Q ss_pred eeCCCEEEEEeechhhhHHHHH-HHHHHHHHHhHH
Q 031215 97 VHKGLQFGKVSGRAHSIVIAER-VVLNFMQRMSGI 130 (164)
Q Consensus 97 v~~G~~il~i~G~a~~ll~~ER-~~LN~L~~~SGI 130 (164)
.+.+.+.+.|+-..+|.+-+ -.|+-||++...
T Consensus 91 --~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 91 --EKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp --TTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 13578889998777776655 467888877543
No 76
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=37.90 E-value=20 Score=35.09 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.3
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031215 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
-++|++++|+.|++||+|+.++..
T Consensus 1088 v~~~~v~~Gd~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A 1088 VTEVKVSVGETVKANQPLLITEAM 1111 (1150)
T ss_dssp EEEECCCTTCEECTTCEEEEEESS
T ss_pred EEEEEeCCCCEECCCCEEEEEEec
Confidence 368999999999999999999843
No 77
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=37.76 E-value=90 Score=20.88 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=36.6
Q ss_pred HHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHH
Q 031215 72 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 125 (164)
Q Consensus 72 ~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~ 125 (164)
..+.++-+..+ +++++ -++|......+.+++|.|+..++..|-..+..++.
T Consensus 35 ~~Ik~I~~~tg--a~I~I-~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 35 ETIKQLQERAG--VKMVM-IQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR 85 (94)
T ss_dssp SHHHHHHHHHT--SEEEE-CCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC--CeEEe-cCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHh
Confidence 45666666676 66654 34554434467899999999999999888888763
No 78
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=37.59 E-value=18 Score=28.61 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.3
Q ss_pred EEecCCCCeeeCCCEEEE
Q 031215 88 EWSLKDGDHVHKGLQFGK 105 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~ 105 (164)
.++++||+.|++|++|++
T Consensus 22 ~L~V~dG~~VkkG~~lae 39 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAE 39 (193)
T ss_dssp EESCCTTCEECTTCEEEE
T ss_pred EEEECCCCEEcCCCEEEE
Confidence 358999999999999998
No 79
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=36.72 E-value=1e+02 Score=21.32 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=37.3
Q ss_pred HHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHH
Q 031215 72 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 126 (164)
Q Consensus 72 ~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~ 126 (164)
..+.++-+..+ +++++.-.++ ...+.+++|.|+.+++..|.+.+.+++..
T Consensus 31 ~~Ik~I~~~TG--akI~I~~~~~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 31 EMIKKIQNDAG--VRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp HHHHHHHHHHT--CEEEECSSCS---SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cEEEEecCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 66777777776 6776543332 23467999999999999999999888764
No 80
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=34.63 E-value=24 Score=34.94 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=20.4
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031215 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++|+++.||.|++||+|+.++-.
T Consensus 1179 ~~~~v~~Gd~V~~g~~l~~iEam 1201 (1236)
T 3va7_A 1179 WKPVAAVGDHVEAGDGVIIIEAM 1201 (1236)
T ss_dssp EEESSCTTCEECSSCEEEEEEET
T ss_pred EEEEcCCCCEECCCCEEEEEEec
Confidence 46899999999999999999853
No 81
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=34.34 E-value=74 Score=26.40 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=37.5
Q ss_pred EEEEEeeCCeeEEcHHHHHHHHhHcCCCc-EEEEecCCCCeeeC----CCEEEEEeechhhhHHHHHHHHHHHH
Q 031215 57 EAHFLAKEDGIIAGIALAEMIFHEVDPSL-KVEWSLKDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQ 125 (164)
Q Consensus 57 ~a~i~ake~gVvaG~~~a~~i~~~l~~~l-~v~~~~~dG~~v~~----G~~il~i~G~a~~ll~~ER~~LN~L~ 125 (164)
...+.+..+|++..++-..++.. .|++ .+.++.+.|+.+.+ ++.+..+.....+.-.+++.+..+++
T Consensus 338 ~~~~~~~~~G~~~~i~g~~~~~~--~p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~ 409 (425)
T 3vot_A 338 NYIIPVQGSGTFEKIDGLEEVKQ--RQEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDD 409 (425)
T ss_dssp EEECCCCSCEEEEEEETHHHHHT--CTTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCeEEEecCCHHHHhc--CCCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence 33345667888765544444443 2344 67888999999875 34444333333344455555544443
No 82
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=32.55 E-value=9.4 Score=35.07 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEee
Q 031215 84 SLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+.-++|++++|+.|++||+|++++-
T Consensus 611 G~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 611 GSIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp -------------------------
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 3457899999999999999999884
No 83
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=30.23 E-value=23 Score=33.12 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.3
Q ss_pred cEEEEecCCCCeeeCCCEEEEEee
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
.-++|.+++|+.|++||++++++.
T Consensus 659 ~V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 659 KVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp EEEEECSCTTCCBCTTCCCEEEES
T ss_pred EEEEEEeCCCCeeCCCCEEEEEec
Confidence 346899999999999999999984
No 84
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=29.48 E-value=1.4e+02 Score=20.51 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=35.4
Q ss_pred HHHHHHHHhHcCCCcEEEEecCCCCe-eeCCCEEEEEeechhhhHHHHHHHHHHHH
Q 031215 71 IALAEMIFHEVDPSLKVEWSLKDGDH-VHKGLQFGKVSGRAHSIVIAERVVLNFMQ 125 (164)
Q Consensus 71 ~~~a~~i~~~l~~~l~v~~~~~dG~~-v~~G~~il~i~G~a~~ll~~ER~~LN~L~ 125 (164)
=..+.++-+..+ +++++.- +.+. -...+.+++|.|+..++..|...+.+++.
T Consensus 26 G~~Ik~I~~~TG--a~I~I~~-~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 26 GENVKAINQQTG--AFVEISR-QLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp TCHHHHHHHHSS--SEEEECC-CCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHhC--CEEEEcC-ccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHh
Confidence 356777777776 6666532 2111 12356899999999999998888877653
No 85
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=29.02 E-value=42 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.2
Q ss_pred EecCCCC-eeeCCCEEEEEeechhh
Q 031215 89 WSLKDGD-HVHKGLQFGKVSGRAHS 112 (164)
Q Consensus 89 ~~~~dG~-~v~~G~~il~i~G~a~~ 112 (164)
++++.|+ .|..|++|+++.-....
T Consensus 64 i~v~~G~~~V~~G~~l~~i~~~~~~ 88 (108)
T 2dne_A 64 ILVAEGTRDVPIGAIICITVGKPED 88 (108)
T ss_dssp CSSCTTCCSEETTCEEEEEESCHHH
T ss_pred EEeCCCCeeecCCCEEEEEecCccc
Confidence 5788998 89999999999876544
No 86
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=28.11 E-value=40 Score=28.15 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=19.5
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031215 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++..++.|+.|++||+|+++.-+
T Consensus 278 ~~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 278 FEPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp EEESCCTTCEECTTSEEEEEECT
T ss_pred EEEeCCCCCEeCCCCEEEEEECC
Confidence 55678899999999999999843
No 87
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus}
Probab=27.69 E-value=45 Score=18.18 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHhC
Q 031215 124 MQRMSGIATLTRAMADLAH 142 (164)
Q Consensus 124 L~~~SGIAT~T~~~V~~a~ 142 (164)
|.-+++|++.+.-+|+++.
T Consensus 2 L~aak~i~~a~~~Lvk~A~ 20 (26)
T 1zw2_B 2 LEAAKSIAAATSALVKAAS 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 6778999999999999874
No 88
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=27.48 E-value=59 Score=23.60 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=21.3
Q ss_pred EEecCCCC-eeeCCCEEEEEeechhhh
Q 031215 88 EWSLKDGD-HVHKGLQFGKVSGRAHSI 113 (164)
Q Consensus 88 ~~~~~dG~-~v~~G~~il~i~G~a~~l 113 (164)
++++++|+ .|..|++|+++.-....+
T Consensus 83 ~i~v~~Gd~~V~~G~~L~~i~~~~~~~ 109 (128)
T 1y8o_B 83 KILVPEGTRDVPLGTPLCIIVEKEADI 109 (128)
T ss_dssp EESSCTTCCSEETTCEEEEEESSGGGG
T ss_pred EEEeCCCCeeecCCCEEEEEecCccch
Confidence 46789998 899999999998765443
No 89
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=26.29 E-value=65 Score=24.61 Aligned_cols=17 Identities=6% Similarity=-0.265 Sum_probs=15.2
Q ss_pred eeeCCCEEEEEeechhh
Q 031215 96 HVHKGLQFGKVSGRAHS 112 (164)
Q Consensus 96 ~v~~G~~il~i~G~a~~ 112 (164)
.|++|++|+++.|..++
T Consensus 114 rVk~G~ilfei~gv~~~ 130 (157)
T 1ffk_F 114 RSHGANHDFIAWVNPDP 130 (157)
T ss_pred EEcCCCEEEEEeccCHH
Confidence 48999999999998777
No 90
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=25.60 E-value=47 Score=27.56 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.4
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031215 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
...++-|+.|++||+|++|.-+
T Consensus 269 ~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 269 EIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp EESSCTTCEECTTCEEEEEECS
T ss_pred EEcCCCCCEEcCCCEEEEEEcC
Confidence 3457899999999999999854
No 91
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=25.22 E-value=37 Score=28.96 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=16.7
Q ss_pred EEEecCCCCeeeCCCEEEE
Q 031215 87 VEWSLKDGDHVHKGLQFGK 105 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~ 105 (164)
..++++||+.|++|++|++
T Consensus 61 a~l~v~~g~~V~~g~~la~ 79 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAE 79 (352)
T ss_dssp CEESCCTTCEECTTCEEEE
T ss_pred CEEEecCCCEEcCCCEEEE
Confidence 3458999999999999988
No 92
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=25.07 E-value=51 Score=27.89 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=29.8
Q ss_pred EEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031215 55 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 55 ~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.....|.|+.+|+|. +..+..|+.|.+|++|+++...
T Consensus 205 ~~~~~I~AP~~G~V~------------------~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 205 QTRFTLKAPIDGVIT------------------AFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp CCEEEEECSSSEEEE------------------ECCCCTTCEECTTSCSEEEEEE
T ss_pred cccEEEEcCCCeEEE------------------EEEcCCCCEECCCCcEEEEeCC
Confidence 345689999999987 2457899999999999998743
No 93
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=24.38 E-value=41 Score=33.00 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=18.1
Q ss_pred cEEEEecCCCCeeeCCCEEEEEee
Q 031215 85 LKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
.-++|.++.|+.|++||+|+.++.
T Consensus 1105 ~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1105 VISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp EEEEECCSSCCCC---CEEEEEEC
T ss_pred EEEEEEcCCcCEeCCCCEEEEEEc
Confidence 346899999999999999999983
No 94
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=23.60 E-value=2.1e+02 Score=20.60 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=35.3
Q ss_pred HHHHHHHHhHcCCCc-EEEEecCCCC--eeeCCCEEEEEeechhhhHHHHHHHHHHHHHH
Q 031215 71 IALAEMIFHEVDPSL-KVEWSLKDGD--HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 127 (164)
Q Consensus 71 ~~~a~~i~~~l~~~l-~v~~~~~dG~--~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~ 127 (164)
-..+..+-+..| + ++.+.-.+.. ....+.+-+++.|+..++-.|...+...|+++
T Consensus 86 G~nIr~i~~~tG--~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 86 GKLIQEIVDKSG--VVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp GHHHHHHHHHHT--CSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHC--CEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 355666666666 3 4443322211 11123356899999999999999999988875
No 95
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=22.96 E-value=77 Score=23.47 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=12.6
Q ss_pred eeeCCCEEEEEeec
Q 031215 96 HVHKGLQFGKVSGR 109 (164)
Q Consensus 96 ~v~~G~~il~i~G~ 109 (164)
.|++|++|+++.|.
T Consensus 95 ~Vk~G~ilfEi~g~ 108 (136)
T 3r8s_M 95 LIQPGKVLYEMDGV 108 (136)
T ss_dssp EECTTCEEEEEESS
T ss_pred EECCCCEEEEEeCC
Confidence 47899999999995
No 96
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=22.54 E-value=56 Score=27.62 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=19.0
Q ss_pred EEEecCCCCeeeCCCEEEEEee
Q 031215 87 VEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G 108 (164)
++..++-|+.|++||+|.+|.-
T Consensus 301 ~~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 301 VEYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEECSCTTCCBCTTCEEEEEEC
T ss_pred EEEeCCCCCEeCCCCEEEEEEc
Confidence 4456889999999999999986
No 97
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=21.53 E-value=1.7e+02 Score=18.91 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHH
Q 031215 71 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 124 (164)
Q Consensus 71 ~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L 124 (164)
-.....+-+..+ +++++ -++|..-...+..+.|.|+..++..|-..+..++
T Consensus 33 G~~Ik~I~~~tg--a~I~i-~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 33 GETIKQLQERAG--VKMIL-IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp THHHHHHHHHHT--CEEEE-CSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC--CEEEE-cCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 466777777777 66654 3466543456788999999999999988887765
No 98
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=20.73 E-value=1.8e+02 Score=20.13 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=40.6
Q ss_pred eeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHH
Q 031215 66 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 125 (164)
Q Consensus 66 gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~ 125 (164)
++.+++.-+...++..+ +++..+-. ..+|...+.++|+..++-.+=+...+..+
T Consensus 12 g~~~~I~AAD~a~KAA~--V~lv~~~~----~~~G~~~vii~GdVsaV~~Av~ag~~~~~ 65 (99)
T 3cim_A 12 GFPAVVEAADSMVKAAR--VTLVGYEK----IGSGRVTVIVRGDVSEVQASVSAGIEAAN 65 (99)
T ss_dssp SHHHHHHHHHHHHHHSS--EEEEEEEE----EETTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCC--cEEEEEEe----cCCcEEEEEEEEcHHHHHHHHHHHHHHHh
Confidence 67788999999999876 66654332 67889999999999988777665555443
No 99
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=20.59 E-value=1.2e+02 Score=21.94 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=25.8
Q ss_pred eEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031215 67 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 67 VvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+.-|+.... ...+|.-..++ ..+.|+.|++|+.++.++..
T Consensus 24 ~~vGitd~a--~~~lG~i~~v~-lp~vG~~V~~g~~l~~vEs~ 63 (128)
T 3a7l_A 24 YTVGITEHA--QELLGDMVFVD-LPEVGATVSAGDDCAVAESV 63 (128)
T ss_dssp EEEEECHHH--HHHHCSEEEEE-CCCTTCEECTTCEEEEEEES
T ss_pred EEEEEehHH--hccCCceEEEE-ecCCCCEEeCCCEEEEEEec
Confidence 556763322 34555312332 35899999999999999854
No 100
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=20.54 E-value=50 Score=25.32 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.6
Q ss_pred ecCCCCeeeCCCEEEEE
Q 031215 90 SLKDGDHVHKGLQFGKV 106 (164)
Q Consensus 90 ~~~dG~~v~~G~~il~i 106 (164)
.++.|+.|++|++|..+
T Consensus 86 ~V~~G~~V~~Gq~IG~v 102 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVY 102 (182)
T ss_dssp CCCTTCEECTTCEEEEE
T ss_pred ccCCCCEEcCCCEEEee
Confidence 48899999999999987
No 101
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=20.52 E-value=81 Score=22.70 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=12.6
Q ss_pred eeeCCCEEEEEeec
Q 031215 96 HVHKGLQFGKVSGR 109 (164)
Q Consensus 96 ~v~~G~~il~i~G~ 109 (164)
.|++|++|+++.|+
T Consensus 83 ~Vk~G~ilfEi~g~ 96 (118)
T 2ftc_I 83 PVKAGRLVVEMGGR 96 (118)
T ss_pred EECCCCEEEEEecc
Confidence 58999999999994
No 102
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=20.14 E-value=1e+02 Score=22.44 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=26.5
Q ss_pred CeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEee
Q 031215 65 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 65 ~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+.+.-|+.... ...+|. +..--..+.|+.|++|++++.++.
T Consensus 21 ~~~~vGitd~a--~~~lG~-i~~v~lp~~G~~V~~g~~l~~vEs 61 (131)
T 1hpc_A 21 SVATIGITDHA--QDHLGE-VVFVELPEPGVSVTKGKGFGAVES 61 (131)
T ss_dssp TEEEEEECHHH--HHHHCS-EEEEECCCTTCEECBTSEEEEEEE
T ss_pred CEEEEEEehhh--cccCCC-ceEEEecCCCCEEeCCCEEEEEEe
Confidence 44556764332 345553 322223589999999999999985
Done!